Query 028362
Match_columns 210
No_of_seqs 130 out of 1575
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 10:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.5E-41 7.5E-46 240.1 17.9 170 2-182 3-174 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 3.6E-40 7.7E-45 234.0 18.8 167 6-184 3-171 (200)
3 cd01875 RhoG RhoG subfamily. 100.0 6.3E-39 1.4E-43 238.3 22.2 188 7-199 2-191 (191)
4 cd04133 Rop_like Rop subfamily 100.0 2.8E-38 6.1E-43 231.3 22.4 174 9-182 2-175 (176)
5 KOG0078 GTP-binding protein SE 100.0 1.6E-38 3.5E-43 229.5 18.1 170 4-185 8-179 (207)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.8E-38 4E-43 225.5 17.6 167 6-184 20-189 (221)
7 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 9.1E-38 2E-42 229.9 21.5 177 5-181 2-181 (182)
8 cd04121 Rab40 Rab40 subfamily. 100.0 1.5E-37 3.2E-42 229.9 20.2 165 6-182 4-169 (189)
9 KOG0394 Ras-related GTPase [Ge 100.0 3.8E-38 8.3E-43 221.7 15.9 175 1-184 1-182 (210)
10 cd04131 Rnd Rnd subfamily. Th 100.0 4.6E-37 9.9E-42 225.7 21.5 172 9-180 2-176 (178)
11 KOG0098 GTPase Rab2, small G p 100.0 8.6E-38 1.9E-42 220.4 15.0 169 4-184 2-172 (216)
12 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 7.2E-37 1.6E-41 232.0 21.1 177 6-182 11-190 (232)
13 KOG0080 GTPase Rab18, small G 100.0 2.3E-37 5E-42 213.1 16.4 166 7-184 10-178 (209)
14 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 9.7E-37 2.1E-41 230.1 20.3 174 9-182 2-178 (222)
15 cd04134 Rho3 Rho3 subfamily. 100.0 2.9E-36 6.2E-41 223.8 22.2 187 9-199 1-189 (189)
16 cd04120 Rab12 Rab12 subfamily. 100.0 1.1E-36 2.4E-41 227.3 19.9 163 9-182 1-165 (202)
17 cd01874 Cdc42 Cdc42 subfamily. 100.0 3E-36 6.6E-41 220.9 21.5 172 8-179 1-174 (175)
18 cd04132 Rho4_like Rho4-like su 100.0 2.9E-36 6.2E-41 223.4 19.7 185 9-199 1-187 (187)
19 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4E-36 8.7E-41 219.7 19.4 164 8-183 2-167 (172)
20 PTZ00369 Ras-like protein; Pro 100.0 8.2E-36 1.8E-40 221.3 20.5 181 6-198 3-188 (189)
21 cd04144 Ras2 Ras2 subfamily. 100.0 3.6E-36 7.7E-41 223.4 18.0 178 10-199 1-190 (190)
22 cd01871 Rac1_like Rac1-like su 100.0 2E-35 4.3E-40 216.4 20.8 171 8-178 1-173 (174)
23 KOG0079 GTP-binding protein H- 100.0 8.6E-37 1.9E-41 207.6 10.1 170 1-182 1-171 (198)
24 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.3E-35 5E-40 212.4 16.4 167 4-182 10-178 (222)
25 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.6E-34 3.4E-39 216.4 20.5 164 9-183 1-171 (201)
26 cd04122 Rab14 Rab14 subfamily. 100.0 1.8E-34 3.9E-39 209.9 19.9 162 8-181 2-165 (166)
27 cd04110 Rab35 Rab35 subfamily. 100.0 2.8E-34 6.1E-39 214.7 20.7 165 6-182 4-169 (199)
28 smart00174 RHO Rho (Ras homolo 100.0 4.3E-34 9.4E-39 209.2 21.2 171 11-181 1-173 (174)
29 cd04136 Rap_like Rap-like subf 100.0 2.4E-34 5.2E-39 208.3 19.1 159 9-179 2-162 (163)
30 cd04175 Rap1 Rap1 subgroup. T 100.0 2.9E-34 6.2E-39 208.3 19.3 161 8-180 1-163 (164)
31 KOG0393 Ras-related small GTPa 100.0 5.1E-35 1.1E-39 212.2 13.3 179 6-184 2-183 (198)
32 PLN03071 GTP-binding nuclear p 100.0 1.4E-33 3.1E-38 213.6 21.2 163 6-182 11-174 (219)
33 cd01867 Rab8_Rab10_Rab13_like 100.0 1E-33 2.2E-38 206.1 19.6 163 7-181 2-166 (167)
34 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2.4E-33 5.3E-38 205.2 21.2 169 9-177 1-171 (173)
35 cd04135 Tc10 TC10 subfamily. 100.0 3.1E-33 6.8E-38 204.7 21.7 171 9-179 1-173 (174)
36 cd01865 Rab3 Rab3 subfamily. 100.0 2E-33 4.2E-38 204.2 20.3 161 9-181 2-164 (165)
37 cd04117 Rab15 Rab15 subfamily. 100.0 1.6E-33 3.5E-38 203.9 19.5 158 9-178 1-160 (161)
38 KOG0086 GTPase Rab4, small G p 100.0 9.6E-35 2.1E-39 198.7 12.2 172 1-184 2-175 (214)
39 cd04127 Rab27A Rab27a subfamil 100.0 1.1E-33 2.5E-38 208.1 19.0 163 7-181 3-178 (180)
40 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.1E-33 4.6E-38 207.0 20.4 167 9-183 1-169 (182)
41 cd04125 RabA_like RabA-like su 100.0 1.7E-33 3.7E-38 208.7 19.5 162 9-182 1-164 (188)
42 KOG0093 GTPase Rab3, small G p 100.0 2.5E-34 5.5E-39 195.3 13.6 165 8-184 21-187 (193)
43 cd04109 Rab28 Rab28 subfamily. 100.0 1.9E-33 4.2E-38 212.5 20.1 161 9-181 1-167 (215)
44 PF00071 Ras: Ras family; Int 100.0 1.3E-33 2.8E-38 204.3 18.3 159 10-180 1-161 (162)
45 cd04176 Rap2 Rap2 subgroup. T 100.0 2.5E-33 5.5E-38 203.1 19.5 160 8-179 1-162 (163)
46 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.1E-33 8.9E-38 202.6 19.8 161 8-180 2-164 (166)
47 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.2E-33 7E-38 201.9 19.2 159 8-179 1-161 (162)
48 cd04140 ARHI_like ARHI subfami 100.0 3.6E-33 7.9E-38 202.8 19.0 158 9-178 2-163 (165)
49 cd04126 Rab20 Rab20 subfamily. 100.0 2.6E-33 5.7E-38 211.3 18.8 169 9-181 1-191 (220)
50 smart00173 RAS Ras subfamily o 100.0 4E-33 8.7E-38 202.2 18.9 160 9-180 1-162 (164)
51 cd04112 Rab26 Rab26 subfamily. 100.0 5.2E-33 1.1E-37 206.6 19.6 162 9-182 1-165 (191)
52 cd00877 Ran Ran (Ras-related n 100.0 1.1E-32 2.4E-37 200.4 20.6 160 9-182 1-161 (166)
53 cd01873 RhoBTB RhoBTB subfamil 100.0 8E-33 1.7E-37 205.7 19.9 168 8-178 2-194 (195)
54 cd04119 RJL RJL (RabJ-Like) su 100.0 7.8E-33 1.7E-37 201.1 19.3 161 9-181 1-168 (168)
55 cd01864 Rab19 Rab19 subfamily. 100.0 7.6E-33 1.7E-37 201.0 19.2 161 7-178 2-164 (165)
56 cd04145 M_R_Ras_like M-Ras/R-R 100.0 7.7E-33 1.7E-37 200.5 19.0 160 8-179 2-163 (164)
57 cd04106 Rab23_lke Rab23-like s 100.0 7.5E-33 1.6E-37 200.3 18.8 158 9-178 1-161 (162)
58 cd04116 Rab9 Rab9 subfamily. 100.0 1.6E-32 3.5E-37 200.2 20.0 162 5-178 2-169 (170)
59 cd04124 RabL2 RabL2 subfamily. 100.0 2.3E-32 5E-37 197.8 20.3 158 9-181 1-159 (161)
60 PLN03110 Rab GTPase; Provision 100.0 1.9E-32 4.2E-37 207.1 20.0 164 6-181 10-175 (216)
61 cd04103 Centaurin_gamma Centau 100.0 2.1E-32 4.6E-37 197.3 19.1 155 9-178 1-157 (158)
62 KOG0091 GTPase Rab39, small G 100.0 1.6E-33 3.5E-38 194.7 12.1 163 7-181 7-174 (213)
63 cd01870 RhoA_like RhoA-like su 100.0 6.7E-32 1.4E-36 197.8 21.3 171 9-179 2-174 (175)
64 smart00176 RAN Ran (Ras-relate 100.0 2.6E-32 5.7E-37 203.4 19.3 155 14-182 1-156 (200)
65 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.6E-32 7.9E-37 198.5 19.6 162 10-181 2-166 (170)
66 cd04142 RRP22 RRP22 subfamily. 100.0 4.5E-32 9.8E-37 202.3 20.5 166 9-185 1-179 (198)
67 cd01868 Rab11_like Rab11-like. 100.0 3.9E-32 8.5E-37 197.2 19.6 161 7-179 2-164 (165)
68 KOG0095 GTPase Rab30, small G 100.0 1.7E-33 3.8E-38 191.9 11.5 164 6-181 5-170 (213)
69 cd04113 Rab4 Rab4 subfamily. 100.0 3.3E-32 7.1E-37 196.9 18.9 159 9-179 1-161 (161)
70 cd04129 Rho2 Rho2 subfamily. 100.0 1.2E-31 2.6E-36 198.7 22.2 174 9-182 2-175 (187)
71 cd04177 RSR1 RSR1 subgroup. R 100.0 6E-32 1.3E-36 196.9 20.1 162 8-180 1-164 (168)
72 cd04118 Rab24 Rab24 subfamily. 100.0 1.1E-31 2.4E-36 199.8 21.3 166 9-182 1-168 (193)
73 KOG0088 GTPase Rab21, small G 100.0 1.5E-33 3.2E-38 194.0 10.2 166 6-183 11-178 (218)
74 cd04143 Rhes_like Rhes_like su 100.0 4.1E-32 8.9E-37 208.5 19.4 164 9-183 1-174 (247)
75 cd04115 Rab33B_Rab33A Rab33B/R 100.0 7E-32 1.5E-36 197.0 19.6 161 7-179 1-168 (170)
76 cd01866 Rab2 Rab2 subfamily. 100.0 8.6E-32 1.9E-36 196.1 19.8 163 7-181 3-167 (168)
77 cd01892 Miro2 Miro2 subfamily. 100.0 6.3E-32 1.4E-36 197.0 19.1 164 6-181 2-167 (169)
78 cd04111 Rab39 Rab39 subfamily. 100.0 6.6E-32 1.4E-36 203.4 19.2 163 8-182 2-168 (211)
79 PLN03108 Rab family protein; P 100.0 7.6E-32 1.6E-36 203.1 19.5 167 4-182 2-170 (210)
80 cd04148 RGK RGK subfamily. Th 100.0 5.2E-32 1.1E-36 205.3 17.8 160 9-182 1-165 (221)
81 cd04146 RERG_RasL11_like RERG/ 100.0 9.1E-32 2E-36 195.4 17.7 159 10-180 1-164 (165)
82 cd00157 Rho Rho (Ras homology) 100.0 4.5E-31 9.7E-36 192.5 20.9 169 9-177 1-170 (171)
83 smart00175 RAB Rab subfamily o 100.0 4.2E-31 9E-36 191.4 19.6 161 9-181 1-163 (164)
84 KOG0081 GTPase Rab27, small G 100.0 5.9E-34 1.3E-38 196.1 4.1 167 6-184 7-185 (219)
85 cd04101 RabL4 RabL4 (Rab-like4 100.0 4.2E-31 9E-36 191.6 18.8 159 9-179 1-163 (164)
86 cd01860 Rab5_related Rab5-rela 100.0 6.2E-31 1.3E-35 190.4 19.4 160 8-179 1-162 (163)
87 cd01862 Rab7 Rab7 subfamily. 100.0 9.2E-31 2E-35 191.1 19.6 163 9-182 1-169 (172)
88 PLN03118 Rab family protein; P 100.0 1.3E-30 2.7E-35 196.7 20.8 167 5-183 11-180 (211)
89 cd04137 RheB Rheb (Ras Homolog 100.0 6.3E-31 1.4E-35 193.6 18.7 177 9-199 2-180 (180)
90 cd01861 Rab6 Rab6 subfamily. 100.0 8.6E-31 1.9E-35 189.3 19.0 158 9-178 1-160 (161)
91 PLN00223 ADP-ribosylation fact 100.0 2.9E-31 6.3E-36 195.5 15.5 161 6-182 15-180 (181)
92 cd04123 Rab21 Rab21 subfamily. 100.0 2.7E-30 5.8E-35 186.6 19.6 159 9-179 1-161 (162)
93 cd04139 RalA_RalB RalA/RalB su 100.0 2.3E-30 4.9E-35 187.4 19.1 160 9-180 1-162 (164)
94 KOG0395 Ras-related GTPase [Ge 100.0 7.4E-31 1.6E-35 194.3 16.8 165 7-183 2-168 (196)
95 cd01863 Rab18 Rab18 subfamily. 100.0 4.5E-30 9.7E-35 185.6 19.7 157 9-178 1-160 (161)
96 cd04149 Arf6 Arf6 subfamily. 100.0 4E-31 8.7E-36 192.6 14.2 156 6-177 7-167 (168)
97 cd01893 Miro1 Miro1 subfamily. 100.0 5.1E-30 1.1E-34 186.4 18.3 164 9-181 1-165 (166)
98 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2.5E-30 5.4E-35 190.9 16.5 166 7-186 2-176 (183)
99 PTZ00133 ADP-ribosylation fact 100.0 1.7E-30 3.7E-35 191.6 15.4 161 6-182 15-180 (182)
100 smart00177 ARF ARF-like small 100.0 2.9E-30 6.3E-35 189.3 15.9 159 6-180 11-174 (175)
101 cd04158 ARD1 ARD1 subfamily. 100.0 3.2E-30 7E-35 188.0 15.9 156 10-182 1-163 (169)
102 KOG0083 GTPase Rab26/Rab37, sm 100.0 2.2E-32 4.8E-37 183.2 3.8 159 12-182 1-162 (192)
103 cd04114 Rab30 Rab30 subfamily. 100.0 3.6E-29 7.8E-34 182.3 20.6 162 6-179 5-168 (169)
104 cd04150 Arf1_5_like Arf1-Arf5- 100.0 4.3E-30 9.3E-35 185.6 14.4 153 9-177 1-158 (159)
105 cd04147 Ras_dva Ras-dva subfam 100.0 2.5E-29 5.4E-34 187.8 18.5 161 10-181 1-164 (198)
106 cd00876 Ras Ras family. The R 100.0 1.9E-29 4.2E-34 181.7 16.9 157 10-178 1-159 (160)
107 PTZ00132 GTP-binding nuclear p 100.0 7E-29 1.5E-33 187.7 20.7 168 3-184 4-172 (215)
108 cd00154 Rab Rab family. Rab G 100.0 3E-29 6.5E-34 180.0 17.8 156 9-176 1-158 (159)
109 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.8E-30 4E-35 188.4 11.5 153 10-177 1-163 (164)
110 KOG0097 GTPase Rab14, small G 100.0 1.2E-29 2.5E-34 171.9 13.1 165 6-182 9-175 (215)
111 cd04154 Arl2 Arl2 subfamily. 100.0 2E-28 4.4E-33 179.2 16.1 155 6-177 12-172 (173)
112 cd04157 Arl6 Arl6 subfamily. 100.0 2.7E-28 6E-33 176.3 13.4 152 10-177 1-161 (162)
113 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 5.8E-28 1.3E-32 176.9 15.0 155 6-177 13-173 (174)
114 cd04102 RabL3 RabL3 (Rab-like3 100.0 6.6E-28 1.4E-32 179.7 15.4 150 9-166 1-176 (202)
115 PF00025 Arf: ADP-ribosylation 100.0 1.2E-27 2.5E-32 175.3 15.6 159 5-179 11-175 (175)
116 cd00879 Sar1 Sar1 subfamily. 100.0 1.9E-27 4.1E-32 176.5 16.3 157 6-178 17-189 (190)
117 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.9E-28 4.2E-33 178.3 10.7 157 10-177 1-166 (167)
118 cd04151 Arl1 Arl1 subfamily. 100.0 1E-27 2.2E-32 172.9 14.1 151 10-177 1-157 (158)
119 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.1E-27 6.7E-32 170.6 14.5 152 10-177 1-159 (160)
120 smart00178 SAR Sar1p-like memb 100.0 3.9E-27 8.5E-32 174.0 15.1 157 6-178 15-183 (184)
121 cd04160 Arfrp1 Arfrp1 subfamil 100.0 7.6E-27 1.7E-31 169.7 15.4 152 10-177 1-166 (167)
122 PLN00023 GTP-binding protein; 99.9 2.2E-26 4.8E-31 179.7 16.6 147 5-156 18-191 (334)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.9E-26 4.1E-31 166.1 14.9 152 10-177 1-157 (158)
124 KOG0073 GTP-binding ADP-ribosy 99.9 6.1E-26 1.3E-30 157.2 15.6 162 6-181 14-179 (185)
125 KOG0070 GTP-binding ADP-ribosy 99.9 2.1E-26 4.5E-31 163.4 13.5 163 4-182 13-180 (181)
126 PTZ00099 rab6; Provisional 99.9 1.3E-25 2.7E-30 164.5 17.1 141 31-183 3-145 (176)
127 cd04159 Arl10_like Arl10-like 99.9 1.6E-25 3.5E-30 160.7 16.0 152 11-177 2-158 (159)
128 COG1100 GTPase SAR1 and relate 99.9 7E-25 1.5E-29 166.2 16.9 178 7-184 4-189 (219)
129 KOG4252 GTP-binding protein [S 99.9 2.3E-27 4.9E-32 166.7 2.9 165 5-181 17-182 (246)
130 cd01890 LepA LepA subfamily. 99.9 4.2E-25 9.1E-30 162.3 14.5 155 10-180 2-177 (179)
131 cd04155 Arl3 Arl3 subfamily. 99.9 5.8E-25 1.3E-29 160.7 14.5 154 5-177 11-172 (173)
132 cd01897 NOG NOG1 is a nucleola 99.9 1.5E-24 3.2E-29 157.7 16.0 155 9-179 1-167 (168)
133 TIGR02528 EutP ethanolamine ut 99.9 1.6E-25 3.5E-30 158.6 10.4 135 10-176 2-141 (142)
134 TIGR00231 small_GTP small GTP- 99.9 3.6E-24 7.8E-29 153.3 16.6 157 8-176 1-160 (161)
135 cd01898 Obg Obg subfamily. Th 99.9 1.3E-24 2.7E-29 158.4 14.4 155 10-178 2-169 (170)
136 KOG0075 GTP-binding ADP-ribosy 99.9 1.3E-25 2.7E-30 153.0 7.7 155 7-179 19-181 (186)
137 KOG0071 GTP-binding ADP-ribosy 99.9 2.9E-24 6.2E-29 145.2 13.2 160 5-180 14-178 (180)
138 PRK12299 obgE GTPase CgtA; Rev 99.9 8.3E-24 1.8E-28 168.6 15.1 159 9-181 159-329 (335)
139 cd04171 SelB SelB subfamily. 99.9 8E-24 1.7E-28 153.0 13.5 153 10-177 2-163 (164)
140 cd01878 HflX HflX subfamily. 99.9 1.1E-23 2.4E-28 158.0 14.2 153 7-179 40-204 (204)
141 KOG1673 Ras GTPases [General f 99.9 8.3E-24 1.8E-28 145.4 12.1 173 4-183 16-189 (205)
142 cd00882 Ras_like_GTPase Ras-li 99.9 1E-22 2.2E-27 144.4 15.3 153 13-176 1-156 (157)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.1E-22 2.3E-27 147.8 14.9 158 10-180 2-166 (168)
144 PRK04213 GTP-binding protein; 99.9 1.9E-23 4.1E-28 156.4 10.4 156 6-182 7-194 (201)
145 PF08477 Miro: Miro-like prote 99.9 7.5E-23 1.6E-27 140.6 11.7 114 10-123 1-119 (119)
146 cd01879 FeoB Ferrous iron tran 99.9 3E-22 6.4E-27 144.0 15.1 147 13-179 1-156 (158)
147 TIGR00436 era GTP-binding prot 99.9 2.2E-22 4.7E-27 157.1 14.9 155 10-182 2-166 (270)
148 TIGR03156 GTP_HflX GTP-binding 99.9 1.9E-22 4.1E-27 162.0 13.9 152 7-178 188-350 (351)
149 PRK15494 era GTPase Era; Provi 99.9 3.5E-22 7.6E-27 160.2 15.2 159 5-182 49-218 (339)
150 TIGR02729 Obg_CgtA Obg family 99.9 3.5E-22 7.6E-27 159.2 14.6 156 9-179 158-328 (329)
151 cd01894 EngA1 EngA1 subfamily. 99.9 7.5E-22 1.6E-26 141.6 14.0 147 12-179 1-157 (157)
152 KOG0076 GTP-binding ADP-ribosy 99.9 6.4E-23 1.4E-27 143.6 6.6 164 4-182 13-189 (197)
153 KOG3883 Ras family small GTPas 99.9 7.9E-21 1.7E-25 130.5 16.0 167 7-185 8-180 (198)
154 cd04163 Era Era subfamily. Er 99.9 2.2E-21 4.7E-26 140.2 13.9 158 7-178 2-167 (168)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.1E-21 6.8E-26 159.1 16.3 151 7-182 202-362 (442)
156 cd00881 GTP_translation_factor 99.9 1.2E-21 2.6E-26 144.8 12.5 159 10-180 1-187 (189)
157 cd01891 TypA_BipA TypA (tyrosi 99.9 1.1E-21 2.4E-26 146.1 12.1 149 9-171 3-173 (194)
158 PRK05291 trmE tRNA modificatio 99.9 2E-21 4.4E-26 161.0 14.6 148 7-181 214-371 (449)
159 PRK03003 GTP-binding protein D 99.9 2.1E-21 4.5E-26 162.3 14.5 160 7-180 210-382 (472)
160 cd01881 Obg_like The Obg-like 99.9 1.9E-21 4.1E-26 142.2 12.6 153 13-178 1-175 (176)
161 cd04164 trmE TrmE (MnmE, ThdF, 99.9 3.5E-21 7.6E-26 138.0 13.8 145 9-179 2-156 (157)
162 PRK15467 ethanolamine utilizat 99.9 1.7E-21 3.6E-26 140.4 11.5 142 10-182 3-149 (158)
163 PRK03003 GTP-binding protein D 99.9 1.7E-21 3.6E-26 162.9 13.1 154 7-181 37-200 (472)
164 TIGR01393 lepA GTP-binding pro 99.9 4.2E-21 9.2E-26 163.5 15.6 160 8-183 3-183 (595)
165 PRK12297 obgE GTPase CgtA; Rev 99.9 9.9E-21 2.2E-25 154.6 16.7 156 10-183 160-330 (424)
166 cd04105 SR_beta Signal recogni 99.9 6.7E-21 1.4E-25 142.7 14.3 118 10-127 2-124 (203)
167 KOG0074 GTP-binding ADP-ribosy 99.9 3E-21 6.4E-26 130.9 10.9 158 4-179 13-178 (185)
168 TIGR03594 GTPase_EngA ribosome 99.9 1.7E-20 3.7E-25 155.6 17.9 159 6-181 170-345 (429)
169 PRK11058 GTPase HflX; Provisio 99.9 5.9E-21 1.3E-25 156.7 14.7 156 9-181 198-363 (426)
170 TIGR00487 IF-2 translation ini 99.9 1.1E-20 2.5E-25 160.3 16.5 154 6-177 85-247 (587)
171 PF02421 FeoB_N: Ferrous iron 99.9 5E-21 1.1E-25 135.9 12.0 147 9-175 1-156 (156)
172 PRK00089 era GTPase Era; Revie 99.9 1.1E-20 2.4E-25 149.2 15.3 159 7-181 4-172 (292)
173 cd01889 SelB_euk SelB subfamil 99.9 8.8E-21 1.9E-25 141.0 12.9 161 9-182 1-188 (192)
174 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 4E-21 8.8E-26 136.5 10.2 169 1-183 1-172 (216)
175 cd01895 EngA2 EngA2 subfamily. 99.9 3.4E-20 7.3E-25 134.9 15.5 156 7-178 1-173 (174)
176 KOG0072 GTP-binding ADP-ribosy 99.8 1.9E-21 4.2E-26 132.2 6.6 161 6-182 16-181 (182)
177 PRK00093 GTP-binding protein D 99.8 2.8E-20 6E-25 154.6 14.4 150 9-179 2-161 (435)
178 CHL00189 infB translation init 99.8 3.3E-20 7.1E-25 159.8 14.8 161 6-179 242-409 (742)
179 PRK00454 engB GTP-binding prot 99.8 5.2E-20 1.1E-24 137.1 13.9 161 5-180 21-194 (196)
180 PRK12298 obgE GTPase CgtA; Rev 99.8 6E-20 1.3E-24 149.2 14.6 160 10-182 161-335 (390)
181 cd01888 eIF2_gamma eIF2-gamma 99.8 5.3E-20 1.1E-24 137.9 12.4 164 9-182 1-201 (203)
182 PRK05306 infB translation init 99.8 1.9E-19 4.2E-24 156.3 17.1 158 6-178 288-450 (787)
183 PRK12296 obgE GTPase CgtA; Rev 99.8 1.6E-19 3.5E-24 149.4 15.5 159 9-182 160-342 (500)
184 TIGR00475 selB selenocysteine- 99.8 1.3E-19 2.9E-24 154.3 15.1 158 9-183 1-169 (581)
185 TIGR03594 GTPase_EngA ribosome 99.8 1E-19 2.2E-24 151.0 13.7 152 10-182 1-162 (429)
186 TIGR03598 GTPase_YsxC ribosome 99.8 6.4E-20 1.4E-24 134.9 10.8 150 5-169 15-179 (179)
187 PRK05433 GTP-binding protein L 99.8 8.3E-20 1.8E-24 155.8 12.5 162 6-183 5-187 (600)
188 cd01896 DRG The developmentall 99.8 8.3E-19 1.8E-23 133.9 16.8 149 10-179 2-225 (233)
189 TIGR00491 aIF-2 translation in 99.8 2.8E-19 6.1E-24 151.6 15.5 166 7-179 3-215 (590)
190 COG1159 Era GTPase [General fu 99.8 5E-19 1.1E-23 135.2 14.3 162 5-182 3-174 (298)
191 TIGR00437 feoB ferrous iron tr 99.8 6.2E-19 1.3E-23 150.3 16.0 145 15-179 1-154 (591)
192 KOG4423 GTP-binding protein-li 99.8 4.4E-22 9.6E-27 140.9 -2.7 168 6-183 23-197 (229)
193 PF00009 GTP_EFTU: Elongation 99.8 6.7E-20 1.5E-24 135.8 8.7 161 6-180 1-187 (188)
194 cd00880 Era_like Era (E. coli 99.8 6E-19 1.3E-23 126.2 13.1 149 13-178 1-162 (163)
195 PRK09518 bifunctional cytidyla 99.8 8.8E-19 1.9E-23 152.9 15.6 157 7-181 449-622 (712)
196 PRK09518 bifunctional cytidyla 99.8 1.1E-18 2.4E-23 152.3 16.0 154 7-181 274-437 (712)
197 PRK09554 feoB ferrous iron tra 99.8 3.2E-18 6.9E-23 149.3 18.4 154 7-179 2-167 (772)
198 PRK00093 GTP-binding protein D 99.8 3.5E-18 7.6E-23 142.1 17.0 161 6-180 171-344 (435)
199 PRK12317 elongation factor 1-a 99.8 6.9E-19 1.5E-23 145.7 12.1 163 3-172 1-197 (425)
200 TIGR00483 EF-1_alpha translati 99.8 5.8E-19 1.3E-23 146.1 11.6 160 5-172 4-199 (426)
201 COG2229 Predicted GTPase [Gene 99.8 4.3E-18 9.3E-23 121.0 14.1 158 4-178 6-176 (187)
202 KOG1707 Predicted Ras related/ 99.8 2.6E-19 5.7E-24 146.6 8.3 172 1-183 1-178 (625)
203 PF10662 PduV-EutP: Ethanolami 99.8 1.7E-18 3.6E-23 120.4 10.0 136 10-176 3-142 (143)
204 COG1160 Predicted GTPases [Gen 99.8 6.6E-18 1.4E-22 135.9 13.3 151 9-180 4-165 (444)
205 PRK04004 translation initiatio 99.8 1.4E-17 3E-22 141.8 15.7 165 6-177 4-215 (586)
206 cd01876 YihA_EngB The YihA (En 99.8 7.4E-18 1.6E-22 121.9 11.9 153 10-178 1-169 (170)
207 COG1160 Predicted GTPases [Gen 99.8 3.6E-17 7.8E-22 131.6 16.0 157 7-179 177-350 (444)
208 TIGR03680 eif2g_arch translati 99.8 6.4E-18 1.4E-22 138.8 11.8 166 6-181 2-197 (406)
209 PRK10218 GTP-binding protein; 99.7 4.5E-17 9.7E-22 138.7 15.7 164 7-183 4-198 (607)
210 PRK10512 selenocysteinyl-tRNA- 99.7 3E-17 6.5E-22 140.4 14.5 160 10-181 2-167 (614)
211 PRK04000 translation initiatio 99.7 2.3E-17 4.9E-22 135.6 12.7 168 3-181 4-202 (411)
212 COG0486 ThdF Predicted GTPase 99.7 3.9E-17 8.3E-22 131.8 13.7 153 7-182 216-378 (454)
213 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.2E-17 2.7E-22 125.6 9.7 153 10-171 1-185 (208)
214 cd04167 Snu114p Snu114p subfam 99.7 1.5E-17 3.4E-22 125.5 9.8 112 10-125 2-136 (213)
215 TIGR01394 TypA_BipA GTP-bindin 99.7 3.6E-17 7.7E-22 139.4 12.5 161 10-183 3-194 (594)
216 cd04168 TetM_like Tet(M)-like 99.7 5.5E-17 1.2E-21 124.1 12.3 114 10-127 1-131 (237)
217 KOG1423 Ras-like GTPase ERA [C 99.7 2.5E-17 5.5E-22 125.8 10.1 175 5-182 69-273 (379)
218 KOG0077 Vesicle coat complex C 99.7 1E-17 2.2E-22 116.8 6.9 157 6-178 18-191 (193)
219 cd04165 GTPBP1_like GTPBP1-lik 99.7 9.6E-17 2.1E-21 121.7 12.9 155 10-176 1-219 (224)
220 KOG1489 Predicted GTP-binding 99.7 3.1E-16 6.7E-21 120.4 14.0 153 10-178 198-365 (366)
221 cd04104 p47_IIGP_like p47 (47- 99.7 1.2E-16 2.6E-21 119.2 11.4 169 8-182 1-186 (197)
222 cd01884 EF_Tu EF-Tu subfamily. 99.7 2.3E-16 5E-21 117.2 12.2 150 8-168 2-171 (195)
223 cd01883 EF1_alpha Eukaryotic e 99.7 6.8E-17 1.5E-21 122.5 8.1 155 10-170 1-195 (219)
224 COG0370 FeoB Fe2+ transport sy 99.7 9.9E-16 2.1E-20 128.6 15.6 157 7-183 2-167 (653)
225 COG2262 HflX GTPases [General 99.7 6E-16 1.3E-20 122.9 13.6 158 6-182 190-358 (411)
226 PRK12736 elongation factor Tu; 99.7 9.9E-16 2.1E-20 125.5 13.5 166 4-180 8-201 (394)
227 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 3.1E-16 6.8E-21 118.5 9.5 168 10-184 1-180 (232)
228 PRK12735 elongation factor Tu; 99.7 1E-15 2.2E-20 125.5 13.2 166 4-180 8-203 (396)
229 TIGR00485 EF-Tu translation el 99.7 1.4E-15 3.1E-20 124.6 13.1 152 4-166 8-179 (394)
230 cd00066 G-alpha G protein alph 99.7 3.9E-15 8.4E-20 118.6 14.9 129 54-182 159-313 (317)
231 COG0481 LepA Membrane GTPase L 99.6 9.9E-16 2.1E-20 123.3 9.0 165 4-184 5-190 (603)
232 PF09439 SRPRB: Signal recogni 99.6 3.2E-16 7E-21 113.7 5.6 117 8-127 3-127 (181)
233 cd01850 CDC_Septin CDC/Septin. 99.6 1.4E-14 3E-19 113.2 14.7 142 8-162 4-184 (276)
234 COG0218 Predicted GTPase [Gene 99.6 1.4E-14 2.9E-19 105.4 13.6 158 6-181 22-198 (200)
235 KOG0462 Elongation factor-type 99.6 1.4E-14 3.1E-19 118.3 15.1 163 7-183 59-238 (650)
236 CHL00071 tufA elongation facto 99.6 6.1E-15 1.3E-19 121.4 13.0 152 4-167 8-180 (409)
237 cd04169 RF3 RF3 subfamily. Pe 99.6 8E-15 1.7E-19 114.0 12.3 115 9-127 3-138 (267)
238 cd01899 Ygr210 Ygr210 subfamil 99.6 2.1E-14 4.6E-19 113.9 14.8 80 11-90 1-110 (318)
239 COG1163 DRG Predicted GTPase [ 99.6 4.7E-14 1E-18 108.9 15.9 153 8-180 63-289 (365)
240 smart00275 G_alpha G protein a 99.6 1.8E-14 3.9E-19 115.6 12.8 128 55-182 183-336 (342)
241 PRK13351 elongation factor G; 99.6 9.5E-15 2.1E-19 127.6 11.7 115 6-127 6-140 (687)
242 PRK00049 elongation factor Tu; 99.6 2.4E-14 5.3E-19 117.3 13.3 165 4-179 8-202 (396)
243 COG0536 Obg Predicted GTPase [ 99.6 3.9E-14 8.5E-19 110.2 13.1 160 11-183 162-336 (369)
244 PRK00741 prfC peptide chain re 99.6 2.3E-14 4.9E-19 120.8 12.8 118 6-127 8-146 (526)
245 cd01885 EF2 EF2 (for archaea a 99.6 1.4E-14 3.1E-19 109.5 10.4 112 10-125 2-138 (222)
246 TIGR02034 CysN sulfate adenyly 99.6 9.2E-15 2E-19 120.2 9.7 153 9-170 1-187 (406)
247 PRK05124 cysN sulfate adenylyl 99.6 8.8E-15 1.9E-19 122.2 9.7 158 5-171 24-216 (474)
248 PLN00043 elongation factor 1-a 99.6 2.3E-14 4.9E-19 118.9 11.9 159 5-170 4-203 (447)
249 COG0532 InfB Translation initi 99.6 6E-14 1.3E-18 115.0 13.9 157 6-179 3-169 (509)
250 COG1084 Predicted GTPase [Gene 99.6 4.4E-14 9.4E-19 109.4 12.3 159 7-182 167-338 (346)
251 PLN03127 Elongation factor Tu; 99.6 7.2E-14 1.6E-18 115.8 14.3 165 4-180 57-252 (447)
252 KOG3905 Dynein light intermedi 99.6 4.4E-14 9.6E-19 109.0 11.8 166 9-181 53-291 (473)
253 PF01926 MMR_HSR1: 50S ribosom 99.6 5E-14 1.1E-18 96.2 10.9 104 10-121 1-116 (116)
254 PRK09866 hypothetical protein; 99.6 1E-13 2.2E-18 116.5 14.6 110 56-177 230-350 (741)
255 PLN03126 Elongation factor Tu; 99.6 2.3E-14 5E-19 119.4 10.7 153 4-167 77-249 (478)
256 PRK05506 bifunctional sulfate 99.6 1.8E-14 3.9E-19 124.7 10.4 158 4-170 20-211 (632)
257 cd01886 EF-G Elongation factor 99.6 3.9E-14 8.5E-19 110.3 11.3 112 10-127 1-131 (270)
258 COG3596 Predicted GTPase [Gene 99.6 1.5E-14 3.3E-19 109.5 8.2 174 5-184 36-226 (296)
259 PTZ00141 elongation factor 1- 99.6 5.7E-14 1.2E-18 116.6 12.0 158 5-170 4-203 (446)
260 cd04170 EF-G_bact Elongation f 99.5 6.1E-14 1.3E-18 109.5 11.5 114 10-127 1-131 (268)
261 PTZ00327 eukaryotic translatio 99.5 8.7E-14 1.9E-18 115.3 11.5 168 4-182 30-235 (460)
262 KOG1532 GTPase XAB1, interacts 99.5 3.9E-14 8.5E-19 107.0 7.8 174 5-180 16-264 (366)
263 PRK09602 translation-associate 99.5 5.5E-13 1.2E-17 108.9 13.9 82 9-90 2-113 (396)
264 COG4917 EutP Ethanolamine util 99.5 5.6E-14 1.2E-18 93.8 6.4 137 10-177 3-143 (148)
265 KOG0090 Signal recognition par 99.5 1.4E-13 3E-18 100.3 8.7 165 9-178 39-237 (238)
266 TIGR00484 EF-G translation elo 99.5 5.7E-13 1.2E-17 116.4 14.1 118 4-127 6-142 (689)
267 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.9E-12 4.2E-17 96.4 14.1 163 9-181 1-185 (196)
268 PF05783 DLIC: Dynein light in 99.5 1.4E-12 3E-17 108.0 14.0 173 7-183 24-267 (472)
269 TIGR00503 prfC peptide chain r 99.5 4.5E-13 9.7E-18 113.1 11.3 117 6-126 9-146 (527)
270 KOG0082 G-protein alpha subuni 99.5 2.3E-12 4.9E-17 102.1 13.6 129 54-182 193-346 (354)
271 KOG1191 Mitochondrial GTPase [ 99.5 5.9E-13 1.3E-17 107.9 10.3 169 6-184 266-454 (531)
272 KOG1145 Mitochondrial translat 99.5 1.7E-12 3.7E-17 106.4 13.0 153 6-179 151-315 (683)
273 PRK14845 translation initiatio 99.4 2E-12 4.3E-17 115.5 14.3 154 19-179 472-672 (1049)
274 KOG1707 Predicted Ras related/ 99.4 3.8E-12 8.2E-17 105.1 14.8 165 4-183 421-586 (625)
275 COG2895 CysN GTPases - Sulfate 99.4 5.2E-13 1.1E-17 104.2 9.2 158 4-170 2-193 (431)
276 COG5256 TEF1 Translation elong 99.4 8.7E-13 1.9E-17 105.1 10.6 160 4-170 3-201 (428)
277 PRK12739 elongation factor G; 99.4 4.6E-12 1E-16 110.8 15.2 116 6-127 6-140 (691)
278 PRK13768 GTPase; Provisional 99.4 1E-12 2.2E-17 101.5 9.3 124 57-180 98-247 (253)
279 smart00010 small_GTPase Small 99.4 4.9E-12 1.1E-16 87.0 11.0 113 9-169 1-115 (124)
280 PRK12740 elongation factor G; 99.4 1.7E-12 3.8E-17 113.3 10.8 110 14-127 1-127 (668)
281 TIGR00157 ribosome small subun 99.4 2.2E-12 4.8E-17 99.2 9.6 96 67-177 24-120 (245)
282 PF03029 ATP_bind_1: Conserved 99.4 9.8E-14 2.1E-18 106.0 1.9 121 57-179 92-236 (238)
283 TIGR00101 ureG urease accessor 99.4 1.7E-11 3.8E-16 91.3 13.6 102 56-180 92-196 (199)
284 PRK00007 elongation factor G; 99.4 1.9E-11 4.1E-16 106.9 14.4 117 5-127 7-142 (693)
285 KOG0461 Selenocysteine-specifi 99.3 2E-11 4.4E-16 95.3 12.0 171 6-187 5-200 (522)
286 TIGR00490 aEF-2 translation el 99.3 2.8E-12 6E-17 112.5 8.3 117 6-126 17-152 (720)
287 TIGR00991 3a0901s02IAP34 GTP-b 99.3 6.1E-11 1.3E-15 92.9 13.0 119 6-127 36-168 (313)
288 cd01853 Toc34_like Toc34-like 99.3 5.4E-11 1.2E-15 91.5 12.1 121 5-128 28-165 (249)
289 PF00503 G-alpha: G-protein al 99.3 1.5E-10 3.2E-15 95.1 15.2 124 56-179 236-389 (389)
290 KOG3886 GTP-binding protein [S 99.3 5.1E-12 1.1E-16 93.4 5.4 166 8-182 4-180 (295)
291 TIGR00073 hypB hydrogenase acc 99.3 5.3E-11 1.1E-15 89.5 10.8 152 6-178 20-205 (207)
292 PRK09435 membrane ATPase/prote 99.3 6.4E-11 1.4E-15 94.3 11.7 109 54-181 147-261 (332)
293 KOG1490 GTP-binding protein CR 99.2 6E-11 1.3E-15 96.6 9.9 163 7-182 167-343 (620)
294 cd01882 BMS1 Bms1. Bms1 is an 99.2 3.6E-10 7.9E-15 86.0 13.7 144 6-167 37-183 (225)
295 PTZ00258 GTP-binding protein; 99.2 5.8E-10 1.3E-14 90.5 15.1 84 7-90 20-126 (390)
296 PF04548 AIG1: AIG1 family; I 99.2 9.5E-11 2.1E-15 88.4 9.7 166 9-182 1-188 (212)
297 PLN00116 translation elongatio 99.2 4.4E-11 9.5E-16 106.5 7.6 118 4-125 15-163 (843)
298 KOG1486 GTP-binding protein DR 99.2 2.1E-09 4.5E-14 80.8 15.2 154 7-180 61-288 (364)
299 KOG3887 Predicted small GTPase 99.2 1E-10 2.2E-15 87.2 8.2 170 9-184 28-206 (347)
300 KOG0705 GTPase-activating prot 99.2 9.4E-11 2E-15 96.3 7.1 162 6-182 28-191 (749)
301 PTZ00416 elongation factor 2; 99.1 2E-10 4.3E-15 102.3 9.4 117 5-125 16-157 (836)
302 COG1217 TypA Predicted membran 99.1 1.2E-09 2.6E-14 88.6 12.5 162 7-183 4-198 (603)
303 KOG1144 Translation initiation 99.1 3.1E-10 6.8E-15 96.2 9.4 170 7-183 474-690 (1064)
304 PRK09601 GTP-binding protein Y 99.1 4.4E-09 9.6E-14 84.5 14.9 81 9-90 3-107 (364)
305 COG0378 HypB Ni2+-binding GTPa 99.1 7.4E-10 1.6E-14 80.3 8.7 151 8-179 13-200 (202)
306 PF05049 IIGP: Interferon-indu 99.1 5.4E-10 1.2E-14 89.8 8.8 169 7-181 34-219 (376)
307 PF00350 Dynamin_N: Dynamin fa 99.1 5.7E-10 1.2E-14 80.9 7.5 63 57-122 102-168 (168)
308 PF00735 Septin: Septin; Inte 99.0 1.1E-08 2.3E-13 80.2 14.2 116 8-127 4-157 (281)
309 PRK07560 elongation factor EF- 99.0 9.1E-10 2E-14 97.0 9.0 117 6-126 18-153 (731)
310 TIGR00750 lao LAO/AO transport 99.0 5.6E-09 1.2E-13 82.8 12.5 105 55-180 126-238 (300)
311 cd01900 YchF YchF subfamily. 99.0 6.6E-09 1.4E-13 80.9 12.4 80 11-90 1-103 (274)
312 KOG0458 Elongation factor 1 al 99.0 1E-08 2.2E-13 85.1 13.4 161 4-171 173-373 (603)
313 KOG2486 Predicted GTPase [Gene 99.0 6.3E-10 1.4E-14 84.6 5.3 166 7-179 135-315 (320)
314 PRK10463 hydrogenase nickel in 99.0 1.9E-09 4.2E-14 83.9 8.1 56 113-178 231-287 (290)
315 cd01855 YqeH YqeH. YqeH is an 99.0 1.5E-09 3.3E-14 80.5 7.2 95 69-180 24-125 (190)
316 KOG0085 G protein subunit Galp 99.0 6.7E-10 1.4E-14 82.5 5.1 130 52-182 195-351 (359)
317 TIGR02836 spore_IV_A stage IV 99.0 3.3E-08 7.1E-13 80.0 14.4 154 8-176 17-233 (492)
318 PRK00098 GTPase RsgA; Reviewed 99.0 1.5E-08 3.3E-13 80.3 12.1 87 76-176 77-163 (298)
319 COG5257 GCD11 Translation init 98.9 7.9E-09 1.7E-13 80.3 9.4 170 6-185 8-207 (415)
320 COG3276 SelB Selenocysteine-sp 98.9 1.4E-08 3E-13 82.1 10.3 154 11-180 3-162 (447)
321 KOG0468 U5 snRNP-specific prot 98.9 4.1E-09 8.9E-14 88.7 7.5 118 4-125 124-262 (971)
322 smart00053 DYNc Dynamin, GTPas 98.9 1.1E-08 2.3E-13 78.2 9.1 69 56-127 125-207 (240)
323 COG0480 FusA Translation elong 98.9 1.5E-08 3.2E-13 87.9 10.5 118 5-127 7-143 (697)
324 TIGR00993 3a0901s04IAP86 chlor 98.9 2.5E-08 5.5E-13 84.9 10.5 118 7-127 117-251 (763)
325 cd01859 MJ1464 MJ1464. This f 98.8 8.7E-09 1.9E-13 73.9 6.2 93 71-180 4-96 (156)
326 PRK12289 GTPase RsgA; Reviewed 98.8 2.3E-08 4.9E-13 80.6 8.9 91 72-178 82-173 (352)
327 cd01854 YjeQ_engC YjeQ/EngC. 98.8 2.5E-08 5.5E-13 78.6 9.0 88 74-177 73-161 (287)
328 KOG0410 Predicted GTP binding 98.8 3E-09 6.5E-14 82.6 3.5 150 7-181 177-342 (410)
329 KOG0099 G protein subunit Galp 98.8 1.8E-08 4E-13 76.2 7.4 126 56-182 202-371 (379)
330 COG0012 Predicted GTPase, prob 98.8 2.7E-07 5.8E-12 73.6 14.4 83 8-90 2-108 (372)
331 KOG1143 Predicted translation 98.8 1.5E-08 3.3E-13 80.2 7.1 162 7-172 166-380 (591)
332 PF03308 ArgK: ArgK protein; 98.8 2.2E-09 4.7E-14 81.6 1.8 148 7-179 28-229 (266)
333 COG4108 PrfC Peptide chain rel 98.8 3.2E-08 6.9E-13 79.9 8.3 116 9-128 13-149 (528)
334 TIGR03597 GTPase_YqeH ribosome 98.8 1.7E-08 3.7E-13 82.0 6.6 96 66-178 50-151 (360)
335 COG0050 TufB GTPases - transla 98.8 7.8E-08 1.7E-12 74.0 9.7 166 4-182 8-203 (394)
336 COG1703 ArgK Putative periplas 98.8 7.6E-08 1.7E-12 74.4 9.6 155 7-180 50-254 (323)
337 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 3.6E-08 7.8E-13 69.5 6.5 53 10-66 85-138 (141)
338 PRK12288 GTPase RsgA; Reviewed 98.7 8.4E-08 1.8E-12 77.3 9.0 89 77-178 118-206 (347)
339 cd01858 NGP_1 NGP-1. Autoanti 98.7 9.2E-08 2E-12 68.7 7.5 90 76-179 5-94 (157)
340 COG5019 CDC3 Septin family pro 98.6 3.9E-07 8.5E-12 72.3 10.6 117 7-127 22-177 (373)
341 KOG2655 Septin family protein 98.6 1.1E-06 2.5E-11 70.1 12.3 116 8-127 21-173 (366)
342 cd04178 Nucleostemin_like Nucl 98.6 2.3E-07 5E-12 67.6 6.9 56 7-66 116-172 (172)
343 cd01858 NGP_1 NGP-1. Autoanti 98.6 2.7E-07 5.8E-12 66.3 7.2 26 7-32 101-126 (157)
344 cd01856 YlqF YlqF. Proteins o 98.6 2.8E-07 6.1E-12 67.1 7.1 57 6-66 113-170 (171)
345 KOG1487 GTP-binding protein DR 98.5 8.1E-07 1.8E-11 67.4 9.5 151 9-179 60-280 (358)
346 cd01859 MJ1464 MJ1464. This f 98.5 3.8E-07 8.3E-12 65.3 7.1 56 7-65 100-155 (156)
347 COG5258 GTPBP1 GTPase [General 98.5 2.1E-07 4.5E-12 74.2 5.1 164 5-172 114-331 (527)
348 cd01849 YlqF_related_GTPase Yl 98.5 9.4E-07 2E-11 63.3 8.0 84 81-180 1-85 (155)
349 KOG0463 GTP-binding protein GP 98.5 8.6E-07 1.9E-11 70.6 8.3 118 7-128 132-289 (641)
350 TIGR03596 GTPase_YlqF ribosome 98.5 7.4E-07 1.6E-11 70.0 7.6 57 6-66 116-173 (276)
351 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 7.1E-07 1.5E-11 62.9 6.2 77 76-167 8-84 (141)
352 cd01856 YlqF YlqF. Proteins o 98.4 1.5E-06 3.2E-11 63.3 8.0 88 74-180 14-101 (171)
353 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.4E-06 3E-11 68.8 8.1 56 7-66 120-176 (287)
354 KOG0448 Mitofusin 1 GTPase, in 98.4 6.7E-06 1.5E-10 70.0 11.3 119 6-128 107-277 (749)
355 cd01855 YqeH YqeH. YqeH is an 98.4 1E-06 2.2E-11 65.3 5.9 24 9-32 128-151 (190)
356 PF03193 DUF258: Protein of un 98.3 5.4E-07 1.2E-11 64.4 3.9 23 10-32 37-59 (161)
357 COG1618 Predicted nucleotide k 98.3 3.1E-05 6.7E-10 54.9 12.0 147 6-180 3-176 (179)
358 COG5192 BMS1 GTP-binding prote 98.3 6E-06 1.3E-10 69.1 9.6 112 6-128 67-179 (1077)
359 COG1161 Predicted GTPases [Gen 98.3 1.9E-06 4.2E-11 69.0 6.6 56 6-66 130-187 (322)
360 cd01849 YlqF_related_GTPase Yl 98.3 3E-06 6.5E-11 60.7 6.9 57 6-66 98-155 (155)
361 TIGR03596 GTPase_YlqF ribosome 98.3 4.5E-06 9.8E-11 65.5 8.3 90 73-181 15-104 (276)
362 PRK13796 GTPase YqeH; Provisio 98.3 5E-06 1.1E-10 67.8 8.7 93 68-178 58-157 (365)
363 PRK12288 GTPase RsgA; Reviewed 98.2 1.6E-06 3.4E-11 70.0 5.1 22 11-32 208-229 (347)
364 TIGR00092 GTP-binding protein 98.2 6.1E-06 1.3E-10 66.7 8.3 81 9-90 3-108 (368)
365 KOG1547 Septin CDC10 and relat 98.2 6.3E-06 1.4E-10 62.0 7.6 60 7-66 45-114 (336)
366 cd01851 GBP Guanylate-binding 98.2 1.1E-05 2.4E-10 61.4 9.1 88 6-93 5-105 (224)
367 PRK10416 signal recognition pa 98.2 1.2E-05 2.7E-10 64.1 9.3 95 54-172 195-302 (318)
368 PRK09563 rbgA GTPase YlqF; Rev 98.2 8.3E-06 1.8E-10 64.4 8.0 90 73-181 18-107 (287)
