BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028360
         (210 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SZ63|NUD14_ARATH Nudix hydrolase 14, chloroplastic OS=Arabidopsis thaliana GN=NUDT14
           PE=1 SV=2
          Length = 309

 Score =  261 bits (666), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 139/198 (70%), Positives = 162/198 (81%), Gaps = 8/198 (4%)

Query: 5   FYTLPKRLTVSPS---PPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVH 61
           F  LP RL   PS   P  LH ++  ++  L C KM + SS   LT SIT+PSQ ++PV 
Sbjct: 4   FTLLPSRLLAFPSRALPRRLHHHH--AKLILRC-KMSSSSSS--LTQSITLPSQPNEPVL 58

Query: 62  VVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFL 121
           V A  G+S SDFR A++S+LF+ WL+NL+SE+GILA+G M LKQVLIQGVDMFGKRIGFL
Sbjct: 59  VSATAGISSSDFRDAIDSSLFRNWLRNLESESGILADGSMTLKQVLIQGVDMFGKRIGFL 118

Query: 122 KFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAG 181
           KFKADIF KETGQKVPGIVFARGPAVAVLILL+S+GETYA+LTEQVRVPTG+++LELPAG
Sbjct: 119 KFKADIFDKETGQKVPGIVFARGPAVAVLILLESDGETYAVLTEQVRVPTGKIVLELPAG 178

Query: 182 MLDDDKGDFVGTAVREVS 199
           MLDDDKGDFVGTAVREV 
Sbjct: 179 MLDDDKGDFVGTAVREVE 196


>sp|O61902|NDX2_CAEEL Putative nudix hydrolase 2 OS=Caenorhabditis elegans GN=ndx-2 PE=3
           SV=1
          Length = 223

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 45/81 (55%)

Query: 104 KQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAIL 163
           ++V+  G  +  +++GF      +   ++  +    V A    V+++  +  +G+ Y +L
Sbjct: 34  QEVVWNGKWIQTRQVGFKTHTGQVGVWQSVHRNTKPVEASADGVSIIARVRKQGKLYIVL 93

Query: 164 TEQVRVPTGRVILELPAGMLD 184
            +Q R+P G++ LELPAG++D
Sbjct: 94  VKQYRIPCGKLCLELPAGLID 114


>sp|Q9P791|YN8C_SCHPO Uncharacterized Nudix hydrolase P35G2.12 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=SPBP35G2.12 PE=3 SV=1
          Length = 205

 Score = 35.8 bits (81), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREV 198
           AVA+L ++  +G  + +  +Q R P G+  +E+PAG++ D K      A+RE+
Sbjct: 55  AVAILAIVPIDGSPHVLCQKQFRPPIGKFCIEIPAGLV-DSKESCEDAAIREL 106


>sp|P0C548|PLPL2_RAT Patatin-like phospholipase domain-containing protein 2 OS=Rattus
           norvegicus GN=Pnpla2 PE=2 SV=1
          Length = 478

 Score = 30.4 bits (67), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 52  IPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGV 111
           +PS+LS+ V +  A  L      CA  S     W++N  S    LA  +   +Q+L+   
Sbjct: 383 LPSRLSEQVELRRAQSLPSVPLSCATYSEALPNWVRNNLSLGDALAKWEECQRQLLL--- 439

Query: 112 DMFGKRIGF 120
            +F   + F
Sbjct: 440 GLFCTNVAF 448


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,533,611
Number of Sequences: 539616
Number of extensions: 3065935
Number of successful extensions: 6794
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6778
Number of HSP's gapped (non-prelim): 21
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)