Query 028360
Match_columns 210
No_of_seqs 240 out of 1705
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 10:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03143 nudix hydrolase; Prov 100.0 5.3E-43 1.1E-47 312.9 22.8 172 33-206 19-190 (291)
2 PRK15009 GDP-mannose pyrophosp 99.8 1.4E-19 3.1E-24 153.0 14.2 96 105-206 4-109 (191)
3 PRK11762 nudE adenosine nucleo 99.8 2E-19 4.4E-24 149.9 14.6 98 104-207 7-106 (185)
4 PRK10729 nudF ADP-ribose pyrop 99.8 3.4E-19 7.3E-24 151.8 15.0 96 106-207 9-114 (202)
5 KOG3041 Nucleoside diphosphate 99.8 8E-19 1.7E-23 149.4 11.7 69 135-205 65-133 (225)
6 TIGR00052 nudix-type nucleosid 99.8 2.4E-18 5.2E-23 144.6 13.0 96 107-207 5-109 (185)
7 cd03424 ADPRase_NUDT5 ADP-ribo 99.5 5.9E-14 1.3E-18 109.7 8.1 61 143-207 1-61 (137)
8 PRK09438 nudB dihydroneopterin 99.4 2.7E-13 5.9E-18 107.9 7.0 57 143-206 6-62 (148)
9 cd03672 Dcp2p mRNA decapping e 99.4 3.5E-13 7.5E-18 108.8 6.9 55 146-207 3-57 (145)
10 cd04700 DR1025_like DR1025 fro 99.4 5.7E-13 1.2E-17 106.4 7.8 58 145-207 14-71 (142)
11 cd04683 Nudix_Hydrolase_24 Mem 99.4 3.1E-13 6.8E-18 103.1 5.8 57 146-207 2-58 (120)
12 cd04679 Nudix_Hydrolase_20 Mem 99.4 6.6E-13 1.4E-17 102.4 7.1 59 145-208 3-61 (125)
13 cd03671 Ap4A_hydrolase_plant_l 99.4 7.9E-13 1.7E-17 105.7 6.9 57 144-207 3-59 (147)
14 cd04670 Nudix_Hydrolase_12 Mem 99.4 1.2E-12 2.6E-17 101.2 6.6 57 145-207 3-59 (127)
15 cd04691 Nudix_Hydrolase_32 Mem 99.4 1.5E-12 3.3E-17 100.3 6.9 48 156-206 10-58 (117)
16 cd04681 Nudix_Hydrolase_22 Mem 99.4 1.7E-12 3.6E-17 100.4 7.2 57 146-207 3-59 (130)
17 cd04669 Nudix_Hydrolase_11 Mem 99.4 2E-12 4.3E-17 100.2 7.2 56 147-208 3-58 (121)
18 cd04684 Nudix_Hydrolase_25 Con 99.4 2.1E-12 4.6E-17 98.6 7.1 56 146-207 2-57 (128)
19 cd04671 Nudix_Hydrolase_13 Mem 99.3 2.7E-12 5.8E-17 100.5 7.7 57 147-208 3-59 (123)
20 cd04673 Nudix_Hydrolase_15 Mem 99.3 1.7E-12 3.6E-17 98.6 6.1 56 146-207 2-57 (122)
21 cd03675 Nudix_Hydrolase_2 Cont 99.3 1.7E-12 3.7E-17 101.0 6.2 47 156-207 10-56 (134)
22 cd04511 Nudix_Hydrolase_4 Memb 99.3 2.8E-12 6E-17 100.2 7.2 49 156-208 23-71 (130)
23 cd03430 GDPMH GDP-mannose glyc 99.3 3E-12 6.6E-17 102.7 7.5 58 146-208 14-71 (144)
24 PF00293 NUDIX: NUDIX domain; 99.3 1.9E-12 4E-17 98.8 5.9 58 145-206 3-61 (134)
25 cd03673 Ap6A_hydrolase Diadeno 99.3 2.3E-12 4.9E-17 98.8 6.3 58 146-208 3-60 (131)
26 cd04680 Nudix_Hydrolase_21 Mem 99.3 2.1E-12 4.6E-17 97.9 6.1 54 146-207 2-55 (120)
27 PRK10707 putative NUDIX hydrol 99.3 3.9E-12 8.4E-17 107.6 7.2 63 142-207 28-93 (190)
28 cd03426 CoAse Coenzyme A pyrop 99.3 5E-12 1.1E-16 102.6 7.3 62 145-207 3-65 (157)
29 cd03674 Nudix_Hydrolase_1 Memb 99.3 5.2E-12 1.1E-16 99.9 7.0 56 145-207 3-58 (138)
30 cd03427 MTH1 MutT homolog-1 (M 99.3 5.8E-12 1.3E-16 98.2 7.0 56 148-208 4-59 (137)
31 cd04682 Nudix_Hydrolase_23 Mem 99.3 5.1E-12 1.1E-16 97.4 6.6 57 147-207 3-61 (122)
32 KOG0648 Predicted NUDIX hydrol 99.3 1.9E-12 4.1E-17 116.3 4.2 142 56-207 28-175 (295)
33 PRK15472 nucleoside triphospha 99.3 7.8E-12 1.7E-16 98.8 7.3 57 147-207 6-63 (141)
34 cd04696 Nudix_Hydrolase_37 Mem 99.3 6.4E-12 1.4E-16 97.1 6.5 55 146-207 4-58 (125)
35 cd04666 Nudix_Hydrolase_9 Memb 99.3 9.7E-12 2.1E-16 97.4 7.4 57 147-208 3-59 (122)
36 cd03428 Ap4A_hydrolase_human_l 99.3 7.3E-12 1.6E-16 96.6 5.6 56 146-207 4-59 (130)
37 PRK15434 GDP-mannose mannosyl 99.3 1.2E-11 2.5E-16 102.1 7.1 57 146-207 19-75 (159)
38 cd04662 Nudix_Hydrolase_5 Memb 99.3 2E-11 4.3E-16 97.8 7.8 61 146-207 2-65 (126)
39 cd04687 Nudix_Hydrolase_28 Mem 99.3 1.9E-11 4.2E-16 94.7 7.6 56 146-208 3-58 (128)
40 TIGR02705 nudix_YtkD nucleosid 99.3 1.6E-11 3.4E-16 101.5 7.3 56 142-207 22-77 (156)
41 cd04686 Nudix_Hydrolase_27 Mem 99.2 1.3E-11 2.9E-16 97.0 6.6 52 146-206 2-53 (131)
42 cd03429 NADH_pyrophosphatase N 99.2 8.5E-12 1.8E-16 98.2 5.5 56 146-207 2-57 (131)
43 cd04699 Nudix_Hydrolase_39 Mem 99.2 1.3E-11 2.9E-16 94.2 6.4 59 146-208 3-62 (129)
44 cd04690 Nudix_Hydrolase_31 Mem 99.2 1.9E-11 4.1E-16 92.8 6.7 53 147-207 3-55 (118)
45 cd04677 Nudix_Hydrolase_18 Mem 99.2 2.2E-11 4.7E-16 94.0 7.1 56 145-208 8-63 (132)
46 cd04676 Nudix_Hydrolase_17 Mem 99.2 2.4E-11 5.2E-16 92.2 6.6 55 145-207 3-57 (129)
47 PLN02325 nudix hydrolase 99.2 3.1E-11 6.8E-16 97.1 7.6 49 156-208 19-67 (144)
48 cd04664 Nudix_Hydrolase_7 Memb 99.2 2.5E-11 5.5E-16 94.0 6.9 56 146-206 3-59 (129)
49 cd04695 Nudix_Hydrolase_36 Mem 99.2 2.2E-11 4.8E-16 95.2 6.4 45 160-207 15-59 (131)
50 cd04672 Nudix_Hydrolase_14 Mem 99.2 2.3E-11 5.1E-16 93.8 6.3 53 146-207 4-56 (123)
51 cd04693 Nudix_Hydrolase_34 Mem 99.2 2.8E-11 6E-16 93.7 6.2 57 146-207 2-60 (127)
52 PRK00714 RNA pyrophosphohydrol 99.2 4.1E-11 9E-16 97.5 7.2 57 144-207 8-64 (156)
53 cd04678 Nudix_Hydrolase_19 Mem 99.2 4.2E-11 9.2E-16 92.6 6.9 59 145-208 3-61 (129)
54 COG1051 ADP-ribose pyrophospha 99.2 3.7E-11 8.1E-16 97.4 6.7 57 145-207 11-67 (145)
55 PRK10546 pyrimidine (deoxy)nuc 99.2 6.4E-11 1.4E-15 92.1 6.8 50 156-208 14-63 (135)
56 PRK10776 nucleoside triphospha 99.2 9.9E-11 2.2E-15 89.2 7.7 58 147-207 6-63 (129)
57 cd04694 Nudix_Hydrolase_35 Mem 99.2 7.9E-11 1.7E-15 95.2 7.3 59 146-208 3-62 (143)
58 cd04689 Nudix_Hydrolase_30 Mem 99.2 7.8E-11 1.7E-15 90.8 6.5 52 147-207 4-55 (125)
59 cd04692 Nudix_Hydrolase_33 Mem 99.2 8.2E-11 1.8E-15 93.5 6.7 60 145-207 3-66 (144)
60 cd04688 Nudix_Hydrolase_29 Mem 99.1 1.1E-10 2.4E-15 90.1 7.2 43 161-208 14-56 (126)
61 cd04697 Nudix_Hydrolase_38 Mem 99.1 7.2E-11 1.6E-15 91.9 6.0 56 146-207 2-61 (126)
62 cd04674 Nudix_Hydrolase_16 Mem 99.1 1.7E-10 3.8E-15 90.9 8.0 45 161-207 17-61 (118)
63 TIGR00586 mutt mutator mutT pr 99.1 1.8E-10 3.9E-15 88.2 7.7 55 150-207 9-63 (128)
64 PRK00241 nudC NADH pyrophospha 99.1 6.4E-11 1.4E-15 104.5 5.7 57 144-207 132-188 (256)
65 cd03425 MutT_pyrophosphohydrol 99.1 1.8E-10 3.9E-15 86.5 7.3 57 148-207 4-60 (124)
66 cd04665 Nudix_Hydrolase_8 Memb 99.1 1.5E-10 3.3E-15 91.0 7.0 51 146-206 2-52 (118)
67 cd04667 Nudix_Hydrolase_10 Mem 99.1 1E-10 2.3E-15 88.8 5.6 43 156-206 10-52 (112)
68 cd02883 Nudix_Hydrolase Nudix 99.1 3.5E-10 7.7E-15 83.7 6.8 56 146-207 2-57 (123)
69 cd04685 Nudix_Hydrolase_26 Mem 99.1 4.2E-10 9E-15 89.6 7.5 57 146-206 2-59 (133)
70 cd02885 IPP_Isomerase Isopente 99.0 4.4E-10 9.4E-15 91.8 6.3 59 145-207 31-91 (165)
71 PRK15393 NUDIX hydrolase YfcD; 99.0 5.9E-10 1.3E-14 92.9 6.4 56 145-206 38-97 (180)
72 KOG3084 NADH pyrophosphatase I 99.0 4.6E-10 9.9E-15 101.8 5.9 62 143-208 185-246 (345)
73 cd04661 MRP_L46 Mitochondrial 99.0 6.5E-10 1.4E-14 87.7 5.9 44 161-207 15-58 (132)
74 PRK05379 bifunctional nicotina 99.0 6.7E-10 1.4E-14 101.3 6.5 48 156-207 213-260 (340)
75 PRK03759 isopentenyl-diphospha 99.0 1.3E-09 2.9E-14 90.8 6.3 59 145-207 35-95 (184)
76 COG0494 MutT NTP pyrophosphohy 98.9 1.9E-09 4.1E-14 80.5 6.4 43 162-207 26-69 (161)
77 cd04663 Nudix_Hydrolase_6 Memb 98.9 6E-09 1.3E-13 83.4 7.7 37 167-206 19-55 (126)
78 PLN02709 nudix hydrolase 98.9 5.5E-09 1.2E-13 90.9 7.1 64 143-206 32-99 (222)
79 PRK08999 hypothetical protein; 98.8 1.4E-08 3E-13 90.3 7.5 57 148-207 8-64 (312)
80 TIGR02150 IPP_isom_1 isopenten 98.8 1.3E-08 2.7E-13 83.0 5.8 56 146-207 29-86 (158)
81 cd03676 Nudix_hydrolase_3 Memb 98.7 3.7E-08 8E-13 81.4 6.8 34 173-207 63-97 (180)
82 cd03670 ADPRase_NUDT9 ADP-ribo 98.6 6.6E-08 1.4E-12 82.1 6.3 45 156-205 46-90 (186)
83 COG2816 NPY1 NTP pyrophosphohy 98.5 1.3E-07 2.9E-12 84.7 5.1 57 145-208 145-201 (279)
84 KOG3069 Peroxisomal NUDIX hydr 98.2 3.1E-06 6.6E-11 74.4 7.0 63 144-206 43-106 (246)
85 KOG2839 Diadenosine and diphos 98.2 3.7E-06 8.1E-11 68.9 6.3 44 159-206 24-67 (145)
86 PLN02791 Nudix hydrolase homol 98.0 1.3E-05 2.8E-10 80.7 6.5 59 146-207 34-94 (770)
87 KOG4432 Uncharacterized NUDIX 97.9 1.4E-05 3.1E-10 72.7 4.3 62 143-207 25-111 (405)
88 PLN02552 isopentenyl-diphospha 97.8 3E-05 6.5E-10 68.6 6.0 57 145-206 57-133 (247)
89 COG4119 Predicted NTP pyrophos 97.7 6.8E-05 1.5E-09 61.0 5.8 61 145-207 4-68 (161)
90 KOG4432 Uncharacterized NUDIX 97.5 0.00039 8.5E-09 63.5 7.7 73 131-207 216-316 (405)
91 cd03431 DNA_Glycosylase_C DNA 97.3 0.00091 2E-08 49.8 6.3 45 156-203 13-57 (118)
92 KOG4195 Transient receptor pot 96.3 0.0054 1.2E-07 54.1 4.4 28 174-202 150-177 (275)
93 PLN02839 nudix hydrolase 95.0 0.066 1.4E-06 50.2 6.6 57 147-206 206-266 (372)
94 PF14815 NUDIX_4: NUDIX domain 92.9 0.12 2.6E-06 39.2 3.4 50 154-207 6-55 (114)
95 KOG2937 Decapping enzyme compl 92.7 0.028 6.1E-07 51.9 -0.4 42 161-207 97-138 (348)
96 PF13869 NUDIX_2: Nucleotide h 90.9 0.79 1.7E-05 39.4 6.5 50 149-205 49-98 (188)
97 KOG1689 mRNA cleavage factor I 84.9 3.1 6.6E-05 35.7 6.2 49 148-203 74-122 (221)
98 COG1443 Idi Isopentenyldiphosp 81.2 2 4.2E-05 36.8 3.7 58 146-207 35-94 (185)
99 PF03487 IL13: Interleukin-13; 44.3 20 0.00044 23.6 2.0 25 177-202 12-36 (43)
100 KOG4548 Mitochondrial ribosoma 34.2 76 0.0016 28.7 4.7 30 174-204 152-182 (263)
101 PRK10880 adenine DNA glycosyla 29.9 73 0.0016 29.7 4.1 40 156-205 241-280 (350)
102 PF01863 DUF45: Protein of unk 29.6 98 0.0021 25.4 4.5 33 57-91 10-42 (205)
103 PF13014 KH_3: KH domain 29.3 44 0.00096 21.0 1.9 18 192-209 10-27 (43)
104 PF12123 Amidase02_C: N-acetyl 28.6 1.2E+02 0.0026 20.2 3.9 34 47-88 5-38 (45)
105 COG4112 Predicted phosphoester 27.9 49 0.0011 28.4 2.3 26 180-205 97-128 (203)
106 PF06615 DUF1147: Protein of u 24.3 72 0.0016 21.9 2.2 23 162-184 17-39 (59)
107 PF13355 DUF4101: Protein of u 21.9 3.8E+02 0.0083 20.7 6.6 49 64-115 16-66 (117)
108 cd02393 PNPase_KH Polynucleoti 21.4 73 0.0016 21.8 1.9 18 192-209 21-38 (61)
No 1
>PLN03143 nudix hydrolase; Provisional
Probab=100.00 E-value=5.3e-43 Score=312.90 Aligned_cols=172 Identities=77% Similarity=1.119 Sum_probs=158.0