369 KOG1491 Predicted GTP-binding 98.2 1.4E-05 3E-10 63.0 8.9 84 7-90 19-125 (391)
370 PRK14974 cell division protein 98.2 3.8E-06 8.3E-11 67.4 5.9 95 55-172 222-322 (336)
371 KOG0467 Translation elongation 98.2 5.6E-06 1.2E-10 71.2 7.0 116 4-123 5-135 (887)
372 PRK01889 GTPase RsgA; Reviewed 98.1 1.5E-05 3.3E-10 64.7 8.3 85 76-176 109-193 (356)
373 TIGR03348 VI_IcmF type VI secr 98.1 1.8E-05 3.8E-10 73.6 9.7 113 11-127 114-258 (1169)
374 KOG0460 Mitochondrial translat 98.1 2.4E-05 5.3E-10 61.7 8.8 166 5-182 51-247 (449)
375 TIGR00064 ftsY signal recognit 98.1 1.5E-05 3.2E-10 62.4 7.5 95 54-172 153-260 (272)
376 PRK14722 flhF flagellar biosyn 98.1 1.5E-05 3.3E-10 64.7 7.7 119 9-127 138-296 (374)
377 cd01854 YjeQ_engC YjeQ/EngC. 98.1 4.8E-06 1E-10 65.7 4.7 24 9-32 162-185 (287)
378 KOG3859 Septins (P-loop GTPase 98.1 1.1E-05 2.3E-10 62.0 5.8 59 7-65 41-104 (406)
379 PF09547 Spore_IV_A: Stage IV 98.0 0.00056 1.2E-08 56.0 15.5 154 8-176 17-233 (492)
380 cd03112 CobW_like The function 98.0 1.5E-05 3.2E-10 57.3 6.1 65 55-124 86-158 (158)
381 PRK12289 GTPase RsgA; Reviewed 98.0 1.2E-05 2.6E-10 65.1 5.9 22 11-32 175-196 (352)
382 TIGR00157 ribosome small subun 98.0 8E-06 1.7E-10 63.0 4.6 23 10-32 122-144 (245)
383 COG1419 FlhF Flagellar GTP-bin 98.0 3.8E-05 8.3E-10 62.3 8.6 150 9-182 204-396 (407)
384 TIGR01425 SRP54_euk signal rec 98.0 4.5E-05 9.8E-10 63.0 9.2 67 55-127 182-254 (429)
385 KOG1954 Endocytosis/signaling 98.0 4.5E-05 9.6E-10 60.9 8.7 116 9-127 59-226 (532)
386 COG1162 Predicted GTPases [Gen 98.0 5.9E-06 1.3E-10 64.5 3.6 22 10-31 166-187 (301)
387 TIGR03597 GTPase_YqeH ribosome 97.9 1.4E-05 3.1E-10 65.0 5.3 24 9-32 155-178 (360)
388 KOG1534 Putative transcription 97.9 4.3E-05 9.3E-10 56.5 6.0 71 111-181 163-252 (273)
389 PRK00098 GTPase RsgA; Reviewed 97.9 2.1E-05 4.6E-10 62.4 4.9 23 10-32 166-188 (298)
390 COG1162 Predicted GTPases [Gen 97.8 0.00019 4.1E-09 56.3 9.5 93 72-177 72-164 (301)
391 KOG0466 Translation initiation 97.8 1.6E-05 3.5E-10 61.9 2.7 167 4-184 34-245 (466)
392 PRK13796 GTPase YqeH; Provisio 97.8 5.3E-05 1.1E-09 61.9 5.7 23 9-31 161-183 (365)
393 PRK14721 flhF flagellar biosyn 97.8 0.00018 4E-09 59.4 8.9 22 9-30 192-213 (420)
394 KOG4273 Uncharacterized conser 97.8 0.00091 2E-08 50.9 11.7 163 9-177 5-219 (418)
395 PRK12727 flagellar biosynthesi 97.7 0.00017 3.6E-09 61.0 7.9 22 9-30 351-372 (559)
396 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00013 2.8E-09 42.4 5.1 44 79-123 13-58 (58)
397 KOG1533 Predicted GTPase [Gene 97.7 6.8E-05 1.5E-09 56.3 4.8 118 55-175 96-248 (290)
398 KOG0465 Mitochondrial elongati 97.7 0.00013 2.7E-09 61.8 6.9 117 7-127 38-171 (721)
399 KOG1424 Predicted GTP-binding 97.7 6.2E-05 1.3E-09 62.4 4.6 55 8-66 314-369 (562)
400 KOG0447 Dynamin-like GTP bindi 97.7 0.00043 9.4E-09 58.1 9.3 70 57-129 413-496 (980)
401 PRK13695 putative NTPase; Prov 97.6 0.0014 3.1E-08 47.7 11.1 22 9-30 1-22 (174)
402 PRK00771 signal recognition pa 97.6 0.00013 2.8E-09 60.7 5.9 114 7-127 94-247 (437)
403 cd02038 FleN-like FleN is a me 97.6 0.0003 6.5E-09 49.4 6.7 108 12-126 4-111 (139)
404 PRK14723 flhF flagellar biosyn 97.6 0.00036 7.9E-09 61.5 8.3 21 10-30 187-207 (767)
405 PF02492 cobW: CobW/HypB/UreG, 97.6 0.00048 1E-08 50.5 7.7 68 56-128 85-157 (178)
406 PRK06995 flhF flagellar biosyn 97.5 0.00024 5.2E-09 59.7 6.4 21 10-30 258-278 (484)
407 PRK12723 flagellar biosynthesi 97.5 0.0012 2.6E-08 54.2 10.2 23 8-30 174-196 (388)
408 COG0563 Adk Adenylate kinase a 97.5 7.2E-05 1.6E-09 54.8 2.8 23 9-31 1-23 (178)
409 PF13207 AAA_17: AAA domain; P 97.5 9.1E-05 2E-09 50.5 3.0 22 10-31 1-22 (121)
410 COG3640 CooC CO dehydrogenase 97.5 0.00085 1.8E-08 50.6 8.1 64 56-125 134-198 (255)
411 cd03115 SRP The signal recogni 97.5 0.00093 2E-08 48.6 8.4 67 55-127 82-154 (173)
412 PRK08118 topology modulation p 97.5 0.00011 2.3E-09 53.3 3.3 22 10-31 3-24 (167)
413 TIGR00959 ffh signal recogniti 97.5 0.00062 1.3E-08 56.6 8.1 85 54-159 181-271 (428)
414 KOG0464 Elongation factor G [T 97.5 9.5E-05 2.1E-09 60.0 3.0 116 8-127 37-169 (753)
415 PRK11537 putative GTP-binding 97.4 0.00085 1.8E-08 53.8 8.3 23 9-31 5-27 (318)
416 PF03266 NTPase_1: NTPase; In 97.4 0.00024 5.1E-09 51.6 4.7 52 10-63 1-52 (168)
417 cd00009 AAA The AAA+ (ATPases 97.4 0.00069 1.5E-08 47.0 6.7 25 9-33 20-44 (151)
418 PRK07261 topology modulation p 97.4 0.00015 3.2E-09 52.9 3.3 22 10-31 2-23 (171)
419 KOG2484 GTPase [General functi 97.4 0.00017 3.8E-09 58.1 3.8 57 6-66 250-307 (435)
420 PRK10867 signal recognition pa 97.4 0.00044 9.6E-09 57.5 6.1 67 54-127 182-255 (433)
421 COG0523 Putative GTPases (G3E 97.4 0.0049 1.1E-07 49.4 11.8 76 79-172 116-193 (323)
422 PF13555 AAA_29: P-loop contai 97.3 0.00025 5.3E-09 42.2 3.1 21 10-30 25-45 (62)
423 KOG3929 Uncharacterized conser 97.3 0.00017 3.6E-09 55.1 2.8 89 5-96 42-136 (363)
424 PRK12726 flagellar biosynthesi 97.3 0.00047 1E-08 56.1 5.4 23 8-30 206-228 (407)
425 KOG2485 Conserved ATP/GTP bind 97.3 0.00054 1.2E-08 53.7 5.4 60 6-66 141-206 (335)
426 PF13671 AAA_33: AAA domain; P 97.3 0.0002 4.4E-09 50.2 2.7 21 11-31 2-22 (143)
427 KOG0469 Elongation factor 2 [T 97.3 0.00074 1.6E-08 56.2 6.0 112 9-124 20-162 (842)
428 PRK05703 flhF flagellar biosyn 97.3 0.0026 5.6E-08 53.0 9.3 103 55-181 299-414 (424)
429 cd04178 Nucleostemin_like Nucl 97.2 0.00085 1.8E-08 48.9 5.7 45 81-127 1-45 (172)
430 cd02042 ParA ParA and ParB of 97.2 0.0016 3.4E-08 43.1 6.5 82 11-104 2-84 (104)
431 cd01983 Fer4_NifH The Fer4_Nif 97.2 0.0022 4.8E-08 41.3 7.1 69 11-92 2-71 (99)
432 cd02019 NK Nucleoside/nucleoti 97.2 0.00039 8.4E-09 42.6 3.1 21 11-31 2-22 (69)
433 PF13521 AAA_28: AAA domain; P 97.2 0.00021 4.5E-09 51.5 2.2 22 10-31 1-22 (163)
434 PRK14737 gmk guanylate kinase; 97.2 0.00037 8E-09 51.5 3.5 23 9-31 5-27 (186)
435 PRK10751 molybdopterin-guanine 97.2 0.00048 1E-08 50.1 3.7 26 6-31 4-29 (173)
436 COG1116 TauB ABC-type nitrate/ 97.2 0.00035 7.6E-09 53.2 3.1 21 11-31 32-52 (248)
437 PRK05480 uridine/cytidine kina 97.2 0.00052 1.1E-08 51.6 4.0 26 6-31 4-29 (209)
438 PRK14738 gmk guanylate kinase; 97.2 0.00053 1.1E-08 51.5 4.0 26 6-31 11-36 (206)
439 TIGR00235 udk uridine kinase. 97.1 0.00054 1.2E-08 51.4 4.0 29 3-31 1-29 (207)
440 COG3523 IcmF Type VI protein s 97.1 0.00079 1.7E-08 61.9 5.2 112 11-127 128-271 (1188)
441 PRK06217 hypothetical protein; 97.1 0.00053 1.2E-08 50.4 3.3 23 9-31 2-24 (183)
442 COG1136 SalX ABC-type antimicr 97.1 0.00049 1.1E-08 52.0 3.1 21 11-31 34-54 (226)
443 PRK06731 flhF flagellar biosyn 97.1 0.0021 4.6E-08 50.2 6.6 112 9-127 76-226 (270)
444 COG1126 GlnQ ABC-type polar am 97.1 0.00054 1.2E-08 51.1 3.1 22 10-31 30-51 (240)
445 PF13238 AAA_18: AAA domain; P 97.1 0.00049 1.1E-08 47.1 2.7 21 11-31 1-21 (129)
446 PTZ00088 adenylate kinase 1; P 97.0 0.00073 1.6E-08 51.6 3.7 25 6-30 4-28 (229)
447 KOG0459 Polypeptide release fa 97.0 0.0011 2.4E-08 53.7 4.8 164 4-172 75-278 (501)
448 COG0194 Gmk Guanylate kinase [ 97.0 0.00037 8.1E-09 50.7 2.0 24 9-32 5-28 (191)
449 PRK03839 putative kinase; Prov 97.0 0.00064 1.4E-08 49.8 3.3 22 10-31 2-23 (180)
450 cd00071 GMPK Guanosine monopho 97.0 0.00065 1.4E-08 47.6 3.1 21 11-31 2-22 (137)
451 PRK14530 adenylate kinase; Pro 97.0 0.00065 1.4E-08 51.3 3.3 21 10-30 5-25 (215)
452 PRK10078 ribose 1,5-bisphospho 97.0 0.00066 1.4E-08 50.1 3.1 22 10-31 4-25 (186)
453 PLN02674 adenylate kinase 97.0 0.00066 1.4E-08 52.1 3.1 27 4-30 27-53 (244)
454 PF00004 AAA: ATPase family as 97.0 0.00073 1.6E-08 46.4 3.0 22 11-32 1-22 (132)
455 TIGR02322 phosphon_PhnN phosph 97.0 0.0007 1.5E-08 49.5 3.0 22 10-31 3-24 (179)
456 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00075 1.6E-08 49.6 3.1 22 9-30 4-25 (188)
457 smart00382 AAA ATPases associa 96.9 0.0011 2.4E-08 45.5 3.8 26 9-34 3-28 (148)
458 PRK08233 hypothetical protein; 96.9 0.001 2.2E-08 48.6 3.6 24 8-31 3-26 (182)
459 COG1117 PstB ABC-type phosphat 96.9 0.0021 4.6E-08 48.0 5.2 20 11-30 36-55 (253)
460 COG1936 Predicted nucleotide k 96.9 0.00079 1.7E-08 48.4 2.9 21 9-29 1-21 (180)
461 PRK07429 phosphoribulokinase; 96.9 0.0013 2.7E-08 52.9 4.2 30 1-30 1-30 (327)
462 PF00005 ABC_tran: ABC transpo 96.9 0.00082 1.8E-08 46.8 2.8 23 10-32 13-35 (137)
463 TIGR03263 guanyl_kin guanylate 96.9 0.00093 2E-08 48.9 3.2 22 10-31 3-24 (180)
464 PRK14532 adenylate kinase; Pro 96.9 0.00095 2.1E-08 49.2 3.2 21 10-30 2-22 (188)
465 PF04665 Pox_A32: Poxvirus A32 96.9 0.001 2.2E-08 50.9 3.3 26 6-31 11-36 (241)
466 PF03205 MobB: Molybdopterin g 96.9 0.00089 1.9E-08 47.1 2.8 23 10-32 2-24 (140)
467 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00096 2.1E-08 44.4 2.8 20 10-29 17-36 (107)
468 TIGR02475 CobW cobalamin biosy 96.9 0.022 4.7E-07 46.2 11.1 21 11-31 7-27 (341)
469 cd03111 CpaE_like This protein 96.9 0.005 1.1E-07 41.0 6.2 99 14-121 6-106 (106)
470 PRK13949 shikimate kinase; Pro 96.9 0.0011 2.5E-08 48.1 3.3 21 10-30 3-23 (169)
471 PRK14531 adenylate kinase; Pro 96.8 0.0011 2.5E-08 48.7 3.3 23 9-31 3-25 (183)
472 cd01428 ADK Adenylate kinase ( 96.8 0.00093 2E-08 49.4 2.9 22 10-31 1-22 (194)
473 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.0011 2.5E-08 48.5 3.1 21 11-31 2-22 (183)
474 PRK02496 adk adenylate kinase; 96.8 0.0014 3E-08 48.2 3.5 22 9-30 2-23 (184)
475 cd02023 UMPK Uridine monophosp 96.8 0.0011 2.4E-08 49.3 3.0 21 11-31 2-22 (198)
476 cd03238 ABC_UvrA The excision 96.8 0.0013 2.7E-08 48.2 3.2 20 10-29 23-42 (176)
477 COG3839 MalK ABC-type sugar tr 96.8 0.0012 2.5E-08 53.0 3.1 20 11-30 32-51 (338)
478 TIGR01351 adk adenylate kinase 96.8 0.0011 2.4E-08 49.8 2.9 21 10-30 1-21 (210)
479 COG1120 FepC ABC-type cobalami 96.8 0.0012 2.6E-08 50.9 3.1 20 11-30 31-50 (258)
480 PF11111 CENP-M: Centromere pr 96.8 0.12 2.6E-06 37.4 13.7 142 4-179 11-152 (176)
481 PLN02200 adenylate kinase fami 96.8 0.0018 3.9E-08 49.6 4.0 24 7-30 42-65 (234)
482 PF07728 AAA_5: AAA domain (dy 96.8 0.0012 2.5E-08 46.2 2.7 21 11-31 2-22 (139)
483 COG3840 ThiQ ABC-type thiamine 96.8 0.0014 3.1E-08 47.7 3.1 23 10-32 27-49 (231)
484 PRK00625 shikimate kinase; Pro 96.7 0.0015 3.2E-08 47.7 3.2 22 10-31 2-23 (173)
485 PHA00729 NTP-binding motif con 96.7 0.002 4.3E-08 48.8 3.9 25 7-31 16-40 (226)
486 KOG3347 Predicted nucleotide k 96.7 0.0012 2.5E-08 46.4 2.4 25 6-30 5-29 (176)
487 COG3638 ABC-type phosphate/pho 96.7 0.0015 3.2E-08 49.4 3.0 21 10-30 32-52 (258)
488 PRK14527 adenylate kinase; Pro 96.7 0.0021 4.4E-08 47.6 3.7 24 7-30 5-28 (191)
489 PRK00300 gmk guanylate kinase; 96.7 0.0015 3.3E-08 48.8 3.1 23 9-31 6-28 (205)
490 KOG2423 Nucleolar GTPase [Gene 96.7 0.0021 4.6E-08 52.1 3.8 81 3-95 302-390 (572)
491 PRK01889 GTPase RsgA; Reviewed 96.7 0.0017 3.7E-08 52.9 3.4 23 10-32 197-219 (356)
492 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0018 3.8E-08 47.5 3.1 23 10-32 27-49 (177)
493 PRK14529 adenylate kinase; Pro 96.6 0.0019 4E-08 49.0 3.2 22 9-30 1-22 (223)
494 cd02025 PanK Pantothenate kina 96.6 0.0016 3.4E-08 49.4 2.9 21 11-31 2-22 (220)
495 COG4525 TauB ABC-type taurine 96.6 0.0018 3.9E-08 47.8 2.9 21 10-30 33-53 (259)
496 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.002 4.4E-08 48.6 3.3 22 10-31 32-53 (218)
497 cd01130 VirB11-like_ATPase Typ 96.6 0.0021 4.5E-08 47.4 3.3 23 9-31 26-48 (186)
498 cd03225 ABC_cobalt_CbiO_domain 96.6 0.0022 4.7E-08 48.2 3.4 22 10-31 29-50 (211)
499 PF13401 AAA_22: AAA domain; P 96.6 0.0018 3.8E-08 44.6 2.6 22 10-31 6-27 (131)
500 TIGR00960 3a0501s02 Type II (G 96.6 0.0022 4.7E-08 48.4 3.3 22 10-31 31-52 (216)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-41 Score=240.07 Aligned_cols=170 Identities=34% Similarity=0.662 Sum_probs=158.3
Q ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCc
Q 028362 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80 (210)
Q Consensus 2 ~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 80 (210)
+..-...+||+|+|++|||||+|+.||..+.|.+.+..|++.++.. ++.++++.+++++|||+||++|+.+...+|++|
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 3455678999999999999999999999999999999999999865 578899999999999999999999999999999
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362 81 DVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (210)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
+++|+|||+++.+||.++ ..|++.+..+. +++|.++||||+|+..... +..++++.|+.+++..++++
T Consensus 83 hGii~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~E 151 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFLE 151 (205)
T ss_pred CeEEEEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCcceee
Confidence 999999999999999998 89999999988 6789999999999998887 99999999999999855999
Q ss_pred eccCCCCCHHHHHHHHHHHHhCC
Q 028362 160 CSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
+||+++.|++++|..|...+..+
T Consensus 152 TSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 152 TSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred cccCCccCHHHHHHHHHHHHHHh
Confidence 99999999999999999888654
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-40 Score=234.05 Aligned_cols=167 Identities=32% Similarity=0.620 Sum_probs=155.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
...+|++|||+.+||||||+-||..+.|.+...||++.-| +..+.+++..++|.||||+||++|+++-+.|+++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 5679999999999999999999999999998899997666 667888999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
+|||+++.+||..+ +.|...+.+.. +++-+.|||||+|+...+. +..+++..++...+. .|+++||+
T Consensus 83 vvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------V~~~ea~~yAe~~gl-l~~ETSAK 150 (200)
T KOG0092|consen 83 VVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------VEFEEAQAYAESQGL-LFFETSAK 150 (200)
T ss_pred EEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------ccHHHHHHHHHhcCC-EEEEEecc
Confidence 99999999999998 89999999887 6788889999999988665 999999999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHhCCcc
Q 028362 164 TQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~~~ 184 (210)
++.|++++|..|.+.+.....
T Consensus 151 Tg~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 151 TGENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred cccCHHHHHHHHHHhccCccc
Confidence 999999999999999987643
No 3
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=6.3e-39 Score=238.32 Aligned_cols=188 Identities=55% Similarity=0.976 Sum_probs=157.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
+.+||+++|++|||||||+.+|..+.|.+.+.||.+..+...+.+++..+.+.+||++|+++|+.+++.+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 45899999999999999999999999999999999888776677899999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
||++++.+|+++...|...+....+++|++|||||.|+.+....... ......+..+++..+++..+..+++++||++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 99999999999855798877766678999999999999654211000 0112236778999999999866899999999
Q ss_pred CCCHHHHHHHHHHHHhCCccchhhhhhcCCCeEEE
Q 028362 165 QQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN 199 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 199 (210)
|.|++++|.++++.+..+.. .+++++|.++
T Consensus 162 g~~v~e~f~~l~~~~~~~~~-----~~~~~~c~~~ 191 (191)
T cd01875 162 QDGVKEVFAEAVRAVLNPTP-----IKDTKSCVLL 191 (191)
T ss_pred CCCHHHHHHHHHHHHhcccc-----ccCCCCceeC
Confidence 99999999999999977532 1233458764
No 4
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.8e-38 Score=231.32 Aligned_cols=174 Identities=89% Similarity=1.414 Sum_probs=153.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|++|||||+|+.++..+.|...+.||.+..+...+.+++..+.+.+||++|+++|+.++..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 79999999999999999999999999999999988887777889999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH
Q 028362 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 168 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (210)
+++++||+++...|+..+....+++|++|||||+|+.+.......+.....++.+++.++++.++..++++|||+++.||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV 161 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV 161 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence 99999999975689998887767899999999999965432112233344588999999999998767999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 028362 169 KAVFDAAIKVVIKP 182 (210)
Q Consensus 169 ~~~~~~i~~~~~~~ 182 (210)
+++|+.+++.+..+
T Consensus 162 ~~~F~~~~~~~~~~ 175 (176)
T cd04133 162 KAVFDAAIKVVLQP 175 (176)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987543
No 5
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-38 Score=229.51 Aligned_cols=170 Identities=31% Similarity=0.621 Sum_probs=158.4
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
+....+||+++|+++||||+|+.+|..+.|...+..|.+.+|.. ++..++..+.+++||++||++|+.+...|++.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 55678999999999999999999999999999999999999865 57889999999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+++|||+++..||+++ ..|+..+..+. +++|++|||||+|+...+. +..+.++++|.++|+ +|+++|
T Consensus 88 i~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------V~~e~ge~lA~e~G~-~F~EtS 155 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------VSKERGEALAREYGI-KFFETS 155 (207)
T ss_pred eEEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------ccHHHHHHHHHHhCC-eEEEcc
Confidence 9999999999999998 67999999988 5999999999999988766 999999999999998 999999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCccc
Q 028362 162 SKTQQNVKAVFDAAIKVVIKPPQK 185 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~~~~ 185 (210)
|++|.||+++|..+++.+..+.+.
T Consensus 156 Ak~~~NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 156 AKTNFNIEEAFLSLARDILQKLED 179 (207)
T ss_pred ccCCCCHHHHHHHHHHHHHhhcch
Confidence 999999999999999999865443
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-38 Score=225.48 Aligned_cols=167 Identities=35% Similarity=0.554 Sum_probs=154.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
.+.+|+++||+.+||||+||+||..+.|+..|.+|++.+| ..++.+.+.++.|++|||+|||+|+.+.+.|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 4669999999999999999999999999999999999888 567889999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-C-CCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-P-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
+|||+++..||++. ..|++-+.... + ++-++|||||.||.+.++ ++.+++...++++++ .|+++||
T Consensus 100 iVyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~etsa 167 (221)
T KOG0094|consen 100 IVYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETSA 167 (221)
T ss_pred EEEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEecc
Confidence 99999999999998 89999887766 4 467789999999998887 999999999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCcc
Q 028362 163 KTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
+.|.|+.++|..+...+.....
T Consensus 168 k~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 168 KAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred cCCCCHHHHHHHHHHhccCccc
Confidence 9999999999999888877644
No 7
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=9.1e-38 Score=229.91 Aligned_cols=177 Identities=38% Similarity=0.712 Sum_probs=153.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
.+..+||+++|++|||||||+++|..+.|...+.||.+..+...+.+++..+.+.+||++|+++|..+++.+++++|++|
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 35679999999999999999999999999999999998888777888999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
+|||++++.+|+++...|+..+....++.|++|||||+|+......... ......++.+++++++++++..+|++|||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 9999999999999767999999887788999999999999642110000 00122488999999999999668999999
Q ss_pred CCCCC-HHHHHHHHHHHHhC
Q 028362 163 KTQQN-VKAVFDAAIKVVIK 181 (210)
Q Consensus 163 ~~~~~-i~~~~~~i~~~~~~ 181 (210)
+++.| |+++|..+++.+..
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999986543
No 8
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.5e-37 Score=229.88 Aligned_cols=165 Identities=27% Similarity=0.513 Sum_probs=148.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
...+||+++|+.|||||||+.+|..+.+...+.|+.+..+. ..+.+++..+.+.+||++|+++|+.++..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999988888888776664 34677889999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
+|||++++++|+++ ..|++.+....++.|++|||||.|+..... +..++++.+++..+. +++++||++
T Consensus 84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v~~~~~~~~a~~~~~-~~~e~SAk~ 151 (189)
T cd04121 84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGM-TFFEVSPLC 151 (189)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------CCHHHHHHHHHHcCC-EEEEecCCC
Confidence 99999999999998 799999987778999999999999976544 788999999999886 899999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028362 165 QQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~~~ 182 (210)
|.|++++|+++++.+...
T Consensus 152 g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 152 NFNITESFTELARIVLMR 169 (189)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999988753
No 9
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.8e-38 Score=221.73 Aligned_cols=175 Identities=31% Similarity=0.560 Sum_probs=156.8
Q ss_pred CCC-CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCccccc
Q 028362 1 MAS-SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 78 (210)
Q Consensus 1 m~~-~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 78 (210)
|++ ..+..+||+++|++|||||+|+++|++.+|...+..|++.+| .+.+.++++.+.++||||+||++|+++...+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 666 335779999999999999999999999999999999998877 667889999999999999999999999999999
Q ss_pred CccEEEEEEECCChhHHHHHHHHHHHHHhccC-C----CCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-P----GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (210)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~----~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
++|.+++|||++++.||+++ ..|...+-... + .-|+||+|||+|+.... ...++...++.||...+
T Consensus 81 gaDcCvlvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--------~r~VS~~~Aq~WC~s~g 151 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--------SRQVSEKKAQTWCKSKG 151 (210)
T ss_pred CCceEEEEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--------cceeeHHHHHHHHHhcC
Confidence 99999999999999999998 89998877654 2 47999999999997631 12389999999999999
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
..||+++|||+..|++++|..+.+.++....
T Consensus 152 nipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 152 NIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred CceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 8899999999999999999999998887653
No 10
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.6e-37 Score=225.66 Aligned_cols=172 Identities=38% Similarity=0.719 Sum_probs=149.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|++|||||||+++|..+.|...+.||.+..+...+.+++..+.+.+||++|++.|..+++.++++++++|+|||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd 81 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD 81 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence 69999999999999999999999999999999988887778889999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
+++++||+++...|+..+....++.|++|||||+|+.+...... .+....++..+++.+++++++..+|+++||++|+
T Consensus 82 it~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~ 161 (178)
T cd04131 82 ISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSE 161 (178)
T ss_pred CCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCC
Confidence 99999999975789999988778999999999999964211000 0011234888999999999997689999999999
Q ss_pred C-HHHHHHHHHHHHh
Q 028362 167 N-VKAVFDAAIKVVI 180 (210)
Q Consensus 167 ~-i~~~~~~i~~~~~ 180 (210)
| ++++|..+++...
T Consensus 162 ~~v~~~F~~~~~~~~ 176 (178)
T cd04131 162 KSVRDIFHVATMACL 176 (178)
T ss_pred cCHHHHHHHHHHHHh
Confidence 5 9999999998654
No 11
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-38 Score=220.38 Aligned_cols=169 Identities=30% Similarity=0.574 Sum_probs=157.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
+....+|++++|+.|||||+|+.+|....|.+.+..|.+.+|.. .+.++++.+++++|||+||+.|++....|++++.+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 44567999999999999999999999999999999999999855 58899999999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+|+|||++.+++|..+ ..|+.-+.++. +++.++|+|||+|+...+. ++.++++.||++++. .+.++|
T Consensus 82 alLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaFA~ehgL-ifmETS 149 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAFAREHGL-IFMETS 149 (216)
T ss_pred eEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHHHHHcCc-eeehhh
Confidence 9999999999999998 89999988886 8999999999999998876 999999999999997 888999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCcc
Q 028362 162 SKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
|+++.|++|+|......+.+..+
T Consensus 150 akt~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 150 AKTAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999988876544
No 12
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.2e-37 Score=231.97 Aligned_cols=177 Identities=36% Similarity=0.675 Sum_probs=153.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
...+||+++|++|||||+|+++|..+.|...+.||.+..+...+.+++..+.+.+|||+|+++|+.+++.++++++++|+
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 35689999999999999999999999999999999988887778889999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
|||++++.+|+++...|+..+....++.|++|||||+|+......... ......+..++++++++++++.+|++|||+
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAk 170 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAF 170 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCC
Confidence 999999999998657899999877778999999999998643110000 001234888999999999997679999999
Q ss_pred CCC-CHHHHHHHHHHHHhCC
Q 028362 164 TQQ-NVKAVFDAAIKVVIKP 182 (210)
Q Consensus 164 ~~~-~i~~~~~~i~~~~~~~ 182 (210)
+|. |++++|..++..+.+.
T Consensus 171 tg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 171 TSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred cCCcCHHHHHHHHHHHHHHh
Confidence 997 8999999999887654
No 13
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.3e-37 Score=213.10 Aligned_cols=166 Identities=32% Similarity=0.642 Sum_probs=154.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
..+||+++|++|||||+|+-+|..+.|++....|++.+|.. .+.+++..+++.+|||+||++|+.+.+.|++.|.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 55999999999999999999999999999988889998866 47899999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
|||++.+++|..+ ..|++.+..++ +++..++|+||+|...++. ++.+++..|+++++. .|+++||+
T Consensus 90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SAk 157 (209)
T KOG0080|consen 90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSAK 157 (209)
T ss_pred EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcchh
Confidence 9999999999998 89999999987 5777889999999987776 899999999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHhCCcc
Q 028362 164 TQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~~~ 184 (210)
+.+|++.+|+.++.+++.-+.
T Consensus 158 t~~~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 158 TRENVQCCFEELVEKIIETPS 178 (209)
T ss_pred hhccHHHHHHHHHHHHhcCcc
Confidence 999999999999999987654
No 14
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=9.7e-37 Score=230.14 Aligned_cols=174 Identities=39% Similarity=0.746 Sum_probs=152.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+|+|++|||||+|+++|..+.|...+.||....+...+.+++..+.|.+||++|++.|..+++.+++++|++|+|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999999999999988887778889999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
++++++|+++...|...+....++.|++|||||+|+......... .....+++.+++..++++.++.+|++|||+++.
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~ 161 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE 161 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 999999999877898888777789999999999999654221111 112345788999999999997799999999988
Q ss_pred C-HHHHHHHHHHHHhCC
Q 028362 167 N-VKAVFDAAIKVVIKP 182 (210)
Q Consensus 167 ~-i~~~~~~i~~~~~~~ 182 (210)
+ ++++|..++.....+
T Consensus 162 ~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 162 RSVRDVFHVATVASLGR 178 (222)
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 5 999999999977664
No 15
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.9e-36 Score=223.75 Aligned_cols=187 Identities=40% Similarity=0.687 Sum_probs=155.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
.||+++|++|||||||+++|..+.+...+.||....+...+.+++..+.+.+||++|++.|..++..++++++++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 38999999999999999999999998888899888777667778888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
++++++++.+...|+..+....++.|+++|+||+|+........ .......+..+++..++...+..+++++||+++.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 99999999885579888887667899999999999976532110 0111123567788888888886689999999999
Q ss_pred CHHHHHHHHHHHHhCCccchhhhhhcCCCeEEE
Q 028362 167 NVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN 199 (210)
Q Consensus 167 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 199 (210)
|++++|.++++.+..... ..+.+++|.+|
T Consensus 161 ~v~e~f~~l~~~~~~~~~----~~~~~~~~~~~ 189 (189)
T cd04134 161 GVNEAFTEAARVALNVRP----PHPHSSACTIA 189 (189)
T ss_pred CHHHHHHHHHHHHhcccc----cCcCCCcceeC
Confidence 999999999999875433 44566677664
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.1e-36 Score=227.29 Aligned_cols=163 Identities=28% Similarity=0.572 Sum_probs=145.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+.|+++|++|||||||+++|..+.|...+.+|.+..+. ..+.+++..+.+.+||++|+++|+.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999999888899876664 45778899999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
|++++++|+++ ..|+..+.... .++|+++||||+|+...+. +..+++.+++.+.....+++|||++|.
T Consensus 81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~~~~etSAktg~ 149 (202)
T cd04120 81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGMRFCEASAKDNF 149 (202)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 99999999998 78999887665 6899999999999976544 778888999988633489999999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 028362 167 NVKAVFDAAIKVVIKP 182 (210)
Q Consensus 167 ~i~~~~~~i~~~~~~~ 182 (210)
||+++|.++++.+.+.
T Consensus 150 gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 150 NVDEIFLKLVDDILKK 165 (202)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988654
No 17
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=3e-36 Score=220.93 Aligned_cols=172 Identities=54% Similarity=0.970 Sum_probs=148.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
.+||+++|++|||||||+++|..+.|...+.||.+..+...+.+++..+.+.+||++|+++|..++..++++++++|+||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 47999999999999999999999999889999998888767778899999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|++++++++++...|+..+....+++|++||+||+|+......... ......+..+++.+++++.+..+++++||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 9999999999855699888876678999999999998654221110 11223478889999999888668999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028362 166 QNVKAVFDAAIKVV 179 (210)
Q Consensus 166 ~~i~~~~~~i~~~~ 179 (210)
.|++++|+.++..+
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998754
No 18
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.9e-36 Score=223.39 Aligned_cols=185 Identities=50% Similarity=0.882 Sum_probs=157.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEEC-CEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||+++|.++.+...+.|+....+...+... +..+.+.+||++|+++|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888899887776666665 77899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN 167 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (210)
|++++++++++...|+..+....+++|+++|+||+|+..... ....+..+++.+++..++..+++++||+++.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN------LDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 999999999986678887776667899999999999965421 11236778899999998876899999999999
Q ss_pred HHHHHHHHHHHHhCCccc-hhhhhhcCCCeEEE
Q 028362 168 VKAVFDAAIKVVIKPPQK-QKEKKKKQRGCLLN 199 (210)
Q Consensus 168 i~~~~~~i~~~~~~~~~~-~~~~~~~~~~c~~~ 199 (210)
++++|.++++.+.....+ .....+++.+|.+|
T Consensus 155 v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 155 VEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 999999999999876554 33455667777764
No 19
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=4e-36 Score=219.74 Aligned_cols=164 Identities=25% Similarity=0.490 Sum_probs=147.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
.+||+++|.+|||||||++++..+.+...+.|+.+..+...+.+++..+.+.+||++|+++|+.++..+++.++++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 58999999999999999999999999888899998777777888999999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|++++.++..+ ..|...+.... +++|+++|+||+|+..... +..+++..+++..+. +++++||+++
T Consensus 82 d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~~ 149 (172)
T cd04141 82 SVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAALR 149 (172)
T ss_pred ECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCCC
Confidence 99999999998 67877776543 5899999999999976544 778889999988886 8999999999
Q ss_pred CCHHHHHHHHHHHHhCCc
Q 028362 166 QNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 166 ~~i~~~~~~i~~~~~~~~ 183 (210)
.||+++|+++++.+.+..
