Query 028358
Match_columns 210
No_of_seqs 116 out of 177
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 16:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028358.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028358hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c6aa1 g.41.11.1 (A:290-335) 8.1 81 0.0059 19.6 1.6 21 28-48 2-22 (46)
2 d1c6sa_ a.3.1.1 (A:) Cytochrom 7.4 24 0.0017 22.3 -1.4 11 33-43 64-74 (87)
3 d1k28a1 b.40.8.1 (A:6-129) Tai 6.9 95 0.007 22.2 1.8 27 14-43 25-52 (124)
4 d1eika_ d.78.1.1 (A:) RNA poly 6.9 63 0.0046 21.4 0.7 12 158-169 8-19 (77)
5 d1dzfa2 d.78.1.1 (A:144-215) E 6.5 67 0.0049 21.0 0.7 11 159-169 5-15 (72)
6 d1t94a2 e.8.1.7 (A:75-407) DNA 5.0 96 0.007 25.1 0.8 13 196-208 221-233 (333)
7 d1cc5a_ a.3.1.1 (A:) Cytochrom 4.8 43 0.0031 21.0 -1.2 12 32-43 66-77 (83)
8 d1ctja_ a.3.1.1 (A:) Cytochrom 4.4 42 0.0031 21.0 -1.5 11 33-43 67-77 (89)
9 d1im4a_ e.8.1.7 (A:) DinB homo 4.2 1.2E+02 0.0088 22.6 0.8 13 196-208 131-143 (209)
10 d1jiha2 e.8.1.7 (A:1-389) DNA 4.1 1.2E+02 0.0086 25.2 0.8 13 196-208 246-258 (389)
No 1
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.13 E-value=81 Score=19.60 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=17.4
Q ss_pred CCCCCCCCccccccccCCCCC
Q 028358 28 NGGVSELGEEDVWSTVDDVED 48 (210)
Q Consensus 28 ~~~~~El~EEDVW~v~~~~~~ 48 (210)
.+.+.|+.++|.|.-....+-
T Consensus 2 ~d~D~Eit~~D~WkC~~C~~~ 22 (46)
T d2c6aa1 2 FEEDPEISLADYWKCTSCNEM 22 (46)
T ss_dssp CCCCSSSCGGGCEECTTTCCE
T ss_pred CCcccccchhhhccCcccccc
Confidence 467789999999999887654
No 2
>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]}
Probab=7.37 E-value=24 Score=22.28 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=9.2
Q ss_pred CCCcccccccc
Q 028358 33 ELGEEDVWSTV 43 (210)
Q Consensus 33 El~EEDVW~v~ 43 (210)
.|.+||||.++
T Consensus 64 ~Ls~~ei~~v~ 74 (87)
T d1c6sa_ 64 RLTDEQIQDVA 74 (87)
T ss_dssp TSCSHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 48999999886
No 3
>d1k28a1 b.40.8.1 (A:6-129) Tail-associated lysozyme gp5, N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Probab=6.91 E-value=95 Score=22.20 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=18.2
Q ss_pred cccccccCCCCCCCCCCCCCCCcccc-cccc
Q 028358 14 RYLGSYSYSNGQGTNGGVSELGEEDV-WSTV 43 (210)
Q Consensus 14 r~LG~~~~~~~~~~~~~~~El~EEDV-W~v~ 43 (210)
|.+|.|...-. ..+..+|..||+ |..+
T Consensus 25 RI~G~H~~~~~---~~~~~~lp~~dLPWA~v 52 (124)
T d1k28a1 25 RVVGLHPPQRA---QGDVMGIPTEKLPWMSV 52 (124)
T ss_dssp EEBTTBCSCCS---CCSSBCCCGGGSCEEEE
T ss_pred EEeeecCCCcc---ccccccCCcccCcceeE
Confidence 67887643321 345668889999 9975
No 4
>d1eika_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=6.89 E-value=63 Score=21.38 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=9.5
Q ss_pred cCCCCCeeehhh
Q 028358 158 MEMIPPHEYLAR 169 (210)
Q Consensus 158 ~~~vPPHe~vaR 169 (210)
-.+||+|++|..
T Consensus 8 H~lVPkH~il~~ 19 (77)
T d1eika_ 8 HQLVPEHVILNE 19 (77)
T ss_dssp SSSCCEEEEECH
T ss_pred cccCCCeEEcCH
Confidence 368999999954
No 5
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.51 E-value=67 Score=20.97 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=9.1
Q ss_pred CCCCCeeehhh
Q 028358 159 EMIPPHEYLAR 169 (210)
Q Consensus 159 ~~vPPHe~vaR 169 (210)
.+||+|++|-.
T Consensus 5 ~lVPkH~~l~~ 15 (72)
T d1dzfa2 5 ELVPKHIRLSS 15 (72)
T ss_dssp TTSCEEEECCH
T ss_pred ccCCCeEEcCH
Confidence 68999999944
No 6
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.97 E-value=96 Score=25.05 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=11.9
Q ss_pred hhhhhhhhhcccc
Q 028358 196 RRVRDAVWSQTGF 208 (210)
Q Consensus 196 ~rVRNAVlr~TGF 208 (210)
.++|++|+.+|||
T Consensus 221 ~~IR~~I~~etG~ 233 (333)
T d1t94a2 221 KEIRFRIEQKTTL 233 (333)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCC
Confidence 5799999999997
No 7
>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}
Probab=4.80 E-value=43 Score=21.04 Aligned_cols=12 Identities=0% Similarity=0.388 Sum_probs=10.1
Q ss_pred CCCCcccccccc
Q 028358 32 SELGEEDVWSTV 43 (210)
Q Consensus 32 ~El~EEDVW~v~ 43 (210)
..|.+||||.|+
T Consensus 66 ~~Lsd~ei~~vv 77 (83)
T d1cc5a_ 66 ADCSDDELKAAI 77 (83)
T ss_dssp SSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 369999999986
No 8
>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]}
Probab=4.44 E-value=42 Score=21.05 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=9.6
Q ss_pred CCCcccccccc
Q 028358 33 ELGEEDVWSTV 43 (210)
Q Consensus 33 El~EEDVW~v~ 43 (210)
-|.+||||.|+
T Consensus 67 ~Lsd~ei~~v~ 77 (89)
T d1ctja_ 67 RLDEDEIAGVA 77 (89)
T ss_dssp TBCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 48999999986
No 9
>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=4.16 E-value=1.2e+02 Score=22.56 Aligned_cols=13 Identities=8% Similarity=0.463 Sum_probs=11.5
Q ss_pred hhhhhhhhhcccc
Q 028358 196 RRVRDAVWSQTGF 208 (210)
Q Consensus 196 ~rVRNAVlr~TGF 208 (210)
+++|+.|+++||+
T Consensus 131 ~~ir~~I~~~~gl 143 (209)
T d1im4a_ 131 RKIKQEILEKEKI 143 (209)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCC
Confidence 4699999999997
No 10
>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.10 E-value=1.2e+02 Score=25.21 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=12.2
Q ss_pred hhhhhhhhhcccc
Q 028358 196 RRVRDAVWSQTGF 208 (210)
Q Consensus 196 ~rVRNAVlr~TGF 208 (210)
.++|+.|+++|||
T Consensus 246 ~~IR~~I~~etGl 258 (389)
T d1jiha2 246 KGIRDSIKDILGY 258 (389)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCC
Confidence 6899999999998
Done!