Q ss_pred eeeecCCCCCCCCceeeEEecCCCCCCeEEEeCCCCChhhHhhhhcchhHHHHHHHHhhccccccCCCcceEEEEEeeEE
Q 028360 33 VCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVD 112 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV~V~~~~~~s~~~~~~~l~~~~Fk~Wl~~~~~~~~~~~~~~~~L~~~~i~s~~ 112 (210)
+++||++.++ ++++|||+|++...+|+|.++++++++||.+++++++|++|+++++++++++++++|.|+++.||++|
T Consensus 19 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~vd 96 (291)
T PLN03143 19 KEASSSSSSS--PLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQWLKNLQSESGILAYGSMSLKQVLIQGVD 96 (291)
T ss_pred ehhccCCCCC--CceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHHHHHHhhhccccccCCCceeEEEEEEEEe
Confidence 3444444444 79999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCEEEEEEEEEEcCCCcEEeEEEEEeCCEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHH
Q 028360 113 MFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVG 192 (210)
Q Consensus 113 ~f~~r~gfl~l~~d~v~l~~G~~~~~~v~~r~~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~ 192 (210)
+||+|.||++++++.++++||+.+++.++.++++|+|+++++.+++.++||++|+|+|.+.+.||||||++|+++|++.+
T Consensus 97 ~fg~~~gflkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~ 176 (291)
T PLN03143 97 MFGKRIGFLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVG 176 (291)
T ss_pred cccCceeEEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHH
Confidence 99999999999999999999999999999999999999886646677899999999999999999999999975489999
Q ss_pred HHHHHHHHHhCCce
Q 028360 193 TAVREVSFILLLDF 206 (210)
Q Consensus 193 aA~REl~EETGi~v 206 (210)
||+||++|||||.+
T Consensus 177 aA~REL~EETG~~~ 190 (291)
T PLN03143 177 TAVREVEEETGIKL 190 (291)
T ss_pred HHHHHHHHHHCCcc
Confidence 99999999999974
No 2
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.82 E-value=1.4e-19 Score=152.99 Aligned_cols=96 Identities=18% Similarity=0.264 Sum_probs=82.2
Q ss_pred EEEEeeEEEEeeeCCEEEEEEEEE--EcCCCcE--EeEEEEEeCCEEEEEEEEcCCCceEEEEEEEeecCC------CCe
Q 028360 105 QVLIQGVDMFGKRIGFLKFKADIF--CKETGQK--VPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPT------GRV 174 (210)
Q Consensus 105 ~~~i~s~~~f~~r~gfl~l~~d~v--~l~~G~~--~~~~v~~r~~aV~VLvi~~~~g~~~vlLvrQ~R~p~------~~~ 174 (210)
.+.|.+..+|. ++|+++..+.+ .+|||.. ..+.++.++++|+|++++.++++ +||++|||+++ +.+
T Consensus 4 ~~~~~~~~~~~--~~~~~v~~~~~~~~~pdG~~~~~~r~vv~~~~~v~Vl~~~~~~~~--vvLvrQyR~~v~~~~~~~~~ 79 (191)
T PRK15009 4 QITLIKDKILS--DNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNAKKKT--VVLIRQFRVATWVNGNESGQ 79 (191)
T ss_pred ceEEEEEEEEe--CCeEEEEEEEEEEECCCCCccceEEEEEEECCEEEEEEEECCCCE--EEEEEcccccccccCCCCce
Confidence 46778888888 89999999774 5699984 46678888999999988753445 99999999998 889
Q ss_pred EEEeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 175 ILELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 175 ~wElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
.||||||.+|+ |++++||+|||+||||+.+
T Consensus 80 ~lElPAG~vd~--~~p~~aA~REL~EETGy~a 109 (191)
T PRK15009 80 LIETCAGLLDN--DEPEVCIRKEAIEETGYEV 109 (191)
T ss_pred EEEEeccccCC--CCHHHHHHHHHHHhhCCcc
Confidence 99999999995 4699999999999999975
No 3
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.82 E-value=2e-19 Score=149.89 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=83.3
Q ss_pred EEEEEeeEEEEeeeCCEEEEEEEEEEcCCCcEEeEEEEE--eCCEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeece
Q 028360 104 KQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFA--RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAG 181 (210)
Q Consensus 104 ~~~~i~s~~~f~~r~gfl~l~~d~v~l~~G~~~~~~v~~--r~~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG 181 (210)
.+..+++..+|. ++|+++..+.+..+||......+.. ++++|+|+++++ +++ +||++|+|++.+.+.||||||
T Consensus 7 ~~~~~~~~~v~~--~~~~~v~~~~~~~~~G~~~~~~~v~~~~~~~v~v~~~~~-~~~--vlLvrq~r~~~~~~~~elPaG 81 (185)
T PRK11762 7 KPEILNRETVAK--SRLFRVESVDLEFSNGVERVYERMRPSGRGAVMIVPILD-DDT--LLLIREYAAGTERYELGFPKG 81 (185)
T ss_pred CCEEeeEEEEEe--CCEEEEEEEEEEcCCCCEEEEEEEecCCCCEEEEEEEeC-CCE--EEEEEeecCCCCCcEEEccce
Confidence 345677889998 8999999999999999876544443 345788888865 555 999999999999889999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 182 MLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 182 ~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.+|+| |++++||+||++||||+++.
T Consensus 82 ~ve~g-E~~~~aA~REl~EEtG~~~~ 106 (185)
T PRK11762 82 LIDPG-ETPLEAANRELKEEVGFGAR 106 (185)
T ss_pred eCCCC-CCHHHHHHHHHHHHHCCCCc
Confidence 99998 99999999999999999864
No 4
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.82 E-value=3.4e-19 Score=151.79 Aligned_cols=96 Identities=26% Similarity=0.326 Sum_probs=79.9
Q ss_pred EEEeeEEEEeeeCCEEEEEEEEE--EcCCCc---EEeEEEEEeCCEEEEEEEEcCCCceEEEEEEEeecCCC-----CeE
Q 028360 106 VLIQGVDMFGKRIGFLKFKADIF--CKETGQ---KVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTG-----RVI 175 (210)
Q Consensus 106 ~~i~s~~~f~~r~gfl~l~~d~v--~l~~G~---~~~~~v~~r~~aV~VLvi~~~~g~~~vlLvrQ~R~p~~-----~~~ 175 (210)
..+++..+|. +|+++..+.+ .++||. ...+.++.++++|+|+++++++++ +||++|||++++ .++
T Consensus 9 ~~~~~~~v~~---~~~~v~~~~~~~~~~~G~~~~~~~~~vv~~~~~V~il~~~~~~~~--vlLvrQyR~~~~~~~~~~~~ 83 (202)
T PRK10729 9 EIIARETLYR---GFFSLDLYRFRHRLFNGEMSGEVRREIFERGHAAVLLPFDPVRDE--VVLIEQIRIAAYDTSETPWL 83 (202)
T ss_pred EEEEEEEEEc---CeEEEEEEEEEEEecCCccccEEeEEEEEcCCeEEEEEEECCCCE--EEEEEeeecccccCCCCCeE
Confidence 4567788887 4887866554 357887 567788889999999999763455 999999999985 479
Q ss_pred EEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 176 LELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 176 wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
||+|||++|+| |++.+||+|||.|||||.+.
T Consensus 84 lE~PAG~vd~g-E~p~~aA~REL~EETGy~a~ 114 (202)
T PRK10729 84 LEMVAGMIEEG-ESVEDVARREAIEEAGLIVG 114 (202)
T ss_pred EEccceEcCCC-CCHHHHHHHHHHHHhCceee
Confidence 99999999998 99999999999999999754
No 5
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.79 E-value=8e-19 Score=149.45 Aligned_cols=69 Identities=42% Similarity=0.714 Sum_probs=63.9
Q ss_pred EEeEEEEEeCCEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCc
Q 028360 135 KVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLD 205 (210)
Q Consensus 135 ~~~~~v~~r~~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~ 205 (210)
..++ +..+.++|+||+++..+|+.|+||++|+|.|.|+.++|||||++|+| |++++||.|||+|||||.
T Consensus 65 Rttr-~ea~~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~g-e~~~~aAiREl~EEtGy~ 133 (225)
T KOG3041|consen 65 RTTR-VEARADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDG-EDFEGAAIRELEEETGYK 133 (225)
T ss_pred eccc-ccccCCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCC-CchHHHHHHHHHHHhCcc
Confidence 3345 67788999999999989999999999999999999999999999998 999999999999999996
No 6
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.78 E-value=2.4e-18 Score=144.57 Aligned_cols=96 Identities=24% Similarity=0.251 Sum_probs=79.5
Q ss_pred EEeeEEEEeeeCCEEEEEEEE-EE-cCCC--cEEeEEEEEeCCEEEEEEEEcCCCceEEEEEEEeecCC-----CCeEEE
Q 028360 107 LIQGVDMFGKRIGFLKFKADI-FC-KETG--QKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPT-----GRVILE 177 (210)
Q Consensus 107 ~i~s~~~f~~r~gfl~l~~d~-v~-l~~G--~~~~~~v~~r~~aV~VLvi~~~~g~~~vlLvrQ~R~p~-----~~~~wE 177 (210)
.+.+..+|. +.|+.+..+. +. .++| ....+.++.++++|+|++++.++++ ++|++|+|++. +.+.||
T Consensus 5 ~l~~~~v~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~v~vl~~~~~~~~--vlLvrq~R~~~~~~~~~~~~le 80 (185)
T TIGR00052 5 IIIKDTLYS--GFFSLLHNIFYHRLFKGGESIRVTREIYDRGNAAAVLLYDPKKDT--VVLIEQFRIAAYVNGEEPWLLE 80 (185)
T ss_pred EEEEEEEec--CCcEEEEEEEEEEeeCCCCCceEEEEEEEcCCeEEEEEEECCCCE--EEEEECceeeeeecCCcceEEE
Confidence 466788888 8899988643 33 3466 4568888888999999988763455 99999999987 678999
Q ss_pred eeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 178 LPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 178 lPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|||++|+| |++++||+|||+||||+.+.
T Consensus 81 lPaG~ve~g-E~~~~aA~REl~EEtG~~~~ 109 (185)
T TIGR00052 81 LSAGMVEKG-ESPEDVARREAIEEAGYQVK 109 (185)
T ss_pred ECcEecCCC-CCHHHHHHHHccccccceec
Confidence 999999998 99999999999999999864
No 7
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.51 E-value=5.9e-14 Score=109.68 Aligned_cols=61 Identities=38% Similarity=0.429 Sum_probs=52.9
Q ss_pred eCCEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 143 r~~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
|..+|++++++. +++ ++|++|+|.+.++..|++|||.+|.| |++.+||+||++||||+++.
T Consensus 1 ~~~~v~v~~~~~-~~~--iLl~~~~~~~~~~~~w~~PgG~ve~g-Es~~~aa~RE~~EE~Gl~~~ 61 (137)
T cd03424 1 HPDAVAVLPYDD-DGK--VVLVRQYRPPVGGWLLELPAGLIDPG-EDPEEAARRELEEETGYEAG 61 (137)
T ss_pred CCCEEEEEEEcC-CCe--EEEEEeeecCCCCEEEEeCCccCCCC-CCHHHHHHHHHHHHHCCCcc
Confidence 356888887766 465 89999999887777899999999998 99999999999999999873
No 8
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.43 E-value=2.7e-13 Score=107.95 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=46.9
Q ss_pred eCCEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 143 r~~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
++.+|++++++. +|+ +||+++.+.+ ..|++|||++|.| |++.+||+||++||||+++
T Consensus 6 ~~~~v~~vi~~~-~~~--vLl~~r~~~~---~~W~lPgG~ve~g-Es~~~aa~REl~EEtGl~~ 62 (148)
T PRK09438 6 RPVSVLVVIYTP-DLG--VLMLQRADDP---DFWQSVTGSLEEG-ETPAQTAIREVKEETGIDV 62 (148)
T ss_pred CceEEEEEEEeC-CCe--EEEEEecCCC---CcEeCCcccCCCC-CCHHHHHHHHHHHHhCcCc
Confidence 467888887765 566 7887765432 3699999999998 9999999999999999987
No 9
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.42 E-value=3.5e-13 Score=108.79 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=44.6
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.++++++++++++ +||++|++.+ .|+||||.+|.| |++.+||+|||+||||+++.