T Consensus 150 ~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 150 HYIDDAFHGLVREIRRKE 167 (172)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999887643
No 20
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=8.2e-36 Score=221.34 Aligned_cols=181 Identities=34% Similarity=0.565 Sum_probs=153.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
+..+||+++|++|||||||++++..+.+...+.||.+..+...+.+++..+.+.+||++|+++|..++..++++++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45699999999999999999999999998888898888777778889999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
|||++++++++++ ..|...+.... +++|+++|+||+|+..... +..+++..++..++. +++++||+
T Consensus 83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak 150 (189)
T PTZ00369 83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAK 150 (189)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCC
Confidence 9999999999998 67877766543 5889999999999965443 677778888888875 89999999
Q ss_pred CCCCHHHHHHHHHHHHhCCccc---hhhhhhcCCCeEE
Q 028362 164 TQQNVKAVFDAAIKVVIKPPQK---QKEKKKKQRGCLL 198 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~~~~---~~~~~~~~~~c~~ 198 (210)
++.|++++|.++++.+.+.... ..+++++++-|++
T Consensus 151 ~~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (189)
T PTZ00369 151 QRVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLI 188 (189)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeee
Confidence 9999999999999888765322 2244445555654
No 21
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=3.6e-36 Score=223.44 Aligned_cols=178 Identities=36% Similarity=0.617 Sum_probs=149.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (210)
||+++|.+|||||||+++|..+.+...+.|+.+..+.....+++..+.+.+||++|+++|..++..+++++|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999999988888888777766677888889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhccC----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 90 VSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
+++++++.+ ..|+..+.... ++.|+++|+||+|+..... +..+++..++..++. +++++||+++
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~~ 148 (190)
T cd04144 81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRLGC-EFIEASAKTN 148 (190)
T ss_pred CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 999999997 67877765432 4789999999999976543 677778888888886 8999999999
Q ss_pred CCHHHHHHHHHHHHhCCccch--------hhhhhcCCCeEEE
Q 028362 166 QNVKAVFDAAIKVVIKPPQKQ--------KEKKKKQRGCLLN 199 (210)
Q Consensus 166 ~~i~~~~~~i~~~~~~~~~~~--------~~~~~~~~~c~~~ 199 (210)
.|++++|+++++.+....+.. ....+++++|++|
T Consensus 149 ~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 149 VNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 999999999999886543321 1334455566653
No 22
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2e-35 Score=216.40 Aligned_cols=171 Identities=63% Similarity=1.077 Sum_probs=147.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
.+||+++|++|||||||+.++..+.|...+.|+....+...+.+++..+.+.+||++|++.|..++..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 37999999999999999999999999989999988777767778899999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|++++++++++...|+..+....++.|+++|+||+|+.+...... .......+..+++..++++++..+++++||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 999999999985679888877667899999999999965321000 011223478999999999998668999999999
Q ss_pred CCHHHHHHHHHHH
Q 028362 166 QNVKAVFDAAIKV 178 (210)
Q Consensus 166 ~~i~~~~~~i~~~ 178 (210)
.|++++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 23
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.6e-37 Score=207.57 Aligned_cols=170 Identities=33% Similarity=0.596 Sum_probs=157.7
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 79 (210)
|+-...+.++.+|+|++|||||+|+-+|..+.|+..|..|++.++.. ++.++|..++++|||++|+++|+.+...+++.
T Consensus 1 mar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrg 80 (198)
T KOG0079|consen 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRG 80 (198)
T ss_pred CcccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccC
Confidence 44455567899999999999999999999999999999999988865 57889999999999999999999999999999
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
.+++++|||+++.+||.+. ..|++.++..++.+|-++||||+|.++.+. +..+++..|+...++ .+|+
T Consensus 81 thgv~vVYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FE 148 (198)
T KOG0079|consen 81 THGVIVVYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFE 148 (198)
T ss_pred CceEEEEEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hhee
Confidence 9999999999999999998 899999999999999999999999998876 899999999999998 8899
Q ss_pred eccCCCCCHHHHHHHHHHHHhCC
Q 028362 160 CSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
+||+++.|++.+|.-|.+++...
T Consensus 149 TSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 149 TSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred hhhhhcccchHHHHHHHHHHHHH
Confidence 99999999999999998877653
No 24
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-35 Score=212.38 Aligned_cols=167 Identities=32% Similarity=0.580 Sum_probs=155.0
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
.....+||+++|+++||||-|+-||..+.|.....+|++..+ +..+.++++.++.+||||+||++|+.+...|++.+.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 345679999999999999999999999999999999999888 4568899999999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+++|||++.+.+|+++ ..|+..+..+. ++++++|||||+||..-+. +..++++.+++..+. .|+++|
T Consensus 90 AllVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------V~te~~k~~Ae~~~l-~f~EtS 157 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------VPTEDGKAFAEKEGL-FFLETS 157 (222)
T ss_pred eEEEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------cchhhhHhHHHhcCc-eEEEec
Confidence 9999999999999987 89999999998 8999999999999987655 899999999999887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCC
Q 028362 162 SKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~ 182 (210)
|.+..|++++|..++..+.+.
T Consensus 158 Al~~tNVe~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 158 ALDATNVEKAFERVLTEIYKI 178 (222)
T ss_pred ccccccHHHHHHHHHHHHHHH
Confidence 999999999999998887654
No 25
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.6e-34 Score=216.42 Aligned_cols=164 Identities=27% Similarity=0.465 Sum_probs=144.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEEC-CEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
+||+++|++|||||||+++|..+.+...+.||.+.++.. .+.++ +..+.+.+||++|++.|+.++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988889998876643 45566 7889999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhcc-----CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 87 FSLVSRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
||++++++++.+ ..|+..+... ..++|++||+||+|+..... +..+++.++++..+..+++++|
T Consensus 81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~S 149 (201)
T cd04107 81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFETS 149 (201)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEEe
Confidence 999999999998 7888776543 25789999999999975433 6788999999999866899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCc
Q 028362 162 SKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~~ 183 (210)
|+++.|++++|+++++.+....
T Consensus 150 ak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 150 AKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999887654
No 26
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.8e-34 Score=209.86 Aligned_cols=162 Identities=30% Similarity=0.612 Sum_probs=143.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
.+||+++|++|||||||+++|..+.+...+.++.+.++. ..+.+++..+.+.+||+||++++...+..++++++++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 479999999999999999999999998888888776664 3466788899999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
||++++++++.+ ..|+..+.... ++.|+++|+||+|+..... +..+++..++...+. +++++||+++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~ 149 (166)
T cd04122 82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTG 149 (166)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999998 78888776654 6799999999999976654 678889999988876 8999999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 028362 166 QNVKAVFDAAIKVVIK 181 (210)
Q Consensus 166 ~~i~~~~~~i~~~~~~ 181 (210)
.|++++|.+++..+.+
T Consensus 150 ~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 150 ENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999988754
No 27
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=2.8e-34 Score=214.70 Aligned_cols=165 Identities=32% Similarity=0.581 Sum_probs=146.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
+..+||+++|++|||||||+++|.++.+...+.||.+.++. ..+.+++..+.+.+||+||++.++.++..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35799999999999999999999999998888888876654 35666788899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
+|||++++++++.+ ..|+..+....+..|+++|+||+|+..... +..+++..++...+. +++++||++
T Consensus 84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~ 151 (199)
T cd04110 84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------VETEDAYKFAGQMGI-SLFETSAKE 151 (199)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEECCC
Confidence 99999999999998 789988887778899999999999976543 677888888888885 899999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028362 165 QQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~~~ 182 (210)
+.||+++|+++.+.+...
T Consensus 152 ~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 152 NINVEEMFNCITELVLRA 169 (199)
T ss_pred CcCHHHHHHHHHHHHHHh
Confidence 999999999999988753
No 28
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=4.3e-34 Score=209.23 Aligned_cols=171 Identities=60% Similarity=1.037 Sum_probs=148.2
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECC
Q 028362 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV 90 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (210)
|+++|++|||||||+++|..+.+...+.|+....+...+.+++..+.+.+||++|++.|..++..+++++|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999999888889888887777788899999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH
Q 028362 91 SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 168 (210)
Q Consensus 91 ~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (210)
++++++++...|+..+....+++|+++|+||+|+........ .+.....+..+++..+++..+..+++++||+++.|+
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 999999986679998887778999999999999976322110 112223477888999999998778999999999999
Q ss_pred HHHHHHHHHHHhC
Q 028362 169 KAVFDAAIKVVIK 181 (210)
Q Consensus 169 ~~~~~~i~~~~~~ 181 (210)
+++|+.+++.+.+
T Consensus 161 ~~lf~~l~~~~~~ 173 (174)
T smart00174 161 REVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988754
No 29
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.4e-34 Score=208.27 Aligned_cols=159 Identities=30% Similarity=0.578 Sum_probs=140.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|++|||||||++++..+.+...+.||....+...+.+++..+.+.+||+||+++|..++..++++++++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999988888888876666677788999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
++++++++++ ..|...+.... +++|+++|+||+|+..... +..+++..+++.++ .+++++||+++.
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (163)
T cd04136 82 ITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWG-CPFYETSAKSKI 149 (163)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 9999999987 67877776543 5799999999999976543 66777888888888 489999999999
Q ss_pred CHHHHHHHHHHHH
Q 028362 167 NVKAVFDAAIKVV 179 (210)
Q Consensus 167 ~i~~~~~~i~~~~ 179 (210)
|++++|+++++.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998765
No 30
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.9e-34 Score=208.29 Aligned_cols=161 Identities=29% Similarity=0.552 Sum_probs=141.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
++||+++|++|||||||++++..+.+...+.||....+...+.+++..+.+.+||+||+++|..++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 47999999999999999999999988888888888777777888899999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|++++++++++ ..|...+.... ++.|+++|+||+|+..... +..+++..+++.++. +++++||+++
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (164)
T cd04175 81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAK 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCC
Confidence 99999999998 67777665432 6899999999999976543 566777888888875 8999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 028362 166 QNVKAVFDAAIKVVI 180 (210)
Q Consensus 166 ~~i~~~~~~i~~~~~ 180 (210)
.|++++|.++++.+.
T Consensus 149 ~~v~~~~~~l~~~l~ 163 (164)
T cd04175 149 INVNEIFYDLVRQIN 163 (164)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998764
No 31
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=100.00 E-value=5.1e-35 Score=212.21 Aligned_cols=179 Identities=64% Similarity=1.095 Sum_probs=164.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEEC-CEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
...+|++|+|+.++|||+|+-.+..+.|+..+.||..++|...+.++ ++.+.+.+|||+||++|+++++..+..+|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 45799999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
+||++.+++|++++..+|+..+..++++.|+|+||+|.|+..+..... .+....+++.+++..++++.|+..|+++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 999999999999999999999999999999999999999985432211 233566799999999999999989999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCcc
Q 028362 163 KTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
++..|+.++|+..+.......+
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999988765
No 32
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.4e-33 Score=213.59 Aligned_cols=163 Identities=27% Similarity=0.443 Sum_probs=142.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
...+||+++|++|||||||++++..+.+...+.||.+.++. ..+..++..+.+.+||++|+++|..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 57799999999999999999999999998888999876653 45666778899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
+|||+++++++..+ ..|+..+....+++|++|||||+|+.... +..+++ .+++..+. +++++||++
T Consensus 91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~ 156 (219)
T PLN03071 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS 156 (219)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence 99999999999998 78999888777789999999999996432 334444 66676665 899999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028362 165 QQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~~~ 182 (210)
+.|++++|.++++.+...
T Consensus 157 ~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 157 NYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 999999999999988754
No 33
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1e-33 Score=206.08 Aligned_cols=163 Identities=31% Similarity=0.625 Sum_probs=144.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
..+||+++|++|||||||++++..+.+...+.|+.+..+. ..+..++..+.+.+||++|++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999999999988898876654 356678888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
|||+++++++..+ ..|+..+.... .+.|+++|+||+|+..... +..+++..++...+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T cd01867 82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKA 149 (167)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 68998887765 5799999999999976543 677788888888876 899999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028362 165 QQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~~ 181 (210)
+.|++++|+++.+.+..
T Consensus 150 ~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 150 NINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998764
No 34
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=2.4e-33 Score=205.24 Aligned_cols=169 Identities=51% Similarity=0.930 Sum_probs=144.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+|++++|++|+|||||++++..+.+...+.||..+.+...+.+++..+.+.+||+||++++..++..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 68999999999999999999999998888998877777778888889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
++++++++++...|+..+....++.|+++|+||.|+........ .......+..+++..+++..+..+++++||+++.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 99999999986678888876657899999999999964321000 0011234788899999999988799999999999
Q ss_pred CHHHHHHHHHH
Q 028362 167 NVKAVFDAAIK 177 (210)
Q Consensus 167 ~i~~~~~~i~~ 177 (210)
|++++|+.++-
T Consensus 161 ~v~~lf~~~~~ 171 (173)
T cd04130 161 NLKEVFDTAIL 171 (173)
T ss_pred CHHHHHHHHHh
Confidence 99999988764
No 35
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=3.1e-33 Score=204.69 Aligned_cols=171 Identities=54% Similarity=0.991 Sum_probs=147.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|++|+|||||+++|..+.+...+.|+....+...+.+++..+.+.+||++|++.|...+..++++++++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888877777677888989999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccc--cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
++++.+++++...|...+....++.|+++|+||+|+.+..... ..+.....++.+++..+++.++..+++++||+++.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 9999999998667888887666789999999999986542100 01112224778889999999987789999999999
Q ss_pred CHHHHHHHHHHHH
Q 028362 167 NVKAVFDAAIKVV 179 (210)
Q Consensus 167 ~i~~~~~~i~~~~ 179 (210)
|++++|+.++..+
T Consensus 161 gi~~~f~~~~~~~ 173 (174)
T cd04135 161 GLKTVFDEAILAI 173 (174)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999876
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2e-33 Score=204.21 Aligned_cols=161 Identities=33% Similarity=0.663 Sum_probs=141.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||++++.++.+...+.|+.+.++.. .+..++..+.+.+||++|++++..++..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 799999999999999999999999988888888766543 4566778899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
|++++++++.+ ..|+..+.... ++.|+++|+||+|+.+... +..+++.+++..++. +++++||+++.
T Consensus 82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (165)
T cd01865 82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------VSSERGRQLADQLGF-EFFEASAKENI 149 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999988 78998887665 5799999999999976543 567788888888886 89999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 028362 167 NVKAVFDAAIKVVIK 181 (210)
Q Consensus 167 ~i~~~~~~i~~~~~~ 181 (210)
|++++|+++.+.+.+
T Consensus 150 gv~~l~~~l~~~~~~ 164 (165)
T cd01865 150 NVKQVFERLVDIICD 164 (165)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987653
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.6e-33 Score=203.90 Aligned_cols=158 Identities=33% Similarity=0.646 Sum_probs=141.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||++++..+.+.+.+.|+.+.++. ..+.+++..+.+.+||++|++++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888898877654 45677888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
|++++++++++ ..|+..+.... .++|+++|+||.|+..... +..+++..+++..+. +++++||+++.
T Consensus 81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (161)
T cd04117 81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM-DFFETSACTNS 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999998 78988887665 4799999999999976554 778899999988885 89999999999
Q ss_pred CHHHHHHHHHHH
Q 028362 167 NVKAVFDAAIKV 178 (210)
Q Consensus 167 ~i~~~~~~i~~~ 178 (210)
|++++|.++++.
T Consensus 149 ~v~~~f~~l~~~ 160 (161)
T cd04117 149 NIKESFTRLTEL 160 (161)
T ss_pred CHHHHHHHHHhh
Confidence 999999999865
No 38
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-35 Score=198.72 Aligned_cols=172 Identities=28% Similarity=0.535 Sum_probs=156.4
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 79 (210)
|+.+....+|++++|+.|.|||+|+++|..++|.+....|++.+|.. .+.+.++.+++++||++||++|++....|+++
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 44455667899999999999999999999999999989999998854 56789999999999999999999999999999
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
|.+.++|||++++++|+.+ ..|+.-..... +++.++++|||.|+...++ ++..++..|+++... .+.
T Consensus 82 AAGAlLVYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~fl 149 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFL 149 (214)
T ss_pred ccceEEEEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-eee
Confidence 9999999999999999998 79998877766 7899999999999999887 999999999999987 889
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
++||++|+|++|+|-...+.++.+-+
T Consensus 150 ETSa~TGeNVEEaFl~c~~tIl~kIE 175 (214)
T KOG0086|consen 150 ETSALTGENVEEAFLKCARTILNKIE 175 (214)
T ss_pred eecccccccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998876544
No 39
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.1e-33 Score=208.13 Aligned_cols=163 Identities=37% Similarity=0.625 Sum_probs=142.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEEC----------CEEEEEEEEeCCCcccccccCcc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAE----------GTTVNLGLWDTAGQEDYNRLRPL 75 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~ 75 (210)
..+||+++|++|||||||++++..+.+...+.|+.+.++.. .+... +..+.+.+||++|+++|..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56999999999999999999999999998888888766643 33332 45789999999999999999999
Q ss_pred cccCccEEEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
++++++++++|||+++++++.++ ..|+..+.... ++.|+++|+||+|+..... +..+++..+++..+
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~ 151 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----------VSEEQAKALADKYG 151 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----------cCHHHHHHHHHHcC
Confidence 99999999999999999999998 78998887653 5789999999999976544 67788999999988
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
. +++++||+++.|++++|+++++.+.+
T Consensus 152 ~-~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 152 I-PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred C-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 6 89999999999999999999988764
No 40
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=2.1e-33 Score=206.95 Aligned_cols=167 Identities=29% Similarity=0.550 Sum_probs=140.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||+++|..+.|.+.+.||.+.++. ..+.+++..+.+.+||++|+++|..++..++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999889999987664 46778899999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
|+++++++.++ ..|+..+.... ...| ++|+||+|+..... ........+++.++++..+. +++++||+++.
T Consensus 81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~-----~~~~~~~~~~~~~~a~~~~~-~~~e~SAk~g~ 152 (182)
T cd04128 81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLP-----PEEQEEITKQARKYAKAMKA-PLIFCSTSHSI 152 (182)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcccccc-----chhhhhhHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999998 78988877654 3456 68899999953210 00001234677888888885 89999999999
Q ss_pred CHHHHHHHHHHHHhCCc
Q 028362 167 NVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 167 ~i~~~~~~i~~~~~~~~ 183 (210)
|++++|+++.+.+...+
T Consensus 153 ~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 153 NVQKIFKIVLAKAFDLP 169 (182)
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 99999999999887643
No 41
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.7e-33 Score=208.70 Aligned_cols=162 Identities=32% Similarity=0.549 Sum_probs=143.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||+++|.++.+...+.|+.+.++. ..+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998778888876653 45677888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
|+++++++.++ ..|+..+.... .+.|+++|+||+|+..... +..+++..+++..+. +++++||+++.
T Consensus 81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~evSa~~~~ 148 (188)
T cd04125 81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------VDSNIAKSFCDSLNI-PFFETSAKQSI 148 (188)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999998 67988887765 5689999999999976543 677888888888887 89999999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 028362 167 NVKAVFDAAIKVVIKP 182 (210)
Q Consensus 167 ~i~~~~~~i~~~~~~~ 182 (210)
|++++|.++.+.+.+.
T Consensus 149 ~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 149 NVEEAFILLVKLIIKR 164 (188)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 42
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-34 Score=195.33 Aligned_cols=165 Identities=32% Similarity=0.644 Sum_probs=152.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEE-ECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
.+|++++|++.||||+|+.++.+..|.....+|.+.+|..+.. -..+.+.+++|||+|+++|+.+...+++.++++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 4699999999999999999999999999999999999876543 456889999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
||+++.+||..+ +.|...+..++ .+.|+|+|+||||+..++. ++.+.+..+++++|. .||++||+.+
T Consensus 101 yDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK~N 168 (193)
T KOG0093|consen 101 YDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAKEN 168 (193)
T ss_pred EecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhccccc
Confidence 999999999998 89999999988 7999999999999999887 899999999999998 8999999999
Q ss_pred CCHHHHHHHHHHHHhCCcc
Q 028362 166 QNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 166 ~~i~~~~~~i~~~~~~~~~ 184 (210)
.|++++|+.++..+-++..
T Consensus 169 inVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 169 INVKQVFERLVDIICDKMS 187 (193)
T ss_pred ccHHHHHHHHHHHHHHHhh
Confidence 9999999999988866543
No 43
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.9e-33 Score=212.55 Aligned_cols=161 Identities=28% Similarity=0.427 Sum_probs=141.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECC-EEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
+||+++|++|||||||+++|..+.+...+.||.+.++ ...+.+++ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999988899997665 34455543 579999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccC----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 87 FSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
||++++++++++ ..|+..+.... .+.|+++|+||+|+..... +..+++..+++.++. +++++||
T Consensus 81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iSA 148 (215)
T cd04109 81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVSA 148 (215)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEEC
Confidence 999999999998 78988887654 3468999999999975443 778889999998886 8899999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028362 163 KTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~ 181 (210)
++|.|++++|+++++.+..
T Consensus 149 ktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 149 KTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 44
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.3e-33 Score=204.35 Aligned_cols=159 Identities=40% Similarity=0.824 Sum_probs=146.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
||+++|++|||||||+++|.++.+.+.+.||. .+.+...+.+++..+.+.+||++|+++|..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998 44456678889999999999999999999988999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccCC-CCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN 167 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (210)
++++++++.+ ..|+..+....+ +.|++|||||.|+..... +..+++++++.+++ .+|+++||+++.|
T Consensus 81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELG-VPYFEVSAKNGEN 148 (162)
T ss_dssp TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTT-SEEEEEBTTTTTT
T ss_pred cccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhC-CEEEEEECCCCCC
Confidence 9999999998 699999998886 799999999999987554 88999999999999 5999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028362 168 VKAVFDAAIKVVI 180 (210)
Q Consensus 168 i~~~~~~i~~~~~ 180 (210)
+.++|..+++.+.
T Consensus 149 v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 149 VKEIFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 45
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.5e-33 Score=203.09 Aligned_cols=160 Identities=28% Similarity=0.556 Sum_probs=139.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
.+||+++|.+|||||||++++..+.+.+.+.|+....+...+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888888876555667778888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|++++++++++ ..|...+.... .++|+++|+||+|+..... +...+...++...+. +++++||+++
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd04176 81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKSK 148 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 99999999998 67877776543 5899999999999965433 566677888887775 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028362 166 QNVKAVFDAAIKVV 179 (210)
Q Consensus 166 ~~i~~~~~~i~~~~ 179 (210)
.|++++|.++++.+
T Consensus 149 ~~v~~l~~~l~~~l 162 (163)
T cd04176 149 TMVNELFAEIVRQM 162 (163)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998754
No 46
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=4.1e-33 Score=202.62 Aligned_cols=161 Identities=30% Similarity=0.661 Sum_probs=142.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
.+||+++|++|||||||++++.++.+...+.++.+.++. ..+.+++..+.+.+||+||++++..++..++++++++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 589999999999999999999999988888888776653 4566788889999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
||+++++++.++ ..|+..+.... ++.|+++|+||+|+..... +..+++..++...+. +++++||+++
T Consensus 82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (166)
T cd01869 82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------VDYSEAQEFADELGI-PFLETSAKNA 149 (166)
T ss_pred EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 999999999998 67988887765 6799999999999976544 677888999988886 8999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 028362 166 QNVKAVFDAAIKVVI 180 (210)
Q Consensus 166 ~~i~~~~~~i~~~~~ 180 (210)
.|++++|.++.+.+.
T Consensus 150 ~~v~~~~~~i~~~~~ 164 (166)
T cd01869 150 TNVEQAFMTMAREIK 164 (166)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998775
No 47
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=3.2e-33 Score=201.90 Aligned_cols=159 Identities=37% Similarity=0.609 Sum_probs=139.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
.+||+++|++|||||||+++|..+.+...+.|+....+.....+++..+.+.+||++|+++++.++..++++++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 37999999999999999999999998888888888777767788888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|++++.++.++ ..|...+.... .+.|+++|+||+|+.... +...++..++...+. +++++||+++
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (162)
T cd04138 81 AINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTR 147 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCC
Confidence 99999999987 66776665543 579999999999997632 567778888888776 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028362 166 QNVKAVFDAAIKVV 179 (210)
Q Consensus 166 ~~i~~~~~~i~~~~ 179 (210)
.|++++|+++++.+
T Consensus 148 ~gi~~l~~~l~~~~ 161 (162)
T cd04138 148 QGVEEAFYTLVREI 161 (162)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998754
No 48
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=3.6e-33 Score=202.80 Aligned_cols=158 Identities=25% Similarity=0.500 Sum_probs=137.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|++|||||||++++..+.+...+.|+.+..+......+...+.+.+||++|+++|..++..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888877776666677888999999999999999998889999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccC----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 89 LVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
++++++++++ ..|+..+.... +++|+++|+||+|+..... +..+++..++...+. +++++||++
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA~~ 149 (165)
T cd04140 82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----------VSSNEGAACATEWNC-AFMETSAKT 149 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----------ecHHHHHHHHHHhCC-cEEEeecCC
Confidence 9999999987 67776665432 5799999999999976433 667778888887775 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028362 165 QQNVKAVFDAAIKV 178 (210)
Q Consensus 165 ~~~i~~~~~~i~~~ 178 (210)
|.|++++|+++++.
T Consensus 150 g~~v~~~f~~l~~~ 163 (165)
T cd04140 150 NHNVQELFQELLNL 163 (165)
T ss_pred CCCHHHHHHHHHhc
Confidence 99999999999864
No 49
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.6e-33 Score=211.34 Aligned_cols=169 Identities=28% Similarity=0.427 Sum_probs=134.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|.+|||||||+++|..+.|.. +.||.+..+.... ...+.+.+||++|++.|..++..++++++++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~---~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ---WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE---eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999999865 5677765543221 256889999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccc---------ccCCCCCCccCHHHHHHHHHHcCC-----
Q 028362 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY---------LADHPGLVPVTTAQGEELRKQIGA----- 154 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----- 154 (210)
++++++|.++...|........+++|++||+||+|+...... .........+..+++..++++.+.
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 999999999844444444333467999999999999752110 000112345889999999998762
Q ss_pred --------cEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 155 --------SYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 155 --------~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
.+|+++||++|.||+++|..+++.+..
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 379999999999999999999987764
No 50
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=4e-33 Score=202.19 Aligned_cols=160 Identities=34% Similarity=0.607 Sum_probs=140.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|++|||||||++++..+.+...+.|+....+.....+++..+.+.+||+||++++..++..++++++++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999988888888877776677788889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
+++++++..+ ..|...+.... .+.|+++|+||+|+..... +..+++..+++..+. +++++||+++.
T Consensus 81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T smart00173 81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERV 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCC
Confidence 9999999987 67766655432 4789999999999976543 567788888888885 89999999999
Q ss_pred CHHHHHHHHHHHHh
Q 028362 167 NVKAVFDAAIKVVI 180 (210)
Q Consensus 167 ~i~~~~~~i~~~~~ 180 (210)
|++++|+++++.+.
T Consensus 149 ~i~~l~~~l~~~~~ 162 (164)
T smart00173 149 NVDEAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998765
No 51
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.2e-33 Score=206.60 Aligned_cols=162 Identities=34% Similarity=0.662 Sum_probs=141.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
+||+++|++|||||||++++..+.+.. .+.++.+.++.. .+.+++..+.+.+||+||++++...+..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988753 567777666543 467788899999999999999999899999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
||++++++++++ ..|+..+.... .++|+++|+||.|+..... +..+++..++..++. +++++||+++
T Consensus 81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~Sa~~~ 148 (191)
T cd04112 81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------VKREDGERLAKEYGV-PFMETSAKTG 148 (191)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------cCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 999999999998 77888887765 4799999999999975443 667788888888886 8999999999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 028362 166 QNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 166 ~~i~~~~~~i~~~~~~~ 182 (210)
.|++++|.++++.+...
T Consensus 149 ~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 149 LNVELAFTAVAKELKHR 165 (191)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988765
No 52
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.1e-32 Score=200.43 Aligned_cols=160 Identities=29% Similarity=0.504 Sum_probs=136.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||++++..+.+...+.|+.+..+. ..+..++..+.+.+||++|++++..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888888876653 34556778899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN 167 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (210)
|+++++++..+ ..|+..+.....++|+++|+||+|+.... +. .....+++..+ .+++++||+++.|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~-~~~~e~Sa~~~~~ 146 (166)
T cd00877 81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKN-LQYYEISAKSNYN 146 (166)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 99999999998 78988888777789999999999997332 22 33455666555 4899999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 028362 168 VKAVFDAAIKVVIKP 182 (210)
Q Consensus 168 i~~~~~~i~~~~~~~ 182 (210)
++++|+++++.+.+.
T Consensus 147 v~~~f~~l~~~~~~~ 161 (166)
T cd00877 147 FEKPFLWLARKLLGN 161 (166)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999988753
No 53
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=8e-33 Score=205.68 Aligned_cols=168 Identities=40% Similarity=0.641 Sum_probs=133.1
Q ss_pred eeEEEEECCCCCCHHHHHH-HHHcC-----CCCCCCCCcee--eeeeEE--------EEECCEEEEEEEEeCCCcccccc
Q 028362 8 FIKCVTVGDGAVGKTCMLI-CYTSN-----KFPTDYIPTVF--DNFSAN--------VVAEGTTVNLGLWDTAGQEDYNR 71 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~-~l~~~-----~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 71 (210)
.+||+++|++|||||||+. ++.++ .+...+.||.+ ..+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 55544 34566788884 333322 25788999999999999975 3
Q ss_pred cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccc---------cCCCCCCccCH
Q 028362 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL---------ADHPGLVPVTT 142 (210)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~---------~~~~~~~~~~~ 142 (210)
+...+++++|++|+|||++++.|++++...|+..+....++.|+++||||+|+....... ........++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 456688999999999999999999998546998887766789999999999996421000 00011345889
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 143 AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
+++++++++++. +|++|||+++.|++++|+.++++
T Consensus 160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999997 99999999999999999999864
No 54
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=7.8e-33 Score=201.05 Aligned_cols=161 Identities=24% Similarity=0.548 Sum_probs=141.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||+++|.++.+...+.|+.+.++. ..+.+++..+.+.+||++|++.+..++..++++++++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888999877763 45677889999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC------CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 88 SLVSRASYENVLKKWIPELQHYS------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
|+++++++..+ ..|+..+.... .+.|+++|+||+|+..... +..++...++...+. +++++|
T Consensus 81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 148 (168)
T cd04119 81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFETS 148 (168)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence 99999999987 78888877654 3689999999999974332 677788888888885 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhC
Q 028362 162 SKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~ 181 (210)
|+++.|++++|+++++.+++
T Consensus 149 a~~~~gi~~l~~~l~~~l~~ 168 (168)
T cd04119 149 ACTGEGVNEMFQTLFSSIVD 168 (168)
T ss_pred CCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999988753
No 55
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.6e-33 Score=201.04 Aligned_cols=161 Identities=32% Similarity=0.553 Sum_probs=141.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
..+||+++|++|+|||||++++..+.+...+.++.+.++. ..+.+++..+.+++||+||++.+..++..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999888877787765553 456678888899999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
|||+++++++..+ ..|+..+.... .++|+++|+||+|+..... ...+++..+++.++...++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (165)
T cd01864 82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEKNGMLAVLETSAKE 150 (165)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCCcEEEEEECCC
Confidence 9999999999987 78988887654 6899999999999976544 6778888999988877889999999
Q ss_pred CCCHHHHHHHHHHH
Q 028362 165 QQNVKAVFDAAIKV 178 (210)
Q Consensus 165 ~~~i~~~~~~i~~~ 178 (210)
+.|++++|+++.+.
T Consensus 151 ~~~v~~~~~~l~~~ 164 (165)
T cd01864 151 SQNVEEAFLLMATE 164 (165)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999865
No 56
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=7.7e-33 Score=200.55 Aligned_cols=160 Identities=34% Similarity=0.600 Sum_probs=140.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
.+||+++|++|||||||++++..+.+...+.|+....+.....+++..+.+.+||+||++++..++..+++++|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999988888888887777667778898999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|++++++++.+ ..|...+.... .++|+++|+||+|+..... +..+++..+++..+. +++++||+++
T Consensus 82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (164)
T cd04145 82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKDR 149 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCCC
Confidence 99999999987 67776665532 5799999999999976543 567778888888876 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028362 166 QNVKAVFDAAIKVV 179 (210)
Q Consensus 166 ~~i~~~~~~i~~~~ 179 (210)
.|++++|+++++.+
T Consensus 150 ~~i~~l~~~l~~~~ 163 (164)
T cd04145 150 LNVDKAFHDLVRVI 163 (164)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998764
No 57
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=7.5e-33 Score=200.31 Aligned_cols=158 Identities=33% Similarity=0.569 Sum_probs=140.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEEC--CEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE--GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
+||+++|++|+|||||++++..+.+...+.|+.+.++. ..+.+. +..+.+++||+||++++..++..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999999988888888877663 345555 778999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|||+++++++..+ ..|+..+.....++|+++|+||.|+..... +..+++..+++.++. +++++||+++
T Consensus 81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (162)
T cd04106 81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDD 148 (162)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 9999999999987 789988877667899999999999976543 677888999999886 8999999999
Q ss_pred CCHHHHHHHHHHH
Q 028362 166 QNVKAVFDAAIKV 178 (210)
Q Consensus 166 ~~i~~~~~~i~~~ 178 (210)
.|++++|+++.+.
T Consensus 149 ~~v~~l~~~l~~~ 161 (162)
T cd04106 149 FNVTELFEYLAEK 161 (162)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999764
No 58
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.6e-32 Score=200.23 Aligned_cols=162 Identities=35% Similarity=0.630 Sum_probs=140.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
....+||+++|++|||||||++++..+.+.+.+.++.+..+ ...+.+++..+.+.+||+||+++++.++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999999888788877665 34567789999999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
++|||++++++++.+ ..|...+.... .++|+++|+||+|+.... +..+++.+++++++..+++
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd04116 82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-----------VSTEEAQAWCRENGDYPYF 149 (170)
T ss_pred EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECccccccc-----------cCHHHHHHHHHHCCCCeEE
Confidence 999999999999987 67876554322 468999999999997432 6788899999988876899
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 028362 159 ECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~ 178 (210)
++||+++.|++++|.++++.
T Consensus 150 e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 150 ETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEECCCCCCHHHHHHHHHhh
Confidence 99999999999999999865
No 59
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=2.3e-32 Score=197.81 Aligned_cols=158 Identities=28% Similarity=0.516 Sum_probs=136.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||++++..+.+.+.+.++....+ .....+++..+.+.+||++|+++|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999999888777765554 335667888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN 167 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (210)
|++++.++.++ ..|+..+....+++|+++|+||+|+... ...+...+++..+. +++++||+++.|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~~~~~~~~~~-~~~~~Sa~~~~g 145 (161)
T cd04124 81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS-------------VTQKKFNFAEKHNL-PLYYVSAADGTN 145 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------HHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 99999999987 7899888776678999999999998432 23445667776665 889999999999
Q ss_pred HHHHHHHHHHHHhC
Q 028362 168 VKAVFDAAIKVVIK 181 (210)
Q Consensus 168 i~~~~~~i~~~~~~ 181 (210)
++++|+.+++.+.+
T Consensus 146 v~~l~~~l~~~~~~ 159 (161)
T cd04124 146 VVKLFQDAIKLAVS 159 (161)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987765
No 60
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.9e-32 Score=207.09 Aligned_cols=164 Identities=30% Similarity=0.553 Sum_probs=145.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
+..+||+++|++|||||||+++|.++.+...+.||.+.++ ...+.+++..+.+.+||++|++++..++..++++++++|
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 3668999999999999999999999998878888887776 456778888999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
+|||++++.+++++ ..|+..+.... .++|+++|+||+|+..... +..+++..++..++. +++++||+
T Consensus 90 lv~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~SA~ 157 (216)
T PLN03110 90 LVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------VAEEDGQALAEKEGL-SFLETSAL 157 (216)
T ss_pred EEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999987 78988887765 5899999999999966544 677888888888876 89999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028362 164 TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~ 181 (210)
++.|++++|++++..+..
T Consensus 158 ~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 158 EATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 61
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=2.1e-32 Score=197.29 Aligned_cols=155 Identities=25% Similarity=0.353 Sum_probs=129.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|++|||||||+.++..+.|.+.+.|+ ...+...+.+++..+.+.+||++|++.. .+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEE
Confidence 58999999999999999999999887766555 3445566788999999999999999752 46688999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
++++++|+++ ..|+..+.... +++|+++||||.|+.... ...+..+++.++++..+..+|++|||+++.
T Consensus 75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESN--------PRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC--------CcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 9999999998 67888887664 679999999999985321 112778888999987765689999999999
Q ss_pred CHHHHHHHHHHH
Q 028362 167 NVKAVFDAAIKV 178 (210)
Q Consensus 167 ~i~~~~~~i~~~ 178 (210)
||+++|.++++.
T Consensus 146 ~i~~~f~~~~~~ 157 (158)
T cd04103 146 NVERVFQEAAQK 157 (158)
T ss_pred CHHHHHHHHHhh
Confidence 999999999864
No 62
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=194.66 Aligned_cols=163 Identities=32% Similarity=0.553 Sum_probs=145.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEE--EECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV--VAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
..+|++++|++-||||+|++.|..++|.+...||.+.+|..++ .-++..+++++|||+||++|+++...|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 4689999999999999999999999999999999988875432 34688899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC--CCC-cEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS--PGV-PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~-piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+|||+++++||+.+ +.|+....-+. |.. ..++||+|+|+...+. ++.++++.++..++. .|+++|
T Consensus 87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEklAa~hgM-~FVETS 154 (213)
T KOG0091|consen 87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKLAASHGM-AFVETS 154 (213)
T ss_pred EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHHHHhcCc-eEEEec
Confidence 99999999999998 89988766553 444 4569999999998776 999999999999998 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhC
Q 028362 162 SKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~ 181 (210)
|+++.|+++.|..+.+.+..
T Consensus 155 ak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 155 AKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred ccCCCcHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 63
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=6.7e-32 Score=197.82 Aligned_cols=171 Identities=49% Similarity=0.917 Sum_probs=144.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
.||+++|++|||||||+++|..+.+...+.|+....+...+.+++..+.+.+||++|++.+...+..++.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888898887776677788889999999999999999999889999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
++++++++.+...|...+....+++|+++|+||.|+......... ......+...+++.++...+..+++++||+++.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence 999999998866788888776678999999999998654221110 011123567788888988887789999999999
Q ss_pred CHHHHHHHHHHHH
Q 028362 167 NVKAVFDAAIKVV 179 (210)
Q Consensus 167 ~i~~~~~~i~~~~ 179 (210)
|++++|.++.+.+
T Consensus 162 ~v~~lf~~l~~~~ 174 (175)
T cd01870 162 GVREVFEMATRAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 64
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.6e-32 Score=203.37 Aligned_cols=155 Identities=26% Similarity=0.481 Sum_probs=135.2
Q ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCCh
Q 028362 14 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR 92 (210)
Q Consensus 14 lG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (210)
+|++|||||||+++|..+.+...+.||.+.++ ...+.+++..+.+.+||++|+++|+.++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888899987665 44567788899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHH
Q 028362 93 ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172 (210)
Q Consensus 93 ~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 172 (210)
.+++.+ ..|+..+....+++|+++||||+|+.... +..+. ..++...+. ++++|||+++.||+++|
T Consensus 81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F 146 (200)
T smart00176 81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPF 146 (200)
T ss_pred HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHH
Confidence 999998 78999888777789999999999996432 33333 466777665 89999999999999999
Q ss_pred HHHHHHHhCC
Q 028362 173 DAAIKVVIKP 182 (210)
Q Consensus 173 ~~i~~~~~~~ 182 (210)
.++++.+...
T Consensus 147 ~~l~~~i~~~ 156 (200)
T smart00176 147 LWLARKLIGD 156 (200)
T ss_pred HHHHHHHHhc
Confidence 9999988654
No 65
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3.6e-32 Score=198.45 Aligned_cols=162 Identities=30% Similarity=0.515 Sum_probs=139.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
||+++|++|||||||++++..+.|...+.||.+..+. ..+.+++..+.+.+||++|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999999999999987764 456778889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhcc-C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
+++++++..+ ..|+..+... . .+.|+++|+||.|+.+... .....+++..++++++. +++++||+++.
T Consensus 82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~ 151 (170)
T cd04108 82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGE 151 (170)
T ss_pred CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 9999999998 7898876543 3 3578999999999864421 11346677788888886 88999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 028362 167 NVKAVFDAAIKVVIK 181 (210)
Q Consensus 167 ~i~~~~~~i~~~~~~ 181 (210)
|++++|+.+++.+.+
T Consensus 152 ~v~~lf~~l~~~~~~ 166 (170)
T cd04108 152 NVREFFFRVAALTFE 166 (170)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 66
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=4.5e-32 Score=202.27 Aligned_cols=166 Identities=23% Similarity=0.397 Sum_probs=133.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccccc--------CcccccC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLSYRG 79 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~ 79 (210)
+||+|+|.+|||||||+++|..+.+...+.|+....+ ...+.+++..+.+++||+||.+.+... ....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888886554 345667888899999999997655321 2234789
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhcc----CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHY----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
+|++|+|||++++++++.+ ..|...+... ..++|+++|+||+|+...+. +..+++..++.+....
T Consensus 81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----------~~~~~~~~~~~~~~~~ 149 (198)
T cd04142 81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----------APRHVLSVLVRKSWKC 149 (198)
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECcccccccc----------ccHHHHHHHHHHhcCC
Confidence 9999999999999999998 6777766554 36799999999999976543 5566677766543334
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhCCccc
Q 028362 156 YYIECSSKTQQNVKAVFDAAIKVVIKPPQK 185 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 185 (210)
+++++||++|.|++++|+.++..+..+...
T Consensus 150 ~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 150 GYLECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred cEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 899999999999999999999988876543
No 67
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=3.9e-32 Score=197.22 Aligned_cols=161 Identities=32% Similarity=0.577 Sum_probs=141.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
..+||+++|++|||||||++++..+.+...+.|+.+.++ ...+..++..+.+.+||+||++++..++..++++++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 358999999999999999999999998878788887665 4456678888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
|||++++.++.++ ..|+..+.... .++|+++|+||+|+..... +..++...++...+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (165)
T cd01868 82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGL-SFIETSALD 149 (165)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------CCHHHHHHHHHHcCC-EEEEEECCC
Confidence 9999999999998 68988887766 4699999999999976543 677788888887765 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028362 165 QQNVKAVFDAAIKVV 179 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~ 179 (210)
+.|++++|+++++.+
T Consensus 150 ~~~v~~l~~~l~~~i 164 (165)
T cd01868 150 GTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 68
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-33 Score=191.88 Aligned_cols=164 Identities=31% Similarity=0.590 Sum_probs=148.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
+-.+||+++|..|||||+|+++|..+.|++..-.|++.+|.. ++.+++..+++++||++||++|+++...|++.|+++|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 456899999999999999999999999999988999988855 6789999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
+|||++..++|+-+ ..|+..++.+. ..+-.|+||||.|+.+.+. +..+.+++|+..... .|.++||+
T Consensus 85 lvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------vp~qigeefs~~qdm-yfletsak 152 (213)
T KOG0095|consen 85 LVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------VPQQIGEEFSEAQDM-YFLETSAK 152 (213)
T ss_pred EEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------hhHHHHHHHHHhhhh-hhhhhccc
Confidence 99999999999987 89999999987 4566789999999988876 888899999988765 88999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028362 164 TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~ 181 (210)
+.+|++.+|..+.-.+..
T Consensus 153 ea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 153 EADNVEKLFLDLACRLIS 170 (213)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 999999999988776653
No 69
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=3.3e-32 Score=196.87 Aligned_cols=159 Identities=30% Similarity=0.579 Sum_probs=139.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..++++++++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988877777766553 44667888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
|+++++++.++ ..|+..+.... +++|+++|+||.|+..... +..+++..++...+ .+++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 148 (161)
T cd04113 81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENG-LLFLETSALTGE 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcC-CEEEEEECCCCC
Confidence 99999999997 78888776554 7899999999999976543 67888899999888 489999999999
Q ss_pred CHHHHHHHHHHHH
Q 028362 167 NVKAVFDAAIKVV 179 (210)
Q Consensus 167 ~i~~~~~~i~~~~ 179 (210)
|++++|+++++.+
T Consensus 149 ~i~~~~~~~~~~~ 161 (161)
T cd04113 149 NVEEAFLKCARSI 161 (161)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998753
No 70
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=1.2e-31 Score=198.68 Aligned_cols=174 Identities=46% Similarity=0.772 Sum_probs=146.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
.||+|+|++|+|||||++++..+.+.+.+.++....+...+..++..+.+.+||++|++.+.......+..++++++|||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988888777788777766667778888999999999999988887778899999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH
Q 028362 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 168 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (210)
++++++++++...|+..+....+++|+++|+||+|+...............+..+++..+++..+..+++++||+++.|+
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 161 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV 161 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence 99999999986679998887777899999999999865322111112233366788899999998778999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 028362 169 KAVFDAAIKVVIKP 182 (210)
Q Consensus 169 ~~~~~~i~~~~~~~ 182 (210)
+++|+++.+.+..-
T Consensus 162 ~~~f~~l~~~~~~~ 175 (187)
T cd04129 162 DDVFEAATRAALLV 175 (187)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999877654
No 71
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=6e-32 Score=196.93 Aligned_cols=162 Identities=32% Similarity=0.548 Sum_probs=142.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
.+||+++|.+|||||||++++..+.+...+.|+....+...+.+++..+.+.+||+||+++|..++..++++++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 37999999999999999999999998888888887777667778888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|++++++++.. ..|...+... ..+.|+++++||.|+..... ...+++..+++.++..+++++||+++
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (168)
T cd04177 81 SVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKR 149 (168)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHcCCceEEEeeCCCC
Confidence 99999999998 6777766643 25899999999999976543 66777888888887558999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 028362 166 QNVKAVFDAAIKVVI 180 (210)
Q Consensus 166 ~~i~~~~~~i~~~~~ 180 (210)
.|++++|.+++..+.
T Consensus 150 ~~i~~~f~~i~~~~~ 164 (168)
T cd04177 150 TNVDEVFIDLVRQII 164 (168)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998764
No 72
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.1e-31 Score=199.77 Aligned_cols=166 Identities=33% Similarity=0.541 Sum_probs=141.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
+||+++|++|||||||+++|..+.+.. .+.+|.+..+. ..+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998874 67788877664 4577889999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
||++++.+++++ ..|+..+....++.|+++|+||+|+..... ....+..+++..++...+. +++++||+++.
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 152 (193)
T cd04118 81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQVDFHDVQDFADEIKA-QHFETSSKTGQ 152 (193)
T ss_pred EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc------ccCccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 999999999987 789988877667899999999999864321 1122556778888888776 78999999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 028362 167 NVKAVFDAAIKVVIKP 182 (210)
Q Consensus 167 ~i~~~~~~i~~~~~~~ 182 (210)
|++++|+++.+.+.+.
T Consensus 153 gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 153 NVDELFQKVAEDFVSR 168 (193)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988654
No 73
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=193.97 Aligned_cols=166 Identities=33% Similarity=0.639 Sum_probs=151.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
.-.+|++++|..=||||+|+-|+..++|...+.+|....| ..++.+.+....+.||||+||++|..+-+.|++++++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 3568999999999999999999999999999888885555 556778889999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
+|||++|+.||+.+ ..|...+.... ..+.++|||||+|+...+. ++.++++.+++..++ .++++||+
T Consensus 91 LVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSAk 158 (218)
T KOG0088|consen 91 LVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSAK 158 (218)
T ss_pred EEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheecccc
Confidence 99999999999998 89999988876 6789999999999999887 999999999999998 78899999
Q ss_pred CCCCHHHHHHHHHHHHhCCc
Q 028362 164 TQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~~ 183 (210)
++.||.++|+.+...+.+..
T Consensus 159 ~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 159 DNVGISELFESLTAKMIEHS 178 (218)
T ss_pred cccCHHHHHHHHHHHHHHHh
Confidence 99999999999998887543
No 74
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=4.1e-32 Score=208.50 Aligned_cols=164 Identities=28% Similarity=0.436 Sum_probs=140.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|++|||||||+++|..+.+...+.||..+.+...+.+++..+.+.+||++|++.|..++..++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888898876666677888999999999999999998888888999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhcc----------CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 89 LVSRASYENVLKKWIPELQHY----------SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~----------~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
++++++|+++ ..|.+.+... ..++|+++|+||+|+..... +..+++.+++.......++
T Consensus 81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~~ 149 (247)
T cd04143 81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYF 149 (247)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEEE
Confidence 9999999998 6777666432 25799999999999975433 6777788777654445899
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
++||+++.|++++|++++..+..+.
T Consensus 150 evSAktg~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAKLPN 174 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999775443
No 75
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=7e-32 Score=196.96 Aligned_cols=161 Identities=31% Similarity=0.555 Sum_probs=140.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCccccc-ccCcccccCccEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADVFV 84 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~~i 84 (210)
+.+||+++|++|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+||++|+++++ .++..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 4589999999999999999999999988888888866553 456778889999999999999887 57888999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
+|||+++++++..+ ..|+..+.... .++|+++|+||+|+..... +..+++.+++...+. +++++||
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa 148 (170)
T cd04115 81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSA 148 (170)
T ss_pred EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEec
Confidence 99999999999998 78998877654 5799999999999976654 677888889888774 8999999
Q ss_pred CC---CCCHHHHHHHHHHHH
Q 028362 163 KT---QQNVKAVFDAAIKVV 179 (210)
Q Consensus 163 ~~---~~~i~~~~~~i~~~~ 179 (210)
++ +.|++++|.++++.+
T Consensus 149 ~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 149 KDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCcCCCCHHHHHHHHHHHh
Confidence 99 899999999998766
No 76
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=8.6e-32 Score=196.13 Aligned_cols=163 Identities=29% Similarity=0.585 Sum_probs=141.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
..+||+++|.+|||||||++++..+.+...+.++.+.++. ..+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999999888877777766553 345677888899999999999999988889999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
|||+++++++..+ ..|+..+.... +++|+++|+||.|+..... +..+++..++...+. +++++||++
T Consensus 83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~ 150 (168)
T cd01866 83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSAKT 150 (168)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 78998887654 7899999999999975433 677888888888876 899999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028362 165 QQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~~ 181 (210)
+.|++++|.++.+.+.+
T Consensus 151 ~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 151 ASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988754
No 77
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=6.3e-32 Score=197.02 Aligned_cols=164 Identities=20% Similarity=0.286 Sum_probs=138.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
++.+||+++|.+|||||||+++|..+.+. ..+.||.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999998 888899877764 3466788888999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
++|||++++.+++.+ ..|+..+... .++|+++|+||+|+.+... +...+...+++.++..+++++||+
T Consensus 82 llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T cd01892 82 CLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSSK 149 (169)
T ss_pred EEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEec
Confidence 999999999999887 6777765432 4799999999999965432 333455677777776556899999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028362 164 TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~ 181 (210)
++.|++++|+.+.+.+..
T Consensus 150 ~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 150 LGDSSNELFTKLATAAQY 167 (169)
T ss_pred cCccHHHHHHHHHHHhhC
Confidence 999999999999998764
No 78
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.6e-32 Score=203.43 Aligned_cols=163 Identities=32% Similarity=0.550 Sum_probs=140.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEE-CCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.+||+++|++|||||||+++|..+.+...+.|+.+.++.. .+.+ ++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999999888878888766533 3444 5678899999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
|||++++++++++ ..|+..+.... ...|++||+||.|+..... +..++...+++.++. +++++||+
T Consensus 82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak 149 (211)
T cd04111 82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM-KYIETSAR 149 (211)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHhCC-EEEEEeCC
Confidence 9999999999998 67888776543 3578899999999976544 778888999999885 89999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028362 164 TQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~ 182 (210)
++.|++++|+++++.+.+.
T Consensus 150 ~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 150 TGDNVEEAFELLTQEIYER 168 (211)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 79
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=7.6e-32 Score=203.08 Aligned_cols=167 Identities=29% Similarity=0.569 Sum_probs=145.4
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
+....+||+|+|++|||||||+++|..+.+...+.|+.+.++. ..+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus 2 ~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~ 81 (210)
T PLN03108 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 3456799999999999999999999999888877888876653 356778888999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+++|||+++++++..+ ..|+..+.... +..|+++|+||+|+..... +..+++.++++.++. +++++|
T Consensus 82 ~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~S 149 (210)
T PLN03108 82 ALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEAS 149 (210)
T ss_pred EEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------CCHHHHHHHHHHcCC-EEEEEe
Confidence 9999999999999987 67877666544 6899999999999976544 778889999998886 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCC
Q 028362 162 SKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~ 182 (210)
|+++.|++++|.++++.+.+.
T Consensus 150 a~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 150 AKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999888754
No 80
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=5.2e-32 Score=205.30 Aligned_cols=160 Identities=24% Similarity=0.385 Sum_probs=134.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcee-eeeeEEEEECCEEEEEEEEeCCCcccccccCccccc-CccEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR-GADVFVL 85 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~~~~i~ 85 (210)
+||+++|++|||||||+++|..+.+. ..+.++.+ ..+...+.+++..+.+.+||++|++. .....+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 66666665 44456677888999999999999982 33344566 8999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
|||++++.+++.+ ..|+..+.... .++|+++|+||+|+..... +..+++..++...+. +++++||+
T Consensus 79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~SA~ 146 (221)
T cd04148 79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE----------VSVQEGRACAVVFDC-KFIETSAG 146 (221)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce----------ecHHHHHHHHHHcCC-eEEEecCC
Confidence 9999999999987 67888776654 5799999999999976554 677778888888776 89999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028362 164 TQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~ 182 (210)
++.|++++|+++++.+...
T Consensus 147 ~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 147 LQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999988644
No 81
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=9.1e-32 Score=195.39 Aligned_cols=159 Identities=30% Similarity=0.530 Sum_probs=136.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc-ccccCcccccCccEEEEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~~i~v~d 88 (210)
||+++|++|||||||++++..+.+...+.|+....+.....+++..+.+.+||+||++. +...+..+++.+|++|+|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 68999999999999999999988877777877666666677888999999999999985 34556778999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 89 LVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
++++++++.+ ..|+..+.... .++|+++|+||+|+..... +..+++..+++.++. +++++||+++
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~ 148 (165)
T cd04146 81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAED 148 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCCC
Confidence 9999999998 77887777643 4899999999999976543 677888999998885 8999999999
Q ss_pred -CCHHHHHHHHHHHHh
Q 028362 166 -QNVKAVFDAAIKVVI 180 (210)
Q Consensus 166 -~~i~~~~~~i~~~~~ 180 (210)
.|++++|+++++.+.
T Consensus 149 ~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 149 YDGVHSVFHELCREVR 164 (165)
T ss_pred chhHHHHHHHHHHHHh
Confidence 599999999998764
No 82
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=4.5e-31 Score=192.54 Aligned_cols=169 Identities=62% Similarity=1.091 Sum_probs=144.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|++|||||||+++|.++.+...+.|+....+......++..+.+++||+||++.+...+..+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999988788888877777777888999999999999999998888888999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC-CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD-HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN 167 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (210)
++++.++......|+..+....++.|+++|+||+|+......... ......+..+++.+++..++..+++++||+++.|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG 160 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence 999999998877899888877779999999999999876531100 0011235677888888888877899999999999
Q ss_pred HHHHHHHHHH
Q 028362 168 VKAVFDAAIK 177 (210)
Q Consensus 168 i~~~~~~i~~ 177 (210)
++++|+++++
T Consensus 161 i~~l~~~i~~ 170 (171)
T cd00157 161 VKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 83
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=4.2e-31 Score=191.38 Aligned_cols=161 Identities=35% Similarity=0.676 Sum_probs=141.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||++++.++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777788776653 35667788889999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
|++++.+++.+ ..|+..+.... +++|+++|+||+|+..... +..+.+..+++.++. +++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (164)
T smart00175 81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------VSREEAEAFAEEHGL-PFFETSAKTNT 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999987 67988887766 7899999999999876443 567788888888886 79999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 028362 167 NVKAVFDAAIKVVIK 181 (210)
Q Consensus 167 ~i~~~~~~i~~~~~~ 181 (210)
|++++|+++.+.+.+
T Consensus 149 ~i~~l~~~i~~~~~~ 163 (164)
T smart00175 149 NVEEAFEELAREILK 163 (164)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988754
No 84
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-34 Score=196.05 Aligned_cols=167 Identities=37% Similarity=0.594 Sum_probs=149.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEE---------CCEEEEEEEEeCCCcccccccCcc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVA---------EGTTVNLGLWDTAGQEDYNRLRPL 75 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~i~D~~G~~~~~~~~~~ 75 (210)
...+|.+.+|++|||||+++.++..++|...-.+|.+.+|..+ +.+ .+..+.+++||++||++|+++...
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 3557999999999999999999999999999899999888543 333 346789999999999999999999
Q ss_pred cccCccEEEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
++++|-+++++||+++..||.++ ..|+..++.+. .+..+|++|||+|+.+.+. ++.+++..++.+++
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----------Vs~~qa~~La~kyg 155 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----------VSEDQAAALADKYG 155 (219)
T ss_pred HHHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----------hhHHHHHHHHHHhC
Confidence 99999999999999999999998 89999988765 6778999999999998877 89999999999999
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
+ |||++||-+|.|+++..+.+...++++.+
T Consensus 156 l-PYfETSA~tg~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 156 L-PYFETSACTGTNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred C-CeeeeccccCcCHHHHHHHHHHHHHHHHH
Confidence 8 99999999999999999998888876544
No 85
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=4.2e-31 Score=191.57 Aligned_cols=159 Identities=31% Similarity=0.547 Sum_probs=135.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC--CCCCCCCCceeeeeeE-EEEE-CCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFSA-NVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
+||+++|++|||||||++++..+ .+...+.|+.+.++.. ...+ .+..+.+.+||++|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6778888888766533 3444 367799999999999999998999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
+|||+++++++.++ ..|++.+....++.|+++|+||+|+.+... +....+..++...+. +++++||++
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (164)
T cd04101 81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALR 148 (164)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 99999999999887 789988887667899999999999976543 566666777777775 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028362 165 QQNVKAVFDAAIKVV 179 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~ 179 (210)
+.|++++|+++.+.+
T Consensus 149 ~~gi~~l~~~l~~~~ 163 (164)
T cd04101 149 GVGYEEPFESLARAF 163 (164)
T ss_pred CCChHHHHHHHHHHh
Confidence 999999999998865
No 86
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=6.2e-31 Score=190.43 Aligned_cols=160 Identities=35% Similarity=0.644 Sum_probs=140.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
++||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998877778877655 45677888999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
+|+++++++..+ ..|+..+.... +..|+++++||+|+..... ...++...++...+. +++++||+++
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd01860 81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------VSTEEAQEYADENGL-LFFETSAKTG 148 (163)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------CCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999998 78888777665 6899999999999875433 577788888888885 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028362 166 QNVKAVFDAAIKVV 179 (210)
Q Consensus 166 ~~i~~~~~~i~~~~ 179 (210)
.|++++|+++++.+
T Consensus 149 ~~v~~l~~~l~~~l 162 (163)
T cd01860 149 ENVNELFTEIAKKL 162 (163)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 87
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=9.2e-31 Score=191.08 Aligned_cols=163 Identities=32% Similarity=0.595 Sum_probs=139.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||++++.++.+...+.++.+.++ .....+++..+.+.+||+||++.+..++..+++.++++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988877777776555 345677888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC-----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 88 SLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
|+++++++.+. ..|...+.... .++|+++|+||+|+..... ...++...+.+..+..+++++||
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa 149 (172)
T cd01862 81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETSA 149 (172)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEEC
Confidence 99999999887 67766544332 3799999999999975332 56777888888887668999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028362 163 KTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~ 182 (210)
+++.|++++|+++.+.+...
T Consensus 150 ~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 150 KEAINVEQAFETIARKALEQ 169 (172)
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999988765
No 88
>PLN03118 Rab family protein; Provisional
Probab=99.98 E-value=1.3e-30 Score=196.71 Aligned_cols=167 Identities=31% Similarity=0.594 Sum_probs=141.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
....+||+++|++|||||||+++|..+.+. .+.|+.+.++. ..+.+++..+.+.+||+||+++|..++..+++++|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 345689999999999999999999988774 45677766553 3466778889999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
|+|||++++++++++...|...+.... .+.|+++|+||+|+..... +..++...++..++. +++++|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~S 158 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----------VSREEGMALAKEHGC-LFLECS 158 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-EEEEEe
Confidence 999999999999998656777666543 4689999999999976543 667788888888876 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCc
Q 028362 162 SKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~~ 183 (210)
|+++.|++++|+++...+....
T Consensus 159 Ak~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 159 AKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999887653
No 89
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.98 E-value=6.3e-31 Score=193.58 Aligned_cols=177 Identities=30% Similarity=0.515 Sum_probs=146.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
.||+|+|.+|||||||++++..+.+...+.|+....+......++..+.+.+||+||++++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999999888778888876666677788888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHH-hccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 89 LVSRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
+++..+++.+ ..|...+ +... .+.|+++|+||+|+...+. ...++...+++..+. +++++||+++.
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (180)
T cd04137 82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----------VSTEEGKELAESWGA-AFLESSARENE 149 (180)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----------cCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 9999999998 4554444 4332 5789999999999975433 555667777777774 88999999999
Q ss_pred CHHHHHHHHHHHHhCCccchhhhhhcCCCeEEE
Q 028362 167 NVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN 199 (210)
Q Consensus 167 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 199 (210)
|++++|.++.+.+....... ..+.+.+|.+|
T Consensus 150 gv~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~ 180 (180)
T cd04137 150 NVEEAFELLIEEIEKVENPL--DPGQKKKCSIM 180 (180)
T ss_pred CHHHHHHHHHHHHHHhcCCC--CCCCCCCceeC
Confidence 99999999999888665433 23366788764
No 90
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.98 E-value=8.6e-31 Score=189.30 Aligned_cols=158 Identities=37% Similarity=0.612 Sum_probs=136.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||++++.+..+...+.|+.+.++ ...+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999998877778777655 345667788889999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
|+++++++..+ ..|+..+.... .+.|+++|+||.|+..... ...++...++...+. +++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (161)
T cd01861 81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKELNA-MFIETSAKAGH 148 (161)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEEeCCCCC
Confidence 99999999997 67887766544 4799999999999964433 677788888888875 89999999999
Q ss_pred CHHHHHHHHHHH
Q 028362 167 NVKAVFDAAIKV 178 (210)
Q Consensus 167 ~i~~~~~~i~~~ 178 (210)
|++++|+++.+.
T Consensus 149 ~v~~l~~~i~~~ 160 (161)
T cd01861 149 NVKELFRKIASA 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
No 91
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.98 E-value=2.9e-31 Score=195.46 Aligned_cols=161 Identities=16% Similarity=0.192 Sum_probs=124.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
++.+||+++|+++||||||++++..+.+. .+.||.+.++. . ++...+.+.+||+||+++++.+|..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45689999999999999999999988775 45777765543 2 23345889999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC----CcEEEEe
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG----ASYYIEC 160 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 160 (210)
|||+++++++.++...+...+.... +++|++||+||+|+... ...++......... ...++++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~l~l~~~~~~~~~~~~~ 158 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------MNAAEITDKLGLHSLRQRHWYIQST 158 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------------CCHHHHHHHhCccccCCCceEEEec
Confidence 9999999999988544444444332 68999999999999654 23333333221111 1245689
Q ss_pred ccCCCCCHHHHHHHHHHHHhCC
Q 028362 161 SSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
||++|+|++++|+|+.+.+.++
T Consensus 159 Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 159 CATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred cCCCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999988764
No 92
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=2.7e-30 Score=186.59 Aligned_cols=159 Identities=36% Similarity=0.651 Sum_probs=135.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||++++..+.+...+.++....+ .....+.+..+.+.+||++|++.+..+++.++++++++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999988776666664444 344666778889999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
|+++++++..+ ..|+..+.... .++|+++|+||+|+..... +..++...++...+. +++++|++++.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~~~~ 148 (162)
T cd04123 81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGA-KHFETSAKTGK 148 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999887 67887777655 4799999999999975543 566777888887776 78999999999
Q ss_pred CHHHHHHHHHHHH
Q 028362 167 NVKAVFDAAIKVV 179 (210)
Q Consensus 167 ~i~~~~~~i~~~~ 179 (210)
|++++++++.+.+
T Consensus 149 gi~~~~~~l~~~~ 161 (162)
T cd04123 149 GIEELFLSLAKRM 161 (162)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998865
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=2.3e-30 Score=187.45 Aligned_cols=160 Identities=34% Similarity=0.596 Sum_probs=138.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|++|||||||++++..+.+...+.++....+......++..+.+.+||+||++++...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999988888888877777777888899999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
++++.++.+. ..|...+... ..++|+++|+||+|+..... ....+...++..++. +++++||+++.
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T cd04139 81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQ 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence 9999999988 5665555554 25899999999999976332 566677778887776 89999999999
Q ss_pred CHHHHHHHHHHHHh
Q 028362 167 NVKAVFDAAIKVVI 180 (210)
Q Consensus 167 ~i~~~~~~i~~~~~ 180 (210)
|++++|+++.+.+.
T Consensus 149 gi~~l~~~l~~~~~ 162 (164)
T cd04139 149 NVEKAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998765
No 94
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=7.4e-31 Score=194.26 Aligned_cols=165 Identities=33% Similarity=0.605 Sum_probs=151.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
..+||+++|.+|||||+|..+|..+.|.+.+.||+++.|...+.+++..+.+.|+|++|+++|..+...++++++++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhc-cC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 87 FSLVSRASYENVLKKWIPELQH-YS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~-~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
|+++++.||+.+ ..+.+.+.+ .. .++|+++||||+|+...+. +..++++.++...+. +|+++||+.
T Consensus 82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~-~f~E~Sak~ 149 (196)
T KOG0395|consen 82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGC-AFIETSAKL 149 (196)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCC-cEEEeeccC
Confidence 999999999998 566666633 33 5789999999999988665 999999999999997 699999999
Q ss_pred CCCHHHHHHHHHHHHhCCc
Q 028362 165 QQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~~~~ 183 (210)
..+++++|..+++.+....
T Consensus 150 ~~~v~~~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 150 NYNVDEVFYELVREIRLPR 168 (196)
T ss_pred CcCHHHHHHHHHHHHHhhh
Confidence 9999999999999887643
No 95
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=4.5e-30 Score=185.60 Aligned_cols=157 Identities=32% Similarity=0.644 Sum_probs=136.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||+++|.++.+...+.|+.+.++. ..+.+.+..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 68999999999999999999999887777787776654 34556778899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|+++++++..+ ..|+..+.... .+.|+++|+||+|+.... ...++...++...+. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd01863 81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTR 147 (161)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCC
Confidence 99999999987 67888887664 589999999999997433 566788888888875 8999999999
Q ss_pred CCHHHHHHHHHHH
Q 028362 166 QNVKAVFDAAIKV 178 (210)
Q Consensus 166 ~~i~~~~~~i~~~ 178 (210)
.|++++++++.+.
T Consensus 148 ~gi~~~~~~~~~~ 160 (161)
T cd01863 148 DGVQQAFEELVEK 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998875
No 96
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=4e-31 Score=192.58 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=122.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
++.+||+++|++|||||||++++..+.+. .+.||.+.++. ... ...+.+.+||++|+++++.+|..++++++++|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45699999999999999999999987775 35677765543 222 245889999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH---c-CCcEEEEe
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ---I-GASYYIEC 160 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 160 (210)
|||++++.++.++...|.+.+.... +++|++||+||+|+... +..+++..+... . ...+++++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~ 150 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNWYVQPS 150 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcEEEEEe
Confidence 9999999999988544555555432 67999999999999653 345555554421 1 12367899
Q ss_pred ccCCCCCHHHHHHHHHH
Q 028362 161 SSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~ 177 (210)
||++|.|++++|+||.+
T Consensus 151 SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 151 CATSGDGLYEGLTWLSS 167 (168)
T ss_pred eCCCCCChHHHHHHHhc
Confidence 99999999999999864
No 97
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=5.1e-30 Score=186.43 Aligned_cols=164 Identities=27% Similarity=0.440 Sum_probs=129.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|++|||||||+++|..+.+...+ ++....+.....+++..+.+.+||++|++.++..+..++..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENV-PRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccC-CCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 48999999999999999999999886653 33333344445566788999999999999888777778899999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-CcEEEEeccCCCCC
Q 028362 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQN 167 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~ 167 (210)
++++.+++.+...|...+....++.|+++|+||+|+.+.... ....+++..++..++ ..+++++||+++.|
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 151 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AGLEEEMLPIMNEFREIETCVECSAKTLIN 151 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hHHHHHHHHHHHHHhcccEEEEeccccccC
Confidence 999999999756788888776678999999999999765320 001233333334433 24789999999999
Q ss_pred HHHHHHHHHHHHhC
Q 028362 168 VKAVFDAAIKVVIK 181 (210)
Q Consensus 168 i~~~~~~i~~~~~~ 181 (210)
++++|+.+...+.+
T Consensus 152 v~~lf~~~~~~~~~ 165 (166)
T cd01893 152 VSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988765
No 98
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=2.5e-30 Score=190.94 Aligned_cols=166 Identities=21% Similarity=0.300 Sum_probs=127.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEE-CCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
+.+||+++|++|||||||++++..+.+... .||.+... ...+.+ ++..+.+.+||++|+++++.+|..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998887654 56665443 223333 446789999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH--c---CCcEE
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--I---GASYY 157 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~ 157 (210)
+|+|++++.++..+ ..|+..+.... .++|+++|+||+|+... ...+++..+... . ...++
T Consensus 81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T cd04152 81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHV 147 (183)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEE
Confidence 99999999998887 56665554432 57999999999999643 233444444321 1 11367
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCCccch
Q 028362 158 IECSSKTQQNVKAVFDAAIKVVIKPPQKQ 186 (210)
Q Consensus 158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 186 (210)
+++||+++.|++++++++.+.+.+.....
T Consensus 148 ~~~SA~~~~gi~~l~~~l~~~l~~~~~~~ 176 (183)
T cd04152 148 QPACAIIGEGLQEGLEKLYEMILKRRKML 176 (183)
T ss_pred EEeecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999997554433
No 99
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.7e-30 Score=191.57 Aligned_cols=161 Identities=20% Similarity=0.242 Sum_probs=123.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
+..+||+++|++|||||||++++..+.+.. +.||.+..+. .+. ...+.+++||++|+++++.+|..+++++|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 456999999999999999999999887754 5677765543 232 345889999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEEEe
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIEC 160 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 160 (210)
|+|+++++++.+....+.+.+.... .++|++||+||.|+... ...++........ ...+++++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~~~~~~ 158 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA------------MSTTEVTEKLGLHSVRQRNWYIQGC 158 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC------------CCHHHHHHHhCCCcccCCcEEEEee
Confidence 9999999999988544555544322 57899999999999653 2222222211110 11256689
Q ss_pred ccCCCCCHHHHHHHHHHHHhCC
Q 028362 161 SSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
||++|.|++++|+|+.+.+.++
T Consensus 159 Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 159 CATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred eCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999887765
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2.9e-30 Score=189.29 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=121.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
++.+||+++|++|||||||++++..+.+. .+.||.+..+. .... ..+.+.+||+||+++++.+|..++++++++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 35699999999999999999999888774 46777765543 2223 45789999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEEEe
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIEC 160 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 160 (210)
|||+++++++++..+.|...+.... +++|++||+||+|+.+.. ..++........ ....++++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~ 154 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------------KAAEITEKLGLHSIRDRNWYIQPT 154 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------------CHHHHHHHhCccccCCCcEEEEEe
Confidence 9999999999988544444444432 679999999999996542 222222221111 12246689
Q ss_pred ccCCCCCHHHHHHHHHHHHh
Q 028362 161 SSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~~~~ 180 (210)
||++|.|++++|+|+.+.+.
T Consensus 155 Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 155 CATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred eCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999987653
No 101
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=3.2e-30 Score=188.02 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=123.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (210)
||+++|.+|||||||++++..+.+.. +.||.+..+. .. ....+.+.+||+||+++++..|..+++++|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TV--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EE--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999987654 6777755543 22 23457889999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHh-ccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-----CcEEEEecc
Q 028362 90 VSRASYENVLKKWIPELQ-HYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-----ASYYIECSS 162 (210)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~-~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa 162 (210)
++++++.++ ..|+..+. ... .+.|+++|+||+|+... +..+++..++...+ ...++++||
T Consensus 77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (169)
T cd04158 77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCDA 143 (169)
T ss_pred CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence 999999998 45555444 332 56899999999999643 45666666654322 125778999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028362 163 KTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~ 182 (210)
++|.|++++|+|+.+.+...
T Consensus 144 ~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 144 RSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999887654
No 102
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=2.2e-32 Score=183.15 Aligned_cols=159 Identities=33% Similarity=0.626 Sum_probs=143.1
Q ss_pred EEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEE-EEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362 12 VTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (210)
Q Consensus 12 ~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (210)
+++|++++|||+|+-|+..+.|- .+..+|.+.+|... +..+++.+++++||++||++|++....|++++|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 37899999999999999998875 45567888888554 66789999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH
Q 028362 90 VSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 168 (210)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (210)
.++.||++. +.|+..+..+. ..+.+.+++||+|+..++. +..++++.+++.|++ ||.++||++|.|+
T Consensus 81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v~~ddg~kla~~y~i-pfmetsaktg~nv 148 (192)
T KOG0083|consen 81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------VKRDDGEKLAEAYGI-PFMETSAKTGFNV 148 (192)
T ss_pred ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------cccchHHHHHHHHCC-CceeccccccccH
Confidence 999999998 89999999887 5778889999999987765 788899999999998 9999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 028362 169 KAVFDAAIKVVIKP 182 (210)
Q Consensus 169 ~~~~~~i~~~~~~~ 182 (210)
+-.|..+.+.+.+.
T Consensus 149 d~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 149 DLAFLAIAEELKKL 162 (192)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999888654
No 103
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=3.6e-29 Score=182.25 Aligned_cols=162 Identities=31% Similarity=0.593 Sum_probs=137.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
+..++|+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4669999999999999999999998888777777776544 335677888899999999999999998889999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..... +..+....+.+... .+++++||+
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~-~~~~~~Sa~ 152 (169)
T cd04114 85 LTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQD-MYYLETSAK 152 (169)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcC-CeEEEeeCC
Confidence 99999999999887 68888777655 4799999999999975543 55666677776666 489999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028362 164 TQQNVKAVFDAAIKVV 179 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~ 179 (210)
++.|++++|+++.+.+
T Consensus 153 ~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 153 ESDNVEKLFLDLACRL 168 (169)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 104
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=4.3e-30 Score=185.56 Aligned_cols=153 Identities=17% Similarity=0.229 Sum_probs=116.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|.+|||||||++++..+.+. .+.||.+..+. .+.. ..+.+.+||+||++++..+|..+++++|++|+|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 48999999999999999999988876 46777765442 2333 45889999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHH-HHHHHHH---cCCcEEEEeccC
Q 028362 89 LVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRKQ---IGASYYIECSSK 163 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~Sa~ 163 (210)
++++.++.++...|...+.... .+.|++|++||+|+.+.. ...+ ...+... .....++++||+
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~Sak 144 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM------------SAAEVTDKLGLHSLRNRNWYIQATCAT 144 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC------------CHHHHHHHhCccccCCCCEEEEEeeCC
Confidence 9999999988544555544332 578999999999996531 2222 2222110 112256789999
Q ss_pred CCCCHHHHHHHHHH
Q 028362 164 TQQNVKAVFDAAIK 177 (210)
Q Consensus 164 ~~~~i~~~~~~i~~ 177 (210)
+|.|++++|+||.+
T Consensus 145 ~g~gv~~~~~~l~~ 158 (159)
T cd04150 145 SGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999864
No 105
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=2.5e-29 Score=187.83 Aligned_cols=161 Identities=25% Similarity=0.409 Sum_probs=131.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (210)
||+++|++|||||||+++|..+.+...+.++........+.+.+..+.+.+||++|+..|..++..++.++|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999999887777777655555677788889999999999999998888899999999999999
Q ss_pred CChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH-HcCCcEEEEeccCCCC
Q 028362 90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-QIGASYYIECSSKTQQ 166 (210)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 166 (210)
+++.+++.+ ..|+..+.... .++|+++|+||.|+..... .+..+...+... ..+ .+++++||++|.
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---------~v~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 149 (198)
T cd04147 81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEER---------QVPAKDALSTVELDWN-CGFVETSAKDNE 149 (198)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccccccc---------cccHHHHHHHHHhhcC-CcEEEecCCCCC
Confidence 999999998 67776665543 4799999999999965311 134444444433 333 378999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 028362 167 NVKAVFDAAIKVVIK 181 (210)
Q Consensus 167 ~i~~~~~~i~~~~~~ 181 (210)
|++++|+++++.+..
T Consensus 150 gv~~l~~~l~~~~~~ 164 (198)
T cd04147 150 NVLEVFKELLRQANL 164 (198)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999998763
No 106
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1.9e-29 Score=181.72 Aligned_cols=157 Identities=34% Similarity=0.653 Sum_probs=135.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (210)
||+++|++|||||||++++..+.+...+.|+....+.......+..+.+++||+||++.+..++..+++.++++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999888888888887765565667777789999999999999988899999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 028362 90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN 167 (210)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (210)
++++++.++ ..|...+.... ...|+++|+||+|+..... ...+++..++..++. +++++||+++.|
T Consensus 81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 148 (160)
T cd00876 81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNIN 148 (160)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCC
Confidence 999999987 56665555544 4899999999999987443 677888888888874 899999999999
Q ss_pred HHHHHHHHHHH
Q 028362 168 VKAVFDAAIKV 178 (210)
Q Consensus 168 i~~~~~~i~~~ 178 (210)
++++|+++.+.
T Consensus 149 i~~l~~~l~~~ 159 (160)
T cd00876 149 IDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 107
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=7e-29 Score=187.71 Aligned_cols=168 Identities=27% Similarity=0.479 Sum_probs=142.0
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCcc
Q 028362 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (210)
Q Consensus 3 ~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 81 (210)
+.....+||+++|++|||||||++++..+.+...+.||.+.++.. .+..++..+.+.+||++|++++..++..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 455678999999999999999999999999988888998777643 4556788899999999999999999999999999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
++++|||++++.++..+ ..|+..+.....++|+++++||+|+.... ... ....+++..+. .++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~-~~~~~~~~~~~-~~~e~S 149 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKA-RQITFHRKKNL-QYYDIS 149 (215)
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcccc-----------CCH-HHHHHHHHcCC-EEEEEe
Confidence 99999999999999988 78888887666789999999999986432 222 23456666665 889999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCcc
Q 028362 162 SKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
|+++.|++++|.++++.+...+.
T Consensus 150 a~~~~~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 150 AKSNYNFEKPFLWLARRLTNDPN 172 (215)
T ss_pred CCCCCCHHHHHHHHHHHHhhccc
Confidence 99999999999999998876543
No 108
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=3e-29 Score=180.04 Aligned_cols=156 Identities=37% Similarity=0.745 Sum_probs=136.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+||+++|++|||||||++++.++.+...+.++....+. .....++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988877777766653 35666778899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
|+++++++..+ ..|+..+.... ...|+++|+||+|+..... ...++..+++...+. +++++||+++.
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~ 148 (159)
T cd00154 81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTGE 148 (159)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCCC
Confidence 99999999987 67988888776 6899999999999973332 577888888888765 89999999999
Q ss_pred CHHHHHHHHH
Q 028362 167 NVKAVFDAAI 176 (210)
Q Consensus 167 ~i~~~~~~i~ 176 (210)
|++++++++.
T Consensus 149 ~i~~~~~~i~ 158 (159)
T cd00154 149 NVEELFQSLA 158 (159)
T ss_pred CHHHHHHHHh
Confidence 9999999986
No 109
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1.8e-30 Score=188.41 Aligned_cols=153 Identities=17% Similarity=0.232 Sum_probs=123.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (210)
.|+++|++|||||||+++|..+.+...+.||.+..+ ..++...+.+.+||++|+++++.+|..+++++|++++|||+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 379999999999999999999988888888876542 23445568899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCH----HHHHHHHHHcCCcEEEEeccCC-
Q 028362 90 VSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT----AQGEELRKQIGASYYIECSSKT- 164 (210)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~- 164 (210)
+++.++.+. ..|+..+....+++|+++|+||+|+..... +.. ..+..++.+.+. +++++||++
T Consensus 78 t~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~ 145 (164)
T cd04162 78 ADSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDDD 145 (164)
T ss_pred CCHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecCC
Confidence 999999887 566666654447899999999999966532 111 223455555554 788888887
Q ss_pred -----CCCHHHHHHHHHH
Q 028362 165 -----QQNVKAVFDAAIK 177 (210)
Q Consensus 165 -----~~~i~~~~~~i~~ 177 (210)
++|++++|+.+++
T Consensus 146 ~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 146 GSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CChhHHHHHHHHHHHHhc
Confidence 9999999998864
No 110
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=171.88 Aligned_cols=165 Identities=30% Similarity=0.586 Sum_probs=149.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
+..+|.+++|+-|||||+|+..|...+|-.....|++..|.. .+.+.++.+++++||++||++|+.....+++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 456899999999999999999999999988888899888854 4678999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
.|||++.++.+..+ ..|+.-..... |+..+++++||.|+...++ +..+++..|+++.+. .|.++||+
T Consensus 89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~sak 156 (215)
T KOG0097|consen 89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASAK 156 (215)
T ss_pred EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEeccc
Confidence 99999999999998 78987766554 7888999999999998877 999999999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028362 164 TQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~ 182 (210)
+|.|+++.|-+...++...
T Consensus 157 tg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 157 TGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred ccCcHHHHHHHHHHHHHHh
Confidence 9999999998888777643
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=2e-28 Score=179.17 Aligned_cols=155 Identities=18% Similarity=0.246 Sum_probs=118.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
...+||+++|++|||||||++++....+ ..+.||.+..+ ....++ .+.+.+||+||++.++.+|..++++++++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~-~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI-KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 3568999999999999999999997754 34556655322 233344 4788999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHh-cc-CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEEEE
Q 028362 86 AFSLVSRASYENVLKKWIPELQ-HY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYYIE 159 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~-~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 159 (210)
|||++++.++.+. ..|+..+. .. ..++|+++|+||+|+... ...+++..+... ....++++
T Consensus 88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 154 (173)
T cd04154 88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGA------------LSEEEIREALELDKISSHHWRIQP 154 (173)
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccC------------CCHHHHHHHhCccccCCCceEEEe
Confidence 9999999999887 45554443 22 268999999999999653 234444444432 12348999
Q ss_pred eccCCCCCHHHHHHHHHH
Q 028362 160 CSSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~ 177 (210)
+||++|.|++++|+++++
T Consensus 155 ~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 155 CSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ccCCCCcCHHHHHHHHhc
Confidence 999999999999999864
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=2.7e-28 Score=176.29 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=114.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+|+++|++|||||||+++|..+. +...+.||.+.... .. ....+.+.+||+||+++++.+|..++++++++|+|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999875 35566677654332 12 2345788999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhcc----CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH---HHHc-CCcEEEEe
Q 028362 89 LVSRASYENVLKKWIPELQHY----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL---RKQI-GASYYIEC 160 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ 160 (210)
++++.++..+ ..|+..+... ..++|+++|+||+|+.... ..++.... .... ...+++++
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~ 144 (162)
T cd04157 78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPWHIFAS 144 (162)
T ss_pred CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceEEEEEe
Confidence 9999998876 5555554332 1479999999999996542 12222211 1101 11257899
Q ss_pred ccCCCCCHHHHHHHHHH
Q 028362 161 SSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~ 177 (210)
||+++.|++++|+++.+
T Consensus 145 Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 145 NALTGEGLDEGVQWLQA 161 (162)
T ss_pred eCCCCCchHHHHHHHhc
Confidence 99999999999999865
No 113
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=5.8e-28 Score=176.93 Aligned_cols=155 Identities=21% Similarity=0.276 Sum_probs=118.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.+.+||+++|++|||||||++++..+.+.. +.|+.+.++. ...++ .+.+.+||+||++.+...|..+++++|++++
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 356899999999999999999999888764 4666665542 23333 4788999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHH-HHHH----HHcCCcEEEE
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG-EELR----KQIGASYYIE 159 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~ 159 (210)
|+|+++++++......+...+.... .++|+++++||+|+... ...++. ..+. ...+ .++++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~-~~~~~ 155 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHT-WHIQG 155 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCc-eEEEe
Confidence 9999999999887444555554433 57999999999998653 222222 2221 1122 36899
Q ss_pred eccCCCCCHHHHHHHHHH
Q 028362 160 CSSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~ 177 (210)
+||+++.|++++|+++.+
T Consensus 156 ~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 156 CCALTGEGLPEGLDWIAS 173 (174)
T ss_pred cccCCCCCHHHHHHHHhc
Confidence 999999999999999864
No 114
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=6.6e-28 Score=179.72 Aligned_cols=150 Identities=23% Similarity=0.325 Sum_probs=120.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEE-----CCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVA-----EGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
+||+++|++|||||||++++..+.+.+.+.||.+..+... ..+ ++..+.+.+||++|+++|+.++..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999999888889987665432 333 3578999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhcc--------------------CCCCcEEEEeeCcccccccccccCCCCCCccCH
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHY--------------------SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT 142 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~ 142 (210)
+|+|||++++.+++++ ..|+..+... ..++|++|||||.|+.+.+.... ....
T Consensus 81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~------~~~~ 153 (202)
T cd04102 81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSG------NLVL 153 (202)
T ss_pred EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccch------HHHh
Confidence 9999999999999998 7998887652 14789999999999976532000 0122
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCC
Q 028362 143 AQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
.....++.+.++ +.++.++.+..
T Consensus 154 ~~~~~ia~~~~~-~~i~~~c~~~~ 176 (202)
T cd04102 154 TARGFVAEQGNA-EEINLNCTNGR 176 (202)
T ss_pred hHhhhHHHhcCC-ceEEEecCCcc
Confidence 335566788887 67777877543
No 115
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=1.2e-27 Score=175.32 Aligned_cols=159 Identities=21% Similarity=0.330 Sum_probs=126.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
..+.+||+++|++|+|||||++++..+.+.. ..||.+.... .+..++ +.+.+||++|+..++..|..++.+++++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~-~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE-EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE-EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc-eeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 3788999999999999999999999876543 4566654432 344444 67889999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH--c---CCcEEE
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--I---GASYYI 158 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~ 158 (210)
||+|.++++.+.++...+.+.+.... .++|++|++||+|+.+. ...+++...... + ....++
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------------~~~~~i~~~l~l~~l~~~~~~~v~ 154 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------------MSEEEIKEYLGLEKLKNKRPWSVF 154 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------------STHHHHHHHTTGGGTTSSSCEEEE
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------------chhhHHHhhhhhhhcccCCceEEE
Confidence 99999999999988666666666544 68999999999999765 344444443321 1 223577
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 028362 159 ECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
.+||.+|+|+.+.++||.+++
T Consensus 155 ~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 155 SCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEBTTTTBTHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHhcC
Confidence 899999999999999999875
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=1.9e-27 Score=176.51 Aligned_cols=157 Identities=17% Similarity=0.247 Sum_probs=121.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.+.+||+++|++|||||||++++.++.+. .+.||..... ..+.+++ +.+.+||+||+..++..|..+++.++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 56799999999999999999999988764 4566654432 2344454 678899999999999889999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc------------
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI------------ 152 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 152 (210)
|+|+++++++.+....+...+.... .+.|+++++||+|+... +..++...+....
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSLKV 160 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCcccccccccccccc
Confidence 9999999999877433444443332 57999999999999643 4555666555431
Q ss_pred ---CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 153 ---GASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 153 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
...+++++||+++.|++++|+|+.+.
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 12368999999999999999999875
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=1.9e-28 Score=178.29 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=117.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (210)
+|+++|++|||||||++++.++ +...+.||.+... ..+.. ..+.+++||+||++.++.+|..++++++++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999976 6667778876542 23333 347889999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-cEEEEeccCCC-
Q 028362 90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKTQ- 165 (210)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~- 165 (210)
+++.++.++ ..|+..+.... .++|+++|+||+|+.......+- .....+..++.+.+. .+++++||++|
T Consensus 77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i------~~~~~l~~~~~~~~~~~~~~~~Sa~~g~ 149 (167)
T cd04161 77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGADV------IEYLSLEKLVNENKSLCHIEPCSAIEGL 149 (167)
T ss_pred CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHH------HHhcCcccccCCCCceEEEEEeEceeCC
Confidence 999999987 56666555432 57999999999999765310000 000111223323332 36777999998
Q ss_pred -----CCHHHHHHHHHH
Q 028362 166 -----QNVKAVFDAAIK 177 (210)
Q Consensus 166 -----~~i~~~~~~i~~ 177 (210)
.|+++.|+|+..