T Consensus 3 ~~gaii~~~~~~~--vLLvr~~~~~----~W~lPGG~ve~g-Es~~~AA~REl~EETGl~v~ 57 (145)
T cd03672 3 VYGAIILNEDLDK--VLLVKGWKSK----SWSFPKGKINKD-EDDHDCAIREVYEETGFDIS 57 (145)
T ss_pred eeEEEEEeCCCCE--EEEEEecCCC----CEECCCccCCCC-cCHHHHHHHHHHHhhCccce
Confidence 4556666552344 8999887653 599999999998 99999999999999999865
No 10
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.41 E-value=5.7e-13 Score=106.39 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=47.7
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.+|++++++. +++ +||+++ +.+.+...|++|||.+|+| |++.+||+||++||||+++.
T Consensus 14 ~av~~vv~~~-~~~--vLL~~r-~~~~~~~~w~lPgG~ve~g-Et~~~aa~REl~EEtGl~~~ 71 (142)
T cd04700 14 RAAGAVILNE-RND--VLLVQE-KGGPKKGLWHIPSGAVEDG-EFPQDAAVREACEETGLRVR 71 (142)
T ss_pred eeEEEEEEeC-CCc--EEEEEE-cCCCCCCeEECCceecCCC-CCHHHHHHHHHHHhhCceee
Confidence 5777777764 566 788765 5544566899999999998 99999999999999999865
No 11
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.41 E-value=3.1e-13 Score=103.14 Aligned_cols=57 Identities=30% Similarity=0.296 Sum_probs=46.5
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|.++++ + +|+ +||+++.+.+.....|++|||.+|+| |++.+||+||++||||+++.
T Consensus 2 ~v~~vi~-~-~~~--vLL~~r~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~v~ 58 (120)
T cd04683 2 AVYVLLR-R-DDE--VLLQRRANTGYMDGQWALPAGHLEKG-EDAVTAAVREAREEIGVTLD 58 (120)
T ss_pred cEEEEEE-E-CCE--EEEEEccCCCCCCCeEeCCccccCCC-CCHHHHHHHHHHHHHCCccC
Confidence 4554443 3 465 89998877665566899999999998 99999999999999999865
No 12
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=6.6e-13 Score=102.41 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=47.3
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
.+|+++++.. +++ +||+++.+.+. ...|++|||.+|+| |++.+||+||++||||+++..
T Consensus 3 ~~~~~~i~~~-~~~--vLL~~r~~~~~-~~~w~lPgG~ve~g-Et~~eaa~RE~~EEtGl~~~~ 61 (125)
T cd04679 3 VGCGAAILRD-DGK--LLLVKRLRAPE-AGHWGIPGGKVDWM-EAVEDAVVREIEEETGLSIHS 61 (125)
T ss_pred eEEEEEEECC-CCE--EEEEEecCCCC-CCeEeCCeeeccCC-CCHHHHHHHHHHHHHCCCccc
Confidence 3566666644 565 88888876543 45799999999998 999999999999999998753
No 13
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.39 E-value=7.9e-13 Score=105.65 Aligned_cols=57 Identities=25% Similarity=0.382 Sum_probs=48.6
Q ss_pred CCEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 144 GPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 144 ~~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+.+|++++++. +++ +||+++.+.+ ..|++|+|++|+| |++.+||.||++||||+++.
T Consensus 3 ~~~v~~ii~~~-~~~--vLL~~r~~~~---~~W~~PgG~~e~g-E~~~~aA~REv~EEtGl~~~ 59 (147)
T cd03671 3 RPNVGVVLFNE-DGK--VFVGRRIDTP---GAWQFPQGGIDEG-EDPEQAALRELEEETGLDPD 59 (147)
T ss_pred CceEEEEEEeC-CCE--EEEEEEcCCC---CCEECCcCCCCCC-cCHHHHHHHHHHHHHCCCcC
Confidence 46788787765 565 9999988776 4799999999998 99999999999999999853
No 14
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.37 E-value=1.2e-12 Score=101.18 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=44.7
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.+|++++++. +++ +||+++.. + ....|++|||++|.| |++.+||.||++||||+++.
T Consensus 3 ~~~~~~v~~~-~~~--vLl~~r~~-~-~~~~w~~PGG~ve~g-Et~~~aa~RE~~EE~Gl~~~ 59 (127)
T cd04670 3 VGVGGLVLNE-KNE--VLVVQERN-K-TPNGWKLPGGLVDPG-EDIFDGAVREVLEETGIDTE 59 (127)
T ss_pred eEEEEEEEcC-CCe--EEEEEccC-C-CCCcEECCCccCCCC-CCHHHHHHHHHHHHHCCCcc
Confidence 4566666654 565 77776543 3 345799999999998 99999999999999999864
No 15
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.36 E-value=1.5e-12 Score=100.31 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=41.2
Q ss_pred CCceEEEEEEEeecCC-CCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 156 EGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 156 ~g~~~vlLvrQ~R~p~-~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
+++ ++|++|.+.+. ....|+||||++|+| |++.+||.||++||||+++
T Consensus 10 ~~~--vLL~rR~~~~~~~~g~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~ 58 (117)
T cd04691 10 DDK--VLLERRSLTKNADPGKLNIPGGHIEAG-ESQEEALLREVQEELGVDP 58 (117)
T ss_pred CCE--EEEEEeCCCCCCCCCeEECcceeecCC-CCHHHHHHHHHHHHHCCCc
Confidence 355 89998876552 456899999999998 9999999999999999985
No 16
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.36 E-value=1.7e-12 Score=100.39 Aligned_cols=57 Identities=32% Similarity=0.469 Sum_probs=46.0
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|++++++. +|+ ++|+++.+.+. ...|++|||.++.| |++.+||.||++||||+++.
T Consensus 3 av~~~i~~~-~~~--vLL~~r~~~~~-~~~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~ 59 (130)
T cd04681 3 AVGVLILNE-DGE--LLVVRRAREPG-KGTLDLPGGFVDPG-ESAEEALIREIREETGLKVT 59 (130)
T ss_pred eEEEEEEcC-CCc--EEEEEecCCCC-CCcEeCCceeecCC-CCHHHHHHHHHHHHhCCccc
Confidence 566666554 566 88888766553 45799999999998 99999999999999999754
No 17
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.36 E-value=2e-12 Score=100.23 Aligned_cols=56 Identities=25% Similarity=0.404 Sum_probs=44.3
Q ss_pred EEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 147 V~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
|+++++.+ +|+ +||+++.+. +...|+||||.+|.| |++.+||+||++||||+++.+
T Consensus 3 ~~~ii~~~-~~~--vLL~~r~~~--~~~~w~lPGG~ve~g-Es~~~a~~REl~EEtGl~~~~ 58 (121)
T cd04669 3 ASIVIIND-QGE--ILLIRRIKP--GKTYYVFPGGGIEEG-ETPEEAAKREALEELGLDVRV 58 (121)
T ss_pred eEEEEEeC-CCE--EEEEEEecC--CCCcEECCceeccCC-CCHHHHHHHHHHHhhCeeEee
Confidence 44555543 465 888886544 335799999999998 999999999999999998754
No 18
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.35 E-value=2.1e-12 Score=98.56 Aligned_cols=56 Identities=20% Similarity=0.142 Sum_probs=45.0
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|.++++ + +++ +||+++.+.+ ....|++|||++|.| |++.+||+||++||||+++.
T Consensus 2 ~~~~ii~-~-~~~--vLl~~~~~~~-~~~~w~lPgG~ve~g-E~~~~aa~RE~~EEtGl~~~ 57 (128)
T cd04684 2 GAYAVIP-R-DGK--LLLIQKNGGP-YEGRWDLPGGGIEPG-ESPEEALHREVLEETGLTVE 57 (128)
T ss_pred eeEEEEE-e-CCE--EEEEEccCCC-CCCeEECCCcccCCC-CCHHHHHHHHHHHHhCcEee
Confidence 3444444 3 355 8888887766 456899999999998 99999999999999999864
No 19
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.35 E-value=2.7e-12 Score=100.45 Aligned_cols=57 Identities=30% Similarity=0.327 Sum_probs=46.2
Q ss_pred EEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 147 V~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
|++++++. +|+ ++|+++.+.+. ...|++|||.+|.| |++.+||+||++||||+++..
T Consensus 3 ~~~vv~~~-~~~--vLl~~r~~~~~-~~~w~lPgG~ve~g-Et~~~aa~REl~EEtG~~~~~ 59 (123)
T cd04671 3 VAAVILNN-QGE--VLLIQEAKRSC-RGKWYLPAGRMEPG-ETIEEAVKREVKEETGLDCEP 59 (123)
T ss_pred EEEEEEcC-CCE--EEEEEecCCCC-CCeEECceeecCCC-CCHHHHHHHHHHHHHCCeeec
Confidence 44555544 565 88988877654 44799999999998 999999999999999998753
No 20
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.34 E-value=1.7e-12 Score=98.60 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=44.6
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|+++++. +++ ++|+++.+.+ +...|++|||.+++| |++.+||.||++||||+++.
T Consensus 2 ~v~~ii~~--~~~--vLl~~r~~~~-~~~~w~~PgG~ie~g-E~~~~aa~RE~~EEtGl~~~ 57 (122)
T cd04673 2 AVGAVVFR--GGR--VLLVRRANPP-DAGLWSFPGGKVELG-ETLEQAALRELLEETGLEAE 57 (122)
T ss_pred cEEEEEEE--CCE--EEEEEEcCCC-CCCeEECCCcccCCC-CCHHHHHHHHHHHhhCcEee
Confidence 34445443 355 8888887654 345799999999998 99999999999999999864
No 21
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.34 E-value=1.7e-12 Score=101.02 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=40.8
Q ss_pred CCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 156 ~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+++ +||+++.+. +...|++|||.+|+| |++.+||.||++||||+++.
T Consensus 10 ~~~--vLlv~r~~~--~~~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~ 56 (134)
T cd03675 10 DGR--FLLVEEETD--GGLVFNQPAGHLEPG-ESLIEAAVRETLEETGWHVE 56 (134)
T ss_pred CCE--EEEEEEccC--CCceEECCCccCCCC-CCHHHHHHHHHHHHHCcccc
Confidence 465 889888765 445799999999998 99999999999999999864
No 22
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.34 E-value=2.8e-12 Score=100.22 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=41.9
Q ss_pred CCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 156 ~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
+++ +||++|.+.+ ....|++|||++|.| |++++||+||++||||+++.+
T Consensus 23 ~~~--vLL~kr~~~~-~~g~w~lPgG~ve~g-E~~~~a~~REl~EEtGl~~~~ 71 (130)
T cd04511 23 EGK--VLLCRRAIEP-RHGFWTLPAGFMENG-ETTEQGALRETWEEAGARVEI 71 (130)
T ss_pred CCE--EEEEEecCCC-CCCeEECCcccccCC-CCHHHHHHHHHHHHhCCEEEe
Confidence 455 8999987655 345799999999998 999999999999999998754
No 23
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.34 E-value=3e-12 Score=102.67 Aligned_cols=58 Identities=17% Similarity=0.329 Sum_probs=45.8
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
+|++++++. +|+ +||+++.+.+. ...|++|||++|.| |++.+||+||++||||+++.+
T Consensus 14 ~v~~vI~~~-~g~--vLl~~R~~~p~-~g~w~lPGG~ve~g-Es~~~aa~RE~~EE~Gl~v~~ 71 (144)
T cd03430 14 SIDLIVENE-DGQ--YLLGKRTNRPA-QGYWFVPGGRIRKN-ETLTEAFERIAKDELGLEFLI 71 (144)
T ss_pred EEEEEEEeC-CCe--EEEEEccCCCC-CCcEECCCceecCC-CCHHHHHHHHHHHHHCCCccc
Confidence 566666644 566 77777655443 45799999999998 999999999999999998753
No 24
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.33 E-value=1.9e-12 Score=98.75 Aligned_cols=58 Identities=29% Similarity=0.348 Sum_probs=48.8
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCC-CCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~-~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
.+|++++++. +++ ++|+++.+.+. ....|++|||.+++| |++.+||+||++||||+++
T Consensus 3 ~~v~~ii~~~-~~~--vLl~~r~~~~~~~~~~~~~pgG~i~~~-E~~~~aa~REl~EE~g~~~ 61 (134)
T PF00293_consen 3 RAVGVIIFNE-DGK--VLLIKRSRSPITFPGYWELPGGGIEPG-ESPEEAARRELKEETGLDV 61 (134)
T ss_dssp EEEEEEEEET-TTE--EEEEEESTTSSSSTTEEESSEEEECTT-SHHHHHHHHHHHHHHSEEE
T ss_pred CEEEEEEEeC-CcE--EEEEEecCCCCCCCCeEecceeeEEcC-CchhhhHHhhhhhccccee
Confidence 4677777766 554 99999888762 345899999999998 9999999999999999986
No 25
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.33 E-value=2.3e-12 Score=98.79 Aligned_cols=58 Identities=24% Similarity=0.192 Sum_probs=44.9
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
+++++++...+++..+||+++.+. ..|++|||++|+| |++.+||.||++||||+++..
T Consensus 3 ~a~~ii~~~~~~~~~vLl~~~~~~----~~w~~PgG~v~~g-Es~~~aa~REl~EEtGl~~~~ 60 (131)
T cd03673 3 AAGGVVFRGSDGGIEVLLIHRPRG----DDWSLPKGKLEPG-ETPPEAAVREVEEETGIRAEV 60 (131)
T ss_pred eEEEEEEEccCCCeEEEEEEcCCC----CcccCCCCccCCC-CCHHHHHHHHHhhhhCCceEe
Confidence 455555655333334888887544 3699999999998 999999999999999998653
No 26
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.33 E-value=2.1e-12 Score=97.94 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=43.1
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|.+++++. +|+ ++|+++...+ .|++|||.++.| |++.+||+||++||||+++.