T Consensus 150 ~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 150 GKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCccccCHHHHHHHHhc
Confidence 899999999974
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=1e-27 Score=172.86 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=113.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (210)
||+++|+++||||||++++..+.+.. +.|+.+.++. ... ...+.+.+||+||++.++.+|..+++.++++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 68999999999999999998877653 4566544432 222 3457889999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH-----HcCCcEEEEeccC
Q 028362 90 VSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYIECSSK 163 (210)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 163 (210)
+++.++......|...+.... .+.|+++|+||+|+.... ...+...... ..+ .+++++||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~ 143 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRT-WSIFKTSAI 143 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCc-EEEEEeecc
Confidence 999888776455555555433 579999999999996532 1222211111 111 368999999
Q ss_pred CCCCHHHHHHHHHH
Q 028362 164 TQQNVKAVFDAAIK 177 (210)
Q Consensus 164 ~~~~i~~~~~~i~~ 177 (210)
++.|++++|+++.+
T Consensus 144 ~~~gi~~l~~~l~~ 157 (158)
T cd04151 144 KGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999875
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=3.1e-27 Score=170.56 Aligned_cols=152 Identities=24% Similarity=0.305 Sum_probs=113.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (210)
+|+++|++|||||||+++|..+.+.. +.||.+..+. .+.. +..+.+.+||+||++.+...|..++.+++++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 68999999999999999999988754 3566654332 2222 3457899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH------HHHcCCcEEEEecc
Q 028362 90 VSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL------RKQIGASYYIECSS 162 (210)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa 162 (210)
+++.++......+...+.... .+.|+++|+||+|+... ....+.... +...+ .+++++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~~Sa 144 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA------------LTAEEITRRFKLKKYCSDRD-WYVQPCSA 144 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC------------cCHHHHHHHcCCcccCCCCc-EEEEeccc
Confidence 999988887433344444322 58999999999999643 122222211 11112 36889999
Q ss_pred CCCCCHHHHHHHHHH
Q 028362 163 KTQQNVKAVFDAAIK 177 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~ 177 (210)
++++|++++|+++.+
T Consensus 145 ~~~~gv~~~~~~i~~ 159 (160)
T cd04156 145 VTGEGLAEAFRKLAS 159 (160)
T ss_pred ccCCChHHHHHHHhc
Confidence 999999999999864
No 120
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=3.9e-27 Score=174.00 Aligned_cols=157 Identities=14% Similarity=0.187 Sum_probs=118.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
++.++|+++|.+|||||||++++.++.+.. +.||...... ...++ .+.+.+||+||+..++..|..++.+++++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSE-ELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccceE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 567999999999999999999999887643 3455443321 23333 3778899999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH-----------cC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-----------IG 153 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 153 (210)
|+|++++.++......+...+.... .++|+++|+||+|+... +..+++.+.... .+
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCCc
Confidence 9999999999887433444443322 57999999999999643 334444333211 12
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
...++++||++++|++++++|+.++
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 3458899999999999999999865
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=7.6e-27 Score=169.65 Aligned_cols=152 Identities=20% Similarity=0.309 Sum_probs=113.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC------CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKF------PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
+|+++|++|||||||++++..... ...+.||....+. .+.++ ...+.+||+||++.+..++..++..++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999986422 2334455544432 23334 47888999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhc-cC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc------CCc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQH-YS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI------GAS 155 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~-~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 155 (210)
++|+|+++++++... ..|+..+.. .. .++|+++|+||+|+... ...++...+.... ...
T Consensus 78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T cd04160 78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA------------LSVEEIKEVFQDKAEEIGRRDC 144 (167)
T ss_pred EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC------------CCHHHHHHHhccccccccCCce
Confidence 999999999888887 455444433 22 57999999999998654 3334444443321 123
Q ss_pred EEEEeccCCCCCHHHHHHHHHH
Q 028362 156 YYIECSSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~~ 177 (210)
+++++||++|.|++++++||.+
T Consensus 145 ~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 145 LVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEEeeCCCCcCHHHHHHHHhc
Confidence 7899999999999999999864
No 122
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=2.2e-26 Score=179.69 Aligned_cols=147 Identities=19% Similarity=0.313 Sum_probs=120.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEEC-------------CEEEEEEEEeCCCccccc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-------------GTTVNLGLWDTAGQEDYN 70 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~i~D~~G~~~~~ 70 (210)
....+||+|+|+.|||||||+++|..+.+...+.+|++.++. ..+.++ ++.+.+.|||++|+++|+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 346699999999999999999999999998888999987664 334443 357899999999999999
Q ss_pred ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-------------CCCcEEEEeeCcccccccccccCCCCC
Q 028362 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-------------PGVPVVLVGTKLDLREDKHYLADHPGL 137 (210)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~D~~~~~~~~~~~~~~ 137 (210)
.++..++++++++|+|||++++.+++++ ..|+..+.... .++|++|||||+|+..... ....
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~----~r~~ 172 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEG----TRGS 172 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccc----cccc
Confidence 9999999999999999999999999998 79999887652 2589999999999965321 0001
Q ss_pred CccCHHHHHHHHHHcCCcE
Q 028362 138 VPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (210)
..+..+++++++.+.+..+
T Consensus 173 s~~~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 173 SGNLVDAARQWVEKQGLLP 191 (334)
T ss_pred ccccHHHHHHHHHHcCCCc
Confidence 1146789999999987543
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.9e-26 Score=166.13 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=115.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (210)
||+++|.+|||||||++++.+..+ ..+.++.+.... ...+. .+.+.+||+||++.+...+..+++.++++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999998874 344555544332 23333 47889999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEEEEeccCC
Q 028362 90 VSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYYIECSSKT 164 (210)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~ 164 (210)
+++.++......+...+.... .+.|+++|+||+|+.... ..++....... ....+++++||++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 144 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRRWHIQPCSAVT 144 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCcEEEEEeeCCC
Confidence 999999987433333434332 689999999999997542 22233333221 1234899999999
Q ss_pred CCCHHHHHHHHHH
Q 028362 165 QQNVKAVFDAAIK 177 (210)
Q Consensus 165 ~~~i~~~~~~i~~ 177 (210)
|.|++++|+++..
T Consensus 145 ~~gv~~~~~~l~~ 157 (158)
T cd00878 145 GDGLDEGLDWLLQ 157 (158)
T ss_pred CCCHHHHHHHHhh
Confidence 9999999999875
No 124
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=6.1e-26 Score=157.22 Aligned_cols=162 Identities=18% Similarity=0.226 Sum_probs=126.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.+++||+++|..|+||||++++|.+.. .+...||.+.++. + ...+.+.+++||++||...++.|..||...|++|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik-t--l~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK-T--LEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE-E--EEecceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 468999999999999999999999766 3444566554432 2 23355889999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCH---HHHHHHHHHcCCcEEEEec
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTT---AQGEELRKQIGASYYIECS 161 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~S 161 (210)
|+|.+|+..+++....+-..+.... ...|+++++||.|+...-. .... .....++.... ++.+.||
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~---------~~~i~~~~~L~~l~ks~~-~~l~~cs 159 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS---------LEEISKALDLEELAKSHH-WRLVKCS 159 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC---------HHHHHHhhCHHHhccccC-ceEEEEe
Confidence 9999999999988666655555443 6799999999999985421 0111 22334443344 4889999
Q ss_pred cCCCCCHHHHHHHHHHHHhC
Q 028362 162 SKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~ 181 (210)
|.+|+++.+.+.|+.+.+.+
T Consensus 160 ~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 99999999999999998876
No 125
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.1e-26 Score=163.43 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=133.1
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
..++..+|+++|..++||||++.+|..++.... .||++..... +.+ +++.|++||++||+.++.+|.+|+++.+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~-v~y--kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET-VEY--KNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE-EEE--cceEEEEEecCCCcccccchhhhccCCcEE
Confidence 356889999999999999999999999987666 8888766442 223 369999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEE
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYI 158 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 158 (210)
|||+|.+|++.+.++.+++...+.... ...|+++.+||.|++.. .+..++.+..... ....+.
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a------------ls~~ei~~~L~l~~l~~~~w~iq 156 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA------------LSAAEITNKLGLHSLRSRNWHIQ 156 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc------------CCHHHHHhHhhhhccCCCCcEEe
Confidence 999999999999999777777777665 68999999999999876 3333333332222 223555
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.++|.+|+|+.|.++|+.+.+.+.
T Consensus 157 ~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 157 STCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred eccccccccHHHHHHHHHHHHhcc
Confidence 699999999999999999988654
No 126
>PTZ00099 rab6; Provisional
Probab=99.94 E-value=1.3e-25 Score=164.46 Aligned_cols=141 Identities=29% Similarity=0.500 Sum_probs=121.9
Q ss_pred CCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhcc
Q 028362 31 NKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY 109 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 109 (210)
+.|.+.+.||.+.++ ...+.+++..+.+.+||++|+++++.++..+++++|++|+|||++++.+|+.+ ..|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 457778899998776 44577889999999999999999999999999999999999999999999998 6888877654
Q ss_pred C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 110 S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 110 ~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
. +++|++||+||+|+..... +..+++..++..++. .++++||++|.|++++|+++++.+....
T Consensus 82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 4 6799999999999975443 677888888888876 7899999999999999999999986644
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=1.6e-25 Score=160.69 Aligned_cols=152 Identities=26% Similarity=0.341 Sum_probs=116.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECC
Q 028362 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV 90 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (210)
|+++|++|||||||++++.+..+...+.|+.+..+.. ....+ +.+.+||+||++.++..+..++..+|++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 7999999999999999999999988888888665442 33333 78999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH----HcCCcEEEEeccCCC
Q 028362 91 SRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK----QIGASYYIECSSKTQ 165 (210)
Q Consensus 91 ~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~ 165 (210)
++.++......+...+.... .++|+++|+||+|+.... ...+...... .....+++++|++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 146 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL------------SVDELIEQMNLKSITDREVSCYSISCKEK 146 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc------------CHHHHHHHhCcccccCCceEEEEEEeccC
Confidence 99988876433444443322 578999999999986542 1111111111 011247889999999
Q ss_pred CCHHHHHHHHHH
Q 028362 166 QNVKAVFDAAIK 177 (210)
Q Consensus 166 ~~i~~~~~~i~~ 177 (210)
.|++++++++.+
T Consensus 147 ~gi~~l~~~l~~ 158 (159)
T cd04159 147 TNIDIVLDWLIK 158 (159)
T ss_pred CChHHHHHHHhh
Confidence 999999999875
No 128
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=7e-25 Score=166.18 Aligned_cols=178 Identities=30% Similarity=0.501 Sum_probs=138.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
..+||+++|++|||||||+++|..+.+...+.++.+..+.. .....+..+.+.+||++|+++|+.++..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999999989998766644 34444458899999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCC--CccCHHHHHHHHHHc--CCcEEEEe
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQI--GASYYIEC 160 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~ 160 (210)
|||.++..++.+....|...+.... .+.|+++++||+|+.........-... ............... ....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999997777777799999988877 479999999999998874311100000 012222222222222 12248899
Q ss_pred ccC--CCCCHHHHHHHHHHHHhCCcc
Q 028362 161 SSK--TQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 161 Sa~--~~~~i~~~~~~i~~~~~~~~~ 184 (210)
|++ ++.+++++|.++...+.....
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 999 999999999999998876543
No 129
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.93 E-value=2.3e-27 Score=166.74 Aligned_cols=165 Identities=34% Similarity=0.501 Sum_probs=148.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
...-+|++++|..+|||||+++++..+-|...+..+++.++.. .+.+.+..+.+.+||++||++|..+...|+++|.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 3466999999999999999999999999999999999887743 456677778888999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
++||+.+|+.||+.. ..|.+.++....++|.++|-||+|+.+... +...+.+.++..++. .++.+|++
T Consensus 97 vLVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvk 164 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVK 164 (246)
T ss_pred EEEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhh
Confidence 999999999999997 799999998889999999999999988876 788899999998885 78899999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028362 164 TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~ 181 (210)
...|+..+|..+++++..
T Consensus 165 ed~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 165 EDFNVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 999999999999887754
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=4.2e-25 Score=162.29 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=111.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC-------CCCCCCCce------eeeeeE---EEEE---CCEEEEEEEEeCCCccccc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTV------FDNFSA---NVVA---EGTTVNLGLWDTAGQEDYN 70 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~-------~~~~~~~~~------~~~~~~---~~~~---~~~~~~~~i~D~~G~~~~~ 70 (210)
+|+++|.++||||||+++|.... +...+.++. +.++.. ...+ ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998632 222222221 112211 1122 5677899999999999999
Q ss_pred ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (210)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
..+..+++.+|++|+|+|++++.+.... ..|..... .++|+++|+||+|+.... ......++++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~ 145 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD------------PERVKQQIED 145 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC------------HHHHHHHHHH
Confidence 9999999999999999999987666554 44443322 468999999999986431 1223345555
Q ss_pred HcCCc--EEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 151 QIGAS--YYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 151 ~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
.++.. +++++||++|.|++++|+++.+.+.
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 55542 4889999999999999999988753
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=5.8e-25 Score=160.67 Aligned_cols=154 Identities=21% Similarity=0.319 Sum_probs=114.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
..+.++|+++|++|||||||++++.+..+. .+.|+.+..+. .+...+ ..+.+||++|+..+...+..+++.+++++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~-~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK-TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 345799999999999999999999987653 34555543322 233444 67888999999998888888899999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-------cE
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SY 156 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 156 (210)
+|+|+++..++......+...+.... .++|+++++||+|+.... ..++ +....+. .+
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~---i~~~l~~~~~~~~~~~ 151 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA------------PAEE---IAEALNLHDLRDRTWH 151 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC------------CHHH---HHHHcCCcccCCCeEE
Confidence 99999999888877444444444332 579999999999986532 1222 2222221 24
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q 028362 157 YIECSSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~ 177 (210)
++++||+++.|++++|+|+.+
T Consensus 152 ~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 152 IQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEeECCCCCCHHHHHHHHhc
Confidence 678999999999999999975
No 132
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=1.5e-24 Score=157.72 Aligned_cols=155 Identities=20% Similarity=0.185 Sum_probs=105.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc----------cccc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP----------LSYR 78 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~----------~~~~ 78 (210)
.+|+++|.+|||||||+++|.+..+.....+......... ......+.+++|||||+.... .+. ....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVG-HFDYKYLRWQVIDTPGLLDRP-LEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEE-EEccCceEEEEEECCCcCCcc-ccCCchHHHHHHHHHHh
Confidence 3799999999999999999998876432222111111111 112234789999999984321 111 0112
Q ss_pred CccEEEEEEECCChhHH--HHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 79 GADVFVLAFSLVSRASY--ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 79 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
.+|++++|+|++++.++ +.. ..|+..+.....+.|+++|+||+|+..... + ....++....+ .+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~--~~~~~~~~~~~-~~ 144 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------L--SEIEEEEELEG-EE 144 (168)
T ss_pred ccCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------H--HHHHHhhhhcc-Cc
Confidence 36899999999987653 443 467777765545899999999999965432 1 12444444433 48
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
++++||+++.|++++|+++.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 145 VLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred eEEEEecccCCHHHHHHHHHHHh
Confidence 89999999999999999998876
No 133
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=1.6e-25 Score=158.59 Aligned_cols=135 Identities=27% Similarity=0.289 Sum_probs=101.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc-----cccccCcccccCccEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFV 84 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~~~~i 84 (210)
||+++|++|||||||+++|.++.+. +.+|....+ .. .+||+||+. .++.+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987652 334432222 11 579999983 3444433 478999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
+|||++++.++.. ..|...+ ..|+++|+||+|+.+.. ...+++.++++..+..+++++||++
T Consensus 68 lv~d~~~~~s~~~--~~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 68 LVQSATDPESRFP--PGFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred EEecCCCCCcCCC--hhHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCC
Confidence 9999999998765 2454432 24999999999996532 4566777778777765789999999
Q ss_pred CCCHHHHHHHHH
Q 028362 165 QQNVKAVFDAAI 176 (210)
Q Consensus 165 ~~~i~~~~~~i~ 176 (210)
+.|++++|+++.
T Consensus 130 ~~gi~~l~~~l~ 141 (142)
T TIGR02528 130 EQGLEALVDYLN 141 (142)
T ss_pred CCCHHHHHHHHh
Confidence 999999999874
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=3.6e-24 Score=153.27 Aligned_cols=157 Identities=35% Similarity=0.522 Sum_probs=122.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
.+||+++|.+|+|||||++++....+...+.++....+... +..++..+.+.+||+||+..+..++..+++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887777777766655443 55677778899999999999998888889999999999
Q ss_pred EECCCh-hHHHHHHHHHHHHHhccCC-CCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 87 FSLVSR-ASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 87 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
+|+... .++......|...+..... +.|+++++||+|+.... ............+..+++++||++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~sa~~ 148 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK------------LKTHVAFLFAKLNGEPIIPLSAET 148 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch------------hhHHHHHHHhhccCCceEEeecCC
Confidence 999877 6666654456555555443 88999999999996542 222333333444445799999999
Q ss_pred CCCHHHHHHHHH
Q 028362 165 QQNVKAVFDAAI 176 (210)
Q Consensus 165 ~~~i~~~~~~i~ 176 (210)
+.|++++++++.
T Consensus 149 ~~gv~~~~~~l~ 160 (161)
T TIGR00231 149 GKNIDSAFKIVE 160 (161)
T ss_pred CCCHHHHHHHhh
Confidence 999999998863
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=1.3e-24 Score=158.35 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=107.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeeeEEEEECCEEEEEEEEeCCCccc----ccccCccc---ccCc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPLS---YRGA 80 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~ 80 (210)
+|+++|.+|||||||+++|.+........| +...... ...+.+ ...+.+||+||+.+ ++.+...+ +..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~-~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLG-VVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcce-EEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 589999999999999999997543211111 1111111 122222 24788999999742 22233333 3459
Q ss_pred cEEEEEEECCCh-hHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 81 DVFVLAFSLVSR-ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 81 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
|++++|+|++++ .+++.. ..|.+.+.... ..+|+++|+||+|+.+.. ........+.......+
T Consensus 80 d~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~ 147 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEE-----------ELFELLKELLKELWGKP 147 (170)
T ss_pred CEEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCch-----------hhHHHHHHHHhhCCCCC
Confidence 999999999998 788776 67877776553 368999999999996653 23344555555532347
Q ss_pred EEEeccCCCCCHHHHHHHHHHH
Q 028362 157 YIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
++++||+++.|++++|+++.+.
T Consensus 148 ~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 148 VFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 8999999999999999999865
No 136
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.92 E-value=1.3e-25 Score=152.95 Aligned_cols=155 Identities=23% Similarity=0.336 Sum_probs=128.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
..+.+.++|..++|||||+|....+.+.+.-.||.+..... +....+.+.+||+|||++|+++|+.|++.+++++||
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 46789999999999999999999998888888888765432 344557788899999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-------cEEE
Q 028362 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SYYI 158 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 158 (210)
+|+++++.+.-...++.+.+.... ..+|++++|||.|+++.- ... .+..+++. ..++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL------------~~~---~li~rmgL~sitdREvcC~ 160 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL------------SKI---ALIERMGLSSITDREVCCF 160 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc------------cHH---HHHHHhCccccccceEEEE
Confidence 999999988888778888888776 799999999999998762 222 12222221 2567
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 028362 159 ECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
.+|+++..||+.+.+|+++.-
T Consensus 161 siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 161 SISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEcCCccHHHHHHHHHHHh
Confidence 899999999999999998754
No 137
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.9e-24 Score=145.25 Aligned_cols=160 Identities=16% Similarity=0.213 Sum_probs=132.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
..++++|+++|..++||||++.+|..+.. ....||++.... ++..+++.|.+||++|++..+.+|.+|+....++|
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve---tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE---EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 35689999999999999999999998864 344677765543 24446789999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEEE
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIE 159 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 159 (210)
||+|..++..++++.+++...+.+.. .+.|+++.+||.|++.. ...+++..+.+.- ..+...+
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A------------~~pqei~d~leLe~~r~~~W~vqp 157 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA------------MKPQEIQDKLELERIRDRNWYVQP 157 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc------------cCHHHHHHHhccccccCCccEeec
Confidence 99999999999999888999988776 78999999999999887 3455555554422 2234567
Q ss_pred eccCCCCCHHHHHHHHHHHHh
Q 028362 160 CSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
++|.+++|+.|-|.|+.+.+.
T Consensus 158 ~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 158 SCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cccccchhHHHHHHHHHhhcc
Confidence 999999999999999988764
No 138
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=8.3e-24 Score=168.59 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=111.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCc-eeeeeeEEEEECCEEEEEEEEeCCCcccc----cccCc---ccccC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPT-VFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRP---LSYRG 79 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~---~~~~~ 79 (210)
..|+|+|.||||||||+++++..+..- .+..| ...... .+.+. ....+++||+||..+- ..+.. ..++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G-~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLG-VVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEE-EEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 368999999999999999999765322 22212 222111 12221 2346889999997431 12222 24557
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
++++++|+|+++.++++.. ..|...+..+. .++|+++|+||+|+.+... +..+....+....+. +
T Consensus 237 a~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----------~~~~~~~~~~~~~~~-~ 304 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE----------EREKRAALELAALGG-P 304 (335)
T ss_pred cCEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh----------HHHHHHHHHHHhcCC-C
Confidence 9999999999988777776 78888887764 3789999999999975432 233344444455554 7
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
++++||++++|++++++++.+.+..
T Consensus 305 i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 305 VFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999988764
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.91 E-value=8e-24 Score=153.05 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=101.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC---CCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.|+++|.+|||||||+++|.+. .+...+.++...... ......+ ...+.+||+||+++|......+++++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999999963 233332232222221 1233331 4578999999999887666667889999999
Q ss_pred EEECCC---hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc--CCcEEEEe
Q 028362 86 AFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI--GASYYIEC 160 (210)
Q Consensus 86 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 160 (210)
|+|+++ +++...+ ..+... ...|+++|+||+|+..... .....++..+..... ...+++++
T Consensus 81 V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (164)
T cd04171 81 VVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADAPIFPV 146 (164)
T ss_pred EEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCCcEEEE
Confidence 999987 3333322 122221 2249999999999965321 001223444444432 23489999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 028362 161 SSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~ 177 (210)
||+++.|++++++.+..
T Consensus 147 Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGEGIEELKEYLDE 163 (164)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999988754
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.91 E-value=1.1e-23 Score=158.04 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=107.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeeeeEEEEECCEEEEEEEEeCCCcccc---------cccCcc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPL 75 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~ 75 (210)
..++|+|+|++|||||||++++.+..+.... .++.... ...+..++. ..+.+||+||..+. ...+ .
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPT-TRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccce-eEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 4589999999999999999999987643222 2222211 222333332 36888999997332 1111 1
Q ss_pred cccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (210)
.+.++|++++|+|++++.+.... ..|.+.+.... .++|+++|+||+|+..... . .......+
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~-----~~~~~~~~- 179 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------L-----EERLEAGR- 179 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------H-----HHHhhcCC-
Confidence 35689999999999998887765 56777766554 5789999999999965432 1 12333333
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 155 SYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 155 ~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
.+++++||+++.|++++++++.+.+
T Consensus 180 ~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 180 PDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CceEEEEcCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999997653
No 141
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.91 E-value=8.3e-24 Score=145.43 Aligned_cols=173 Identities=26% Similarity=0.494 Sum_probs=143.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
+..-.+||.++|++.+|||||+-+++++.+.+.+..+.+.++ .+++.+.+.++.|.+||++|++++..+.+....++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 334569999999999999999999999999887777877776 5578899999999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
++|+||++.++++..+ ..|.+.........--|+||+|.|+.-.-. ++..+.....+..+++-+++ +.+.+|+
T Consensus 96 IlFmFDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~fi~lp-----~e~Q~~I~~qar~YAk~mnA-sL~F~St 168 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDLFIDLP-----PELQETISRQARKYAKVMNA-SLFFCST 168 (205)
T ss_pred EEEEEecCchHHHHHH-HHHHHHHhccCCccceEEeccchHhhhcCC-----HHHHHHHHHHHHHHHHHhCC-cEEEeec
Confidence 9999999999999998 799888777664333457899999754321 11112344567788888887 7778999
Q ss_pred CCCCCHHHHHHHHHHHHhCCc
Q 028362 163 KTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~~ 183 (210)
....|+.++|..+..++....
T Consensus 169 s~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 169 SHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred cccccHHHHHHHHHHHHhCCc
Confidence 999999999999999888754
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.90 E-value=1e-22 Score=144.44 Aligned_cols=153 Identities=38% Similarity=0.671 Sum_probs=115.7
Q ss_pred EECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCC
Q 028362 13 TVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS 91 (210)
Q Consensus 13 llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (210)
++|++|+|||||++++..... .....++....+............+.+||+||+..+...+...++.++++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998776 4454555533334455566778899999999999888888888999999999999999
Q ss_pred hhHHHHHHHHH--HHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHH
Q 028362 92 RASYENVLKKW--IPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 169 (210)
Q Consensus 92 ~~s~~~~~~~~--~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 169 (210)
+.+.... ..| .........+.|+++|+||+|+..... ................+++++|+.++.|++
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 149 (157)
T cd00882 81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELGVPYFETSAKTGENVE 149 (157)
T ss_pred HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcCCcEEEEecCCCCChH
Confidence 9988887 444 223333347899999999999976542 111111222333344589999999999999
Q ss_pred HHHHHHH
Q 028362 170 AVFDAAI 176 (210)
Q Consensus 170 ~~~~~i~ 176 (210)
++++++.
T Consensus 150 ~~~~~l~ 156 (157)
T cd00882 150 ELFEELA 156 (157)
T ss_pred HHHHHHh
Confidence 9999885
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=1.1e-22 Score=147.81 Aligned_cols=158 Identities=18% Similarity=0.206 Sum_probs=107.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEEC-CEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
.|+++|.+|+|||||+++|..+.+.....+........ ..... +..+.+.+||+||++.|..++...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999887765544444333321 22222 23578899999999999888888899999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH-----cCCcEEEEecc
Q 028362 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-----IGASYYIECSS 162 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 162 (210)
|+++....... ..+..+.. .++|+++|+||+|+..... .........+... ....+++++||
T Consensus 82 d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T cd01887 82 AADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNANP---------ERVKNELSELGLQGEDEWGGDVQIVPTSA 148 (168)
T ss_pred ECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccccH---------HHHHHHHHHhhccccccccCcCcEEEeec
Confidence 99875322211 12222322 4689999999999864321 0011111111111 11247899999
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 028362 163 KTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~ 180 (210)
+++.|++++++++.+...
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 149 KTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999987653
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=156.42 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=103.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCC-----------cccccccCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG-----------QEDYNRLRP 74 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~ 74 (210)
.+.++|+++|.+|||||||+++|.+..+...+.|..... ....... .+.+||+|| ++.++..+.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 467899999999999999999999887665555544222 1112222 578999999 456666655
Q ss_pred cccc----CccEEEEEEECCChhHHH---------HHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccC
Q 028362 75 LSYR----GADVFVLAFSLVSRASYE---------NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT 141 (210)
Q Consensus 75 ~~~~----~~~~~i~v~d~~~~~s~~---------~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~ 141 (210)
.++. .++++++|+|.++...+. .....+...+.. .++|+++|+||+|+.+..
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~------------- 146 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR------------- 146 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-------------
Confidence 5554 356778888875432210 001122333332 479999999999995431
Q ss_pred HHHHHHHHHHcCC--------cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 142 TAQGEELRKQIGA--------SYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 142 ~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.+...+++..++. .+++++||++| |++++++++.+.+...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 147 DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 2234455555553 14789999999 9999999999887543
No 145
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=7.5e-23 Score=140.58 Aligned_cols=114 Identities=29% Similarity=0.526 Sum_probs=88.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
||+|+|++|||||||+++|.+..+. ..+.++....+. ...........+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988875 122222233332 2455677777799999999999988888889999999999
Q ss_pred EECCChhHHHHHH--HHHHHHHhccCCCCcEEEEeeCcc
Q 028362 87 FSLVSRASYENVL--KKWIPELQHYSPGVPVVLVGTKLD 123 (210)
Q Consensus 87 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~D 123 (210)
||++++++++.+. ..|+..+.....++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999999873 235667766667899999999998
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=3e-22 Score=144.00 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=104.5
Q ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccccc------Ccccc--cCccEE
Q 028362 13 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF 83 (210)
Q Consensus 13 llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~~ 83 (210)
|+|.+|||||||++++.+..+.....+...... ...+.+++ ..+.+|||||+..+... +..++ .++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998764443334332222 33444554 46889999999877643 34445 489999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
++|+|+++++... .+...+.. .++|+++|+||+|+.+... . ......+...++. +++++||.
T Consensus 79 i~v~d~~~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~----------~-~~~~~~~~~~~~~-~~~~iSa~ 140 (158)
T cd01879 79 VNVVDATNLERNL----YLTLQLLE--LGLPVVVALNMIDEAEKRG----------I-KIDLDKLSELLGV-PVVPTSAR 140 (158)
T ss_pred EEEeeCCcchhHH----HHHHHHHH--cCCCEEEEEehhhhccccc----------c-hhhHHHHHHhhCC-CeEEEEcc
Confidence 9999998865432 23223322 3689999999999976532 2 2234566666675 88999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028362 164 TQQNVKAVFDAAIKVV 179 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~ 179 (210)
++.|++++++++.+.+
T Consensus 141 ~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 141 KGEGIDELKDAIAELA 156 (158)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 147
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=2.2e-22 Score=157.07 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=107.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccc-c-------CcccccC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-L-------RPLSYRG 79 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~-------~~~~~~~ 79 (210)
+|+++|.+|||||||+|+|.+..+.. ....|+..... .+...+ ...+.+|||||...... + ....+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999886532 22223322222 222222 24688999999754321 1 2345788
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.... ...+....+....+..++++
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~--~~~p~ilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~v~~ 143 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQN--LKRPVVLTRNKLDNKFKD-----------KLLPLIDKYAILEDFKDIVP 143 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHh--cCCCEEEEEECeeCCCHH-----------HHHHHHHHHHhhcCCCceEE
Confidence 99999999999876653 334444443 368999999999996432 23344555555555557899
Q ss_pred eccCCCCCHHHHHHHHHHHHhCC
Q 028362 160 CSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
+||++|.|++++++++.+.+...
T Consensus 144 iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 144 ISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred EecCCCCCHHHHHHHHHHhCCCC
Confidence 99999999999999999887553
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=1.9e-22 Score=162.02 Aligned_cols=152 Identities=19% Similarity=0.225 Sum_probs=105.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeeeEEEEECCEEEEEEEEeCCCcc---------cccccCccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE---------DYNRLRPLS 76 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 76 (210)
..++|+++|.+|||||||+|+|.+..... ....++.+.....+.+.+ ...+.+|||+|.. .|+..+. .
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tle-~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATLE-E 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHHH-H
Confidence 44899999999999999999999876432 222222222333444432 2467889999972 2333222 4
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
+.++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+..... + ..... +..
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----------v-----~~~~~--~~~ 327 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----------I-----ERLEE--GYP 327 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh----------H-----HHHHh--CCC
Confidence 7789999999999999877665 55666665544 4789999999999964321 1 11111 123
Q ss_pred EEEEeccCCCCCHHHHHHHHHHH
Q 028362 156 YYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
+++++||+++.|++++++++.+.
T Consensus 328 ~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 328 EAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CEEEEEccCCCCHHHHHHHHHhh
Confidence 57899999999999999998764
No 149
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=3.5e-22 Score=160.16 Aligned_cols=159 Identities=14% Similarity=0.220 Sum_probs=108.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeeeEEEEECCEEEEEEEEeCCCccc-ccccCc-------
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRP------- 74 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~------- 74 (210)
..+.++|+++|.+|||||||+|+|.+..+.. ....++.......+..++ ..+.+|||||+.+ +..+..
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 4567899999999999999999999887642 111122222222344444 4678999999843 322221
Q ss_pred ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-
Q 028362 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG- 153 (210)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (210)
..+.++|++++|+|..+ ++......|++.+... +.|+++|+||+|+... ...++.+++....
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~~~ 189 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTENHP 189 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhcCC
Confidence 23678999999999765 3444434556555442 4678899999998532 2344555555443
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
..+++++||++|.|++++++++.+.+...
T Consensus 190 ~~~i~~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 190 DSLLFPISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred CcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence 34789999999999999999999877643
No 150
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.89 E-value=3.5e-22 Score=159.16 Aligned_cols=156 Identities=20% Similarity=0.218 Sum_probs=108.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCC-ceeeeeeEEEEECCEEEEEEEEeCCCccccc----ccCccc---ccC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDYN----RLRPLS---YRG 79 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~---~~~ 79 (210)
..|+|+|.++||||||++++....... .+.. |...... .+.++ ....+++||+||..+.. .+...+ +..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig-~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLG-VVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEE-EEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 468999999999999999999765322 2111 2111111 12222 23678899999975321 222233 456
Q ss_pred ccEEEEEEECCCh---hHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362 80 ADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (210)
Q Consensus 80 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
++++++|+|+++. ..++.. ..|.+.+..+. .+.|+++|+||+|+.... ...+..+.+++.++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-----------~~~~~~~~l~~~~~ 303 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-----------ELAELLKELKKALG 303 (329)
T ss_pred hCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH-----------HHHHHHHHHHHHcC
Confidence 9999999999976 556665 67777666553 478999999999996543 23344555666666
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
. +++++||++++|++++++++.+.+
T Consensus 304 ~-~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 304 K-PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred C-cEEEEEccCCcCHHHHHHHHHHHh
Confidence 4 789999999999999999998764
No 151
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=7.5e-22 Score=141.59 Aligned_cols=147 Identities=20% Similarity=0.218 Sum_probs=102.0
Q ss_pred EEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccc--------cCcccccCcc
Q 028362 12 VTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYRGAD 81 (210)
Q Consensus 12 ~llG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~~ 81 (210)
+++|.+|||||||++++.... +.....++...........++ +.+.+||+||...+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999764 223333333333333344444 6788999999987644 3334678899
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
++++|+|..++.+.... .+...+.. ...|+++|+||+|+..... . .......+..+++++|
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~--~~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~S 139 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRK--SKKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPIS 139 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHh--cCCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEe
Confidence 99999999876544332 23333333 2589999999999976432 1 2223345554678999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028362 162 SKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~ 179 (210)
++++.|++++++++++.+
T Consensus 140 a~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 140 AEHGRGIGDLLDAILELL 157 (157)
T ss_pred cccCCCHHHHHHHHHhhC
Confidence 999999999999998753
No 152
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.4e-23 Score=143.63 Aligned_cols=164 Identities=21% Similarity=0.263 Sum_probs=125.8
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCC-------CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLS 76 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 76 (210)
..+..+.|+|+|..++|||||+.+..... ......||.+..... +.+.+ ..+.+||.+||+..+++|..|
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~-i~v~~--~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGT-IEVCN--APLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecc-eeecc--ceeEEEEcCChHHHHHHHHHH
Confidence 44567899999999999999999887421 123445666665442 33343 567779999999999999999
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH---Hc
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK---QI 152 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 152 (210)
|..++++|+++|+++++.++.....+-..+.+-. .++|+++.+||.|+.+.. ...++..... ..
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~------------~~~El~~~~~~~e~~ 157 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM------------EAAELDGVFGLAELI 157 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh------------hHHHHHHHhhhhhhc
Confidence 9999999999999999999887544544444443 689999999999998763 3444443333 22
Q ss_pred --CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 153 --GASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 153 --~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
...++.++||.+|+||++...|++..+.+.
T Consensus 158 ~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 158 PRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 234788999999999999999999998876
No 153
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.88 E-value=7.9e-21 Score=130.49 Aligned_cols=167 Identities=26% Similarity=0.331 Sum_probs=138.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEE-ECCEEEEEEEEeCCCcccc-cccCcccccCccE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDY-NRLRPLSYRGADV 82 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~ 82 (210)
+.-||+++|..+||||+|+.++.-+.. ..+..||+++.|...+. .++..-.+.++||.|...+ ..+..+|+.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 567999999999999999999996553 34567888877765543 3456678899999998777 5677789999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
+++|||..|++||+.+ +.+...+.... ..+|+++++||+|+.+... +..+.+..|++.-.+ ..+++
T Consensus 88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----------vd~d~A~~Wa~rEkv-kl~eV 155 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----------VDMDVAQIWAKREKV-KLWEV 155 (198)
T ss_pred EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh----------cCHHHHHHHHhhhhe-eEEEE
Confidence 9999999999999987 55555665554 5799999999999976665 889999999998886 77899
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCccc
Q 028362 161 SSKTQQNVKAVFDAAIKVVIKPPQK 185 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~~~~~~~~~ 185 (210)
++.+...+-+.|..+...+..++.+
T Consensus 156 ta~dR~sL~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 156 TAMDRPSLYEPFTYLASRLHQPQSK 180 (198)
T ss_pred EeccchhhhhHHHHHHHhccCCccc
Confidence 9999999999999999998877554
No 154
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.88 E-value=2.2e-21 Score=140.16 Aligned_cols=158 Identities=17% Similarity=0.125 Sum_probs=104.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccc--------cCccccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYR 78 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 78 (210)
...+|+++|++|+|||||++++.+...........................+.+||+||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999775432111111111111122233346788899999765432 2233477
Q ss_pred CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
.+|++++|+|++++.+- ....+.+.+... +.|+++|+||+|+..... ...+....+....+..+++
T Consensus 82 ~~d~i~~v~d~~~~~~~--~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~ 147 (168)
T cd04163 82 DVDLVLFVVDASEPIGE--GDEFILELLKKS--KTPVILVLNKIDLVKDKE----------DLLPLLEKLKELGPFAEIF 147 (168)
T ss_pred hCCEEEEEEECCCccCc--hHHHHHHHHHHh--CCCEEEEEEchhccccHH----------HHHHHHHHHHhccCCCceE
Confidence 89999999999987221 112333444332 589999999999974322 2344445555555456889
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 028362 159 ECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~ 178 (210)
++|++++.|++++++++.+.
T Consensus 148 ~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 148 PISALKGENVDELLEEIVKY 167 (168)
T ss_pred EEEeccCCChHHHHHHHHhh
Confidence 99999999999999998764
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.87 E-value=3.1e-21 Score=159.15 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=110.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC--------ccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 76 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 76 (210)
..++|+++|++|||||||+|+|.+.. +...+..++.+.+...+.+++ +.+.+|||||+.++...+ ..+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 45899999999999999999999864 334444454444455566666 456789999987654332 346
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
++++|++++|+|++++.+.+.. |+..+.. .+.|+++|+||+|+... ....+++..+. +
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~----------------~~~~~~~~~~~-~ 337 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN----------------SLEFFVSSKVL-N 337 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc----------------chhhhhhhcCC-c
Confidence 7899999999999998876543 5544432 46899999999999532 11233445554 6
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
++.+||++ .||+++|+.+.+.+...
T Consensus 338 ~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 338 SSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred eEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 78999998 69999999998887654
No 156
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=1.2e-21 Score=144.77 Aligned_cols=159 Identities=16% Similarity=0.101 Sum_probs=109.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--------------eeeeE-EEEECCEEEEEEEEeCCCcccccccCc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--------------DNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRP 74 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~ 74 (210)
+|+++|.+|+|||||++++..........++.. ..... ..........+.+||+||+.++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 589999999999999999998765543222110 01100 111122246788999999999888888
Q ss_pred ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc--
Q 028362 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-- 152 (210)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 152 (210)
.+++.+|++++|+|++++.+... ..++..+.. .+.|+++|+||+|+..... .........+..+..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~~i~iv~nK~D~~~~~~--------~~~~~~~~~~~~~~~~~ 148 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT--REHLRIARE--GGLPIIVAINKIDRVGEED--------LEEVLREIKELLGLIGF 148 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH--HHHHHHHHH--CCCCeEEEEECCCCcchhc--------HHHHHHHHHHHHccccc
Confidence 88999999999999987654433 233334333 5799999999999975321 001223333333332
Q ss_pred -----------CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 153 -----------GASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 153 -----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
...+++++||+++.|+++++.++.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 149 ISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2358899999999999999999998864
No 157
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.87 E-value=1.1e-21 Score=146.07 Aligned_cols=149 Identities=12% Similarity=0.067 Sum_probs=101.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCCC------------CCceeeeee-EEEEECCEEEEEEEEeCCCcccccccC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS--NKFPTDY------------IPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLR 73 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~ 73 (210)
-+|+++|.++||||||+++|.. +.+...+ .++.+.++. ....++...+.+.+||+||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 5554432 111222221 123344456788999999999999999
Q ss_pred cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc-
Q 028362 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI- 152 (210)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (210)
..+++++|++++|+|+++.. .... ..++..+.. .++|+++|+||+|+..... ....+++..+...+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~ 149 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDARP---------EEVVDEVFDLFIELG 149 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence 99999999999999998743 1221 233333332 4689999999999964321 01234444444222
Q ss_pred ------CCcEEEEeccCCCCCHHHH
Q 028362 153 ------GASYYIECSSKTQQNVKAV 171 (210)
Q Consensus 153 ------~~~~~~~~Sa~~~~~i~~~ 171 (210)
+. +++++||++|.|+.+.
T Consensus 150 ~~~~~~~~-~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 150 ATEEQLDF-PVLYASAKNGWASLNL 173 (194)
T ss_pred CccccCcc-CEEEeehhcccccccc
Confidence 33 7899999999887443
No 158
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=2e-21 Score=161.00 Aligned_cols=148 Identities=23% Similarity=0.264 Sum_probs=108.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccccc--------Cccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLS 76 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 76 (210)
..++|+++|.+|||||||+|+|.+... ......++.+.....+..++ ..+.+|||||.+++... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 458999999999999999999998653 33333344333344455555 45788999998765432 1235
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
+.++|++++|+|++++.++.+. ..|.. ..+.|+++|+||+|+..... .. ...+ .+
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~~--------~~~~-~~ 346 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------LE--------EENG-KP 346 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------hh--------hccC-Cc
Confidence 7889999999999998877654 34433 35789999999999965432 11 1222 47
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
++++||+++.|++++++++.+.+..
T Consensus 347 ~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 347 VIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 8899999999999999999998754
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=2.1e-21 Score=162.34 Aligned_cols=160 Identities=21% Similarity=0.178 Sum_probs=108.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc----------cccC-
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----------NRLR- 73 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~- 73 (210)
..++|+++|.+|||||||+++|.+... ......++.+.+...+..++.. +.+|||||..+. ..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998764 2233333333334445566654 468999996322 2211
Q ss_pred cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (210)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
..+++++|++++|+|++++.+..+. .++..+.. .++|+++|+||+|+..... ......+.........
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~--------~~~~~~~i~~~l~~~~ 355 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDR--------RYYLEREIDRELAQVP 355 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhH--------HHHHHHHHHHhcccCC
Confidence 2346899999999999998887765 34444433 4789999999999964321 0011112222112223
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
..+++++||++|.|++++|+.+.+.+.
T Consensus 356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 356 WAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 358899999999999999999988764
No 160
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.87 E-value=1.9e-21 Score=142.23 Aligned_cols=153 Identities=22% Similarity=0.245 Sum_probs=99.8
Q ss_pred EECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc----ccccC---cccccCccEEE
Q 028362 13 TVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLR---PLSYRGADVFV 84 (210)
Q Consensus 13 llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~---~~~~~~~~~~i 84 (210)
++|++|||||||++++.+.... ..+..++.........++ ....+.+||+||... .+.++ ...++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 5899999999999999987642 222222211111123333 145678899999743 22232 22467899999
Q ss_pred EEEECCCh------hHHHHHHHHHHHHHhccC--------CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362 85 LAFSLVSR------ASYENVLKKWIPELQHYS--------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (210)
Q Consensus 85 ~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
+|+|++++ .++.+. ..|...+.... .+.|+++|+||+|+..... ...........
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~~ 148 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELAL 148 (176)
T ss_pred EEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHhc
Confidence 99999988 466665 55555554332 3689999999999975432 11111122222
Q ss_pred HcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 151 QIGASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
. ...+++++||+++.|++++++++...
T Consensus 149 ~-~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 149 E-EGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred C-CCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 2 33478999999999999999998764
No 161
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.87 E-value=3.5e-21 Score=138.03 Aligned_cols=145 Identities=23% Similarity=0.277 Sum_probs=102.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccccc--------Cccccc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLSYR 78 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 78 (210)
++|+++|++|+|||||++++.+.... ....++...........++ ..+.+||+||..++... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987532 2222222222222333343 56788999998665422 123567
Q ss_pred CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
.+|++++|+|++++.+..+. ..+.. ..+.|+++|+||+|+..... . ..... ..+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~-~~~~~ 135 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLA-GKPII 135 (157)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccC-CCceE
Confidence 89999999999988777665 33322 35799999999999976542 1 22222 34889
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 028362 159 ECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
++||+++.|++++++++.+.+
T Consensus 136 ~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 136 AISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 999999999999999988754
No 162
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.87 E-value=1.7e-21 Score=140.40 Aligned_cols=142 Identities=17% Similarity=0.123 Sum_probs=99.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC----cccccCccEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----PLSYRGADVFVL 85 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~~~~~~~~~~i~ 85 (210)
+|+++|.+|||||||++++.+.. ... .++... .+... .+||+||+......+ ...++.+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-~~~~~v------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLA-RKTQAV------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccC-ccceEE------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999987543 111 122221 22222 269999973222111 123679999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-cEEEEeccCC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKT 164 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 164 (210)
|+|+++..++.. .|+..+ ..+.|+++++||+|+.. ...+.+.+++.+.+. .|++++||++
T Consensus 71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPD-------------ADVAATRKLLLETGFEEPIFELNSHD 131 (158)
T ss_pred EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCc-------------ccHHHHHHHHHHcCCCCCEEEEECCC
Confidence 999998876532 233222 24679999999999854 234556677777764 4899999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028362 165 QQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~~~ 182 (210)
++|++++|+++.+.+...
T Consensus 132 g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 132 PQSVQQLVDYLASLTKQE 149 (158)
T ss_pred ccCHHHHHHHHHHhchhh
Confidence 999999999998877554
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=1.7e-21 Score=162.93 Aligned_cols=154 Identities=19% Similarity=0.247 Sum_probs=107.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCce-eeeeeEEEEECCEEEEEEEEeCCCccc--------ccccCccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLS 76 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 76 (210)
...+|+|+|.+|||||||+|+|.+.... ....|.. .+.........+. .+.+|||||++. +...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4579999999999999999999987542 1223322 2223334445553 577899999763 23344557
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
++.+|++|+|+|++++.+... ..+...+.. .++|+++|+||+|+.... .+....+ ..+...
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~~~~-------------~~~~~~~--~~g~~~ 175 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDERGE-------------ADAAALW--SLGLGE 175 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCccc-------------hhhHHHH--hcCCCC
Confidence 889999999999998765543 345555543 479999999999986421 1111222 233334
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
.+++||++|.|++++|+++++.+..
T Consensus 176 ~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 176 PHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred eEEEEcCCCCCcHHHHHHHHhhccc
Confidence 4689999999999999999998865
No 164
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=4.2e-21 Score=163.51 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=115.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-------CCCCCCCce------eeeeeE---EEEE---CCEEEEEEEEeCCCccc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTV------FDNFSA---NVVA---EGTTVNLGLWDTAGQED 68 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~-------~~~~~~~~~------~~~~~~---~~~~---~~~~~~~~i~D~~G~~~ 68 (210)
.-+++++|+.++|||||+++|.... +...+..+. +.++.. .+.+ ++..+.+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998641 222222221 222221 1212 46679999999999999
Q ss_pred ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH
Q 028362 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 148 (210)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (210)
|...+..+++.+|++|+|+|+++..+.+.. ..|...+. .++|+++|+||+|+.... ......++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------~~~~~~el 146 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------PERVKKEI 146 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------HHHHHHHH
Confidence 999999999999999999999987666654 44544332 368999999999986431 12223444
Q ss_pred HHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 149 RKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 149 ~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
...++.. .++++||++|.|++++|+++.+.+..+.
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 4445542 4789999999999999999999886653
No 165
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=9.9e-21 Score=154.61 Aligned_cols=156 Identities=22% Similarity=0.251 Sum_probs=108.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeeeEEEEECCEEEEEEEEeCCCcccc----cccCccc---ccCc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRPLS---YRGA 80 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~ 80 (210)
.|+|+|.||||||||++++++.+..-...| |....+. .+.++ ....|++||+||.... ..+...+ +..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG-~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG-VVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE-EEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 789999999999999999998653211112 2222221 12222 1356889999997432 2233333 4458
Q ss_pred cEEEEEEECCCh---hHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362 81 DVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (210)
Q Consensus 81 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (210)
+++++|+|+++. ..++.. ..|...+..+. .++|++||+||+|+.. ..+.+..+.+.++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~--------------~~e~l~~l~~~l~- 301 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPE--------------AEENLEEFKEKLG- 301 (424)
T ss_pred CEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcC--------------CHHHHHHHHHHhC-
Confidence 999999999864 455554 67777777654 3789999999999842 2234556666666
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 155 SYYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
.+++++||++++|++++++++.+.+...+
T Consensus 302 ~~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 302 PKVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 47899999999999999999998876543
No 166
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=6.7e-21 Score=142.67 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=89.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCc-cEEEEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFVLAFS 88 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-~~~i~v~d 88 (210)
+|+++|++|||||+|+++|..+.+...+.++............+....+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988766654443221111111124457789999999999998888889998 99999999
Q ss_pred CCCh-hHHHHHHHHHHHHHhc---cCCCCcEEEEeeCcccccc
Q 028362 89 LVSR-ASYENVLKKWIPELQH---YSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 89 ~~~~-~s~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~ 127 (210)
.++. +++..+...+...+.. ..+.+|+++++||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9998 6777764444454432 2268999999999998754
No 167
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.86 E-value=3e-21 Score=130.90 Aligned_cols=158 Identities=22% Similarity=0.259 Sum_probs=123.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
...+++|+.++|..++|||||++.|...... ...||.+.... . .-...++.+++||++||...+..|..|+.+.|++
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn~k-~-v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFNTK-K-VEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcceE-E-EeecCcEEEEEEecCCccccchhhhhhhhccceE
Confidence 3468999999999999999999999976543 33555544322 2 2234568999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-------Cc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-------AS 155 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 155 (210)
|||+|.+|+..|+++.+.+.+.++... ..+|++|..||.|+.-.. ..+..+.+.+ .+
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa---------------~~eeia~klnl~~lrdRsw 154 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA---------------KVEEIALKLNLAGLRDRSW 154 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc---------------chHHHHHhcchhhhhhceE
Confidence 999999999999998778888887766 789999999999995442 2233333322 34
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHH
Q 028362 156 YYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
.+-++||.+++|+.+-.+|+....
T Consensus 155 hIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 155 HIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred EeeeCccccccCccCcchhhhcCC
Confidence 556799999999999888887543
No 168
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.7e-20 Score=155.61 Aligned_cols=159 Identities=23% Similarity=0.249 Sum_probs=109.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC----------
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR---------- 73 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------- 73 (210)
...++|+++|.+|+|||||+++|.+... ......++.+.+...+..++. .+.+|||||..++....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 3568999999999999999999997652 233333444433444445554 57789999987665432
Q ss_pred -cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH-HHHH-
Q 028362 74 -PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRK- 150 (210)
Q Consensus 74 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 150 (210)
..+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ...++.. .+..
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~-----------~~~~~~~~~~~~~ 312 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDL--RIAGLILE--AGKALVIVVNKWDLVKDE-----------KTREEFKKELRRK 312 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEECcccCCCH-----------HHHHHHHHHHHHh
Confidence 1357889999999999988776653 34444333 368999999999997221 1111221 2212
Q ss_pred --HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 151 --QIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 151 --~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
..+..+++++||++|.|++++|+++.+.+..
T Consensus 313 ~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 313 LPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred cccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2234589999999999999999999886653
No 169
>PRK11058 GTPase HflX; Provisional
Probab=99.86 E-value=5.9e-21 Score=156.69 Aligned_cols=156 Identities=17% Similarity=0.131 Sum_probs=104.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEeCCCcccc--cccCc------ccccC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDY--NRLRP------LSYRG 79 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~~~~ 79 (210)
.+|+|+|.+|||||||+|+|.+........+ ++.+.....+...+. ..+.+|||+|..+. ...+. ..+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 6899999999999999999998654322222 222222223444432 25678999998432 12222 23678
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
+|++++|+|++++.+.... ..|...+.... .++|+++|+||+|+..... .. .. . ...+...++
T Consensus 277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----------~~--~~-~-~~~~~~~~v 340 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----------PR--ID-R-DEENKPIRV 340 (426)
T ss_pred CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-----------HH--HH-H-HhcCCCceE
Confidence 9999999999998877765 44544444433 4799999999999964311 00 11 1 123332357
Q ss_pred EeccCCCCCHHHHHHHHHHHHhC
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
.+||++|.|++++++++.+.+..
T Consensus 341 ~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 341 WLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred EEeCCCCCCHHHHHHHHHHHhhh
Confidence 89999999999999999998854
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.86 E-value=1.1e-20 Score=160.26 Aligned_cols=154 Identities=17% Similarity=0.246 Sum_probs=108.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
.+..+|+++|++++|||||+++|....+.....+.....+. ..+..++. ..+++|||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 36689999999999999999999988776554443333322 22333322 26788999999999999988899999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC--------CcE
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--------ASY 156 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 156 (210)
+|+|+++...-+.. +.+ ..... .++|+++++||+|+.... .+........++ ..+
T Consensus 164 LVVda~dgv~~qT~-e~i-~~~~~--~~vPiIVviNKiDl~~~~-------------~e~v~~~L~~~g~~~~~~~~~~~ 226 (587)
T TIGR00487 164 LVVAADDGVMPQTI-EAI-SHAKA--ANVPIIVAINKIDKPEAN-------------PDRVKQELSEYGLVPEDWGGDTI 226 (587)
T ss_pred EEEECCCCCCHhHH-HHH-HHHHH--cCCCEEEEEECcccccCC-------------HHHHHHHHHHhhhhHHhcCCCce
Confidence 99999874322221 121 22221 478999999999996431 222222222222 247
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q 028362 157 YIECSSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~ 177 (210)
++++||++|.|++++++++..
T Consensus 227 ~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 227 FVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEEEECCCCCChHHHHHhhhh
Confidence 899999999999999999875
No 171
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.86 E-value=5e-21 Score=135.87 Aligned_cols=147 Identities=21% Similarity=0.233 Sum_probs=98.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccccc------Ccccc--cC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSY--RG 79 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~ 79 (210)
++|+++|.||||||||+|+|.+.+..-...|...... ...+...+ ..+.++|+||....... ...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999998875433334332222 33455566 55677999996444322 12222 57
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
.|+++.|+|+++.+.-.. +...+.. -++|+++++||+|+..... ...+...+.+.++. |.++
T Consensus 79 ~D~ii~VvDa~~l~r~l~----l~~ql~e--~g~P~vvvlN~~D~a~~~g-----------~~id~~~Ls~~Lg~-pvi~ 140 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY----LTLQLLE--LGIPVVVVLNKMDEAERKG-----------IEIDAEKLSERLGV-PVIP 140 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH----HHHHHHH--TTSSEEEEEETHHHHHHTT-----------EEE-HHHHHHHHTS--EEE
T ss_pred CCEEEEECCCCCHHHHHH----HHHHHHH--cCCCEEEEEeCHHHHHHcC-----------CEECHHHHHHHhCC-CEEE
Confidence 999999999987543322 2222222 3699999999999987653 22246777788886 8999
Q ss_pred eccCCCCCHHHHHHHH
Q 028362 160 CSSKTQQNVKAVFDAA 175 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i 175 (210)
+||+++.|++++++.+
T Consensus 141 ~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 141 VSARTGEGIDELKDAI 156 (156)
T ss_dssp EBTTTTBTHHHHHHHH
T ss_pred EEeCCCcCHHHHHhhC
Confidence 9999999999998765
No 172
>PRK00089 era GTPase Era; Reviewed
Probab=99.86 E-value=1.1e-20 Score=149.24 Aligned_cols=159 Identities=21% Similarity=0.222 Sum_probs=108.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCC-CCC-ceeeeeeEEEEECCEEEEEEEEeCCCccccc--------ccCccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDYN--------RLRPLS 76 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~ 76 (210)
+.-.|+|+|.+|||||||+|+|.+...... ..| |+..... .+... ....+.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~-~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIR-GIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEE-EEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 556799999999999999999998765321 112 2222111 12222 23788999999975432 122235
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
+.++|++++|+|++++.+ .....++..+.. .+.|+++|+||+|+..... ........+....+..+
T Consensus 82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~----------~l~~~~~~l~~~~~~~~ 147 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG--PGDEFILEKLKK--VKTPVILVLNKIDLVKDKE----------ELLPLLEELSELMDFAE 147 (292)
T ss_pred HhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh--cCCCEEEEEECCcCCCCHH----------HHHHHHHHHHhhCCCCe
Confidence 678999999999988322 111333444432 3689999999999974322 23445556666566668
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
++++||+++.|++++++++.+.+..
T Consensus 148 i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 148 IVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCC
Confidence 8999999999999999999998754
No 173
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.86 E-value=8.8e-21 Score=141.01 Aligned_cols=161 Identities=15% Similarity=0.104 Sum_probs=100.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC----CCCCCC-----CCceeeeeeEEEEE------------CCEEEEEEEEeCCCcc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN----KFPTDY-----IPTVFDNFSANVVA------------EGTTVNLGLWDTAGQE 67 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~----~~~~~~-----~~~~~~~~~~~~~~------------~~~~~~~~i~D~~G~~ 67 (210)
++|+++|++++|||||+++|... .+.... ..|....+. ...+ .+..+.+.+||+||+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFS-SFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecce-EEEecccccccccccccccCceEEEEECCCcH
Confidence 58999999999999999999962 221111 122222211 1112 2346789999999997
Q ss_pred cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (210)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (210)
.+..........+|++++|+|+++....... ..+. .... .+.|+++|+||+|+..... .....++..+
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~~~~~--------~~~~~~~~~~ 147 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLIPEEE--------RERKIEKMKK 147 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccCCHHH--------HHHHHHHHHH
Confidence 6533322345668999999999875443332 2221 1111 2579999999999864321 0011222222
Q ss_pred HH-HH-----cCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 148 LR-KQ-----IGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 148 ~~-~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.. .. ....+++++||+++.|++++++++.+++.-+
T Consensus 148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 11 11 1224789999999999999999999887654
No 174
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4e-21 Score=136.48 Aligned_cols=169 Identities=28% Similarity=0.449 Sum_probs=139.8
Q ss_pred CCCCCCc--eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCE-EEEEEEEeCCCcccccccCcccc
Q 028362 1 MASSASR--FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQEDYNRLRPLSY 77 (210)
Q Consensus 1 m~~~~~~--~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~ 77 (210)
|.+.... .++++++|+.|.||||++++...+.|...+.+|.+.......-..+. .+.|..||+.|++.+-.+...++
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy 80 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY 80 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence 5554444 79999999999999999999999999999999998776554443333 49999999999999999999999
Q ss_pred cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (210)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
-.+...|++||++.+-.+.+. ..|..-+.+.+.++|+++.|||.|..... .......+-+..+ ..+
T Consensus 81 I~~qcAiimFdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkkn-l~y 146 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKN-LQY 146 (216)
T ss_pred EecceeEEEeeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------cccccceeeeccc-cee
Confidence 999999999999999999998 78988888888889999999999997653 1122223333444 378
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 158 IECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
+++||+++.|.+.-|-|+.+++...+
T Consensus 147 ~~iSaksn~NfekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 147 YEISAKSNYNFERPFLWLARKLTGDP 172 (216)
T ss_pred EEeecccccccccchHHHhhhhcCCC
Confidence 89999999999999999999887554
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=3.4e-20 Score=134.94 Aligned_cols=156 Identities=23% Similarity=0.281 Sum_probs=101.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccccc-----------C
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-----------R 73 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 73 (210)
+.++|+++|.+|+|||||++++.+.... .....+...........++. .+.+||+||..+.... .
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHH
Confidence 3689999999999999999999976532 12222222222233444554 4678999997543211 1
Q ss_pred cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHH-HHHHHHHc
Q 028362 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRKQI 152 (210)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 152 (210)
...+..+|++++|+|++++.+.... .+...+.. .+.|+++++||+|+..... ...+. ...+.+..
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~ 144 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKL 144 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCccH----------HHHHHHHHHHHhhc
Confidence 1235689999999999988765543 33333332 3689999999999976521 11222 12222222
Q ss_pred C---CcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 153 G---ASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 153 ~---~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
+ ..+++++||+++.|++++++++.+.
T Consensus 145 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 145 PFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 2 3578999999999999999988763
No 176
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.9e-21 Score=132.17 Aligned_cols=161 Identities=15% Similarity=0.162 Sum_probs=124.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.+..+++++|..|+||||+..++.-++.... .|+++.... .+..++..+++||++|+...+..|..|+.+.+++|+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 4789999999999999999999987765333 566644422 233477999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH----HHHcCCcEEEEe
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL----RKQIGASYYIEC 160 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 160 (210)
|+|.+|+...--....+...+.... .+..+++++||.|..... ...++... ..+.....++.+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~------------t~~E~~~~L~l~~Lk~r~~~Iv~t 159 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL------------TRSEVLKMLGLQKLKDRIWQIVKT 159 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh------------hHHHHHHHhChHHHhhheeEEEee
Confidence 9999999877666566777777655 567888999999997663 22222111 111233578999
Q ss_pred ccCCCCCHHHHHHHHHHHHhCC
Q 028362 161 SSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
||.+|+|++++++|+.+.+..+
T Consensus 160 SA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 160 SAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ccccccCCcHHHHHHHHHHhcc
Confidence 9999999999999999987653
No 177
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=2.8e-20 Score=154.57 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=103.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc--------ccccCccccc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLSYR 78 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 78 (210)
++|+|+|.+|||||||+|+|.+... .....+++.+........++ ..+.+|||||++. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999997763 23333333333333455555 6788999999976 2223445678
Q ss_pred CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
.+|++++|+|+.++.+..+. .+...+.. .+.|+++|+||+|+.... ....++ ..++...++
T Consensus 80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~--~~~piilv~NK~D~~~~~--------------~~~~~~-~~lg~~~~~ 140 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE--EIAKILRK--SNKPVILVVNKVDGPDEE--------------ADAYEF-YSLGLGEPY 140 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCcEEEEEECccCccch--------------hhHHHH-HhcCCCCCE
Confidence 99999999999875433321 22223332 268999999999974321 122222 244554578
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 028362 159 ECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
++||+++.|++++++++....
T Consensus 141 ~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 141 PISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred EEEeeCCCCHHHHHHHHHhhC
Confidence 999999999999999998843
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=3.3e-20 Score=159.79 Aligned_cols=161 Identities=14% Similarity=0.211 Sum_probs=110.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee---eeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD---NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
.+...|+|+|..++|||||+++|....+.....+.... .+......++....+++|||||++.|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 46689999999999999999999977665433322211 122223334456889999999999999999989999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH---HHHHcC-CcEEE
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE---LRKQIG-ASYYI 158 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~ 158 (210)
+|+|+|+++....+.. +.| ..+.. .++|+++++||+|+..... ....+.+.. +....+ ..+++
T Consensus 322 aILVVDA~dGv~~QT~-E~I-~~~k~--~~iPiIVViNKiDl~~~~~---------e~v~~eL~~~~ll~e~~g~~vpvv 388 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAI-NYIQA--ANVPIIVAINKIDKANANT---------ERIKQQLAKYNLIPEKWGGDTPMI 388 (742)
T ss_pred EEEEEECcCCCChhhH-HHH-HHHHh--cCceEEEEEECCCccccCH---------HHHHHHHHHhccchHhhCCCceEE
Confidence 9999999875332221 222 22222 4789999999999965320 001111111 112222 35899
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 028362 159 ECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
++||++|.|++++++++....
T Consensus 389 ~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 389 PISASQGTNIDKLLETILLLA 409 (742)
T ss_pred EEECCCCCCHHHHHHhhhhhh
Confidence 999999999999999987754
No 179
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.84 E-value=5.2e-20 Score=137.10 Aligned_cols=161 Identities=20% Similarity=0.104 Sum_probs=103.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc----------cccccCc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----------DYNRLRP 74 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~ 74 (210)
....++|+++|.+|||||||++++.+..+.....++.+.+....... .+..+.+||+||.. .+..+..
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 34568999999999999999999998765444444443333222211 13678999999953 2223333
Q ss_pred ccccC---ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362 75 LSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (210)
Q Consensus 75 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (210)
.++.. .+++++|+|.+++.+.... .+...+.. .++|+++++||+|+..... .....+.+......
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~~ 166 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKKGE--------RKKQLKKVRKALKF 166 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCHHH--------HHHHHHHHHHHHHh
Confidence 34443 4678888998775443321 22233322 3689999999999965421 00112233344333
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 152 IGASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 152 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
.. .+++++||+++.|++++++.+.+.+.
T Consensus 167 ~~-~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 167 GD-DEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cC-CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33 47889999999999999999987654
No 180
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=6e-20 Score=149.19 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=107.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEeCCCcccccc----cC---cccccCcc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR----LR---PLSYRGAD 81 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~---~~~~~~~~ 81 (210)
.|+|+|.||||||||+|+|++.+..-...| |+.......+... ....+.++|+||..+-.. +. ...+..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 689999999999999999997654222222 2211111122222 224578899999743211 11 12467899
Q ss_pred EEEEEEECC---ChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-
Q 028362 82 VFVLAFSLV---SRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA- 154 (210)
Q Consensus 82 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (210)
++++|+|++ +...+... ..|+..+..+. .+.|+++|+||+|+..... ..+....+....+.
T Consensus 240 vlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-----------l~~~l~~l~~~~~~~ 307 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-----------AEERAKAIVEALGWE 307 (390)
T ss_pred EEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-----------HHHHHHHHHHHhCCC
Confidence 999999998 44455554 67777776654 3689999999999965431 23344455554442
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 155 SYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.+++++||+++.|++++++++.+.+...
T Consensus 308 ~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 308 GPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 2678999999999999999999988653
No 181
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.84 E-value=5.3e-20 Score=137.93 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=101.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC---CC--CCceeeeeeE-EE-----------------------EEC--C----
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPT---DY--IPTVFDNFSA-NV-----------------------VAE--G---- 53 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~---~~--~~~~~~~~~~-~~-----------------------~~~--~---- 53 (210)
++|+++|+.|+|||||+..+.....+. .. ..+....+.. .. ... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 478999999999999999997432111 00 0000000000 00 000 1
Q ss_pred EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC
Q 028362 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 133 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~ 133 (210)
....+.+||+||++.|...+...+.++|++++|+|++++...... ...+..+... ...|+++|+||+|+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t-~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~---- 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQT-SEHLAALEIM-GLKHIIIVQNKIDLVKEEQ---- 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcch-HHHHHHHHHc-CCCcEEEEEEchhccCHHH----
Confidence 126789999999999887777778889999999999874111111 1122222221 2347999999999965321
Q ss_pred CCCCCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 134 HPGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.....+.+.++...+ ...+++++||+++.|++++++++.+.+..+
T Consensus 155 ----~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 155 ----ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred ----HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 001123344444432 124789999999999999999999877654
No 182
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.83 E-value=1.9e-19 Score=156.31 Aligned_cols=158 Identities=16% Similarity=0.248 Sum_probs=108.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
.+...|+++|..++|||||+++|....+.....+....... ..+..++ ..+++|||||++.|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 47789999999999999999999877665443333322221 2233444 56888999999999999988899999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH---HHHHHcC-CcEEEEe
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE---ELRKQIG-ASYYIEC 160 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~ 160 (210)
+|+|+++...-+.. ..| ..... .++|+++++||+|+..... . ....++. .++..++ ..+++++
T Consensus 366 LVVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~a~~--------e-~V~~eL~~~~~~~e~~g~~vp~vpv 432 (787)
T PRK05306 366 LVVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPGANP--------D-RVKQELSEYGLVPEEWGGDTIFVPV 432 (787)
T ss_pred EEEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccccCH--------H-HHHHHHHHhcccHHHhCCCceEEEE
Confidence 99999874322221 222 12222 4689999999999965320 0 0111111 1122222 2489999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 028362 161 SSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~~ 178 (210)
||++|.|++++|+++...
T Consensus 433 SAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 433 SAKTGEGIDELLEAILLQ 450 (787)
T ss_pred eCCCCCCchHHHHhhhhh
Confidence 999999999999998754
No 183
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.6e-19 Score=149.40 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=101.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEeCCCcccc----cccC---cccccCc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLR---PLSYRGA 80 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~ 80 (210)
..|+|+|.||||||||+++|++.+..-...| |+.......+...+ ..|++||+||.... ..+. -..+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 4789999999999999999997653322122 22111111223333 57899999996421 1111 1235679
Q ss_pred cEEEEEEECCCh----hHHHHHHHHHHHHHhccC------------CCCcEEEEeeCcccccccccccCCCCCCccCHHH
Q 028362 81 DVFVLAFSLVSR----ASYENVLKKWIPELQHYS------------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 144 (210)
Q Consensus 81 ~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 144 (210)
+++|+|+|+++. ..+... ..|...+..+. .+.|++||+||+|+..... ..+.
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-----------l~e~ 305 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-----------LAEF 305 (500)
T ss_pred CEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-----------HHHH
Confidence 999999999753 233332 33333333221 3689999999999965432 1222
Q ss_pred HHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 145 GEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 145 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
........+. +++++||+++.|+++++.++.+.+...
T Consensus 306 l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 306 VRPELEARGW-PVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred HHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 2323334454 889999999999999999999887654
No 184
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.83 E-value=1.3e-19 Score=154.28 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=112.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC---CCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
+.|+++|.+++|||||+++|.+. .+.+++.+....++.. .+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999963 3333334444333322 233444 78899999999999887777889999999
Q ss_pred EEEECCC---hhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC---CcEE
Q 028362 85 LAFSLVS---RASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG---ASYY 157 (210)
Q Consensus 85 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 157 (210)
+|+|+++ +++.+.+ ..+.. .++| +++|+||+|+.+... .....+++..+....+ ..++
T Consensus 79 LVVDa~~G~~~qT~ehl-----~il~~--lgi~~iIVVlNK~Dlv~~~~--------~~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL-----AVLDL--LGIPHTIVVITKADRVNEEE--------IKRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred EEEECCCCCcHHHHHHH-----HHHHH--cCCCeEEEEEECCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCcE
Confidence 9999987 4444333 23322 2577 999999999965431 0012345555555543 3589
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 158 IECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
+++||++|.|+++++.++...+....
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 99999999999999999887765543
No 185
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=1e-19 Score=150.96 Aligned_cols=152 Identities=21% Similarity=0.252 Sum_probs=106.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc--------cccccCcccccC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE--------DYNRLRPLSYRG 79 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 79 (210)
+|+++|.+|||||||+|+|.+... ......++.+........++ ..+.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998653 22323333333333444555 458889999963 233445567889
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
+|++++|+|..++.+... ..+...+.. .++|+++|+||+|+..... .. .+ ...++..++++
T Consensus 79 ad~vl~vvD~~~~~~~~d--~~i~~~l~~--~~~piilVvNK~D~~~~~~-----------~~---~~-~~~lg~~~~~~ 139 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED--EEIAKWLRK--SGKPVILVANKIDGKKEDA-----------VA---AE-FYSLGFGEPIP 139 (429)
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH--hCCCEEEEEECccCCcccc-----------cH---HH-HHhcCCCCeEE
Confidence 999999999987544332 233344433 3689999999999865431 11 12 23556667899
Q ss_pred eccCCCCCHHHHHHHHHHHHhCC
Q 028362 160 CSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
+||+++.|++++++++.+.+...
T Consensus 140 vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 140 ISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred EeCCcCCChHHHHHHHHHhcCcc
Confidence 99999999999999999887553
No 186
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.83 E-value=6.4e-20 Score=134.88 Aligned_cols=150 Identities=17% Similarity=0.111 Sum_probs=95.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEECCEEEEEEEEeCCCccc----------ccccC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQED----------YNRLR 73 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~----------~~~~~ 73 (210)
..+.++|+++|.+|+|||||++++.+..+.....++.+.+.... ...++ .+.+||+||... +..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 45678999999999999999999998764333333433332222 12222 588999999532 22222
Q ss_pred ccccc---CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362 74 PLSYR---GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (210)
Q Consensus 74 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
..+++ .++++++|+|.+++-+..+. .+...+.. .+.|+++++||+|+..... .....+++++...
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~--~~~pviiv~nK~D~~~~~~--------~~~~~~~i~~~l~ 159 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE--RGIPVLIVLTKADKLKKSE--------LNKQLKKIKKALK 159 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCHHH--------HHHHHHHHHHHHh
Confidence 33444 35799999999876544432 33344433 3689999999999964321 0023344444544
Q ss_pred HcC-CcEEEEeccCCCCCHH
Q 028362 151 QIG-ASYYIECSSKTQQNVK 169 (210)
Q Consensus 151 ~~~-~~~~~~~Sa~~~~~i~ 169 (210)
..+ ..+++++||++++|++
T Consensus 160 ~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 160 KDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred hccCCCceEEEECCCCCCCC
Confidence 443 2378999999999974
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=8.3e-20 Score=155.78 Aligned_cols=162 Identities=17% Similarity=0.186 Sum_probs=113.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC--CCCC-----CCCC------ceeeeeeE---EEE---ECCEEEEEEEEeCCCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----DYIP------TVFDNFSA---NVV---AEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~~-----~~~~------~~~~~~~~---~~~---~~~~~~~~~i~D~~G~ 66 (210)
++.-+++++|+.++|||||+.+|... .+.. .... +.+.++.. .+. .++..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 45568999999999999999999852 2211 1100 11111111 111 1566799999999999
Q ss_pred ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH
Q 028362 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 146 (210)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 146 (210)
.+|...+..+++.+|++|+|+|+++....+.. ..|..... .++|+++|+||+|+.... ......
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~------------~~~v~~ 148 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAAD------------PERVKQ 148 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCccc------------HHHHHH
Confidence 99999899999999999999999987655543 34443322 368999999999986432 112223
Q ss_pred HHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 147 ELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 147 ~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
++...++. ..++++||+++.|++++++++.+.+..+.
T Consensus 149 ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 149 EIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 34444443 24789999999999999999999886553
No 188
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.82 E-value=8.3e-19 Score=133.88 Aligned_cols=149 Identities=19% Similarity=0.189 Sum_probs=98.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc----c---cCcccccCcc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN----R---LRPLSYRGAD 81 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~---~~~~~~~~~~ 81 (210)
+|+++|.+|+|||||+++|.+..... .+..++.......+.+++ ..+++||+||+.+.. . .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 78999999999999999999765322 222222111122333444 577889999985432 1 2234688999
Q ss_pred EEEEEEECCChhH-HHHHHHHHHH-----------------------------------------HH-------------
Q 028362 82 VFVLAFSLVSRAS-YENVLKKWIP-----------------------------------------EL------------- 106 (210)
Q Consensus 82 ~~i~v~d~~~~~s-~~~~~~~~~~-----------------------------------------~~------------- 106 (210)
++++|+|++++.. ...+ ...++ .+
T Consensus 80 ~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 80 LILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred EEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999987653 2222 11111 11
Q ss_pred ------------hccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHH
Q 028362 107 ------------QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174 (210)
Q Consensus 107 ------------~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 174 (210)
......+|+++|+||+|+.. .+++..++.. .+++++||+++.|++++|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~ 220 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS---------------IEELDLLARQ---PNSVVISAEKGLNLDELKER 220 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC---------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHH
Confidence 11112369999999999943 3344455443 35788999999999999999
Q ss_pred HHHHH
Q 028362 175 AIKVV 179 (210)
Q Consensus 175 i~~~~ 179 (210)
+.+.+
T Consensus 221 i~~~L 225 (233)
T cd01896 221 IWDKL 225 (233)
T ss_pred HHHHh
Confidence 98865
No 189
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=2.8e-19 Score=151.58 Aligned_cols=166 Identities=18% Similarity=0.111 Sum_probs=104.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----ceeeeeeEEEEEC-------------CEEEEEEEEeCCCcccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP----TVFDNFSANVVAE-------------GTTVNLGLWDTAGQEDY 69 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~ 69 (210)
+..-|+++|.+++|||||+++|.+..+...... +.+..+....... .....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 456799999999999999999998776443222 1122211100000 01123889999999999
Q ss_pred cccCcccccCccEEEEEEECCC---hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCC-------CCCc
Q 028362 70 NRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP-------GLVP 139 (210)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~-------~~~~ 139 (210)
..++..+++.+|++++|+|+++ +.+++.+ ..+.. .++|+++++||+|+..........+ ....
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-----~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-----HHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 9999989999999999999987 4444433 22222 3689999999999964321000000 0000
Q ss_pred c-------CHHHHHHHH-------------HHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 140 V-------TTAQGEELR-------------KQIGASYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 140 ~-------~~~~~~~~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
+ ......++. ...+..+++++||++|+|+++++.++....
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0 000001111 112335899999999999999999886543
No 190
>COG1159 Era GTPase [General function prediction only]
Probab=99.82 E-value=5e-19 Score=135.24 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=112.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc--------ccCc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN--------RLRP 74 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~ 74 (210)
..+.--|+++|.||||||||+|++.+.+.. .....|+........+ ..+.++.++||||.-.-+ ....
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t--~~~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVT--TDNAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEE--cCCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 346678999999999999999999998753 2212222222222222 236788899999953222 1222
Q ss_pred ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (210)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (210)
..+.++|+++||+|++.+..-.+ +..++.+.. .+.|+++++||+|...... ........+......
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~----------~l~~~~~~~~~~~~f 146 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKT----------VLLKLIAFLKKLLPF 146 (298)
T ss_pred HHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHH----------HHHHHHHHHHhhCCc
Confidence 34778999999999987544332 344455544 4689999999999877642 223444444455566
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 155 SYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
...+++||++|.|++.+.+.+...+.+.
T Consensus 147 ~~ivpiSA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 147 KEIVPISALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred ceEEEeeccccCCHHHHHHHHHHhCCCC
Confidence 7889999999999999999999888654
No 191
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.81 E-value=6.2e-19 Score=150.35 Aligned_cols=145 Identities=18% Similarity=0.224 Sum_probs=103.7
Q ss_pred CCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccccc------Ccccc--cCccEEEE
Q 028362 15 GDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFVL 85 (210)
Q Consensus 15 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~~i~ 85 (210)
|.+|||||||+|++.+......+.|....+. ......++ ..+++||+||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998776444455443333 23344555 45788999999887654 22222 36899999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|+|.++.+... .+...+.+ .++|+++|+||+|+.+... + ..+.+.+++..+. +++++||+++
T Consensus 79 VvDat~ler~l----~l~~ql~~--~~~PiIIVlNK~Dl~~~~~----------i-~~d~~~L~~~lg~-pvv~tSA~tg 140 (591)
T TIGR00437 79 VVDASNLERNL----YLTLQLLE--LGIPMILALNLVDEAEKKG----------I-RIDEEKLEERLGV-PVVPTSATEG 140 (591)
T ss_pred EecCCcchhhH----HHHHHHHh--cCCCEEEEEehhHHHHhCC----------C-hhhHHHHHHHcCC-CEEEEECCCC
Confidence 99998754322 22222222 4789999999999975542 2 3346777888886 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028362 166 QNVKAVFDAAIKVV 179 (210)
Q Consensus 166 ~~i~~~~~~i~~~~ 179 (210)
+|++++++++.+..
T Consensus 141 ~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 141 RGIERLKDAIRKAI 154 (591)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 192
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.81 E-value=4.4e-22 Score=140.94 Aligned_cols=168 Identities=27% Similarity=0.442 Sum_probs=141.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEE--EECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV--VAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
.+.+++.|+|.-|+|||+++.+++...|+..+..+++.++...+ ..+...+.+++||+.||++|..+..-+++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 35689999999999999999999999998888888887774432 2344557889999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
++|||+++..+|+.. ..|.+.+.... ..+|+|+..||||...... ........+++++.+...++
T Consensus 103 ~iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gwt 172 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGWT 172 (229)
T ss_pred EEEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCcccee
Confidence 999999999999987 78988776543 2578899999999976642 01235678888899998999
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
++|++.+.||+|+-..+++++.-+.
T Consensus 173 ets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 173 ETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred eeccccccChhHHHHHHHHHHHhhc
Confidence 9999999999999999999887654
No 193
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.81 E-value=6.7e-20 Score=135.82 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=107.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC--CCCC------------------CCCceeeeeeEEEEECCEEEEEEEEeCCC
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNK--FPTD------------------YIPTVFDNFSANVVAEGTTVNLGLWDTAG 65 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 65 (210)
++.++|+++|+.++|||||+++|.... .... ..-+.... ............++++|+||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~-~~~~~~~~~~~~i~~iDtPG 79 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLS-FISFEKNENNRKITLIDTPG 79 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSE-EEEEEBTESSEEEEEEEESS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccc-cccccccccccceeeccccc
Confidence 467899999999999999999999432 1110 00011111 11111124557888999999
Q ss_pred cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHH
Q 028362 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 145 (210)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (210)
+.+|.......+..+|++|+|+|+.+.-.... ...+..+.. .++|+++++||+|+...+. ....++.
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~--~~~p~ivvlNK~D~~~~~~---------~~~~~~~ 146 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILRE--LGIPIIVVLNKMDLIEKEL---------EEIIEEI 146 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHH--TT-SEEEEEETCTSSHHHH---------HHHHHHH
T ss_pred ccceeecccceecccccceeeeeccccccccc--ccccccccc--cccceEEeeeeccchhhhH---------HHHHHHH
Confidence 99998777778899999999999987644332 344444443 3688999999999974321 0111222
Q ss_pred H-HHHHHcC-----CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 146 E-ELRKQIG-----ASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 146 ~-~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
. .+.+.++ ..|++++||.+|.|++++++.+.+.+.
T Consensus 147 ~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 147 KEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 2 3434442 358999999999999999999988653
No 194
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.81 E-value=6e-19 Score=126.18 Aligned_cols=149 Identities=21% Similarity=0.180 Sum_probs=101.0
Q ss_pred EECCCCCCHHHHHHHHHcCCCC-CC-CCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc-------ccccCccEE
Q 028362 13 TVGDGAVGKTCMLICYTSNKFP-TD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF 83 (210)
Q Consensus 13 llG~~~~GKStli~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~~~~~~~~ 83 (210)
++|++|+|||||++++.+.... .. ..++............ ....+.+||+||...+..... .++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999976543 22 1222222222222222 146788999999877654443 367889999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHH----HHHHHHcCCcEEEE
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG----EELRKQIGASYYIE 159 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 159 (210)
++|+|.++..+.... . +...... .+.|+++|+||.|+..... .... ..........++++
T Consensus 80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 143 (163)
T cd00880 80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEE------------EEELLELRLLILLLLLGLPVIA 143 (163)
T ss_pred EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhh------------HHHHHHHHHhhcccccCCceEE
Confidence 999999988777665 2 3333322 5799999999999976532 1111 11222233458899
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 028362 160 CSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~ 178 (210)
+||+++.|++++++++.+.
T Consensus 144 ~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 144 VSALTGEGIDELREALIEA 162 (163)
T ss_pred EeeeccCCHHHHHHHHHhh
Confidence 9999999999999998764
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=8.8e-19 Score=152.94 Aligned_cols=157 Identities=20% Similarity=0.212 Sum_probs=108.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc-cccC----------
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-NRLR---------- 73 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~---------- 73 (210)
..++|+++|.+|||||||+|+|.+... ...+.+|+.+.+.....+++.. +.+|||||..+- +..+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999998763 3344445544444445566654 557999996421 1111
Q ss_pred cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH-HHHH-
Q 028362 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-LRKQ- 151 (210)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 151 (210)
...++.+|++++|+|++++.+..+. . +...+.. .++|+++|+||+|+.+.. ..+.... +...
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~-~-i~~~~~~--~~~piIiV~NK~DL~~~~------------~~~~~~~~~~~~l 590 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDL-K-VMSMAVD--AGRALVLVFNKWDLMDEF------------RRQRLERLWKTEF 590 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHH-H-HHHHHHH--cCCCEEEEEEchhcCChh------------HHHHHHHHHHHhc
Confidence 1236789999999999998777764 2 3333332 468999999999996432 1111221 1111
Q ss_pred --cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 152 --IGASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 152 --~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
....+.+.+||++|.|++++++.+.+.+..
T Consensus 591 ~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 591 DRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 223467889999999999999999887764
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=1.1e-18 Score=152.34 Aligned_cols=154 Identities=21% Similarity=0.222 Sum_probs=103.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcee-eeeeEEEEECCEEEEEEEEeCCCccc--------ccccCccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLS 76 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 76 (210)
...+|+|+|.+|||||||+|+|.+.... ....|... .........++ ..+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 4478999999999999999999976531 11123222 22222233344 4678899999763 22333446
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
++.+|++|+|+|.++.-... ...|...+.. .++|+++|+||+|+.... .....+. .++...
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~--d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~--------------~~~~~~~-~lg~~~ 412 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTST--DERIVRMLRR--AGKPVVLAVNKIDDQASE--------------YDAAEFW-KLGLGE 412 (712)
T ss_pred HHhCCEEEEEEECCCCCCHH--HHHHHHHHHh--cCCCEEEEEECcccccch--------------hhHHHHH-HcCCCC
Confidence 78999999999997643222 2345555543 579999999999985421 1112222 233334
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
.+++||++|.|++++++++++.+..
T Consensus 413 ~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 413 PYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred eEEEECCCCCCchHHHHHHHHhccc
Confidence 5789999999999999999998855
No 197
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.80 E-value=3.2e-18 Score=149.33 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=108.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc----------cc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP----------LS 76 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~----------~~ 76 (210)
+.++|+++|.+|||||||+|++.+........|-...+. ....+...+..+.+||+||..++..... .+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~-k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVER-KEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEee-EEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 357999999999999999999997654333233222221 1222344556788899999987754221 12
Q ss_pred --ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362 77 --YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (210)
Q Consensus 77 --~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (210)
...+|++++|+|.++.+.... +...+.+ .++|+++++||+|+.+... ...+.+.+.+.++.
T Consensus 81 l~~~~aD~vI~VvDat~ler~l~----l~~ql~e--~giPvIvVlNK~Dl~~~~~-----------i~id~~~L~~~LG~ 143 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNLY----LTLQLLE--LGIPCIVALNMLDIAEKQN-----------IRIDIDALSARLGC 143 (772)
T ss_pred HhccCCCEEEEEecCCcchhhHH----HHHHHHH--cCCCEEEEEEchhhhhccC-----------cHHHHHHHHHHhCC
Confidence 237899999999988654322 2223332 3699999999999975432 34556778888886
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 155 SYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 155 ~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
|++++||.+++|++++.+.+.+..
T Consensus 144 -pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 144 -PVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred -CEEEEEeecCCCHHHHHHHHHHhh
Confidence 899999999999999999887764
No 198
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=3.5e-18 Score=142.05 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=105.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC----------
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR---------- 73 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------- 73 (210)
...++|+++|.+|+|||||++++.+... ......++..........++ ..+.+|||||........
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3569999999999999999999997542 22333344333333444455 445779999975433221
Q ss_pred -cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362 74 -PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (210)
Q Consensus 74 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (210)
..+++.+|++++|+|++++.+..+. .+...+.. .+.|+++|+||+|+..... . ....+.........
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~--~~~~~ivv~NK~Dl~~~~~-------~-~~~~~~~~~~l~~~ 316 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDL--RIAGLALE--AGRALVIVVNKWDLVDEKT-------M-EEFKKELRRRLPFL 316 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCcEEEEEECccCCCHHH-------H-HHHHHHHHHhcccc
Confidence 1356789999999999988766553 34444433 3689999999999963321 0 00111111111222
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 153 GASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 153 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
+..+++++||+++.|++++++.+.+...
T Consensus 317 ~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 317 DYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3458999999999999999999877553
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.80 E-value=6.9e-19 Score=145.67 Aligned_cols=163 Identities=12% Similarity=0.040 Sum_probs=101.9
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHHcC--CCCCC------------CCC---------------ceeeeeeE-EEEEC
Q 028362 3 SSASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD------------YIP---------------TVFDNFSA-NVVAE 52 (210)
Q Consensus 3 ~~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~------------~~~---------------~~~~~~~~-~~~~~ 52 (210)
|+.+.+++|+++|.+++|||||+++|... ..... ... ..+.+... ...+.
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 46788999999999999999999999832 11110 000 01111111 12233
Q ss_pred CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc
Q 028362 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 132 (210)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 132 (210)
...+.+.+||+||+++|.......+..+|++++|+|++++.++......++..+... ...|+++++||+|+.....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~--- 156 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDE--- 156 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccH---
Confidence 455788999999998886655556788999999999987322222112222233222 2246899999999965211
Q ss_pred CCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHH
Q 028362 133 DHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF 172 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 172 (210)
.......+++..+....+. .+++++||++|.|+++..
T Consensus 157 ---~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 157 ---KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ---HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 0000233455556555553 478999999999998744
No 200
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.80 E-value=5.8e-19 Score=146.08 Aligned_cols=160 Identities=14% Similarity=0.049 Sum_probs=102.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHc--CCCCCC-----------------------------CCCceeeeeeEEEEECC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPTD-----------------------------YIPTVFDNFSANVVAEG 53 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 53 (210)
.+..++|+++|..++|||||+++|.. +..... .......+.. ...+..
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~-~~~~~~ 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA-HWKFET 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE-EEEEcc
Confidence 56789999999999999999999985 222210 0011111111 122334
Q ss_pred EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHH-HHHHHHHHhccCCCCcEEEEeeCccccccccccc
Q 028362 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 132 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 132 (210)
..+.+.+||+||+++|.......+..+|++++|+|++++++.... ...++..... ....|+++++||+|+.+...