T Consensus 2 ~~~~~i~~~-~~~--vLL~~r~~~~----~w~~PgG~ve~g-Et~~~aa~REl~EEtG~~~~ 55 (120)
T cd04680 2 GARAVVTDA-DGR--VLLVRHTYGP----GWYLPGGGLERG-ETFAEAARRELLEELGIRLA 55 (120)
T ss_pred ceEEEEECC-CCe--EEEEEECCCC----cEeCCCCcCCCC-CCHHHHHHHHHHHHHCCccc
Confidence 455565544 565 7887764332 699999999998 99999999999999999875
No 27
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.31 E-value=3.9e-12 Score=107.56 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=46.9
Q ss_pred EeCCEEEEEEEEcCCCceEEEEEE---EeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 142 ARGPAVAVLILLDSEGETYAILTE---QVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 142 ~r~~aV~VLvi~~~~g~~~vlLvr---Q~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.++++++|+++...++ ..+||++ |+|+..| .|+||||.+|+++|++++||+||++||||++..
T Consensus 28 ~~~~aavvl~l~~~~~-~~vLl~~R~~~~r~~~G--~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~ 93 (190)
T PRK10707 28 NQRQAAVLIPIVRRPQ-PTLLLTQRSIHLRKHAG--QVAFPGGAVDPTDASLIATALREAQEEVAIPPS 93 (190)
T ss_pred cCCCeEEEEEEEECCC-CEEEEEEeCCcccCCCC--cEEcCCcccCCCcccHHHHHHHHHHHHHCCCcc
Confidence 3567887787764333 2466666 4555544 589999999986578999999999999999753
No 28
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.31 E-value=5e-12 Score=102.62 Aligned_cols=62 Identities=31% Similarity=0.295 Sum_probs=46.5
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCC-CCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~-~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.||.|+++.. ++..+++|+++.+... ....|++|||.+|+|||++.+||.||++||||+++.
T Consensus 3 ~av~v~l~~~-~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~ 65 (157)
T cd03426 3 AAVLVLLVER-EGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPD 65 (157)
T ss_pred eEEEEEEEeC-CCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCcc
Confidence 4566665544 3333588888765432 345799999999996589999999999999999764
No 29
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.30 E-value=5.2e-12 Score=99.93 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=44.3
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.+|+++++++.+++ +||+++.+. ..|.+|||++|+| |++++||.||++||||+++.
T Consensus 3 ~~~~~~v~~~~~~~--vLLv~r~~~----~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~ 58 (138)
T cd03674 3 FTASAFVVNPDRGK--VLLTHHRKL----GSWLQPGGHIDPD-ESLLEAALRELREETGIELL 58 (138)
T ss_pred EEEEEEEEeCCCCe--EEEEEEcCC----CcEECCceecCCC-CCHHHHHHHHHHHHHCCCcc
Confidence 35666767652255 888887542 2599999999998 99999999999999999753
No 30
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.30 E-value=5.8e-12 Score=98.17 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=44.0
Q ss_pred EEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 148 AVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 148 ~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
+.+++.+ +++ +||+++.+.+ ....|++|||.+|.| |++.+||+||++||||+++..
T Consensus 4 ~~~~i~~-~~~--vLL~~r~~~~-~~~~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~~ 59 (137)
T cd03427 4 TLCFIKD-PDK--VLLLNRKKGP-GWGGWNGPGGKVEPG-ETPEECAIRELKEETGLTIDN 59 (137)
T ss_pred EEEEEEE-CCE--EEEEEecCCC-CCCeEeCCceeCCCC-CCHHHHHHHHHHHhhCeEeec
Confidence 3334444 465 7888776655 445799999999998 999999999999999998653
No 31
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.30 E-value=5.1e-12 Score=97.41 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=44.5
Q ss_pred EEEEEEEcCCCceEEEEEEEeecC--CCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 147 VAVLILLDSEGETYAILTEQVRVP--TGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 147 V~VLvi~~~~g~~~vlLvrQ~R~p--~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
|+++++.+ +|+ +||+++.+.| ...+.|++|||.++.| |++.+||.||++||||+++.
T Consensus 3 v~~~~~~~-~g~--vLl~~r~~~~~~~~~g~w~~PgG~ve~g-E~~~~aa~RE~~EE~Gl~~~ 61 (122)
T cd04682 3 VALALLIG-DGR--LLLQLRDDKPGIPYPGHWDLPGGHREGG-ETPLECVLRELLEEIGLTLP 61 (122)
T ss_pred eEEEEEEc-CCE--EEEEEccCCCCCCCCCcEeCCCccccCC-CCHHHHHHHHHHHHhCCccc
Confidence 33444445 466 8888876653 2345899999999998 99999999999999999874
No 32
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=99.29 E-value=1.9e-12 Score=116.28 Aligned_cols=142 Identities=18% Similarity=0.148 Sum_probs=106.4
Q ss_pred CCCCeEEEe-CCCCChhhHhhhhcchhHHHHHHHHhhccc-cccCCCcceEEEEEe-eEEEEeeeCCEEEEEEEEEEcCC
Q 028360 56 LSQPVHVVA-APGLSESDFRCAVESTLFKQWLKNLQSETG-ILANGDMLLKQVLIQ-GVDMFGKRIGFLKFKADIFCKET 132 (210)
Q Consensus 56 ~~~gV~V~~-~~~~s~~~~~~~l~~~~Fk~Wl~~~~~~~~-~~~~~~~~L~~~~i~-s~~~f~~r~gfl~l~~d~v~l~~ 132 (210)
.|+||.|++ .++++...|...+++| ++.|..+.+++.| .++.....+....++ +.+++++...++.+.. |++.
T Consensus 28 ~~ggv~v~~~~~~~d~~~f~~~l~~S-l~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hHae~~~~~l~~---Wl~e 103 (295)
T KOG0648|consen 28 RYGGVVVDIVPEPMDEKLFIEELRAS-LQKWYLQGRKGIWLKLPEELARLVEEAAKYGFDYHHAESLYVMLTS---WLRE 103 (295)
T ss_pred ccCCEEeecccCCCCHHHHHHHHHHH-HHHHHHccCcccceechHHHHhHHHHHHhcCcEEecccccceeeee---eecc
Confidence 489999999 5889999999999977 6899999888877 466555566656555 4555557778888777 4555
Q ss_pred Cc-EEeEEEEEeCCEEEEEEEEcCCCceEEEEEEEe--ecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 133 GQ-KVPGIVFARGPAVAVLILLDSEGETYAILTEQV--RVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 133 G~-~~~~~v~~r~~aV~VLvi~~~~g~~~vlLvrQ~--R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.. ++|.+..+ ..+|+..+++. .++ |+++|. ......+.|.+|.|.|+++ |++.++|.||++||||++..
T Consensus 104 ~~~~lP~~Ash-~vgvg~~V~n~-~~e---VlVv~e~d~~~~~~~~wK~ptG~v~~~-e~i~~gavrEvkeetgid~e 175 (295)
T KOG0648|consen 104 APSTLPANASH-RVGVGAFVLNK-KKE---VLVVQEKDGAVKIRGGWKLPTGRVEEG-EDIWHGAVREVKEETGIDTE 175 (295)
T ss_pred ccccCCCchhh-heeeeeeEecC-Cce---eEEEEecccceeecccccccceEeccc-ccchhhhhhhhHHHhCcchh
Confidence 43 45777664 56777777765 345 455553 3333456899999999998 99999999999999998754
No 33
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.29 E-value=7.8e-12 Score=98.79 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=41.8
Q ss_pred EEEEEEEcCCCceEEEEEEEeec-CCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 147 VAVLILLDSEGETYAILTEQVRV-PTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 147 V~VLvi~~~~g~~~vlLvrQ~R~-p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
|++.++.. +|+ +||+++... ....+.|++|||.+|+| |++.+||.||++||||+++.
T Consensus 6 ~~~~ii~~-~~~--vLl~~R~~~~~~~~g~W~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~ 63 (141)
T PRK15472 6 IVCPLIQN-DGA--YLLCKMADDRGVFPGQWALSGGGVEPG-ERIEEALRREIREELGEQLL 63 (141)
T ss_pred EEEEEEec-CCE--EEEEEecccCCCCCCceeCCcccCCCC-CCHHHHHHHHHHHHHCCcee
Confidence 33344444 565 676664322 12345799999999998 99999999999999999763
No 34
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.29 E-value=6.4e-12 Score=97.06 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=42.8
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|++++++. +|+ ++|+++.+ ....|++|||.+|.| |++.+||+||++||||+++.
T Consensus 4 ~v~~~i~~~-~~~--iLL~r~~~---~~~~w~lPGG~ve~g-Es~~~aa~REl~EEtGl~~~ 58 (125)
T cd04696 4 TVGALIYAP-DGR--ILLVRTTK---WRGLWGVPGGKVEWG-ETLEEALKREFREETGLKLR 58 (125)
T ss_pred EEEEEEECC-CCC--EEEEEccC---CCCcEeCCceeccCC-CCHHHHHHHHHHHHhCCccc
Confidence 455555543 566 78876533 234799999999998 99999999999999999764
No 35
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.28 E-value=9.7e-12 Score=97.41 Aligned_cols=57 Identities=18% Similarity=0.096 Sum_probs=45.0
Q ss_pred EEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 147 V~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
++++++...++..++||+++.+. ..|.+|||.+|.| |++.+||.||++||||+++..
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~~----~~w~~PgG~ve~~-E~~~~aa~RE~~EEtG~~~~~ 59 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRRT----GRWIVPKGGPEKD-ESPAEAAAREAWEEAGVRGKI 59 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecCC----CeEECCCCCcCCC-CCHHHHHHHHHHHHhCCcccc
Confidence 45565654333446899887654 3699999999998 999999999999999998653
No 36
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.26 E-value=7.3e-12 Score=96.62 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=43.2
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+++++++...+++.++||+++.. ..|++|||++++| |++.+||.||++||||+++.
T Consensus 4 ~~g~vi~~~~~~~~~vLl~~~~~-----~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~ 59 (130)
T cd03428 4 SAGAIIYRRLNNEIEYLLLQASY-----GHWDFPKGHVEPG-EDDLEAALRETEEETGITAE 59 (130)
T ss_pred EEEEEEEEecCCCceEEEEEccC-----CcCcCCcCCCCCC-CCHHHHHHHHHHHHHCCChh
Confidence 45666665534444477776543 3599999999998 99999999999999999864
No 37
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.26 E-value=1.2e-11 Score=102.08 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=43.3
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|+++++++ +|+ +||+++...+ ....|+||||.++.| |++++||+||++||||+++.
T Consensus 19 ~v~~vI~~~-~g~--VLL~kR~~~~-~~g~W~lPGG~VE~G-Et~~~Aa~REl~EEtGl~v~ 75 (159)
T PRK15434 19 SLDFIVENS-RGE--FLLGKRTNRP-AQGYWFVPGGRVQKD-ETLEAAFERLTMAELGLRLP 75 (159)
T ss_pred EEEEEEECC-CCE--EEEEEccCCC-CCCcEECCceecCCC-CCHHHHHHHHHHHHHCCccc
Confidence 455555433 465 7777654223 345799999999999 99999999999999999863
No 38
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.25 E-value=2e-11 Score=97.78 Aligned_cols=61 Identities=16% Similarity=0.079 Sum_probs=45.7
Q ss_pred EEEEEEEEcCCCceEEEEEEEeec---CCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRV---PTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~---p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+.+++++..++++.+++|++|.+. ......|++|||.+|.| |++.+||+||++||||+++.
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~-E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEG-EDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCC-cCHHHHHHHHHHHHhCCcce
Confidence 455566654345556899987321 02234799999999998 99999999999999999763
No 39
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=1.9e-11 Score=94.73 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=44.0
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
+|+++++ + +++ ++|+++.+.. ...|++|||.+|.| |++++||+||++||||+++..
T Consensus 3 ~a~~iv~-~-~~~--vLl~~r~~~~--~~~~~lPGG~ve~g-Et~~~aa~RE~~EEtGl~v~~ 58 (128)
T cd04687 3 SAKAVII-K-NDK--ILLIKHHDDG--GVWYILPGGGQEPG-ETLEDAAHRECKEEIGIDVEI 58 (128)
T ss_pred EEEEEEE-E-CCE--EEEEEEEcCC--CCeEECCCcccCCC-CCHHHHHHHHHHHHHCCcccc
Confidence 4554544 3 455 8888876543 34699999999998 999999999999999998753
No 40
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.25 E-value=1.6e-11 Score=101.51 Aligned_cols=56 Identities=25% Similarity=0.169 Sum_probs=47.0
Q ss_pred EeCCEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 142 ARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 142 ~r~~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.++++|+|+++.+ ++ ++|++|++. .||+|||.+|+| |++.+||+||++||||+.+.
T Consensus 22 ~~~~~V~ii~~~~--~~--~LL~~~~~~-----~~elPgG~vE~g-Et~~eaA~REl~EETG~~~~ 77 (156)
T TIGR02705 22 PNPNHVLVIPRYK--DQ--WLLTEHKRR-----GLEFPGGKVEPG-ETSKEAAIREVMEETGAIVK 77 (156)
T ss_pred CCCCEEEEEEEEC--CE--EEEEEEcCC-----cEECCceecCCC-CCHHHHHHHHHHHHhCcEee
Confidence 3578888887754 45 889988742 499999999998 99999999999999999764
No 41
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=1.3e-11 Score=96.96 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=42.6
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
+|+++++. +|+ +||+++.+.+ .|+||||.+|+| |++.+||+||++||||+++
T Consensus 2 ~~~~ii~~--~~~--vLLv~~~~~~----~w~lPgG~ve~g-Et~~~aa~REl~EEtGl~~ 53 (131)
T cd04686 2 AVRAIILQ--GDK--ILLLYTKRYG----DYKFPGGGVEKG-EDHIEGLIRELQEETGATN 53 (131)
T ss_pred cEEEEEEE--CCE--EEEEEEcCCC----cEECccccCCCC-CCHHHHHHHHHHHHHCCcc
Confidence 45555553 365 8998887642 599999999998 9999999999999999975
No 42
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.25 E-value=8.5e-12 Score=98.21 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=43.8
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|.+. +.+.+++ +||+++.+.+. ..|.+|||+++.| |++.+||.||++||||+++.