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~~~~~iIVviNK~Dl~~~~~--- 158 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-LGINQLIVAINKMDSVNYDE--- 158 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-cCCCeEEEEEEChhccCccH---
Confidence 457889999999998866555567899999999999987433111 1111222222 22357999999999964211
Q ss_pred CCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHH
Q 028362 133 DHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF 172 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 172 (210)
.......+++..++...+. .+++++||+++.|+++.+
T Consensus 159 ---~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 159 ---EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 0001234566667776653 478999999999998743
No 201
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=4.3e-18 Score=121.03 Aligned_cols=158 Identities=20% Similarity=0.212 Sum_probs=118.1
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCC--------CCCCC----CceeeeeeEEEEECCEEEEEEEEeCCCcccccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKF--------PTDYI----PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR 71 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~--------~~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 71 (210)
......||++.|+-++||||++++++.... ...+. .|...+|..... +....+.++++|||++|+-
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--DEDTGVHLFGTPGQERFKF 83 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--cCcceEEEecCCCcHHHHH
Confidence 445778999999999999999999997653 11111 122233322222 2335678899999999999
Q ss_pred cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (210)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (210)
+|..+.+++.++|+++|.+.+..+ +. ..++..+....+ +|++|..||.|+.... ..+...++...
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~------------ppe~i~e~l~~ 148 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDAL------------PPEKIREALKL 148 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCC------------CHHHHHHHHHh
Confidence 999999999999999999999888 44 567777766544 9999999999998874 44444444443
Q ss_pred c-CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 152 I-GASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 152 ~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
. -..+.++++|.++++..+.+..+...
T Consensus 149 ~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 149 ELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ccCCCceeeeecccchhHHHHHHHHHhh
Confidence 3 13488999999999999988887766
No 202
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.79 E-value=2.6e-19 Score=146.56 Aligned_cols=172 Identities=24% Similarity=0.384 Sum_probs=129.4
Q ss_pred CC-CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362 1 MA-SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (210)
Q Consensus 1 m~-~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 79 (210)
|+ ....+.+||+|+|+.|||||+||-.+....|.+. .|.....+.....+....+-.++.|++..++-+.....-++.
T Consensus 1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~-VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eirk 79 (625)
T KOG1707|consen 1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA-VPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRK 79 (625)
T ss_pred CCCccCccceEEEEECCCCccHHHHHHHHHhhhcccc-ccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhh
Confidence 55 3455789999999999999999999999988665 343333333333333334457889998776665555667889
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHH-HHHHHHHc-CC
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRKQI-GA 154 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~ 154 (210)
||++.+||+++++++++.+...|+..+.+.. .++|+|+||||+|....... +.+. ..-+..++ .+
T Consensus 80 A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~----------s~e~~~~pim~~f~Ei 149 (625)
T KOG1707|consen 80 ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN----------SDEVNTLPIMIAFAEI 149 (625)
T ss_pred cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc----------chhHHHHHHHHHhHHH
Confidence 9999999999999999999999999999987 68999999999999877541 1111 11111111 23
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 155 SYYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
..+++|||++..++.++|......+..+-
T Consensus 150 EtciecSA~~~~n~~e~fYyaqKaVihPt 178 (625)
T KOG1707|consen 150 ETCIECSALTLANVSELFYYAQKAVIHPT 178 (625)
T ss_pred HHHHhhhhhhhhhhHhhhhhhhheeeccC
Confidence 45789999999999999998888887653
No 203
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.78 E-value=1.7e-18 Score=120.41 Aligned_cols=136 Identities=21% Similarity=0.232 Sum_probs=99.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCc----ccccccCcccccCccEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ----EDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~~~~i~ 85 (210)
||+++|+.|+|||||+++|.+.... +..|....| . =.++||||. ..+.........+||.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~------~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEY------Y-----DNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEe------c-----ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 7999999999999999999987642 222222221 1 134899994 2333333345668999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|.|.+++.+...- .+...+ +.|+|-|.||+|+..+. ...+.+.++.+..|....|++|+.++
T Consensus 70 l~dat~~~~~~pP--~fa~~f-----~~pvIGVITK~Dl~~~~-----------~~i~~a~~~L~~aG~~~if~vS~~~~ 131 (143)
T PF10662_consen 70 LQDATEPRSVFPP--GFASMF-----NKPVIGVITKIDLPSDD-----------ANIERAKKWLKNAGVKEIFEVSAVTG 131 (143)
T ss_pred EecCCCCCccCCc--hhhccc-----CCCEEEEEECccCccch-----------hhHHHHHHHHHHcCCCCeEEEECCCC
Confidence 9999987654332 222222 57999999999998433 46778888888889888899999999
Q ss_pred CCHHHHHHHHH
Q 028362 166 QNVKAVFDAAI 176 (210)
Q Consensus 166 ~~i~~~~~~i~ 176 (210)
+||+++.++|-
T Consensus 132 eGi~eL~~~L~ 142 (143)
T PF10662_consen 132 EGIEELKDYLE 142 (143)
T ss_pred cCHHHHHHHHh
Confidence 99999998763
No 204
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=6.6e-18 Score=135.86 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=108.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc---------ccCcccc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN---------RLRPLSY 77 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~ 77 (210)
..|+|+|-||||||||+|||.+.+. .+.+..++.+.........+.. |.++||+|-+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 6799999999999999999998764 3444445555555555556644 7889999976432 2333457
Q ss_pred cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (210)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
..||++|||+|....-+-.+ +.+.+.+. ..++|+++|+||+|..... +...+| -.+|....
T Consensus 82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr--~~~kpviLvvNK~D~~~~e--------------~~~~ef-yslG~g~~ 142 (444)
T COG1160 82 EEADVILFVVDGREGITPAD--EEIAKILR--RSKKPVILVVNKIDNLKAE--------------ELAYEF-YSLGFGEP 142 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--hcCCCEEEEEEcccCchhh--------------hhHHHH-HhcCCCCc
Confidence 78999999999965433322 34444554 2469999999999986322 122333 34566678
Q ss_pred EEeccCCCCCHHHHHHHHHHHHh
Q 028362 158 IECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 158 ~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
+.+||..|.|+.++++++++.+.
T Consensus 143 ~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 143 VPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred eEeehhhccCHHHHHHHHHhhcC
Confidence 89999999999999999999984
No 205
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.77 E-value=1.4e-17 Score=141.79 Aligned_cols=165 Identities=19% Similarity=0.154 Sum_probs=101.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----ceeeeeeEEEEE---CCEEE----------EEEEEeCCCccc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP----TVFDNFSANVVA---EGTTV----------NLGLWDTAGQED 68 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~----------~~~i~D~~G~~~ 68 (210)
.++..|+++|.+++|||||+++|.+......... +.+.++...... .+..+ .+++|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4667899999999999999999986544322221 222211110000 11111 168899999999
Q ss_pred ccccCcccccCccEEEEEEECCC---hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCcc-----
Q 028362 69 YNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV----- 140 (210)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~----- 140 (210)
|..++...+..+|++++|+|+++ +.++..+ . .+.. .++|+++++||+|+................
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-N----ILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-H----HHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99888888889999999999987 5555443 2 2222 478999999999985321100000000000
Q ss_pred -CHH-------HHHHHHHH--------------cCCcEEEEeccCCCCCHHHHHHHHHH
Q 028362 141 -TTA-------QGEELRKQ--------------IGASYYIECSSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 141 -~~~-------~~~~~~~~--------------~~~~~~~~~Sa~~~~~i~~~~~~i~~ 177 (210)
..+ +....... .+..+++++||+++.|+++++..+..
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 000 01111111 13357899999999999999988764
No 206
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.77 E-value=7.4e-18 Score=121.93 Aligned_cols=153 Identities=18% Similarity=0.120 Sum_probs=94.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEECCEEEEEEEEeCCCccc----------ccccCccccc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQED----------YNRLRPLSYR 78 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 78 (210)
.|+++|.+|+|||||++.+.++.+.....++.+.+.... ...++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999996555444444433222221 22222 788999999533 2223333333
Q ss_pred ---CccEEEEEEECCChhHHHH-HHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH-HcC
Q 028362 79 ---GADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-QIG 153 (210)
Q Consensus 79 ---~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 153 (210)
+.+++++++|..+..+... ....|+.. .+.|+++|+||+|+..... ............+ ...
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-----~~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~ 144 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-----LGIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEI 144 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-----cCCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccC
Confidence 4568889999876532221 11233333 2589999999999954321 0011122222222 234
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
..+++++||+++.|++++++++.+.
T Consensus 145 ~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCceEEEecCCCCCHHHHHHHHHHh
Confidence 4578899999999999999998764
No 207
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=3.6e-17 Score=131.64 Aligned_cols=157 Identities=21% Similarity=0.242 Sum_probs=113.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc----------
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP---------- 74 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~---------- 74 (210)
..+||+|+|-|+||||||+|++.+.. .......|+.+.+......+++.+ .++||+|-.+-.....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~--~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKY--VLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEE--EEEECCCCCcccccccceEEEeehhh
Confidence 56999999999999999999999765 334445566666666677777655 5599999654322211
Q ss_pred -ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHH----HHHHHH
Q 028362 75 -LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA----QGEELR 149 (210)
Q Consensus 75 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~ 149 (210)
..+..++++++|+|++.+-+-++ ......+.+ ...+++||+||+|+..... ...+ ++....
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~--~g~~~vIvvNKWDl~~~~~----------~~~~~~k~~i~~~l 320 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQD--LRIAGLIEE--AGRGIVIVVNKWDLVEEDE----------ATMEEFKKKLRRKL 320 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHH--HHHHHHHHH--cCCCeEEEEEccccCCchh----------hHHHHHHHHHHHHh
Confidence 23567999999999988766555 355566555 4689999999999876532 2232 333333
Q ss_pred HHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 150 KQIGASYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 150 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
...+..+.+.+||+++.+++++|+++....
T Consensus 321 ~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 321 PFLDFAPIVFISALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred ccccCCeEEEEEecCCCChHHHHHHHHHHH
Confidence 444566889999999999999999887654
No 208
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.76 E-value=6.4e-18 Score=138.84 Aligned_cols=166 Identities=17% Similarity=0.115 Sum_probs=104.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC---CCC--Cceeeee-----------------eEEEEECC------EEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT---DYI--PTVFDNF-----------------SANVVAEG------TTVN 57 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~---~~~--~~~~~~~-----------------~~~~~~~~------~~~~ 57 (210)
+..++|+++|..++|||||+++|....... +.. -|....+ ......++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 567999999999999999999997432111 100 0111110 00000011 1467
Q ss_pred EEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCC
Q 028362 58 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 137 (210)
Q Consensus 58 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 137 (210)
+++||+||+++|...+......+|++++|+|++++...... ...+..+... ...|+++++||+|+.....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~-------- 151 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEII-GIKNIVIVQNKIDLVSKEK-------- 151 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHHc-CCCeEEEEEEccccCCHHH--------
Confidence 89999999999988777778889999999999864301111 2222233222 2347899999999975321
Q ss_pred CccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 138 VPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
.....+++..+.... ...+++++||+++.|++++++++...+..
T Consensus 152 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 152 ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 001123344444332 12488999999999999999999887653
No 209
>PRK10218 GTP-binding protein; Provisional
Probab=99.75 E-value=4.5e-17 Score=138.71 Aligned_cols=164 Identities=13% Similarity=0.084 Sum_probs=112.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc--CCCCCCC------------CCceeeeee-EEEEECCEEEEEEEEeCCCcccccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS--NKFPTDY------------IPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNR 71 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~ 71 (210)
..-+|+++|..++|||||+++|.. +.+.... ..+.+.++. ....+....+.+.+||+||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 457899999999999999999996 4443321 112222222 2233445568899999999999999
Q ss_pred cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (210)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (210)
.+..+++.+|++++|+|+++....+. ..++..+.. .++|.++++||+|+..... ....+++..+...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt--~~~l~~a~~--~gip~IVviNKiD~~~a~~---------~~vl~ei~~l~~~ 150 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT--RFVTKKAFA--YGLKPIVVINKVDRPGARP---------DWVVDQVFDLFVN 150 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH--HHHHHHHHH--cCCCEEEEEECcCCCCCch---------hHHHHHHHHHHhc
Confidence 99999999999999999987643332 233333322 3689999999999875421 0122333333222
Q ss_pred cC------CcEEEEeccCCCC----------CHHHHHHHHHHHHhCCc
Q 028362 152 IG------ASYYIECSSKTQQ----------NVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 152 ~~------~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~ 183 (210)
.+ ..|++.+||++|. ++..+++.+++.+..+.
T Consensus 151 l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 151 LDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred cCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 11 1478999999998 58899998888887653
No 210
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.75 E-value=3e-17 Score=140.44 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=102.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC---CCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
-|+++|..++|||||+++|.+. .+.++.......+.............+.+||+||+++|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 4789999999999999999853 2333322222222221111111223578899999999976666678899999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC--CcEEEEeccC
Q 028362 87 FSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYYIECSSK 163 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 163 (210)
+|+++...-+. .+.+..+... ++| +++|+||+|+.+... .....+++..+....+ ..+++++||+
T Consensus 82 Vda~eg~~~qT--~ehl~il~~l--gi~~iIVVlNKiDlv~~~~--------~~~v~~ei~~~l~~~~~~~~~ii~VSA~ 149 (614)
T PRK10512 82 VACDDGVMAQT--REHLAILQLT--GNPMLTVALTKADRVDEAR--------IAEVRRQVKAVLREYGFAEAKLFVTAAT 149 (614)
T ss_pred EECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEECCccCCHHH--------HHHHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence 99987422111 2223333322 355 579999999965321 0012344555554444 2589999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028362 164 TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~ 181 (210)
+|.|++++++.+.+....
T Consensus 150 tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 150 EGRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCCHHHHHHHHHhhcc
Confidence 999999999999875543
No 211
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.74 E-value=2.3e-17 Score=135.61 Aligned_cols=168 Identities=17% Similarity=0.100 Sum_probs=103.6
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----CCceeeee-----------------eEEEEEC--C----E
Q 028362 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-----IPTVFDNF-----------------SANVVAE--G----T 54 (210)
Q Consensus 3 ~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~-----~~~~~~~~-----------------~~~~~~~--~----~ 54 (210)
...+..++|+++|..++|||||+.+|.....+... -.|....+ ......+ + .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 45678899999999999999999999653211110 01111111 0000011 0 1
Q ss_pred EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh-HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC
Q 028362 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 133 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~ 133 (210)
...+.+||+||+++|..........+|++++|+|++++. .-+. ...+..+... ...|+++|+||+|+.+...
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t--~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~---- 156 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT--KEHLMALDII-GIKNIVIVQNKIDLVSKER---- 156 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH--HHHHHHHHHc-CCCcEEEEEEeeccccchh----
Confidence 367899999999988665444556689999999998642 1111 1112222221 2246899999999965321
Q ss_pred CCCCCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 134 HPGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
.....+++..+...+ ...+++++||+++.|++++++++.+.+..
T Consensus 157 ----~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 157 ----ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ----HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 001123444444332 12488999999999999999999887644
No 212
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.74 E-value=3.9e-17 Score=131.80 Aligned_cols=153 Identities=23% Similarity=0.259 Sum_probs=109.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc--------cc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP--------LS 76 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~ 76 (210)
.-++++++|.||||||||+|.|.+.. .......|+.+.....+.++| +.+.+.||+|..+.....+ ..
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 34799999999999999999999765 334545566665666667777 6677799999876543322 24
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
+..||.+++|+|.+.+.+-.+. ..+. ....+.|+++|.||.|+..... .... ...+-.+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~---------------~~~~-~~~~~~~ 352 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE---------------LESE-KLANGDA 352 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc---------------cchh-hccCCCc
Confidence 7789999999999986332222 2222 2336799999999999977532 1111 1112226
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.+.+|++++.|++.+.+.+.+.+...
T Consensus 353 ~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 353 IISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred eEEEEecCccCHHHHHHHHHHHHhhc
Confidence 89999999999999999998877665
No 213
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.74 E-value=1.2e-17 Score=125.56 Aligned_cols=153 Identities=17% Similarity=0.109 Sum_probs=92.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCC------------------------CCCc---eeeeeeE-EEEECCEEEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK--FPTD------------------------YIPT---VFDNFSA-NVVAEGTTVNLG 59 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~--~~~~------------------------~~~~---~~~~~~~-~~~~~~~~~~~~ 59 (210)
||+++|.+|+|||||+++|+... .... ..+. .+.+... ...+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999997421 1100 0000 0001000 011122335678
Q ss_pred EEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCc
Q 028362 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP 139 (210)
Q Consensus 60 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~ 139 (210)
+|||||+++|.......++.+|++++|+|++++..-.. ......+... ...++++|+||+|+..... ....
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~-~~~~iIvviNK~D~~~~~~------~~~~ 151 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL-GIRHVVVAVNKMDLVDYSE------EVFE 151 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc-CCCcEEEEEEchhcccCCH------HHHH
Confidence 89999998886655667889999999999987642221 1222222222 2245788999999964211 0000
Q ss_pred cCHHHHHHHHHHcCC--cEEEEeccCCCCCHHHH
Q 028362 140 VTTAQGEELRKQIGA--SYYIECSSKTQQNVKAV 171 (210)
Q Consensus 140 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~ 171 (210)
....+...+...++. .+++++||+++.|+++.
T Consensus 152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 123445555666663 35899999999999753
No 214
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=1.5e-17 Score=125.50 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=78.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-----------CCc------eeeeee---EEEEE---CCEEEEEEEEeCCCc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDY-----------IPT------VFDNFS---ANVVA---EGTTVNLGLWDTAGQ 66 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~-----------~~~------~~~~~~---~~~~~---~~~~~~~~i~D~~G~ 66 (210)
+|+++|+.|+|||||+++|......... ..+ .+.++. ..... ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999965432110 000 011111 01111 356789999999999
Q ss_pred ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (210)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 125 (210)
.+|......++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccC
Confidence 9998878888999999999999987765543 344444332 358999999999985
No 215
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.73 E-value=3.6e-17 Score=139.37 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=109.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCCCCCC------------ceeeeee-EEEEECCEEEEEEEEeCCCcccccccCc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS--NKFPTDYIP------------TVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRP 74 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~--~~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 74 (210)
+|+++|..++|||||+++|+. +.+...... ..+.++. ....+...++.+.+|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999985 333322110 0112221 1122333457889999999999998888
Q ss_pred ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-
Q 028362 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG- 153 (210)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (210)
.+++.+|++++|+|+++...-+ ...|+..+.. .++|+++++||+|+..... ....++...+...++
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~q--T~~~l~~a~~--~~ip~IVviNKiD~~~a~~---------~~v~~ei~~l~~~~g~ 149 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQ--TRFVLKKALE--LGLKPIVVINKIDRPSARP---------DEVVDEVFDLFAELGA 149 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHH--HHHHHHHHHH--CCCCEEEEEECCCCCCcCH---------HHHHHHHHHHHHhhcc
Confidence 8999999999999998753222 2455555444 3689999999999865321 012233333332221
Q ss_pred -----CcEEEEeccCCCC----------CHHHHHHHHHHHHhCCc
Q 028362 154 -----ASYYIECSSKTQQ----------NVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 154 -----~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~ 183 (210)
..|++++||+++. |++.+|+.+++.+..+.
T Consensus 150 ~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 150 DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 1378899999995 79999999999887653
No 216
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.73 E-value=5.5e-17 Score=124.06 Aligned_cols=114 Identities=16% Similarity=0.089 Sum_probs=78.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC--C------CCCC-----CC---ceeeeee-EEEEECCEEEEEEEEeCCCccccccc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK--F------PTDY-----IP---TVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRL 72 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~--~------~~~~-----~~---~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~ 72 (210)
+|+++|..|+|||||+++|.... . ...+ .+ ..+..+. ....+....+.+.+||+||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999998531 1 0000 00 0011111 11222334578899999999999888
Q ss_pred CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
+..+++.+|++++|+|.++..... ...+...+.. .++|+++++||+|+...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~--~~~~~~~~~~--~~~P~iivvNK~D~~~a 131 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ--TRILWRLLRK--LNIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH--HHHHHHHHHH--cCCCEEEEEECccccCC
Confidence 888999999999999998765432 2455555544 36899999999998753
No 217
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.73 E-value=2.5e-17 Score=125.75 Aligned_cols=175 Identities=15% Similarity=0.130 Sum_probs=109.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc------c------ccc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED------Y------NRL 72 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~------~~~ 72 (210)
..+.+.|+++|.||||||||.|.+.+.+..........+.....-.+......+.++||||.-. + .+.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 4688999999999999999999999988654433332223333233444567899999999421 1 112
Q ss_pred CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC-----CCCCCc-cCHHHHH
Q 028362 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD-----HPGLVP-VTTAQGE 146 (210)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-----~~~~~~-~~~~~~~ 146 (210)
....+..||.+++|+|+++.....+ ...+..+..+ .++|-++|+||.|........-. ..+... ...+..+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 2234667999999999997443332 2334444444 47899999999997765331110 000000 0111222
Q ss_pred HHHHHc------------CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 147 ELRKQI------------GASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 147 ~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.+...- +...+|.+||++|+||+++-+++..++...
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 221111 122368899999999999999999887644
No 218
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1e-17 Score=116.84 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=115.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
++.=|++++|..|+|||||++.|.+.+.. .+.||.-.+. ....+.+ ..|+.+|.+|+...++.|..++..++++++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTS-E~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS-EELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCCh-HHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 34568999999999999999999988763 3455553331 1234444 788999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH------HHHHcC-----
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE------LRKQIG----- 153 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----- 153 (210)
.+|+.|.+.+.+....+-..+.... ..+|+++.+||+|.+... +.++... ++-..+
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~------------se~~l~~~l~l~~~t~~~~~v~~~ 161 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA------------SEDELRFHLGLSNFTTGKGKVNLT 161 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc------------cHHHHHHHHHHHHHhccccccccc
Confidence 9999999999988665555555443 689999999999998763 2222221 111111
Q ss_pred -----CcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 154 -----ASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 154 -----~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
....+.+|...+.+--+.|.|+.+.
T Consensus 162 ~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 162 DSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 1234568888888877888777654
No 219
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.73 E-value=9.6e-17 Score=121.67 Aligned_cols=155 Identities=17% Similarity=0.143 Sum_probs=96.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCce------------e---------eeee--EE--------------EEEC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV------------F---------DNFS--AN--------------VVAE 52 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~------------~---------~~~~--~~--------------~~~~ 52 (210)
||+++|+.++|||||+++|..+.+....-... + ..+. .. ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999766643111000 0 0000 00 0111
Q ss_pred CEEEEEEEEeCCCcccccccCcccc--cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccc
Q 028362 53 GTTVNLGLWDTAGQEDYNRLRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130 (210)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~ 130 (210)
.....+.++|+||+++|.......+ ..+|++++|+|+.....-. ...++..+.. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~--d~~~l~~l~~--~~ip~ivvvNK~D~~~~~~- 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM--TKEHLGLALA--LNIPVFVVVTKIDLAPANI- 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH--HHHHHHHHHH--cCCCEEEEEECccccCHHH-
Confidence 2345788899999998855433334 3689999999987654322 2344555444 3589999999999864421
Q ss_pred ccCCCCCCccCHHHHHHHHHH-------------------------cCCcEEEEeccCCCCCHHHHHHHHH
Q 028362 131 LADHPGLVPVTTAQGEELRKQ-------------------------IGASYYIECSSKTQQNVKAVFDAAI 176 (210)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~Sa~~~~~i~~~~~~i~ 176 (210)
.....+++.++... ....|++.+||.+|+|++++...|.
T Consensus 156 -------~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 156 -------LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred -------HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 00111222222211 1134889999999999999987664
No 220
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.71 E-value=3.1e-16 Score=120.42 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=105.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-CCCCce-eeeeeEEEEECCEEEEEEEEeCCCcccccc----cCccc---ccCc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNR----LRPLS---YRGA 80 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~~~~---~~~~ 80 (210)
.|-++|.||+|||||++++++.+-.- .|..|+ ..... ....+....+++-|+||..+-.. +-..| +..+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG--~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG--TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc--eeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 45699999999999999999876432 222222 11111 12223334489999999654332 22223 4568
Q ss_pred cEEEEEEECCCh---hHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362 81 DVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (210)
Q Consensus 81 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (210)
+.++||+|++.+ .-++.+ +.+..+++.+. .+.|.++|+||+|+++.. ...+.+++..+..
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~lq~ 341 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRLQN 341 (366)
T ss_pred ceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHcCC
Confidence 999999999988 666655 45555555443 689999999999996432 2235777787776
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHH
Q 028362 155 SYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 155 ~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
...+++||++++|++++++.|.+.
T Consensus 342 ~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CcEEEeeeccccchHHHHHHHhhc
Confidence 568999999999999999887653
No 221
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.71 E-value=1.2e-16 Score=119.18 Aligned_cols=169 Identities=12% Similarity=0.093 Sum_probs=97.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee-eeeE--EEEECCEEEEEEEEeCCCcccccccC-----cccccC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSA--NVVAEGTTVNLGLWDTAGQEDYNRLR-----PLSYRG 79 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~~~ 79 (210)
.+||+++|.+|+|||||+|.+.+........++.+. .... ..........+.+||+||........ ...+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 379999999999999999999986543322222211 0010 01111112368899999975432222 222567
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCC-CCccCHHHHHHHHH----H--c
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG-LVPVTTAQGEELRK----Q--I 152 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~--~ 152 (210)
+|++++|.+. .+......|+..+... +.|+++|+||+|+............ ......+...+.+. . .
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 8888887432 2333334566666654 5799999999999543221100000 00011122222222 2 1
Q ss_pred CCcEEEEeccC--CCCCHHHHHHHHHHHHhCC
Q 028362 153 GASYYIECSSK--TQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 153 ~~~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~ 182 (210)
...+++.+|+. .+.++..+.+.|...+.+.
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 23477889998 5689999999998888654
No 222
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.71 E-value=2.3e-16 Score=117.16 Aligned_cols=150 Identities=19% Similarity=0.182 Sum_probs=94.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--------CC---CCCC---ceeeeeeE-EEEECCEEEEEEEEeCCCccccccc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKF--------PT---DYIP---TVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRL 72 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~--------~~---~~~~---~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~ 72 (210)
+++|+++|..++|||||+++|....- .. ...+ ..+.+... ..........+.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 58999999999999999999985310 00 0000 01111111 1222334467788999999888766
Q ss_pred CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (210)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (210)
....+..+|++++|+|+...-.-. ....+..+.. .++| ++++.||+|+..... ......+++..+...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~--~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~-------~~~~~~~~i~~~l~~ 150 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ--TREHLLLARQ--VGVPYIVVFLNKADMVDDEE-------LLELVEMEVRELLSK 150 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH--HHHHHHHHHH--cCCCcEEEEEeCCCCCCcHH-------HHHHHHHHHHHHHHH
Confidence 666788999999999997653222 2333444443 2466 778899999863221 001123455555555
Q ss_pred cCC----cEEEEeccCCCCCH
Q 028362 152 IGA----SYYIECSSKTQQNV 168 (210)
Q Consensus 152 ~~~----~~~~~~Sa~~~~~i 168 (210)
.+. .+++++||.+|.|+
T Consensus 151 ~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 151 YGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred hcccccCCeEEEeeCccccCC
Confidence 542 58999999999885
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.69 E-value=6.8e-17 Score=122.47 Aligned_cols=155 Identities=14% Similarity=0.025 Sum_probs=91.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC--CCCC--------------C----------CCCc---eeeeee-EEEEECCEEEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN--KFPT--------------D----------YIPT---VFDNFS-ANVVAEGTTVNLG 59 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~--~~~~--------------~----------~~~~---~~~~~~-~~~~~~~~~~~~~ 59 (210)
+|+++|..++|||||+.+|+.. .... . ..+. .+.+.. ....+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999732 1110 0 0000 001100 0112223457889
Q ss_pred EEeCCCcccccccCcccccCccEEEEEEECCChhH-----H-HHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC
Q 028362 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS-----Y-ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 133 (210)
Q Consensus 60 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-----~-~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~ 133 (210)
+||+||+..|...+...+..+|++++|+|+++... . ......+ ..... ....|+++++||+|+..... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~iiivvNK~Dl~~~~~---~ 155 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-LGVKQLIVAVNKMDDVTVNW---S 155 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-cCCCeEEEEEEccccccccc---c
Confidence 99999998887666667788999999999988421 1 1111222 22222 22468999999999973210 0
Q ss_pred CCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 028362 134 HPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA 170 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 170 (210)
........+++..+....+. .+++++||++|.||++
T Consensus 156 -~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 156 -EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred -HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 00000122333334444433 5799999999999873
No 224
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.69 E-value=9.9e-16 Score=128.62 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=113.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCc------cc-c-
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRP------LS-Y- 77 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~------~~-~- 77 (210)
+.++|+++|+||||||||+|++.+.+..-.+.|-...+- .......+ ..+++.|+||-........ .+ +
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 346799999999999999999998776555555543332 22344444 4477899999655432211 12 2
Q ss_pred cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (210)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
.++|+++-|+|+++-+.-..+ -++.++ -+.|++++.|+.|...... ..-+.+++.+.+|. |.
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyl---tlQLlE---~g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PV 141 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYL---TLQLLE---LGIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PV 141 (653)
T ss_pred CCCCEEEEEcccchHHHHHHH---HHHHHH---cCCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CE
Confidence 347999999999887754433 233333 3789999999999988753 45567788889997 99
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 158 IECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
+++||+.|.|++++...+.+....+.
T Consensus 142 v~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 142 VPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred EEEEeecCCCHHHHHHHHHHhccccc
Confidence 99999999999999999987665544
No 225
>COG2262 HflX GTPases [General function prediction only]
Probab=99.69 E-value=6e-16 Score=122.94 Aligned_cols=158 Identities=18% Similarity=0.148 Sum_probs=110.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc---------cccCcc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPL 75 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~ 75 (210)
+....|.++|..|+|||||+|++.+.... .....++-+.....+...+ +..+.+-||.|..+- ++...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE- 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE- 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-
Confidence 45689999999999999999999965432 3333333333344455543 345667999996432 22222
Q ss_pred cccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (210)
-...+|.++.|+|+++|.....+ ......+.... .++|+|+|.||+|+.... ..........
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~- 330 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGS- 330 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcC-
Confidence 25579999999999999666555 66667777665 679999999999986442 1122222222
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 155 SYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
...+.+||+++.|++.+.+.|...+...
T Consensus 331 ~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 331 PNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 1467899999999999999999888743
No 226
>PRK12736 elongation factor Tu; Reviewed
Probab=99.68 E-value=9.9e-16 Score=125.50 Aligned_cols=166 Identities=19% Similarity=0.178 Sum_probs=104.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------CCCC---ceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPT-----------DYIP---TVFDNFSA-NVVAEGTTVNLGLWDTAGQED 68 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~-----------~~~~---~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~ 68 (210)
..++.++|+++|..++|||||+++|....... ...+ ..+.+... ...+......+.+||+||+++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 35678999999999999999999998521100 0000 11111111 122333456778999999998
Q ss_pred ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (210)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (210)
|.......+..+|++++|+|+++...-.. ...+..+... ++| +|+++||+|+..... ......+++..
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~~~-------~~~~i~~~i~~ 156 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDDEE-------LLELVEMEVRE 156 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcchHH-------HHHHHHHHHHH
Confidence 86655556678999999999986432221 2333343332 577 678899999864321 00012235555
Q ss_pred HHHHcCC----cEEEEeccCCCC--------CHHHHHHHHHHHHh
Q 028362 148 LRKQIGA----SYYIECSSKTQQ--------NVKAVFDAAIKVVI 180 (210)
Q Consensus 148 ~~~~~~~----~~~~~~Sa~~~~--------~i~~~~~~i~~~~~ 180 (210)
+....+. .+++++||+++. +++++++.+.+.+.
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 5555543 489999999983 57788877777654
No 227
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.67 E-value=3.1e-16 Score=118.53 Aligned_cols=168 Identities=20% Similarity=0.283 Sum_probs=103.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC---CCceeeeeeEEEEECCEEEEEEEEeCCCcccccc-----cCcccccCcc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDY---IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-----LRPLSYRGAD 81 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~~ 81 (210)
||+++|+.++||||+.+.+..+..+... .+|... .....-....+.|.+||+|||..+-. .....++++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~v--e~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDV--EKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SE--EEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCc--eEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 7999999999999999888866533221 123322 22222234456889999999976633 3456789999
Q ss_pred EEEEEEECCChhHHHHH--HHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC--CcEE
Q 028362 82 VFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYY 157 (210)
Q Consensus 82 ~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (210)
++|||+|+.+.+-.+.+ ....+..+....|++.+-++.+|.|+..+.... +......+.+.+.+...+ ...+
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~----~~~~~~~~~i~~~~~~~~~~~~~~ 154 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDERE----EIFRDIQQRIRDELEDLGIEDITF 154 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHH----HHHHHHHHHHHHHHHHTT-TSEEE
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHH----HHHHHHHHHHHHHhhhccccceEE
Confidence 99999999844422222 234455566667899999999999986543200 000012233344444444 2367
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362 158 IECSSKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
+.||.-+ +.+.+++..+++.+....+
T Consensus 155 ~~TSI~D-~Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 155 FLTSIWD-ESLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp EEE-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred EeccCcC-cHHHHHHHHHHHHHcccHH
Confidence 8899888 6899999999999886533
No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=99.67 E-value=1e-15 Score=125.47 Aligned_cols=166 Identities=19% Similarity=0.184 Sum_probs=104.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcC-------CCCC----CCCC---ceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSN-------KFPT----DYIP---TVFDNFSA-NVVAEGTTVNLGLWDTAGQED 68 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~-------~~~~----~~~~---~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~ 68 (210)
..++.++|+++|..++|||||+++|... .+.. ...+ ..+.+... ...+......+.++|+||+++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 4567899999999999999999999852 1100 0000 01111111 122333445678999999988
Q ss_pred ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEE-EEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (210)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (210)
|.......+..+|++++|+|+.+...-+. ..++..+.. .++|.+ +++||+|+..... ......+++..
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~-------~~~~~~~ei~~ 156 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEecCCcchHH-------HHHHHHHHHHH
Confidence 86655566788999999999987432222 233333332 357855 5799999964321 01122345666
Q ss_pred HHHHcCC----cEEEEeccCCCC----------CHHHHHHHHHHHHh
Q 028362 148 LRKQIGA----SYYIECSSKTQQ----------NVKAVFDAAIKVVI 180 (210)
Q Consensus 148 ~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~~ 180 (210)
+...++. .+++++||.++. ++.++++.+.+.+.
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 6666542 578999999984 57777777776554
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.66 E-value=1.4e-15 Score=124.65 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=95.1
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCC-------CCC----CCCC---ceeeeee-EEEEECCEEEEEEEEeCCCccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNK-------FPT----DYIP---TVFDNFS-ANVVAEGTTVNLGLWDTAGQED 68 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~-------~~~----~~~~---~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~ 68 (210)
+.++.++|+++|..++|||||+++|.... +.. ...+ ..+.+.. ....++.....+.+||+||+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 45688999999999999999999997320 000 0000 0111111 1122344556788999999998
Q ss_pred ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEE-EEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (210)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (210)
|..........+|++++|+|+.+....+. ...+..+.. .++|.+ +++||+|+.+... ......+++..
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt--~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~-------~~~~~~~~i~~ 156 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE 156 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEEecccCCHHH-------HHHHHHHHHHH
Confidence 86655555677899999999987432222 233333332 256755 6899999865321 00012345666
Q ss_pred HHHHcCC----cEEEEeccCCCC
Q 028362 148 LRKQIGA----SYYIECSSKTQQ 166 (210)
Q Consensus 148 ~~~~~~~----~~~~~~Sa~~~~ 166 (210)
+...++. .+++++||.++.
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 157 LLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHhcCCCccCccEEECcccccc
Confidence 7776653 589999999874
No 230
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.66 E-value=3.9e-15 Score=118.56 Aligned_cols=129 Identities=14% Similarity=0.194 Sum_probs=88.8
Q ss_pred EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCCh----------hHHHHHHHHHHHHHhccC-CCCcEEEEeeCc
Q 028362 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKL 122 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~piilv~nK~ 122 (210)
..+.+.+||++||...+..|..++.+++++++|+|+++. ..+.+....+-..+.... .++|++|++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 457788999999999999999999999999999999874 445555445555555443 689999999999
Q ss_pred ccccccccccC------CCCCCccCHHHHHHHHHH-----c----CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 123 DLREDKHYLAD------HPGLVPVTTAQGEELRKQ-----I----GASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 123 D~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
|+..+.-...+ ...-.....+.+..+... . .....+.++|.+..++..+|+.+.+.+...
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 97655321110 000001233444433332 1 122345689999999999999998887654
No 231
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=9.9e-16 Score=123.26 Aligned_cols=165 Identities=18% Similarity=0.192 Sum_probs=117.0
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcC--CCC-----CCCCCce------eeee-----eEEEEE-CCEEEEEEEEeCC
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFP-----TDYIPTV------FDNF-----SANVVA-EGTTVNLGLWDTA 64 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~-----~~~~~~~------~~~~-----~~~~~~-~~~~~~~~i~D~~ 64 (210)
..++.-++.++-.-..|||||..|+... .+. .+...+. +.++ ...+.. ++++|.|+++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 3345567899999999999999999842 121 1111111 1222 222332 5688999999999
Q ss_pred CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHH
Q 028362 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 144 (210)
Q Consensus 65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 144 (210)
||-+|.......+..|.++++|+|++..-..+.+. +....++ .+.-++-|.||+|++..+. ..-
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlA-N~YlAle---~~LeIiPViNKIDLP~Adp------------erv 148 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPAADP------------ERV 148 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHH-HHHHHHH---cCcEEEEeeecccCCCCCH------------HHH
Confidence 99999998899999999999999999877666663 3333333 4678899999999987642 112
Q ss_pred HHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362 145 GEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 145 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
..+...-.| ....+.+|||+|.||+++++.+++.+..+.-
T Consensus 149 k~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 149 KQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred HHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 222222233 3456789999999999999999999987753
No 232
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.64 E-value=3.2e-16 Score=113.70 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=74.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEE-CCEEEEEEEEeCCCcccccccCcc---cccCccEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPL---SYRGADVF 83 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~~~~ 83 (210)
.-.|+|+|++|+|||+|+.+|..+...+...+. ..... ..+ ....-.+.++|+||+++.+..... +..++.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 357999999999999999999999665443333 22211 111 223346788999999998763333 47789999
Q ss_pred EEEEECCC-hhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccc
Q 028362 84 VLAFSLVS-RASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRED 127 (210)
Q Consensus 84 i~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~ 127 (210)
|||+|.+. +..+.++.+.++..+.... ..+|++|+.||+|+...
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999973 5566666566666555433 57899999999999765
No 233
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.63 E-value=1.4e-14 Score=113.20 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=87.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC----------CCCceeee-eeEEEEECCEEEEEEEEeCCCccccc------
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD----------YIPTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYN------ 70 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~------ 70 (210)
.++|+++|.+|+|||||+|+|.+..+... ..+|.... +...+..++..+.+++|||||..++.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998775433 23333222 23345567888999999999943321
Q ss_pred --------------------ccCcccccC--ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362 71 --------------------RLRPLSYRG--ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (210)
Q Consensus 71 --------------------~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 128 (210)
......+.+ +++++++++.+.. .+......++..+. ..+|+++|+||+|+....
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPE 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHH
Confidence 112133443 5677777776542 12111123344443 268999999999995432
Q ss_pred ccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
. .......+.+.+..+++ +++....
T Consensus 160 e--------~~~~k~~i~~~l~~~~i-~~~~~~~ 184 (276)
T cd01850 160 E--------LKEFKQRIMEDIEEHNI-KIYKFPE 184 (276)
T ss_pred H--------HHHHHHHHHHHHHHcCC-ceECCCC
Confidence 1 00244556677777776 5555444
No 234
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=1.4e-14 Score=105.42 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=101.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEECCEEEEEEEEeCCC----------cccccccCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAG----------QEDYNRLRP 74 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G----------~~~~~~~~~ 74 (210)
....-|+++|-+|||||||+|++.+++--.....|.+.+.... +.+++. +.++|+|| ++....+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 3557899999999999999999999763222222333332222 223332 67899999 334445555
Q ss_pred ccccC---ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362 75 LSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (210)
Q Consensus 75 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (210)
.|+.. -.++++++|+..+....+ ..+++.+.. .++|+++|+||+|...... ........++.
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D--~em~~~l~~--~~i~~~vv~tK~DKi~~~~-----------~~k~l~~v~~~ 163 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLD--REMIEFLLE--LGIPVIVVLTKADKLKKSE-----------RNKQLNKVAEE 163 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCeEEEEEccccCChhH-----------HHHHHHHHHHH
Confidence 55554 347888889866554433 355555555 4799999999999976532 11122333322
Q ss_pred cC----Cc-EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 152 IG----AS-YYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 152 ~~----~~-~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
+. .. .++..|+.++.|++++...|.+.+..
T Consensus 164 l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 164 LKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred hcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 22 11 16679999999999999888876643
No 235
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.4e-14 Score=118.34 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=115.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc--CCCCCC-CC----------CceeeeeeE-E---EEECCEEEEEEEEeCCCcccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS--NKFPTD-YI----------PTVFDNFSA-N---VVAEGTTVNLGLWDTAGQEDY 69 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~--~~~~~~-~~----------~~~~~~~~~-~---~~~~~~~~~~~i~D~~G~~~~ 69 (210)
+.-++.|+-.-..|||||..+|+. +..+.. .. ...+.++.. + ...+++.+.+.++|||||-+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 445789999999999999999984 211110 00 001222211 1 223478899999999999999
Q ss_pred cccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHH
Q 028362 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 149 (210)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (210)
.......+..++++|+|+|++..-..+.....|+ .++ .+..+|.|+||+|++..+. .....+..++.
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~l-Afe---~~L~iIpVlNKIDlp~adp---------e~V~~q~~~lF 205 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYL-AFE---AGLAIIPVLNKIDLPSADP---------ERVENQLFELF 205 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHH-HHH---cCCeEEEeeeccCCCCCCH---------HHHHHHHHHHh
Confidence 9999999999999999999998877777643343 333 3688999999999987642 01222333333
Q ss_pred HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 150 KQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 150 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
...+ .+.+.+||++|.|++++++++++.+..+.
T Consensus 206 ~~~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 206 DIPP-AEVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred cCCc-cceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 3333 37888999999999999999999987664
No 236
>CHL00071 tufA elongation factor Tu
Probab=99.63 E-value=6.1e-15 Score=121.41 Aligned_cols=152 Identities=19% Similarity=0.144 Sum_probs=96.2
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFP----------------TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE 67 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 67 (210)
+++..++|+++|.+++|||||+++|....-. .+..+....+.. ...+......+.+.|+||+.
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~-~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTA-HVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEcc-EEEEccCCeEEEEEECCChH
Confidence 4578899999999999999999999863110 000011111100 11223344567889999998
Q ss_pred cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHH
Q 028362 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 146 (210)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 146 (210)
+|.......+..+|++++|+|+.....-+ ....+..+.. .++| +|++.||+|+..... ......+++.