T Consensus 2 ~v~i~-l~~~~~~--vLL~~r~~~~~--~~w~lPgG~ie~g-Et~~~aA~REl~EEtGl~~~ 57 (131)
T cd03429 2 AVIVL-VIDGGDR--ILLARQPRFPP--GMYSLLAGFVEPG-ESLEEAVRREVKEEVGIRVK 57 (131)
T ss_pred eEEEE-EEeCCCE--EEEEEecCCCC--CcCcCCcccccCC-CCHHHHHhhhhhhccCceee
Confidence 34444 3342355 89998877653 3599999999998 99999999999999999864
No 43
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=1.3e-11 Score=94.24 Aligned_cols=59 Identities=25% Similarity=0.281 Sum_probs=45.2
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCC-CCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~-~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
+|++++. +++|+ ++|+++.+.+. .++.|++|||.+++| |++.+||.||++||||+++..
T Consensus 3 ~v~~vv~-~~~~~--iLl~kr~~~~~~~~g~w~~PgG~ve~g-Es~~~aa~RE~~EE~Gl~~~~ 62 (129)
T cd04699 3 AVAALIV-KDVGR--ILILKRSKDERTAPGKWELPGGKVEEG-ETFEEALKREVYEETGLTVTP 62 (129)
T ss_pred eEEEEEE-CCCCc--EEEEEecCCCCCCCCcCcCCccCccCC-CCHHHHHHHHHHHhhCcEEEe
Confidence 4454444 42466 78887765542 345799999999998 999999999999999998653
No 44
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.24 E-value=1.9e-11 Score=92.83 Aligned_cols=53 Identities=28% Similarity=0.405 Sum_probs=41.6
Q ss_pred EEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 147 V~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
|++++++. +|+ +||+++.. ...|++|||.++++ |++++||.||++||||+++.
T Consensus 3 ~~~~v~~~-~~~--vLl~~r~~----~~~w~~PgG~ve~~-Es~~~aa~REl~EEtGl~~~ 55 (118)
T cd04690 3 AAALILVR-DGR--VLLVRKRG----TDVFYLPGGKIEAG-ETPLQALIRELSEELGLDLD 55 (118)
T ss_pred EEEEEEec-CCe--EEEEEECC----CCcEECCCCccCCC-CCHHHHHHHHHHHHHCCccC
Confidence 44555555 565 78877532 23699999999998 99999999999999999754
No 45
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.24 E-value=2.2e-11 Score=94.02 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=42.6
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
.+|+++++.. +++ +||+++ ... ..|++|||.+++| |++.+||.||++||||+++..
T Consensus 8 ~~~~~~v~~~-~~~--vLL~~r--~~~--~~w~~PgG~v~~g-Et~~~aa~REl~EE~Gi~~~~ 63 (132)
T cd04677 8 VGAGVILLNE-QGE--VLLQKR--SDT--GDWGLPGGAMELG-ESLEETARRELKEETGLEVEE 63 (132)
T ss_pred cceEEEEEeC-CCC--EEEEEe--cCC--CcEECCeeecCCC-CCHHHHHHHHHHHHhCCeeee
Confidence 4555555544 566 777554 322 3599999999998 999999999999999998653
No 46
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.22 E-value=2.4e-11 Score=92.24 Aligned_cols=55 Identities=31% Similarity=0.372 Sum_probs=42.8
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.+|+++++++ +++ ++|+++... ..|++|+|.++.| |++.+||+||++||||+++.
T Consensus 3 ~~v~~ii~~~-~~~--vLl~~r~~~----~~w~lPgG~v~~~-E~~~~aa~REl~EE~Gl~~~ 57 (129)
T cd04676 3 PGVTAVVRDD-EGR--VLLIRRSDN----GLWALPGGAVEPG-ESPADTAVREVREETGLDVE 57 (129)
T ss_pred ceEEEEEECC-CCe--EEEEEecCC----CcEECCeeccCCC-CCHHHHHHHHHHHHhCceeE
Confidence 3555555543 465 777775433 4699999999998 99999999999999999864
No 47
>PLN02325 nudix hydrolase
Probab=99.22 E-value=3.1e-11 Score=97.06 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=39.7
Q ss_pred CCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 156 ~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
+++ +||+++...+ +...|.+|||.+|.| |++.+||+||++||||+++..
T Consensus 19 ~~~--vLL~rr~~~~-~~g~W~lPGG~ve~g-Es~~~aa~REv~EEtGl~v~~ 67 (144)
T PLN02325 19 GNS--VLLGRRRSSI-GDSTFALPGGHLEFG-ESFEECAAREVKEETGLEIEK 67 (144)
T ss_pred CCE--EEEEEecCCC-CCCeEECCceeCCCC-CCHHHHHHHHHHHHHCCCCcc
Confidence 455 7776654433 345799999999998 999999999999999998654
No 48
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.22 E-value=2.5e-11 Score=94.01 Aligned_cols=56 Identities=23% Similarity=0.134 Sum_probs=44.6
Q ss_pred EEEEEEEEcC-CCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 146 AVAVLILLDS-EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 146 aV~VLvi~~~-~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
+|+|++++.. +++ ++|+++.+. ....|++|||.++.| |++.+||.||++||||+++
T Consensus 3 ~~~v~~~~~~~~~~--vLL~~r~~~--~~~~w~~PgG~ve~~-Es~~~aa~RE~~EE~Gl~~ 59 (129)
T cd04664 3 SVLVVPYRLTGEGR--VLLLRRSDK--YAGFWQSVTGGIEDG-ESPAEAARREVAEETGLDP 59 (129)
T ss_pred EEEEEEEEeCCCCE--EEEEEeCCC--CCCcccccCcccCCC-CCHHHHHHHHHHHHHCCCh
Confidence 5666666541 344 888887665 345799999999998 9999999999999999985
No 49
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.22 E-value=2.2e-11 Score=95.21 Aligned_cols=45 Identities=16% Similarity=0.047 Sum_probs=38.1
Q ss_pred EEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 160 ~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
++||+++.+. ....|.+|||.+++| |++.+||.||++||||+++.
T Consensus 15 ~vLl~~r~~~--~~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~ 59 (131)
T cd04695 15 KVLLLKRVKT--LGGFWCHVAGGVEAG-ETAWQAALRELKEETGISLP 59 (131)
T ss_pred EEEEEEecCC--CCCcEECCcccccCC-CCHHHHHHHHHHHHhCCCcc
Confidence 3888877654 234699999999998 99999999999999999865
No 50
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.21 E-value=2.3e-11 Score=93.82 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=42.4
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|+++++. +++ +||++|.+ ...|++|||.++.| |++.+||.||++||||+.+.
T Consensus 4 ~v~~~i~~--~~~--vLL~~~~~----~~~w~~PGG~ve~g-Es~~~aa~REl~EEtG~~~~ 56 (123)
T cd04672 4 DVRAAIFK--DGK--ILLVREKS----DGLWSLPGGWADVG-LSPAENVVKEVKEETGLDVK 56 (123)
T ss_pred eEEEEEEE--CCE--EEEEEEcC----CCcEeCCccccCCC-CCHHHHHHHHHHHHhCCeee
Confidence 44445443 355 88888765 23699999999998 99999999999999999864
No 51
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.20 E-value=2.8e-11 Score=93.73 Aligned_cols=57 Identities=25% Similarity=0.218 Sum_probs=42.5
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecC-CCCeEEEee-ceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELP-AGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p-~~~~~wElP-aG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|.++++++ +|+ ++|+++.... ...+.|++| ||+++.| |++ +||+||++||||+++.
T Consensus 2 ~v~v~~~~~-~g~--vLl~~R~~~~~~~pg~w~~p~GG~ve~g-E~~-~aa~REl~EEtGl~~~ 60 (127)
T cd04693 2 VVHVCIFNS-KGE--LLLQKRSPNKDGWPGMWDLSVGGHVQAG-ETS-TAAEREVKEELGLELD 60 (127)
T ss_pred eEEEEEEeC-CCe--EEEEEccCCCCCCCCcccccCCCcCCCC-CCH-HHHHHHHHHHhCCCcC
Confidence 455665554 566 7776554332 223579998 8999998 999 9999999999999864
No 52
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.20 E-value=4.1e-11 Score=97.53 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=46.8
Q ss_pred CCEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 144 GPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 144 ~~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
..+|++++++. +|+ ++|+++.+.+ ..|++|+|.+++| |++.+||.||++||||+++.
T Consensus 8 ~~~v~~~i~~~-~g~--vLL~~r~~~~---~~w~~P~G~~~~g-E~~~~aa~REl~EEtG~~~~ 64 (156)
T PRK00714 8 RPNVGIILLNR-QGQ--VFWGRRIGQG---HSWQFPQGGIDPG-ETPEQAMYRELYEEVGLRPE 64 (156)
T ss_pred CCeEEEEEEec-CCE--EEEEEEcCCC---CeEECCcccCCCC-cCHHHHHHHHHHHHhCCCcc
Confidence 35777777765 566 8888876532 4799999999998 99999999999999999763
No 53
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.20 E-value=4.2e-11 Score=92.59 Aligned_cols=59 Identities=27% Similarity=0.278 Sum_probs=45.0
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
.+|+++++.+ +|+ +||+++... .....|.+|||.++.| |++.+||.||++||||+++..
T Consensus 3 ~~v~~ii~~~-~~~--iLl~~r~~~-~~~~~w~~PGG~ve~g-Et~~~Aa~REl~EE~Gl~~~~ 61 (129)
T cd04678 3 VGVGVFVLNP-KGK--VLLGKRKGS-HGAGTWALPGGHLEFG-ESFEECAAREVLEETGLHIEN 61 (129)
T ss_pred eEEEEEEECC-CCe--EEEEeccCC-CCCCeEECCcccccCC-CCHHHHHHHHHHHHhCCcccc
Confidence 3566665544 565 777766543 2345799999999998 999999999999999998643
No 54
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.19 E-value=3.7e-11 Score=97.36 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=45.1
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.+|++++.. +++ +||+++...|.. +.|.||||++|.| |++++||.||++||||+++.
T Consensus 11 ~~v~~~i~~--~~~--iLLvrR~~~p~~-g~WalPGG~ve~G-Et~eeaa~REl~EETgL~~~ 67 (145)
T COG1051 11 VAVGALIVR--NGR--ILLVRRANEPGA-GYWALPGGFVEIG-ETLEEAARRELKEETGLRVR 67 (145)
T ss_pred eeeeEEEEe--CCE--EEEEEecCCCCC-CcEeCCCccCCCC-CCHHHHHHHHHHHHhCCccc
Confidence 345555443 355 899988666654 4699999999998 99999999999999999864
No 55
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.17 E-value=6.4e-11 Score=92.09 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=40.8
Q ss_pred CCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 156 ~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
+|+ +||+++.+.+.....|+||+|.+|+| |++.+||.||++||||+++..
T Consensus 14 ~~~--vLL~~R~~~~~~~g~w~~PgG~ve~g-E~~~~a~~RE~~EE~Gl~~~~ 63 (135)
T PRK10546 14 DGK--ILLAQRPAHSDQAGLWEFAGGKVEPG-ESQPQALIRELREELGIEATV 63 (135)
T ss_pred CCE--EEEEEccCCCCCCCcEECCcccCCCC-CCHHHHHHHHHHHHHCCcccc
Confidence 565 77776655444456899999999998 999999999999999998653
No 56
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.17 E-value=9.9e-11 Score=89.23 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=43.8
Q ss_pred EEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 147 V~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
++++++.+.+|+ ++|+++...+...+.|+||||.+++| |++.+||.||++||||+++.
T Consensus 6 ~~~~ii~~~~~~--vll~rR~~~~~~~g~w~~PgG~~~~g-E~~~~a~~Re~~EE~gl~~~ 63 (129)
T PRK10776 6 IAVGIIRNPNNE--IFITRRAADAHMAGKWEFPGGKIEAG-ETPEQALIRELQEEVGITVQ 63 (129)
T ss_pred EEEEEEECCCCE--EEEEEecCCCCCCCeEECCceecCCC-CCHHHHHHHHHHHHHCCcee
Confidence 333444443455 77777655554456899999999998 99999999999999999853
No 57
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.16 E-value=7.9e-11 Score=95.15 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=46.9
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecC-CCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p-~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
+|+|++++. +++ +||+++.+.+ .....|++|||.++++ |++.+||+||++||||+++..
T Consensus 3 ~v~viv~~~-~~~--vLl~rr~~~~~~~~g~w~~PgG~v~~~-E~~~~aa~RE~~EE~gi~~~~ 62 (143)
T cd04694 3 GVAVLLQSS-DQK--LLLTRRASSLRIFPNVWVPPGGHVELG-ENLLEAGLRELNEETGLTLDP 62 (143)
T ss_pred EEEEEEEcC-CCE--EEEEEECCCCCCCCCeEECcccccCCC-CCHHHHHHHHHHHHHCCCccc
Confidence 456665554 565 8998887653 2345899999999998 999999999999999998653
No 58
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.15 E-value=7.8e-11 Score=90.79 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=40.7
Q ss_pred EEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 147 V~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
|.++++ . +++ ++|+++.. ...|++|||.+|+| |++.+||.||++||||+++.
T Consensus 4 ~~~vi~-~-~~~--vLlv~~~~----~~~~~lPGG~ve~g-Et~~~aa~REl~EEtGl~~~ 55 (125)
T cd04689 4 ARAIVR-A-GNK--VLLARVIG----QPHYFLPGGHVEPG-ETAENALRRELQEELGVAVS 55 (125)
T ss_pred EEEEEE-e-CCE--EEEEEecC----CCCEECCCCcCCCC-CCHHHHHHHHHHHHhCceee
Confidence 444444 3 465 88887632 23699999999998 99999999999999999764
No 59
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.15 E-value=8.2e-11 Score=93.54 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=43.7
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCC---CCeEEEe-eceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPT---GRVILEL-PAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~---~~~~wEl-PaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.+|.|++++..+|+.++++.+ |.+. ..+.|++ |||.+|+| |++.+||+||++||||+++.
T Consensus 3 ~~v~~~v~~~~~~~~~vLl~~--R~~~~~~~pg~W~~~~gG~ve~g-Et~~~aa~REl~EEtGl~~~ 66 (144)
T cd04692 3 RTFHCWIITKDEGKGYVLLQK--RSANKKTYPGLWDISSAGHILAG-ETPLEDGIRELEEELGLDVS 66 (144)
T ss_pred eEEEEEEEEccCCCCEEEEEe--cCCCCCCCCCccccccCcccCCC-CCHHHHHHHHHHHHhCCCCC
Confidence 367777777644333355544 4443 2347999 59999998 99999999999999999753
No 60
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.15 E-value=1.1e-10 Score=90.07 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=36.0
Q ss_pred EEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 161 AILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 161 vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
++|+++.+ ...|++|||.+|.| |++.+||.||++||||+++..
T Consensus 14 vLl~~~~~----~~~w~lPgG~ve~g-Es~~~aa~RE~~EEtGl~~~~ 56 (126)
T cd04688 14 LLVQKNPD----ETFYRPPGGGIEFG-ESSEEALIREFKEELGLKIEI 56 (126)
T ss_pred EEEEEeCC----CCeEECCCccccCC-CCHHHHHHHHHHHHhCCceec
Confidence 77765433 24699999999998 999999999999999998643
No 61
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.14 E-value=7.2e-11 Score=91.91 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=41.9
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCC---CeEEEe-eceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTG---RVILEL-PAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~---~~~wEl-PaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
++.|++++. +|+ ++|++ |.... .+.|++ |||.+++| |++.+||+||++||||+++.
T Consensus 2 ~~~v~i~~~-~~~--iLl~~--R~~~~~~~~g~w~~~~GG~ve~g-E~~~~aa~REl~EEtGl~~~ 61 (126)
T cd04697 2 ATYIFVFNS-EGK--LCVHK--RTLTKDWCPGYWDIAFGGVVQAG-ESYLQNAQRELEEELGIDGV 61 (126)
T ss_pred eEEEEEEcC-CCe--EEEEE--CCCCCCCCCCcccCcCCcccCCC-CCHHHHHHHHHHHHHCCCcc
Confidence 455666654 565 66644 44322 346999 68999998 99999999999999999864
No 62
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.14 E-value=1.7e-10 Score=90.94 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=37.9
Q ss_pred EEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 161 AILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 161 vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
++|++|.+.+ +...|+||+|++|.| |++.+||.||+.||||+++.
T Consensus 17 ~lL~~r~~~~-~~~~w~lPgG~ve~~-E~~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 17 LLVIRRGIEP-GRGKLALPGGFIELG-ETWQDAVARELLEETGVAVD 61 (118)
T ss_pred EEEEEeecCC-CCCeEECCceecCCC-CCHHHHHHHHHHHHHCCccc
Confidence 5666665544 345799999999998 99999999999999999865
No 63
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=1.8e-10 Score=88.24 Aligned_cols=55 Identities=22% Similarity=0.205 Sum_probs=43.3
Q ss_pred EEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 150 LILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 150 Lvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+++.+.+|+ +++.++.+.+...+.|+||+|.++.| |++.++|.||+.||||+++.
T Consensus 9 ~ii~~~~~~--vLl~~R~~~~~~~g~w~~Pgg~ve~g-e~~~~~~~RE~~EE~g~~~~ 63 (128)
T TIGR00586 9 GIIRNENGE--IIITRRADGHMFAKLLEFPGGKEEGG-ETPEQAVVRELEEEIGIPQH 63 (128)
T ss_pred EEEECCCCE--EEEEEEeCCCCCCCeEECCCcccCCC-CCHHHHHHHHHHHHHCCcce
Confidence 333443455 77777666665566899999999998 99999999999999999864
No 64
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.13 E-value=6.4e-11 Score=104.48 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=45.7
Q ss_pred CCEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 144 GPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 144 ~~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.++|.|+ +.+ +++ +||++|.+.+. ..|.+|||.+|+| |++++||+||++||||+++.
T Consensus 132 ~paViv~-V~~-~~~--iLL~rr~~~~~--g~wslPgG~vE~G-Es~eeAa~REv~EEtGl~v~ 188 (256)
T PRK00241 132 APCIIVA-VRR-GDE--ILLARHPRHRN--GVYTVLAGFVEVG-ETLEQCVAREVMEESGIKVK 188 (256)
T ss_pred CCEEEEE-EEe-CCE--EEEEEccCCCC--CcEeCcccCCCCC-CCHHHHhhhhhhhccCceee
Confidence 3455443 333 455 99999988873 3699999999998 99999999999999999864
No 65
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.13 E-value=1.8e-10 Score=86.45 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=44.5
Q ss_pred EEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 148 AVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 148 ~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+++++.+++++ ++|+++.+.+...+.|++|+|.++.+ |++.++|.||++||||+++.
T Consensus 4 ~~~~i~~~~~~--~Ll~~r~~~~~~~g~w~~p~G~~~~~-e~~~~~a~Re~~EE~g~~~~ 60 (124)
T cd03425 4 VAAIIIDDDGR--ILIAQRPAGKHLGGLWEFPGGKVEPG-ETPEQALVRELREELGIEVE 60 (124)
T ss_pred EEEEEECCCCE--EEEEEeCCCCCCCCeEeCCCcccCCC-CCHHHHHHHHHHHhhCcEEe
Confidence 33334443455 78887766664556899999999998 99999999999999999864
No 66
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.12 E-value=1.5e-10 Score=90.95 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=41.4
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
+|.|+++. +++ +||+++.+ ..|++|||++|.| |++.+||+||+.||||+++
T Consensus 2 ~v~vi~~~--~~~--vLl~~~~~-----~~w~lPgG~ve~g-E~~~~aa~REl~EE~G~~~ 52 (118)
T cd04665 2 SVLVICFY--DDG--LLLVRHKD-----RGWEFPGGHVEPG-ETIEEAARREVWEETGAEL 52 (118)
T ss_pred EEEEEEEE--CCE--EEEEEeCC-----CEEECCccccCCC-CCHHHHHHHHHHHHHCCcc
Confidence 46556554 355 88888741 3699999999998 9999999999999999975
No 67
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.12 E-value=1e-10 Score=88.79 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=37.0
Q ss_pred CCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 156 ~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
+++ ++|+++.+ ..|++|||.+++| |++.+||.||++||||+++
T Consensus 10 ~~~--vLlv~r~~-----~~w~~PgG~ve~g-E~~~~aa~REl~EEtGl~~ 52 (112)
T cd04667 10 GGR--VLLVRKSG-----SRWALPGGKIEPG-ETPLQAARRELQEETGLQG 52 (112)
T ss_pred CCE--EEEEEcCC-----CcEeCCCCcCCCC-CCHHHHHHHHHHHHhCCcc
Confidence 455 88887643 3699999999998 9999999999999999975
No 68
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.07 E-value=3.5e-10 Score=83.67 Aligned_cols=56 Identities=29% Similarity=0.357 Sum_probs=43.9
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
++++++++. +++ ++|+++.+. ....|++|+|+++.+ |++.++|.||++||+|+.+.
T Consensus 2 ~~~~i~~~~-~~~--ill~kr~~~--~~~~~~~p~G~~~~~-e~~~~~a~RE~~EE~Gl~~~ 57 (123)
T cd02883 2 AVGAVILDE-DGR--VLLVRRADS--PGGLWELPGGGVEPG-ETLEEAAIREVREETGLDVD 57 (123)
T ss_pred ceEEEEECC-CCC--EEEEEEcCC--CCCeEeCCcccccCC-CCHHHHHHHHHHHhhCccce
Confidence 455555543 455 788777665 345799999999998 99999999999999999763
No 69
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.07 E-value=4.2e-10 Score=89.61 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=45.0
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecC-CCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p-~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
++.|++++. +|+ ++|+++.+.. .....|++|||.++.| |++.+||.||++||||+++
T Consensus 2 ~~~~~i~~~-~g~--vLl~r~~~~~~~~~~~w~~PgG~ve~g-E~~~~a~~Re~~EE~G~~~ 59 (133)
T cd04685 2 AARVVLLDP-DDR--VLLLRGDDPDSPGPDWWFTPGGGVEPG-ESPEQAARRELREETGITV 59 (133)
T ss_pred eEEEEEEcC-CCe--EEEEEEeCCCCCCCCEEECCcCCCCCC-CCHHHHHHHHHHHHHCCcc
Confidence 466676655 566 7887755431 1344799999999998 9999999999999999986
No 70
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.03 E-value=4.4e-10 Score=91.82 Aligned_cols=59 Identities=14% Similarity=0.002 Sum_probs=43.3
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecC-CCCeEEEee-ceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVP-TGRVILELP-AGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p-~~~~~wElP-aG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.+|+|++++. +++ ++|+++.... ..+..|++| ||++|+| |++++||+||++||||+++.
T Consensus 31 ~~v~v~i~~~-~~~--iLl~kR~~~~~~~Pg~w~~~~gG~ie~G-Et~~eaa~REl~EEtGl~~~ 91 (165)
T cd02885 31 RAFSVFLFNS-KGR--LLLQRRALSKYTFPGLWTNTCCSHPLPG-EGVKDAAQRRLREELGITGD 91 (165)
T ss_pred eEEEEEEEcC-CCc--EEEEeccCCCccCCCcccccccCCCCCC-CCHHHHHHHHHHHHhCCCcc
Confidence 3566665544 566 7776643221 123479996 8999998 99999999999999999865
No 71
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.01 E-value=5.9e-10 Score=92.91 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=40.0
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCCCC---eEE-EeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPTGR---VIL-ELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~---~~w-ElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
.+++++++ +.+|+ ++|.+ |.+.+. ..| .+|||.+++| |++.+||+|||+||||+.+
T Consensus 38 ~~~~v~v~-~~~g~--iLL~~--R~~~~~~~pg~~~~~pGG~ve~G-Es~~eAA~REL~EEtGl~~ 97 (180)
T PRK15393 38 RATYIVVH-DGMGK--ILVQR--RTETKDFLPGMLDATAGGVVQAG-EQLLESARREAEEELGIAG 97 (180)
T ss_pred EEEEEEEE-CCCCe--EEEEE--eCCCCCCCCCcccccCCCcCCCC-CCHHHHHHHHHHHHHCCCC
Confidence 45555555 43566 66644 443322 234 6899999999 9999999999999999974
No 72
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.00 E-value=4.6e-10 Score=101.78 Aligned_cols=62 Identities=26% Similarity=0.385 Sum_probs=49.8
Q ss_pred eCCEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 143 r~~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
|.+-|.|.++++.+++ +.+|.||.|++.| +|.++||++|+| |++++||.||+.||||+++..
T Consensus 185 r~dPvVIm~li~~d~~-~~LL~R~~r~~~g--l~t~lAGFlEpG-ES~eeav~REtwEEtGi~V~~ 246 (345)
T KOG3084|consen 185 RTDPVVIMLLIDHDGK-HALLGRQKRYPPG--LWTCLAGFLEPG-ESIEEAVRRETWEETGIEVEV 246 (345)
T ss_pred CCCCeEEEEEEcCCCC-EeeeecccCCCCc--hhhhhhccCCcc-ccHHHHHHHHHHHHhCceeee
Confidence 3333444444454675 5999999999875 799999999999 999999999999999998753
No 73
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.00 E-value=6.5e-10 Score=87.72 Aligned_cols=44 Identities=20% Similarity=0.201 Sum_probs=36.0
Q ss_pred EEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 161 AILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 161 vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+||+++. .+. ...|+||+|.+|+| |++.+||.||++||||+.+.
T Consensus 15 ~Llvk~~-~~~-~g~W~fPgG~ve~g-Et~~eaa~REl~EEtGl~v~ 58 (132)
T cd04661 15 VLLVQQK-VGS-QNHWILPQGKREEG-ETLRQTAERTLKELCGNNLK 58 (132)
T ss_pred EEEEEee-cCC-CCeeECCcccccCC-CCHHHHHHHHHHHhhCCCce
Confidence 5666553 332 34799999999998 99999999999999999754
No 74
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.99 E-value=6.7e-10 Score=101.28 Aligned_cols=48 Identities=25% Similarity=0.470 Sum_probs=40.5
Q ss_pred CCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 156 ~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|+ +||+++...| +...|.+|||.+|+| |++++||+||++||||+++.
T Consensus 213 ~g~--VLLvrR~~~p-~~g~W~lPGG~ve~g-Et~~~Aa~REl~EETGl~v~ 260 (340)
T PRK05379 213 SGH--VLLVRRRAEP-GKGLWALPGGFLEQD-ETLLDACLRELREETGLKLP 260 (340)
T ss_pred CCE--EEEEEecCCC-CCCeEECCcccCCCC-CCHHHHHHHHHHHHHCCccc
Confidence 565 8888865544 456899999999998 99999999999999999863
No 75
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=98.95 E-value=1.3e-09 Score=90.77 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=42.5
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecC-CCCeEEEee-ceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVP-TGRVILELP-AGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p-~~~~~wElP-aG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.+|+|++++. +|+ ++|+++.... ...+.|.+| ||.+++| |++++||+||++||||+++.
T Consensus 35 ~av~v~i~~~-~g~--vLL~rR~~~~~~~PG~w~~~~gG~ve~G-Et~~~aa~REl~EEtGl~~~ 95 (184)
T PRK03759 35 LAFSCYLFDA-DGR--LLVTRRALSKKTWPGVWTNSCCGHPQPG-ESLEDAVIRRCREELGVEIT 95 (184)
T ss_pred eEEEEEEEcC-CCe--EEEEEccCCCCCCCCcccccccCCCCCC-CCHHHHHHHHHHHHhCCCcc
Confidence 3566666644 566 7887643211 112357776 8999998 99999999999999999864
No 76
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.94 E-value=1.9e-09 Score=80.53 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=34.6
Q ss_pred EEEEEeecCCCCeEEEeeceeeCCCCCCHHH-HHHHHHHHHhCCcee
Q 028360 162 ILTEQVRVPTGRVILELPAGMLDDDKGDFVG-TAVREVSFILLLDFL 207 (210)
Q Consensus 162 lLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~-aA~REl~EETGi~v~ 207 (210)
+|+.+.+.+. ..|++|||.+|.+ |++.+ ||+||+.||||+++.
T Consensus 26 vl~~~~~~~~--~~~~~PgG~ve~~-e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 26 VLLAQRRDDG--GLWELPGGKVEPG-EELPEEAAARELEEETGLRVK 69 (161)
T ss_pred EeEEEccccC--CceecCCcccCCC-CchHHHHHHHHHHHHhCCeee
Confidence 5555545543 4699999999998 77788 999999999999875
No 77
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.89 E-value=6e-09 Score=83.36 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=32.1
Q ss_pred eecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 167 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 167 ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
+|.+.+ .|+||||.+++| |++.+||+||++||||+++
T Consensus 19 ~r~~~~--~~~lPgG~ve~~-E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 19 FEHPLA--GFQIVKGTVEPG-ETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEcCCC--cEECCCccCCCC-CCHHHHHHHHHHHHHCCee
Confidence 344543 399999999998 9999999999999999986
No 78
>PLN02709 nudix hydrolase
Probab=98.86 E-value=5.5e-09 Score=90.95 Aligned_cols=64 Identities=28% Similarity=0.319 Sum_probs=47.7
Q ss_pred eCCEEEEEEEEcC---CCceEEEEEEEeecC-CCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 143 RGPAVAVLILLDS---EGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 143 r~~aV~VLvi~~~---~g~~~vlLvrQ~R~p-~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
+.-||.|+++... +++.+++|+++.+.. ...+.|.||||++|++|+++.+||.||++||+|+..
T Consensus 32 r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~ 99 (222)
T PLN02709 32 KSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDP 99 (222)
T ss_pred CccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCc
Confidence 3456665555421 245679999887652 234579999999999767899999999999999975
No 79
>PRK08999 hypothetical protein; Provisional
Probab=98.79 E-value=1.4e-08 Score=90.30 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=44.2
Q ss_pred EEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 148 AVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 148 ~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+++++.+.+|+ ++|+++.+.+...+.|+||+|.++.| |++.+||.||++||||+++.
T Consensus 8 ~~~vi~~~~~~--vLL~kR~~~~~~~g~w~~PgG~ve~g-E~~~~aa~RE~~EE~Gl~~~ 64 (312)
T PRK08999 8 AAGVIRDADGR--ILLARRPEGKHQGGLWEFPGGKVEPG-ETVEQALARELQEELGIEVT 64 (312)
T ss_pred EEEEEECCCCe--EEEEEecCCCCCCCeEECCccCCCCC-CCHHHHHHHHHHHHhCCcee
Confidence 33344443465 78877765555556899999999998 99999999999999999864
No 80
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=98.76 E-value=1.3e-08 Score=83.00 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=39.8
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecC-CCCeEEEee-ceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELP-AGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p-~~~~~wElP-aG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|++++++. +|+ ++|.++.... ...+.|++| ||.++.| | .+||.||++||||+++.
T Consensus 29 ~v~v~v~~~-~g~--vLl~kR~~~k~~~PG~W~~~~gG~v~~G-E--~eaa~REl~EE~Gl~~~ 86 (158)
T TIGR02150 29 AFSVFLFNE-EGQ--LLLQRRALSKITWPGVWTNSCCSHPLPG-E--LEAAIRRLREELGIPAD 86 (158)
T ss_pred EEEEEEEcC-CCe--EEEEeccCCCcCCCCCccccccCCCCcc-c--HHHHHHHHHHHHCCCcc
Confidence 566665544 566 6776533211 223579997 7999998 8 49999999999999864
No 81
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=98.70 E-value=3.7e-08 Score=81.39 Aligned_cols=34 Identities=26% Similarity=0.032 Sum_probs=30.7
Q ss_pred CeEE-EeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 173 RVIL-ELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 173 ~~~w-ElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
++.| ++|||++++| |++.+||+||++||||+++.
T Consensus 63 Pg~wd~~~~G~v~~g-E~~~~aA~REl~EE~Gl~~~ 97 (180)
T cd03676 63 PGMLDNLVAGGLGHG-EGPEETLVKECDEEAGLPED 97 (180)
T ss_pred CCceeeecccCCCCC-CCHHHHHHHHHHHHhCCCHH
Confidence 4578 6999999998 99999999999999999754
No 82
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.62 E-value=6.6e-08 Score=82.06 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=35.9
Q ss_pred CCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCc
Q 028360 156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLD 205 (210)
Q Consensus 156 ~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~ 205 (210)
++...++++++.. ...|.||||++|++ |++.+||.|||+||||+.
T Consensus 46 ~~~l~vLl~~r~~----~g~walPGG~v~~~-E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 46 KPILQFVAIKRPD----SGEWAIPGGMVDPG-EKISATLKREFGEEALNS 90 (186)
T ss_pred CCeeEEEEEEeCC----CCcCcCCeeeccCC-CCHHHHHHHHHHHHHccc
Confidence 3445577776532 24699999999998 999999999999999764
No 83
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.50 E-value=1.3e-07 Score=84.71 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=46.3
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCceec
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 208 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~~ 208 (210)
++|.|+++ + .++ ++|.++.|+. ..++.+-||+||+| |++++|..||++||+|++|..
T Consensus 145 P~vIv~v~-~-~~~--ilLa~~~~h~--~g~yS~LAGFVE~G-ETlE~AV~REv~EE~Gi~V~~ 201 (279)
T COG2816 145 PCVIVAVI-R-GDE--ILLARHPRHF--PGMYSLLAGFVEPG-ETLEQAVAREVFEEVGIKVKN 201 (279)
T ss_pred CeEEEEEe-c-CCc--eeecCCCCCC--CcceeeeeecccCC-ccHHHHHHHHHHHhhCeEEee
Confidence 45555544 3 344 8898988887 34688999999999 999999999999999999864
No 84
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.23 E-value=3.1e-06 Score=74.41 Aligned_cols=63 Identities=25% Similarity=0.231 Sum_probs=46.8
Q ss_pred CCEEEEEEEEcCCCceEEEEEEEeecCC-CCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 144 GPAVAVLILLDSEGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 144 ~~aV~VLvi~~~~g~~~vlLvrQ~R~p~-~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
.-+|.|.++...+++..++|+++.|.-- ..+...||||+.|+.|++-..+|.||.+||.|++.
T Consensus 43 ~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~ 106 (246)
T KOG3069|consen 43 KAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDP 106 (246)
T ss_pred CccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCH
Confidence 3456555544435666788888765531 23467899999999888999999999999999974
No 85
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.19 E-value=3.7e-06 Score=68.91 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=37.3
Q ss_pred eEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 159 ~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
..|||+.-.+++- .|-+|.|.+|+| |+..+||.||..||.|+.=
T Consensus 24 ieVLlvsSs~~~~---~wi~PKGGwE~d-E~~~eAA~REt~EEAGv~G 67 (145)
T KOG2839|consen 24 IEVLLVSSSKKPH---RWIVPKGGWEPD-ESVEEAALRETWEEAGVKG 67 (145)
T ss_pred eEEEEEecCCCCC---CccCCCCCCCCC-CCHHHHHHHHHHHHhCcee
Confidence 5688887666553 488999999998 9999999999999999963
No 86
>PLN02791 Nudix hydrolase homolog
Probab=97.97 E-value=1.3e-05 Score=80.67 Aligned_cols=59 Identities=22% Similarity=0.173 Sum_probs=42.4
Q ss_pred EEEEEEEEcCCCceEEEEEEEeecC-CCCeEEEe-eceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILEL-PAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~R~p-~~~~~wEl-PaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+|.|.+++.++++ ++|.++-... ..++.|.+ |||+++.| |+..+||.|||+||+|+.+.
T Consensus 34 AvhVwIfn~~~ge--lLLQkRS~~K~~~PG~WDiS~gGHv~aG-Es~~eAA~REL~EELGI~l~ 94 (770)
T PLN02791 34 AVHVWIYSESTQE--LLLQRRADCKDSWPGQWDISSAGHISAG-DTSLLSAQRELEEELGIILP 94 (770)
T ss_pred EEEEEEEECCCCe--EEEEEecCCCCCCCCcccCcCCCCCCCC-CCHHHHHHHHHHHHhCCCCC
Confidence 5666766643455 5555432211 22457988 79999998 99999999999999999753
No 87
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=97.86 E-value=1.4e-05 Score=72.70 Aligned_cols=62 Identities=23% Similarity=0.170 Sum_probs=50.7
Q ss_pred eCCEEEEEEEEcCCCceEEEEEEEeecCC-------------------------CCeEEEeeceeeCCCCCCHHHHHHHH
Q 028360 143 RGPAVAVLILLDSEGETYAILTEQVRVPT-------------------------GRVILELPAGMLDDDKGDFVGTAVRE 197 (210)
Q Consensus 143 r~~aV~VLvi~~~~g~~~vlLvrQ~R~p~-------------------------~~~~wElPaG~vd~g~Es~~~aA~RE 197 (210)
+-.+|.|+.+..+ -+ +++|+||+|.++ -++.+||.||.+|.+ -++.+.|..|
T Consensus 25 ~~~~v~ill~~r~-~e-q~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke-~s~~eia~ee 101 (405)
T KOG4432|consen 25 KMSSVSILLFHRD-LE-QFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKE-LSPREIASEE 101 (405)
T ss_pred hccceEEEEEccc-hh-hhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccc-cCHHHHhHHH
Confidence 3567888877653 33 499999999864 135799999999997 8999999999
Q ss_pred HHHHhCCcee
Q 028360 198 VSFILLLDFL 207 (210)
Q Consensus 198 l~EETGi~v~ 207 (210)
+.||+||++.
T Consensus 102 v~eecgy~v~ 111 (405)
T KOG4432|consen 102 VAEECGYRVD 111 (405)
T ss_pred HHHHhCCcCC
Confidence 9999999875
No 88
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=97.85 E-value=3e-05 Score=68.56 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=35.3
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCCC---CeEEEee-----ceeeCCC---------CCC---HHHHHHHHHHHHhCC
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPTG---RVILELP-----AGMLDDD---------KGD---FVGTAVREVSFILLL 204 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~~---~~~wElP-----aG~vd~g---------~Es---~~~aA~REl~EETGi 204 (210)
.++.|++++. +|+ ++|.+ |...+ +..|+.. ++..|.+ +|+ ..+||.|||+||||+
T Consensus 57 ra~~v~i~n~-~g~--lLLQk--Rs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI 131 (247)
T PLN02552 57 RAFSVFLFNS-KYE--LLLQQ--RAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGI 131 (247)
T ss_pred EEEEEEEEcC-CCe--EEEEE--ecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCC
Confidence 3677776655 676 55544 44433 3478555 3333332 011 678999999999999
Q ss_pred ce
Q 028360 205 DF 206 (210)
Q Consensus 205 ~v 206 (210)
++
T Consensus 132 ~~ 133 (247)
T PLN02552 132 PA 133 (247)
T ss_pred Cc
Confidence 84
No 89
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=97.73 E-value=6.8e-05 Score=60.98 Aligned_cols=61 Identities=20% Similarity=0.070 Sum_probs=44.3
Q ss_pred CEEEEEEEEcCCCceEEEEEEEeecCCC----CeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 145 PAVAVLILLDSEGETYAILTEQVRVPTG----RVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 145 ~aV~VLvi~~~~g~~~vlLvrQ~R~p~~----~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
.+.+||++....|...|+| ..+-.|.. ...|.+|.|..+.| |+++.||.||..||+||.++
T Consensus 4 ~SAGvLlYR~~aG~v~VLL-vHPGGPFWa~kD~GAWSIPKGey~~g-Edp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 4 LSAGVLLYRARAGVVDVLL-VHPGGPFWAGKDDGAWSIPKGEYTGG-EDPWLAARREFSEEIGICVD 68 (161)
T ss_pred ccceeEEEEecCCCEEEEE-ecCCCCccccCCCCcccccccccCCC-cCHHHHHHHHhhhhhceeec
Confidence 3566777765555533333 33444431 24799999999998 99999999999999999874
No 90
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=97.48 E-value=0.00039 Score=63.52 Aligned_cols=73 Identities=26% Similarity=0.157 Sum_probs=55.9
Q ss_pred CCCcEE-eEEEEEeCCEEEEEEEEcCCCceEEEEEEEeecCCC---------------------------CeEEEeecee
Q 028360 131 ETGQKV-PGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTG---------------------------RVILELPAGM 182 (210)
Q Consensus 131 ~~G~~~-~~~v~~r~~aV~VLvi~~~~g~~~vlLvrQ~R~p~~---------------------------~~~wElPaG~ 182 (210)
.||-+- +...- .+++|+++.++-...+ +||++|+|.++. +..+||.||.
T Consensus 216 qNGi~knWDl~k-~hdSvt~iL~n~srk~--LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~ 292 (405)
T KOG4432|consen 216 QNGITKNWDLAK-CHDSVTCILVNMSRKE--LVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGR 292 (405)
T ss_pred ecCcccccchhh-CCCceEEEEEeccchh--eehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeeccc
Confidence 456544 44443 4688888877764444 999999998751 2478999999
Q ss_pred eCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 183 LDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 183 vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
||.. -+..+.|+||.-||+||++.
T Consensus 293 Vd~p-~s~~e~a~~e~veecGYdlp 316 (405)
T KOG4432|consen 293 VDDP-FSDPEKAARESVEECGYDLP 316 (405)
T ss_pred CCCC-cccHHHHHHHHHHHhCCCCC
Confidence 9987 78899999999999999864
No 91
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=97.26 E-value=0.00091 Score=49.84 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=34.6
Q ss_pred CCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhC
Q 028360 156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILL 203 (210)
Q Consensus 156 ~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETG 203 (210)
+|+ ++|.++...+.-+++||||+|.++.+ ++.+++..||+.||.+
T Consensus 13 ~~~--~ll~kR~~~gl~~glwefP~~~~~~~-~~~~~~~~~~~~~~~~ 57 (118)
T cd03431 13 DGR--VLLEKRPEKGLLAGLWEFPSVEWEEE-ADGEEALLSALKKALR 57 (118)
T ss_pred CCe--EEEEECCCCCCCCcceeCCCccccCC-cCHHHHHHHHHHHHhC
Confidence 455 66666544444466999999999887 8888898899988875
No 92
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=96.28 E-value=0.0054 Score=54.06 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=26.0
Q ss_pred eEEEeeceeeCCCCCCHHHHHHHHHHHHh
Q 028360 174 VILELPAGMLDDDKGDFVGTAVREVSFIL 202 (210)
Q Consensus 174 ~~wElPaG~vd~g~Es~~~aA~REl~EET 202 (210)
..|.|||||+|+| |..-.+.+||+.||.
T Consensus 150 ~~WAiPGGmvdpG-E~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 150 GEWAIPGGMVDPG-EKVSATLKREFGEEA 177 (275)
T ss_pred CcccCCCCcCCch-hhhhHHHHHHHHHHH
Confidence 3699999999999 999999999999995
No 93
>PLN02839 nudix hydrolase
Probab=95.00 E-value=0.066 Score=50.23 Aligned_cols=57 Identities=19% Similarity=0.074 Sum_probs=37.8
Q ss_pred EEEEEEEcCCCceEEEEEEEeecCCC---CeEE-EeeceeeCCCCCCHHHHHHHHHHHHhCCce
Q 028360 147 VAVLILLDSEGETYAILTEQVRVPTG---RVIL-ELPAGMLDDDKGDFVGTAVREVSFILLLDF 206 (210)
Q Consensus 147 V~VLvi~~~~g~~~vlLvrQ~R~p~~---~~~w-ElPaG~vd~g~Es~~~aA~REl~EETGi~v 206 (210)
|-+-.+...+++. -|=.+.|...+ .+.| -+.||.+..| |++.++++||..||.|+..
T Consensus 206 VHlNGyv~~~g~~--~lWV~RRS~tK~t~PGmLDn~VAGGi~aG-esp~etliREa~EEAgLp~ 266 (372)
T PLN02839 206 VHMNGYVERDGQK--FLWIGKRSLSKSTYPGMLDHLVAGGLPHG-ISCGENLVKECEEEAGISK 266 (372)
T ss_pred EEEEEEEecCCCe--EEEeeccCCCCCCCCChhhhccccCccCC-CCHHHHHHHHHHHHcCCCH
Confidence 3334444334542 23334455443 2344 5679999998 9999999999999999964
No 94
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=92.95 E-value=0.12 Score=39.20 Aligned_cols=50 Identities=18% Similarity=0.052 Sum_probs=27.1
Q ss_pred cCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 154 DSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 154 ~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
+++|+ ++|.+++-.+.-.++||||.--++. ++..+.+.+.+.+..|+.+.
T Consensus 6 ~~~~~--~Ll~kRp~~gll~GLwefP~~e~~~--~~~~~~l~~~~~~~~~~~~~ 55 (114)
T PF14815_consen 6 RSQGR--VLLEKRPEKGLLAGLWEFPLIESDE--EDDEEELEEWLEEQLGLSIR 55 (114)
T ss_dssp ETTSE--EEEEE--SSSTTTT-EE--EEE-SS--S-CHHHHHHHTCCSSS-EEE
T ss_pred EeCCE--EEEEECCCCChhhcCcccCEeCccC--CCCHHHHHHHHHHHcCCChh
Confidence 43666 7777666656656799999877764 33355556666677777653
No 95
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=92.69 E-value=0.028 Score=51.91 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=35.8
Q ss_pred EEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 161 AILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 161 vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
++|+.+.... .|.+|-|.+..+ |+-.+||.||+.||||.+..
T Consensus 97 ~llv~g~qa~----sw~fprgK~~kd-esd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 97 CLLVKGWQAS----SWSFPRGKISKD-ESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred hheeeceecc----cccccCcccccc-chhhhcchhcccchhhcCHH
Confidence 7888776542 499999999997 99999999999999998753
No 96
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=90.92 E-value=0.79 Score=39.39 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=31.9
Q ss_pred EEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCc
Q 028360 149 VLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLD 205 (210)
Q Consensus 149 VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~ 205 (210)
|+++.. .+-.+|||.+. . ...+.||||.+.+| |+..++.+|.|.|-.|..
T Consensus 49 Vllvh~-h~~PHvLLLq~-~----~~~fkLPGg~l~~g-E~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 49 VLLVHE-HGHPHVLLLQI-G----NTFFKLPGGRLRPG-EDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp EEEEEE-TTEEEEEEEEE-T----TTEEE-SEEE--TT---HHHHHHHHHHHHHB-S
T ss_pred EEEEec-CCCcEEEEEec-c----CccccCCccEeCCC-CChhHHHHHHHHHHcCCC
Confidence 444433 45567777752 2 12799999999999 999999999999987753
No 97
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=84.94 E-value=3.1 Score=35.74 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=36.0
Q ss_pred EEEEEEcCCCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhC
Q 028360 148 AVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILL 203 (210)
Q Consensus 148 ~VLvi~~~~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETG 203 (210)
+|+++.+ .+-.+++| -|.+ ..++.+|||.+++| |+-.+..+|-+-|-.|
T Consensus 74 gvlivhe-H~lPHvLL-LQig----~tf~KLPGG~L~pG-E~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 74 GVLIVHE-HNLPHVLL-LQIG----NTFFKLPGGRLRPG-EDEADGLKRLLTESLG 122 (221)
T ss_pred eeEEEee-cCCCeEEE-EeeC----CEEEecCCCccCCC-cchhHHHHHHHHHHhc
Confidence 4555544 33344555 4543 45799999999999 9999999999999988
No 98
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=81.22 E-value=2 Score=36.82 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=34.8
Q ss_pred EEEEEEEEcCCCceEEEEEEEe-ecCCCCeEEE-eeceeeCCCCCCHHHHHHHHHHHHhCCcee
Q 028360 146 AVAVLILLDSEGETYAILTEQV-RVPTGRVILE-LPAGMLDDDKGDFVGTAVREVSFILLLDFL 207 (210)
Q Consensus 146 aV~VLvi~~~~g~~~vlLvrQ~-R~p~~~~~wE-lPaG~vd~g~Es~~~aA~REl~EETGi~v~ 207 (210)
|.++.+++. +|+ +|++++. ++-.....|. -..|+=-+| |+..+||+|-+.+|+||++.
T Consensus 35 AFS~~lFne-~g~--LLltrRA~~K~twP~vWTNSvCsHP~~~-es~~~A~~rRl~~ELGie~~ 94 (185)
T COG1443 35 AFSSFLFNE-RGQ--LLLTRRALSKKTWPGVWTNSVCSHPLPG-ESNEDAARRRLAYELGIEPD 94 (185)
T ss_pred hhheeEECC-CCc--eeeehhhhhcccCcccccccccCCCcCC-CchHHHHHHHHHHHhCCCCc
Confidence 455666655 788 5554432 1111111231 112232367 99999999999999999875
No 99
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=44.27 E-value=20 Score=23.64 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=11.7
Q ss_pred EeeceeeCCCCCCHHHHHHHHHHHHh
Q 028360 177 ELPAGMLDDDKGDFVGTAVREVSFIL 202 (210)
Q Consensus 177 ElPaG~vd~g~Es~~~aA~REl~EET 202 (210)
.+-||..-+| --+...|.||+-||.
T Consensus 12 tClggLasPg-Pvp~~~alkELIeEL 36 (43)
T PF03487_consen 12 TCLGGLASPG-PVPSSTALKELIEEL 36 (43)
T ss_dssp ------------S-HHHHHHHHHHHH
T ss_pred HHhcccCCCC-CCCchHHHHHHHHHH
Confidence 3457777777 778888999999995
No 100
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=34.22 E-value=76 Score=28.72 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=26.3
Q ss_pred eEEEeeceee-CCCCCCHHHHHHHHHHHHhCC
Q 028360 174 VILELPAGML-DDDKGDFVGTAVREVSFILLL 204 (210)
Q Consensus 174 ~~wElPaG~v-d~g~Es~~~aA~REl~EETGi 204 (210)
..|-||-+.. +.+ ++...+|.|+|++-.|=
T Consensus 152 s~w~fP~~~~s~~~-~~lr~~ae~~Lk~~~ge 182 (263)
T KOG4548|consen 152 SVWIFPNRQFSSSE-KTLRGHAERDLKVLSGE 182 (263)
T ss_pred ceeeCCCcccCCcc-chHHHHHHHHHHHHhcc
Confidence 3799999999 887 99999999999987764
No 101
>PRK10880 adenine DNA glycosylase; Provisional
Probab=29.94 E-value=73 Score=29.74 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=22.5
Q ss_pred CCceEEEEEEEeecCCCCeEEEeeceeeCCCCCCHHHHHHHHHHHHhCCc
Q 028360 156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLD 205 (210)
Q Consensus 156 ~g~~~vlLvrQ~R~p~~~~~wElPaG~vd~g~Es~~~aA~REl~EETGi~ 205 (210)
+++ +++.++...+.-.++||||. ++.. + ..+|..|+.|+.
T Consensus 241 ~~~--~~l~~r~~~gl~~gl~~fP~--~~~~-~-----~~~~~~~~~~~~ 280 (350)
T PRK10880 241 GDE--VWLEQRPPSGLWGGLFCFPQ--FADE-E-----ELRQWLAQRGIA 280 (350)
T ss_pred CCE--EEEEECCccChhhccccCCC--Ccch-h-----hHHHHHHhcCCc
Confidence 455 56655544445556899995 3322 2 134555666764
No 102
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=29.64 E-value=98 Score=25.35 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=28.5
Q ss_pred CCCeEEEeCCCCChhhHhhhhcchhHHHHHHHHhh
Q 028360 57 SQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQS 91 (210)
Q Consensus 57 ~~gV~V~~~~~~s~~~~~~~l~~~~Fk~Wl~~~~~ 91 (210)
.++|.|..|..+|.++++.++... ..|+.+..+
T Consensus 10 dg~i~V~aP~~~s~~~I~~fl~~~--~~WI~~~~~ 42 (205)
T PF01863_consen 10 DGEIVVSAPPRVSKEEIERFLRSK--RDWILKKLQ 42 (205)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH--HHHHHHHHH
Confidence 488999999999999999988855 799987655
No 103
>PF13014 KH_3: KH domain
Probab=29.33 E-value=44 Score=20.97 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhCCceecC
Q 028360 192 GTAVREVSFILLLDFLLS 209 (210)
Q Consensus 192 ~aA~REl~EETGi~v~~~ 209 (210)
..-++|+++|||..+.+.
T Consensus 10 G~~I~~I~~~tg~~I~i~ 27 (43)
T PF13014_consen 10 GSTIKEIREETGAKIQIP 27 (43)
T ss_pred ChHHHHHHHHhCcEEEEC
Confidence 345899999999988764
No 104
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=28.57 E-value=1.2e+02 Score=20.25 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=20.4
Q ss_pred eeeEEecCCCCCCeEEEeCCCCChhhHhhhhcchhHHHHHHH
Q 028360 47 THSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKN 88 (210)
Q Consensus 47 ~~~~~~~~~~~~gV~V~~~~~~s~~~~~~~l~~~~Fk~Wl~~ 88 (210)
+..|.+++ .+|.+.-.+.+.|..+|.+ |+.|+++
T Consensus 5 ~~ki~~~~--~~Gl~y~vT~~~s~~~L~k------~~~wld~ 38 (45)
T PF12123_consen 5 TAKIIFQS--KDGLPYFVTDPLSDAELDK------FTAWLDE 38 (45)
T ss_dssp -EEEEE-T---TS-EEEEE----HHHHHH------HHHHHHH
T ss_pred EEEEEEec--CCCcEEEEeCCCCHHHHHH------HHHHHHh
Confidence 45677765 3788888889999999953 8999975
No 105
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=27.92 E-value=49 Score=28.38 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=17.1
Q ss_pred ceeeCCCC--CCHHHH----HHHHHHHHhCCc
Q 028360 180 AGMLDDDK--GDFVGT----AVREVSFILLLD 205 (210)
Q Consensus 180 aG~vd~g~--Es~~~a----A~REl~EETGi~ 205 (210)
||++..++ ++..+. +.|||.||.++.
T Consensus 97 GGHmn~~~GA~s~~evLk~n~~REleEEv~vs 128 (203)
T COG4112 97 GGHMNEGDGATSREEVLKGNLERELEEEVDVS 128 (203)
T ss_pred ccccccCCCcccHHHHHccchHHHHHHHhCcC
Confidence 56665442 333333 789999999985
No 106
>PF06615 DUF1147: Protein of unknown function (DUF1147); InterPro: IPR009527 This family consists of several short Circovirus proteins of unknown function.
Probab=24.28 E-value=72 Score=21.94 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.1
Q ss_pred EEEEEeecCCCCeEEEeeceeeC
Q 028360 162 ILTEQVRVPTGRVILELPAGMLD 184 (210)
Q Consensus 162 lLvrQ~R~p~~~~~wElPaG~vd 184 (210)
+|+-|.|.|-.+..+|-.+||+.
T Consensus 17 llilqtrkphtgnhletsggmvt 39 (59)
T PF06615_consen 17 LLILQTRKPHTGNHLETSGGMVT 39 (59)
T ss_pred EEEEEccCCCCCCceeccCCeeh
Confidence 67778899877778999999875
No 107
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=21.89 E-value=3.8e+02 Score=20.71 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=34.6
Q ss_pred eCCCCChhhHhhhhcchhHHHHHHHHhhccccccCCCcce--EEEEEeeEEEEe
Q 028360 64 AAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLL--KQVLIQGVDMFG 115 (210)
Q Consensus 64 ~~~~~s~~~~~~~l~~~~Fk~Wl~~~~~~~~~~~~~~~~L--~~~~i~s~~~f~ 115 (210)
+.+..+.+.+.++++-+++++|.+.-+. ...++.|.- ....|.++.++.
T Consensus 16 lg~~~~~~~L~~vl~g~ll~~w~~~a~~---~~~~g~y~~y~~~~~I~sv~~~~ 66 (117)
T PF13355_consen 16 LGPPHDIDSLSEVLTGPLLSQWQDRAQW---LKANGWYWEYDHKLKIDSVEVFS 66 (117)
T ss_pred hCCCcchhHHHHHhhHHHHHHHHHHHHH---HHHcCCeEEEeeeeEEEEEEEcC
Confidence 4556667789999999999999988753 122222222 477888888887
No 108
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=21.44 E-value=73 Score=21.77 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCceecC
Q 028360 192 GTAVREVSFILLLDFLLS 209 (210)
Q Consensus 192 ~aA~REl~EETGi~v~~~ 209 (210)
+.-.|+++|+||.++.+.
T Consensus 21 G~~ik~I~~~tg~~I~i~ 38 (61)
T cd02393 21 GKTIKKIIEETGVKIDIE 38 (61)
T ss_pred chHHHHHHHHHCCEEEeC
Confidence 456899999999998764
Done!