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~q--t~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~-------~~~~~~~~l~ 155 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQ--TKEHILLAKQ--VGVPNIVVFLNKEDQVDDEE-------LLELVELEVR 155 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHH--HHHHHHHHHH--cCCCEEEEEEEccCCCCHHH-------HHHHHHHHHH
Confidence 88666666778899999999997643222 1333334333 3578 778899999965321 0001234555
Q ss_pred HHHHHcCC----cEEEEeccCCCCC
Q 028362 147 ELRKQIGA----SYYIECSSKTQQN 167 (210)
Q Consensus 147 ~~~~~~~~----~~~~~~Sa~~~~~ 167 (210)
.+....+. .+++++||.++.|
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhccc
Confidence 55555542 5899999998864
No 237
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.62 E-value=8e-15 Score=113.99 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=77.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC--CCCCC--------CCCce----------eeee-eEEEEECCEEEEEEEEeCCCcc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN--KFPTD--------YIPTV----------FDNF-SANVVAEGTTVNLGLWDTAGQE 67 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~--~~~~~--------~~~~~----------~~~~-~~~~~~~~~~~~~~i~D~~G~~ 67 (210)
-+|+|+|.+|+|||||+++|... ..... ...+. +..+ .....+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 46999999999999999999842 11110 00000 0111 1112344456888999999999
Q ss_pred cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
+|.......++.+|++|+|+|+++..... ...+...... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~--~~~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ--TRKLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH--HHHHHHHHHh--cCCCEEEEEECCccCCC
Confidence 88776666789999999999998754322 1344444333 36899999999998654
No 238
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.62 E-value=2.1e-14 Score=113.85 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=54.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCC------CCCCceeeeeeEE----------------EEECC-EEEEEEEEeCCCc-
Q 028362 11 CVTVGDGAVGKTCMLICYTSNKFPT------DYIPTVFDNFSAN----------------VVAEG-TTVNLGLWDTAGQ- 66 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~----------------~~~~~-~~~~~~i~D~~G~- 66 (210)
|+++|.++||||||+++|.+..... ...|+.+..+... ..+++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999876432 1223332222110 00122 3477999999997
Q ss_pred ---ccccccCccc---ccCccEEEEEEECC
Q 028362 67 ---EDYNRLRPLS---YRGADVFVLAFSLV 90 (210)
Q Consensus 67 ---~~~~~~~~~~---~~~~~~~i~v~d~~ 90 (210)
++++.+...+ +++||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4455544444 88999999999997
No 239
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.62 E-value=4.7e-14 Score=108.95 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=101.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCceeeeeeEEEEECCEEEEEEEEeCCCcccc----c---ccCcccccC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----N---RLRPLSYRG 79 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~---~~~~~~~~~ 79 (210)
--+|+++|.|+||||||+++|.+...... |..|+-...-.-+ ..++..+++.|+||.-.- + ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l--~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGML--EYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceE--eecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 36899999999999999999998764322 2222211111112 334577888999984322 1 234567899
Q ss_pred ccEEEEEEECCChhH-HHHHHHH---------------------------------------------------------
Q 028362 80 ADVFVLAFSLVSRAS-YENVLKK--------------------------------------------------------- 101 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s-~~~~~~~--------------------------------------------------------- 101 (210)
||++++|.|+....+ .+-+..+
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986544 2222111
Q ss_pred --------HHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHH
Q 028362 102 --------WIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173 (210)
Q Consensus 102 --------~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 173 (210)
+...+......+|.+.|.||.|+. ..++...+.+.. ..+.+||..+.|++++.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~---------------~~e~~~~l~~~~---~~v~isa~~~~nld~L~e 282 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLP---------------GLEELERLARKP---NSVPISAKKGINLDELKE 282 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEeccccc---------------CHHHHHHHHhcc---ceEEEecccCCCHHHHHH
Confidence 111111111125889999999994 445566666555 568899999999999999
Q ss_pred HHHHHHh
Q 028362 174 AAIKVVI 180 (210)
Q Consensus 174 ~i~~~~~ 180 (210)
.|++.+.
T Consensus 283 ~i~~~L~ 289 (365)
T COG1163 283 RIWDVLG 289 (365)
T ss_pred HHHHhhC
Confidence 9999874
No 240
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.60 E-value=1.8e-14 Score=115.62 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=86.7
Q ss_pred EEEEEEEeCCCcccccccCcccccCccEEEEEEECCCh----------hHHHHHHHHHHHHHhccC-CCCcEEEEeeCcc
Q 028362 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKLD 123 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D 123 (210)
.+.+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+-..+.... .++|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 36678999999999999999999999999999999973 345555444555555433 6899999999999
Q ss_pred cccccccccC-----CCCCCccCHHHHHHHHHH-----cC-----CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 124 LREDKHYLAD-----HPGLVPVTTAQGEELRKQ-----IG-----ASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 124 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
+....-...+ +........+.+..+... .. ....+.++|.+..++..+|+.+...+...
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 8765321110 000011233333333222 11 12445688999999999999988877654
No 241
>PRK13351 elongation factor G; Reviewed
Probab=99.59 E-value=9.5e-15 Score=127.63 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=81.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC--C------CCC------------CCCceeeeeeEEEEECCEEEEEEEEeCCC
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNK--F------PTD------------YIPTVFDNFSANVVAEGTTVNLGLWDTAG 65 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~--~------~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 65 (210)
.+..+|+|+|..++|||||+++|.... . ... +..|..... .......+.+.+|||||
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~---~~~~~~~~~i~liDtPG 82 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA---TSCDWDNHRINLIDTPG 82 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce---EEEEECCEEEEEEECCC
Confidence 456899999999999999999998421 1 000 111111111 11222357889999999
Q ss_pred cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
+.+|...+..+++.+|++++|+|.++..+.... ..| ..+.. .++|+++++||+|+...
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADR--YGIPRLIFINKMDRVGA 140 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHh--cCCCEEEEEECCCCCCC
Confidence 999988888899999999999999887665543 333 33333 36899999999998754
No 242
>PRK00049 elongation factor Tu; Reviewed
Probab=99.59 E-value=2.4e-14 Score=117.34 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=101.9
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCC------C-----CCC---ceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPT------D-----YIP---TVFDNFSA-NVVAEGTTVNLGLWDTAGQED 68 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~------~-----~~~---~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~ 68 (210)
..+..++|+++|..++|||||+++|....... . ..+ ..+.+... ...+......+.++|+||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 34678999999999999999999998621100 0 000 01111111 122333445678899999988
Q ss_pred ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEE-EEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (210)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (210)
|.......+..+|++++|+|+.....-. ...++..+.. .++|.+ +++||+|+..... .......++..
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~q--t~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~-------~~~~~~~~i~~ 156 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQ--TREHILLARQ--VGVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchH--HHHHHHHHHH--cCCCEEEEEEeecCCcchHH-------HHHHHHHHHHH
Confidence 8665566778999999999997653322 2334444443 357876 5799999964321 00012234444
Q ss_pred HHHHcC----CcEEEEeccCCCC----------CHHHHHHHHHHHH
Q 028362 148 LRKQIG----ASYYIECSSKTQQ----------NVKAVFDAAIKVV 179 (210)
Q Consensus 148 ~~~~~~----~~~~~~~Sa~~~~----------~i~~~~~~i~~~~ 179 (210)
+....+ ..+++++||.++. ++..+++.+.+.+
T Consensus 157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 444433 2588999999865 4566776666654
No 243
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.59 E-value=3.9e-14 Score=110.16 Aligned_cols=160 Identities=20% Similarity=0.203 Sum_probs=102.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCC-CCCCce-eeeeeEEEEECCEEEEEEEEeCCCcccc----cccCccc---ccCcc
Q 028362 11 CVTVGDGAVGKTCMLICYTSNKFPT-DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRPLS---YRGAD 81 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~~ 81 (210)
|-++|.|++|||||++.++..+-.- .|.-|+ ...... +.+ ...-.|++-|+||..+- ..+-..| +..+.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGv-V~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGV-VRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccE-EEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 4699999999999999999876432 222222 222221 222 33346889999996432 2233333 44578
Q ss_pred EEEEEEECCChhH---HHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362 82 VFVLAFSLVSRAS---YENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (210)
Q Consensus 82 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
+++.|+|++..+. .++. ..+..++..+. .+.|.+||+||+|+..... ........+....+..
T Consensus 240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e----------~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE----------ELEELKKALAEALGWE 308 (369)
T ss_pred eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH----------HHHHHHHHHHHhcCCC
Confidence 9999999985542 3333 56666777665 4899999999999654432 2222333333333432
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 156 YYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
..+++||.++.|++++...+.+.+....
T Consensus 309 ~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 309 VFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred cceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 2233999999999999999988776653
No 244
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.59 E-value=2.3e-14 Score=120.84 Aligned_cols=118 Identities=13% Similarity=0.076 Sum_probs=79.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc--CCCCCC--------CCCc----------eeeeeeE-EEEECCEEEEEEEEeCC
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS--NKFPTD--------YIPT----------VFDNFSA-NVVAEGTTVNLGLWDTA 64 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~--~~~~~~--------~~~~----------~~~~~~~-~~~~~~~~~~~~i~D~~ 64 (210)
.+..+|+|+|.+++|||||.++|.. +..... ...+ .+.++.. ...+....+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3556999999999999999999973 211100 0000 0111111 12233345788999999
Q ss_pred CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
|+.+|.......++.+|++|+|+|+++.-... ...+...... .++|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~--t~~l~~~~~~--~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ--TRKLMEVCRL--RDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH--HHHHHHHHHh--cCCCEEEEEECCccccc
Confidence 99999876677889999999999998753222 2344444333 47999999999998653
No 245
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.59 E-value=1.4e-14 Score=109.47 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=77.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCCC-Cce-----------eeee---eEEEEE--------CCEEEEEEEEeCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK--FPTDYI-PTV-----------FDNF---SANVVA--------EGTTVNLGLWDTA 64 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~--~~~~~~-~~~-----------~~~~---~~~~~~--------~~~~~~~~i~D~~ 64 (210)
+|+++|..++|||||+.+|.... ...... .+. +.+. ...... +++.+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999998432 111000 000 0000 001112 2447899999999
Q ss_pred CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (210)
Q Consensus 65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 125 (210)
|+.+|.......++.+|++++|+|+++..+.+.. ..+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCcc
Confidence 9999998888899999999999999987655542 22223222 358999999999986
No 246
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.58 E-value=9.2e-15 Score=120.22 Aligned_cols=153 Identities=17% Similarity=0.111 Sum_probs=91.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC--CCCC-------------CCC-------------Cc---eeeeeeE-EEEECCEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN--KFPT-------------DYI-------------PT---VFDNFSA-NVVAEGTTV 56 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~--~~~~-------------~~~-------------~~---~~~~~~~-~~~~~~~~~ 56 (210)
+||+++|..++|||||+++|+.. .... ... +. .+.+... .........
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999732 1111 000 00 0000100 011222345
Q ss_pred EEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCC
Q 028362 57 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG 136 (210)
Q Consensus 57 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 136 (210)
.+.+||+||+++|.......+..+|++++|+|+.....-+. ......+.... ..++++++||+|+..... .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt--~~~~~~~~~~~-~~~iivviNK~D~~~~~~------~ 151 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT--RRHSYIASLLG-IRHVVLAVNKMDLVDYDE------E 151 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc--HHHHHHHHHcC-CCcEEEEEEecccccchH------H
Confidence 78899999999986655567889999999999976533221 12222222221 346889999999964321 0
Q ss_pred CCccCHHHHHHHHHHcCC--cEEEEeccCCCCCHHH
Q 028362 137 LVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKA 170 (210)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 170 (210)
......++...+....+. .+++++||++|.|+++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 000122333444444443 3789999999999986
No 247
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.58 E-value=8.8e-15 Score=122.23 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=93.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCC--CCC-------------CCC--C--------c------eeeeeeEE-EEEC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPT-------------DYI--P--------T------VFDNFSAN-VVAE 52 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~--~~~-------------~~~--~--------~------~~~~~~~~-~~~~ 52 (210)
.+..++|+++|..++|||||+++|+... ... ... + . .+.+.... ....
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4677999999999999999999998431 111 000 0 0 00111111 1122
Q ss_pred CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc
Q 028362 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 132 (210)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 132 (210)
.....+.+||+||++.|.......+..+|++++|+|+.....-.. ......+.... ..|+++++||+|+.....
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt--~~~~~l~~~lg-~~~iIvvvNKiD~~~~~~--- 177 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT--RRHSFIATLLG-IKHLVVAVNKMDLVDYSE--- 177 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc--hHHHHHHHHhC-CCceEEEEEeeccccchh---
Confidence 344678899999998886544445789999999999976532211 11111222211 247899999999964321
Q ss_pred CCCCCCccCHHHHHHHHHHcC---CcEEEEeccCCCCCHHHH
Q 028362 133 DHPGLVPVTTAQGEELRKQIG---ASYYIECSSKTQQNVKAV 171 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~ 171 (210)
.......++...+....+ ..+++++||++|.|++++
T Consensus 178 ---~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 178 ---EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ---HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 000011223333333333 357899999999999864
No 248
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.58 E-value=2.3e-14 Score=118.89 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=100.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcC--CCCC------------------------CCCCc---eeeeeeEE-EEECCE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT------------------------DYIPT---VFDNFSAN-VVAEGT 54 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~------------------------~~~~~---~~~~~~~~-~~~~~~ 54 (210)
.+.+++|+++|..++|||||+.+|+.. .... ...+. .+.+.... ......
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 567899999999999999999988741 1110 00000 01111111 123345
Q ss_pred EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHH------HHHHHHHHHHhccCCCC-cEEEEeeCcccccc
Q 028362 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE------NVLKKWIPELQHYSPGV-PVVLVGTKLDLRED 127 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~ 127 (210)
.+.++++|+||+++|.......+..+|++|+|+|+++. .++ ......+..+.. .++ ++++++||+|+...
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDATTP 160 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccCCch
Confidence 57889999999999988888889999999999999873 121 111222222222 356 46888999998621
Q ss_pred cccccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 028362 128 KHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA 170 (210)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 170 (210)
.. . ........+++..+..+.+. .+++++||.+|+|+.+
T Consensus 161 ~~---~-~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KY---S-KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hh---h-HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 10 0 00001235667777777662 4799999999999854
No 249
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=6e-14 Score=114.97 Aligned_cols=157 Identities=17% Similarity=0.227 Sum_probs=107.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEEC-CEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
.+..=|+++|.-..|||||+..+-..........-+...+ -+.+..+ +..-.++++|||||+.|..+...-..-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 3556789999999999999999987665443222222222 1122222 1234678899999999999999888999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc--------CCc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI--------GAS 155 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 155 (210)
++|++++|.-.-+.. +-++.+.. .+.|++++.||+|..+.+. +....-.+++ +..
T Consensus 83 ILVVa~dDGv~pQTi--EAI~hak~--a~vP~iVAiNKiDk~~~np-------------~~v~~el~~~gl~~E~~gg~v 145 (509)
T COG0532 83 ILVVAADDGVMPQTI--EAINHAKA--AGVPIVVAINKIDKPEANP-------------DKVKQELQEYGLVPEEWGGDV 145 (509)
T ss_pred EEEEEccCCcchhHH--HHHHHHHH--CCCCEEEEEecccCCCCCH-------------HHHHHHHHHcCCCHhhcCCce
Confidence 999999876433332 11122222 5899999999999985531 1111111222 235
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHH
Q 028362 156 YYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
.++++||++|+|+++++..+.-..
T Consensus 146 ~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 146 IFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHH
Confidence 789999999999999998876544
No 250
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=4.4e-14 Score=109.40 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=104.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--eeeeeEEEEECCEEEEEEEEeCCCccc--cc-------ccCcc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV--FDNFSANVVAEGTTVNLGLWDTAGQED--YN-------RLRPL 75 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~-------~~~~~ 75 (210)
....|+|.|.||||||||++.+...+..-...|.+ .....+ ++.....++++||||.=+ .. +-...
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGh---fe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGH---FERGYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEee---eecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 45789999999999999999999876443323322 222221 233446889999999411 11 11111
Q ss_pred cccCccEEEEEEECCChh--HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362 76 SYRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
.-+-+++++|++|.+... +++.. ..++..+..... .|+++|.||.|..... ..+++......-+
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~~~~~~~~~~~~~ 309 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEE------------KLEEIEASVLEEG 309 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchh------------HHHHHHHHHHhhc
Confidence 122367899999997654 45555 566666666554 8999999999997653 2333343344444
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
......+++..+.+++.+-..+.....+.
T Consensus 310 ~~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 310 GEEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred cccccceeeeehhhHHHHHHHHHHHhhch
Confidence 44456788889999998888887775554
No 251
>PLN03127 Elongation factor Tu; Provisional
Probab=99.57 E-value=7.2e-14 Score=115.82 Aligned_cols=165 Identities=20% Similarity=0.158 Sum_probs=98.6
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcC------CC-------C---CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSN------KF-------P---TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE 67 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~------~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 67 (210)
..+..++|+++|..++|||||+++|... .. + ++..+....+. ....+......+.++|+||+.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~-~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT-AHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee-eEEEEcCCCeEEEEEECCCcc
Confidence 4567899999999999999999999621 10 0 00001111111 112233344677889999998
Q ss_pred cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHH
Q 028362 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 146 (210)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 146 (210)
+|.......+..+|++++|+|+.+...-+. ...+..+.. .++| ++++.||+|+.+... ......++..
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~--~gip~iIvviNKiDlv~~~~-------~~~~i~~~i~ 204 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQ--VGVPSLVVFLNKVDVVDDEE-------LLELVEMELR 204 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEeeccCCHHH-------HHHHHHHHHH
Confidence 876544445667999999999976532221 333334433 3578 578899999964321 0001122333
Q ss_pred HHHHHcC----CcEEEEeccC---CCCC-------HHHHHHHHHHHHh
Q 028362 147 ELRKQIG----ASYYIECSSK---TQQN-------VKAVFDAAIKVVI 180 (210)
Q Consensus 147 ~~~~~~~----~~~~~~~Sa~---~~~~-------i~~~~~~i~~~~~ 180 (210)
++...++ ..|++++|+. ++.| +.++++.+.+.+.
T Consensus 205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 4444332 2478888876 4544 6777777776654
No 252
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.57 E-value=4.4e-14 Score=109.03 Aligned_cols=166 Identities=17% Similarity=0.243 Sum_probs=118.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE---EEEECCEEEEEEEEeCCCcccccccCcccccCc----c
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA---NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA----D 81 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~----~ 81 (210)
=+|+++|+.++||||||.+|.+..- ..+-.+..|.+ ....++....+.+|-+.|+-....+....+... .
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 4799999999999999999987652 22222333322 222344556788899999876666655554432 4
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHhccCC--------------------------------------------------
Q 028362 82 VFVLAFSLVSRASYENVLKKWIPELQHYSP-------------------------------------------------- 111 (210)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------------------------------------------------- 111 (210)
.+|++.|+++|+.+.+..+.|...+..+..
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 889999999997776666777654443310
Q ss_pred ------------CCcEEEEeeCccc----ccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 028362 112 ------------GVPVVLVGTKLDL----REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175 (210)
Q Consensus 112 ------------~~piilv~nK~D~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 175 (210)
.+|+++|.+|+|. ..+.++.+.|.+ .....+.+||.++|. ..|.+|+++..||+-++..|
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfd---fiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYi 285 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFD---FIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYI 285 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHH---HHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHH
Confidence 1589999999998 444333333332 567889999999998 77889999999999999999
Q ss_pred HHHHhC
Q 028362 176 IKVVIK 181 (210)
Q Consensus 176 ~~~~~~ 181 (210)
++..+-
T Consensus 286 vhr~yG 291 (473)
T KOG3905|consen 286 VHRSYG 291 (473)
T ss_pred HHHhcC
Confidence 998764
No 253
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.57 E-value=5e-14 Score=96.17 Aligned_cols=104 Identities=20% Similarity=0.256 Sum_probs=67.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc----------cccCcccc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----------NRLRPLSY 77 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~~~~ 77 (210)
||+|+|.+|+|||||+|+|.+... .....+++..........++..+ .++|+||...- ..... .+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~-~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLE-QI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHH-HH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHH-HH
Confidence 699999999999999999997532 12222222222223445566554 58999996432 11222 34
Q ss_pred cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeC
Q 028362 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121 (210)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 121 (210)
..+|++++|+|.+++.. .....+++.++ .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~--~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT--EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH--HHHHHHHHHHH---TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC--HHHHHHHHHHh---cCCCEEEEEcC
Confidence 78999999999877422 21244555553 57999999998
No 254
>PRK09866 hypothetical protein; Provisional
Probab=99.56 E-value=1e-13 Score=116.53 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=73.3
Q ss_pred EEEEEEeCCCcccc-----cccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccc
Q 028362 56 VNLGLWDTAGQEDY-----NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130 (210)
Q Consensus 56 ~~~~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~ 130 (210)
..+.++||||-..- .......+..+|+++||+|.....+..+ ..+...+.......|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~dree- 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQDRNS- 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCCccc-
Confidence 45678999996431 1123346889999999999987544433 234455544333469999999999854321
Q ss_pred ccCCCCCCccCHHHHHHHHHH------cCCcEEEEeccCCCCCHHHHHHHHHH
Q 028362 131 LADHPGLVPVTTAQGEELRKQ------IGASYYIECSSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~ 177 (210)
...+....+... .....++++||+.|.|++++++.+.+
T Consensus 307 ---------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 ---------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ---------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 123344444321 12346899999999999999988876
No 255
>PLN03126 Elongation factor Tu; Provisional
Probab=99.56 E-value=2.3e-14 Score=119.40 Aligned_cols=153 Identities=20% Similarity=0.155 Sum_probs=96.0
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCC------CCCCC--------CCceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNK------FPTDY--------IPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED 68 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~------~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~ 68 (210)
..+..++|+++|..++|||||+++|.... ....+ ....+.+... ...+......+.++|+||+++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 35678999999999999999999999521 10100 0001111111 111223345778999999999
Q ss_pred ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (210)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (210)
|.......+..+|++++|+|+.+...-+. ..++..+.. .++| +++++||+|+.+... ......+++..
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~-------~~~~i~~~i~~ 225 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQ--VGVPNMVVFLNKQDQVDDEE-------LLELVELEVRE 225 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCeEEEEEecccccCHHH-------HHHHHHHHHHH
Confidence 87666667788999999999986543322 344444433 2577 778999999965321 00022335555
Q ss_pred HHHHcC----CcEEEEeccCCCCC
Q 028362 148 LRKQIG----ASYYIECSSKTQQN 167 (210)
Q Consensus 148 ~~~~~~----~~~~~~~Sa~~~~~ 167 (210)
+....+ ..+++++|+.++.+
T Consensus 226 ~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 226 LLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHhcCCCcCcceEEEEEcccccc
Confidence 555542 34899999988743
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.56 E-value=1.8e-14 Score=124.71 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=94.2
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCC--CCCC----------CCCce-------------------eeeeeE-EEEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTD----------YIPTV-------------------FDNFSA-NVVA 51 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~--~~~~----------~~~~~-------------------~~~~~~-~~~~ 51 (210)
..+..++|+++|.+++|||||+++|+... .... ...++ +.+... ....
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 44577999999999999999999999532 2100 00000 000000 0112
Q ss_pred CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccc
Q 028362 52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 131 (210)
Q Consensus 52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~ 131 (210)
......+.++|+||+++|.......+..+|++++|+|+.....-+. ......+... ...|+++++||+|+.....
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t--~e~~~~~~~~-~~~~iivvvNK~D~~~~~~-- 174 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT--RRHSFIASLL-GIRHVVLAVNKMDLVDYDQ-- 174 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC--HHHHHHHHHh-CCCeEEEEEEecccccchh--
Confidence 2233567889999998876544556789999999999976532221 1112222222 2357889999999964211
Q ss_pred cCCCCCCccCHHHHHHHHHHcCC--cEEEEeccCCCCCHHH
Q 028362 132 ADHPGLVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKA 170 (210)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 170 (210)
........+...+...++. .+++++||++|.|+++
T Consensus 175 ----~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 ----EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 0000112333444445443 3689999999999974
No 257
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.56 E-value=3.9e-14 Score=110.27 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=75.0
Q ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCC-----------CCCC---ceeeee---eEEEEECCEEEEEEEEeCCCccccc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS--NKFPT-----------DYIP---TVFDNF---SANVVAEGTTVNLGLWDTAGQEDYN 70 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~--~~~~~-----------~~~~---~~~~~~---~~~~~~~~~~~~~~i~D~~G~~~~~ 70 (210)
+|+++|.+++|||||+++|.. +.... .+.+ ..+.+. ...+.. ..+.+.+|||||+.+|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence 589999999999999999973 21110 0000 001111 111222 34678889999999888
Q ss_pred ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
..+...++.+|++++|+|..+...-.. ..+...+.. .++|+++++||+|+...
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~--~~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADR--YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 888889999999999999987543222 233333333 36899999999999753
No 258
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=1.5e-14 Score=109.46 Aligned_cols=174 Identities=16% Similarity=0.134 Sum_probs=111.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCce-eeeeeEEEEECCEEEEEEEEeCCCccc-------ccccCcc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTV-FDNFSANVVAEGTTVNLGLWDTAGQED-------YNRLRPL 75 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~ 75 (210)
...+++|++.|..|+|||+|||+|+.+...+-. .+.. .........+++ -.+++||+||-++ +++....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 457799999999999999999999976543321 1111 111011122333 4678899999655 5666777
Q ss_pred cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccc---cccc--CCCCCCccCHHHH---HH
Q 028362 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLA--DHPGLVPVTTAQG---EE 147 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~---~~~~--~~~~~~~~~~~~~---~~ 147 (210)
++...|.++++.+..|+.--.+. ..|.+.+.. .-+.|++++.|..|....- +... +.+.+.......+ .+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~-~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIIL-GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHHh-ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 88899999999999988644332 444444443 2358999999999976542 1000 1111111222222 22
Q ss_pred HHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362 148 LRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 148 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
++++ ..|.+.++...+.|++++...++..+.....
T Consensus 192 ~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 192 LFQE--VKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred HHhh--cCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 2332 4577888889999999999999998865443
No 259
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.55 E-value=5.7e-14 Score=116.56 Aligned_cols=158 Identities=15% Similarity=0.089 Sum_probs=97.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHc--CCCCC------------------------CCCCc---eeeeeeE-EEEECCE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPT------------------------DYIPT---VFDNFSA-NVVAEGT 54 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~~------------------------~~~~~---~~~~~~~-~~~~~~~ 54 (210)
.+..++|+++|..++|||||+.+|+. +.... ...+. .+.+... .......
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 46789999999999999999999985 21110 00000 0111111 1123445
Q ss_pred EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhH---H--HHHHHHHHHHHhccCCCCc-EEEEeeCccccc--
Q 028362 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y--ENVLKKWIPELQHYSPGVP-VVLVGTKLDLRE-- 126 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~--~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~-- 126 (210)
...+.++|+||+.+|.......+..+|++++|+|++.... + .....+.+..+.. -++| ++++.||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDDKTVN 161 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEccccccch
Confidence 5788899999999998777777889999999999986521 0 0111222223322 2566 678999999532
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 028362 127 DKHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA 170 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 170 (210)
... .......+++..+....+. .+++++|+.+|+|+.+
T Consensus 162 ~~~------~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQ------ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhH------HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 110 0001233455555554443 5899999999999964
No 260
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.55 E-value=6.1e-14 Score=109.49 Aligned_cols=114 Identities=22% Similarity=0.231 Sum_probs=75.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCC-----Cce-----------eeeee-EEEEECCEEEEEEEEeCCCccccccc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYI-----PTV-----------FDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRL 72 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~-----~~~-----------~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~ 72 (210)
+|+++|.+|+|||||++++....-..... .+. ..... .........+.+.+||+||+.+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532110000 000 00000 00112223467889999999888777
Q ss_pred CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
+...+..+|++++|+|.++....... ..| ..+.. .++|.++++||+|....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~--~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADE--AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEECCccCCC
Confidence 78889999999999999876554332 223 23332 36899999999998754
No 261
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.53 E-value=8.7e-14 Score=115.29 Aligned_cols=168 Identities=14% Similarity=0.154 Sum_probs=103.6
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCC---CCCCCCC--ceeeeeeE----------------EEEE----------C
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIP--TVFDNFSA----------------NVVA----------E 52 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~----------------~~~~----------~ 52 (210)
+.+..++|.++|.-..|||||+.+|.+-. +.++... |...-|.. .... .
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 44678999999999999999999999532 1111100 00000000 0000 0
Q ss_pred C----EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCCh-hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 53 G----TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 53 ~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
. ....+.++|+||++.|-......+..+|++++|+|+..+ ...+. .+.+..+... .-.|+++++||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT--~ehl~i~~~l-gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT--SEHLAAVEIM-KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh--HHHHHHHHHc-CCCcEEEEEecccccCH
Confidence 0 023678999999999876666667889999999999864 22221 2222233222 23468899999999643
Q ss_pred cccccCCCCCCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 128 KHYLADHPGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.. .....+++..+.... ...+++++||++|.|++++++.|.+.+..+
T Consensus 187 ~~--------~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 187 AQ--------AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred HH--------HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 21 001123333333221 235899999999999999999998766443
No 262
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.52 E-value=3.9e-14 Score=107.01 Aligned_cols=174 Identities=18% Similarity=0.162 Sum_probs=103.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce------------eeeeeEEEEE---------------------
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV------------FDNFSANVVA--------------------- 51 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~------------~~~~~~~~~~--------------------- 51 (210)
.++..-|+++|..|+|||||++||..........|-. +.++..+.++
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 3467789999999999999999999654332221111 0000000000
Q ss_pred ----------------CCEEEEEEEEeCCCccc-ccc-----cCccccc--CccEEEEEEECC---ChhHHHHHHHHHHH
Q 028362 52 ----------------EGTTVNLGLWDTAGQED-YNR-----LRPLSYR--GADVFVLAFSLV---SRASYENVLKKWIP 104 (210)
Q Consensus 52 ----------------~~~~~~~~i~D~~G~~~-~~~-----~~~~~~~--~~~~~i~v~d~~---~~~s~~~~~~~~~~ 104 (210)
........++|||||.+ |.+ ++...+. ...++++|+|.. ++..|-...-.-..
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 11345678999999954 432 1111222 244777888874 34444432112223
Q ss_pred HHhccCCCCcEEEEeeCcccccccc-------------ccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHH
Q 028362 105 ELQHYSPGVPVVLVGTKLDLREDKH-------------YLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 169 (210)
Q Consensus 105 ~~~~~~~~~piilv~nK~D~~~~~~-------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 169 (210)
++.. ...|.|+++||+|+.+..- ... ....+..+.......+-..|.....+.+|+.+|.|.+
T Consensus 176 ilyk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 176 ILYK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 3332 5799999999999977632 111 1223333444444445555555567899999999999
Q ss_pred HHHHHHHHHHh
Q 028362 170 AVFDAAIKVVI 180 (210)
Q Consensus 170 ~~~~~i~~~~~ 180 (210)
++|..+-+.+-
T Consensus 254 df~~av~~~vd 264 (366)
T KOG1532|consen 254 DFFTAVDESVD 264 (366)
T ss_pred HHHHHHHHHHH
Confidence 99999877664
No 263
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.50 E-value=5.5e-13 Score=108.86 Aligned_cols=82 Identities=22% Similarity=0.205 Sum_probs=54.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ce-eeeeeEEE--------------------EEC-CEEEEEEEEeCCC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TV-FDNFSANV--------------------VAE-GTTVNLGLWDTAG 65 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~-~~-~~~~~~~~--------------------~~~-~~~~~~~i~D~~G 65 (210)
++|+|+|.|+||||||+|+|.+........| ++ ........ ..+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998765432222 11 11111100 011 2346789999999
Q ss_pred c----ccccccCccc---ccCccEEEEEEECC
Q 028362 66 Q----EDYNRLRPLS---YRGADVFVLAFSLV 90 (210)
Q Consensus 66 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 90 (210)
. .....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5 3334444445 88999999999996
No 264
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.50 E-value=5.6e-14 Score=93.80 Aligned_cols=137 Identities=23% Similarity=0.201 Sum_probs=98.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc----ccccCcccccCccEEEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPLSYRGADVFVL 85 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~~~~~~i~ 85 (210)
|++++|..|+|||||.+.+-++..- +..|....| +++ -.+|+||.-- +.+-......+++++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEF------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeec------cCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 7899999999999999999877532 222222222 111 1379998432 22222335678999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|-.++++++.... .+.... ..|+|-|.+|.|+... ...+....|..+-|..++|++|+.++
T Consensus 71 v~~and~~s~f~p------~f~~~~-~k~vIgvVTK~DLaed------------~dI~~~~~~L~eaGa~~IF~~s~~d~ 131 (148)
T COG4917 71 VHAANDPESRFPP------GFLDIG-VKKVIGVVTKADLAED------------ADISLVKRWLREAGAEPIFETSAVDN 131 (148)
T ss_pred eecccCccccCCc------cccccc-ccceEEEEecccccch------------HhHHHHHHHHHHcCCcceEEEeccCc
Confidence 9999999765443 222222 4568989999999864 35677788888899999999999999
Q ss_pred CCHHHHHHHHHH
Q 028362 166 QNVKAVFDAAIK 177 (210)
Q Consensus 166 ~~i~~~~~~i~~ 177 (210)
.|+++++..+..
T Consensus 132 ~gv~~l~~~L~~ 143 (148)
T COG4917 132 QGVEELVDYLAS 143 (148)
T ss_pred ccHHHHHHHHHh
Confidence 999999987754
No 265
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.4e-13 Score=100.35 Aligned_cols=165 Identities=16% Similarity=0.099 Sum_probs=103.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCccccc---CccEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR---GADVFVL 85 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~~~~i~ 85 (210)
-.|+++|+.++|||+|+.+|..+.+.....+..+. ...+.+.+.. .+++|.||+++.+.-...+++ .+-+++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN--EATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeeccc--eeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 57999999999999999999988654432222211 2223333333 788999999998765555555 7889999
Q ss_pred EEECC-ChhHHHHHHHHHHHHHhcc---CCCCcEEEEeeCccccccccc------c------------------cCCCCC
Q 028362 86 AFSLV-SRASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDKHY------L------------------ADHPGL 137 (210)
Q Consensus 86 v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~D~~~~~~~------~------------------~~~~~~ 137 (210)
|+|.. ......++.+.++..+... ...+|++|.-||.|+.-.... . +.....
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 99975 3445555556666666655 257899999999998655320 0 000000
Q ss_pred CccCHHHHH--HHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 138 VPVTTAQGE--ELRKQI-GASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 138 ~~~~~~~~~--~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
.......+. +|++-. ....|.+.|++++ +++++-+|+.+.
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 000011111 122211 1236788999988 899999998765
No 266
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.49 E-value=5.7e-13 Score=116.41 Aligned_cols=118 Identities=16% Similarity=0.072 Sum_probs=80.0
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcC--CCCC--CCCC--c----------eeeee---eEEEEECCEEEEEEEEeCC
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT--DYIP--T----------VFDNF---SANVVAEGTTVNLGLWDTA 64 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~--~~~~--~----------~~~~~---~~~~~~~~~~~~~~i~D~~ 64 (210)
...+..+|+|+|.+++|||||+++|... .... ...+ + .+.+. ...+..+ ++.+.+||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTP 83 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTP 83 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECC
Confidence 3345679999999999999999999732 1100 0000 0 01111 1122233 4678899999
Q ss_pred CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
|+.+|...+...++.+|++++|+|+++....+.. .++..+.. .++|+++++||+|+...
T Consensus 84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANR--YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 9998887788889999999999999876554432 33333333 36899999999999754
No 267
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.48 E-value=1.9e-12 Score=96.45 Aligned_cols=163 Identities=20% Similarity=0.196 Sum_probs=95.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC---CceeeeeeEEEEECCEEEEEEEEeCCCcccccc-----------cCc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI---PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-----------LRP 74 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 74 (210)
++|+|+|.+|||||||+|.+.+........ +.+...........+ ..+.++||||-.+... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 589999999999999999999875322211 111111122233344 4678899999654321 111
Q ss_pred ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (210)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (210)
....+++++++|+++.+ .+-.+ ...++.+.... .-.++++|+|+.|...... ... .........+.+.+.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~-~~~---~~~~~~~~l~~l~~~ 151 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGT-LED---YLENSCEALKRLLEK 151 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCc-HHH---HHHhccHHHHHHHHH
Confidence 23467899999999876 22221 23344444332 1358889999999765421 000 000012445555566
Q ss_pred cCCcEEEEec-----cCCCCCHHHHHHHHHHHHhC
Q 028362 152 IGASYYIECS-----SKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 152 ~~~~~~~~~S-----a~~~~~i~~~~~~i~~~~~~ 181 (210)
.+. .++..+ +..+.+++++++.+-+.+..
T Consensus 152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 554 333322 45677899999988888775
No 268
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.47 E-value=1.4e-12 Score=108.03 Aligned_cols=173 Identities=18% Similarity=0.232 Sum_probs=117.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEE---CCEEEEEEEEeCCCcccccccCcccccCc---
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA---EGTTVNLGLWDTAGQEDYNRLRPLSYRGA--- 80 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~--- 80 (210)
..=.|+|+|..++|||||+.+|.+.. .+.++.+..|.+-... .+....+.+|.+.|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34589999999999999999987543 3345666666442221 12335789999999877777766655532
Q ss_pred -cEEEEEEECCChhHHHHHHHHHHHHHhccCC------------------------------------------------
Q 028362 81 -DVFVLAFSLVSRASYENVLKKWIPELQHYSP------------------------------------------------ 111 (210)
Q Consensus 81 -~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~------------------------------------------------ 111 (210)
-++|+|.|++.|+.+.+....|+..++.+..
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 3889999999987665443444322221100
Q ss_pred ---------------CCcEEEEeeCcccccccccc-cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 028362 112 ---------------GVPVVLVGTKLDLREDKHYL-ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175 (210)
Q Consensus 112 ---------------~~piilv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 175 (210)
.+|++||.+|+|....-... .-+........+.+..+|..||+ ..+.||++...|++-++..|
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHH
Confidence 25999999999974321000 00111222567788999999998 67789999999999999999
Q ss_pred HHHHhCCc
Q 028362 176 IKVVIKPP 183 (210)
Q Consensus 176 ~~~~~~~~ 183 (210)
.+.+....
T Consensus 260 ~h~l~~~~ 267 (472)
T PF05783_consen 260 LHRLYGFP 267 (472)
T ss_pred HHHhccCC
Confidence 98887643
No 269
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.47 E-value=4.5e-13 Score=113.09 Aligned_cols=117 Identities=15% Similarity=0.086 Sum_probs=79.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc--CCCCC------CC--CCc----------eeeeeeE-EEEECCEEEEEEEEeCC
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS--NKFPT------DY--IPT----------VFDNFSA-NVVAEGTTVNLGLWDTA 64 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~--~~~~~------~~--~~~----------~~~~~~~-~~~~~~~~~~~~i~D~~ 64 (210)
.+..+|+|+|.+++|||||+++|+. +.... .. ..+ .+.++.. ...++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999863 22110 00 000 0112211 12344456888999999
Q ss_pred CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (210)
Q Consensus 65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 126 (210)
|+.+|.......++.+|++|+|+|.++.- ......+...... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv--~~~t~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV--ETRTRKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh--cCCCEEEEEECccccC
Confidence 99988776666789999999999998742 2222344444433 4689999999999864
No 270
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.46 E-value=2.3e-12 Score=102.06 Aligned_cols=129 Identities=18% Similarity=0.174 Sum_probs=84.3
Q ss_pred EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHH----------HHHHHHHHHHHhccC-CCCcEEEEeeCc
Q 028362 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY----------ENVLKKWIPELQHYS-PGVPVVLVGTKL 122 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~----------~~~~~~~~~~~~~~~-~~~piilv~nK~ 122 (210)
+...+.++|++||...+.-|.+++.+++++|||+++++.... .+...-+-.+++... .+.++||.+||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 337788999999999999999999999999999999865322 111111222333322 589999999999
Q ss_pred ccccccccccC-----CCCCCccCHHHHHHHHHH-----cC----CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 123 DLREDKHYLAD-----HPGLVPVTTAQGEELRKQ-----IG----ASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 123 D~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
|+..+.-..-+ +........+++..+.+. +. -.....+.|.+..+|+.+|..+.+.+...
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 98766331110 111111233344333332 11 12344589999999999999999988765
No 271
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=5.9e-13 Score=107.89 Aligned_cols=169 Identities=20% Similarity=0.171 Sum_probs=104.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc-ccC--------c
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN-RLR--------P 74 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~--------~ 74 (210)
+..++|+|+|.||||||||+|.|.+... -.....|+.+-....+.++| +.+.+.||+|-.+-. ... .
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 3558999999999999999999998653 23334455555555666677 566779999976521 111 1
Q ss_pred ccccCccEEEEEEEC--CChhHHHHHHHHHHHHHhccC-------CCCcEEEEeeCcccccccccccCCCCCCccCHHHH
Q 028362 75 LSYRGADVFVLAFSL--VSRASYENVLKKWIPELQHYS-------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 145 (210)
Q Consensus 75 ~~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~~~~~~-------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (210)
..+..+|++++|+|+ ++-++-..+ ...++...... ...|++++.||.|+...-. +....++.....
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~----~~~~~~~~~~~~ 418 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP----EMTKIPVVYPSA 418 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCccc----cccCCceecccc
Confidence 236679999999999 333333332 23333332221 2379999999999976511 000000111111
Q ss_pred HHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362 146 EELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 146 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
.. .-......++|+++++|++.+.+.+.+.+.....
T Consensus 419 --~~-~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 419 --EG-RSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred --cc-CcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 00 0112244569999999999999999887765443
No 272
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.7e-12 Score=106.42 Aligned_cols=153 Identities=18% Similarity=0.248 Sum_probs=106.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee---eeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF---DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
+++.-|.|+|.-..|||||+..|-..........-+. --|..+.. .| -.+++.||||+..|..|...-..-.|+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccE
Confidence 4667789999999999999999886544322111111 11233333 44 667889999999999999988999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhcc-CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH-------Hc-C
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-------QI-G 153 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~ 153 (210)
+++|+.+.|.-.-+.. + .+... ..+.|+|+..||+|.+... .+...+-.. .+ |
T Consensus 228 vVLVVAadDGVmpQT~--E---aIkhAk~A~VpiVvAinKiDkp~a~-------------pekv~~eL~~~gi~~E~~GG 289 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQTL--E---AIKHAKSANVPIVVAINKIDKPGAN-------------PEKVKRELLSQGIVVEDLGG 289 (683)
T ss_pred EEEEEEccCCccHhHH--H---HHHHHHhcCCCEEEEEeccCCCCCC-------------HHHHHHHHHHcCccHHHcCC
Confidence 9999999886433332 1 22222 2689999999999987653 222222111 12 3
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
..+.+++||++|+|++.+-+.+.-..
T Consensus 290 dVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 290 DVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred ceeEEEeecccCCChHHHHHHHHHHH
Confidence 46889999999999999988876543
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.45 E-value=2e-12 Score=115.49 Aligned_cols=154 Identities=20% Similarity=0.216 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECC-E----------E-----EEEEEEeCCCcccccccCcccccCcc
Q 028362 19 VGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEG-T----------T-----VNLGLWDTAGQEDYNRLRPLSYRGAD 81 (210)
Q Consensus 19 ~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~-~----------~-----~~~~i~D~~G~~~~~~~~~~~~~~~~ 81 (210)
++||||+.++-+-........-+...+.. .+..+. + . -.+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 35999999999765533222222111111 111110 0 0 12788999999999887777788899
Q ss_pred EEEEEEECCC---hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCcc------CHHHHH----H-
Q 028362 82 VFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV------TTAQGE----E- 147 (210)
Q Consensus 82 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~----~- 147 (210)
++++|+|+++ +.+++.+ ..+.. .++|+++|+||+|+..........+....+ ..++.. +
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I-----~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI-----NILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH-----HHHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999987 4444332 23332 368999999999996532210000000000 011110 0
Q ss_pred ---HH-------------HHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 148 ---LR-------------KQIGASYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 148 ---~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
+. ...+..+++++||++|+||++++.++....
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 11 112345899999999999999998876543
No 274
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.45 E-value=3.8e-12 Score=105.06 Aligned_cols=165 Identities=22% Similarity=0.308 Sum_probs=123.1
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
..+..+++.++|+.++|||.+++.+.++.+...+..+....+..+ +.+.++...+.+-|.+.. ...-+...- ..+|+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 445778999999999999999999999988876666665555443 445577777888888765 322222222 67999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
+.++||.+++.++... ....+..... ...|+++|++|.|+....+ . ...+. .+++.++++.+-+.+|.
T Consensus 499 ~~~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q-------~--~~iqp-de~~~~~~i~~P~~~S~ 566 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVPQ-------R--YSIQP-DEFCRQLGLPPPIHISS 566 (625)
T ss_pred EEEecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhhh-------c--cCCCh-HHHHHhcCCCCCeeecc
Confidence 9999999999999876 3443333332 6899999999999987653 1 11222 78899999887788888
Q ss_pred CCCCCHHHHHHHHHHHHhCCc
Q 028362 163 KTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~~ 183 (210)
+.... .++|..|+.++..+.
T Consensus 567 ~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 567 KTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCCCC-chHHHHHHHhhhCCC
Confidence 86444 899999999998876
No 275
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.45 E-value=5.2e-13 Score=104.22 Aligned_cols=158 Identities=17% Similarity=0.114 Sum_probs=106.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCC--CC----------CCCCce-------------------eeeeeEEEEE-
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKF--PT----------DYIPTV-------------------FDNFSANVVA- 51 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~--~~----------~~~~~~-------------------~~~~~~~~~~- 51 (210)
..+..+|++-+|.-.-||||||-||+...- .+ ....+. +.++..-+.+
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 456789999999999999999999995321 00 000111 1111111111
Q ss_pred CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccc
Q 028362 52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 131 (210)
Q Consensus 52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~ 131 (210)
.-...+|.+-||||+++|.+..-.-...||+.|+++|+ +..+.+. .+....+...-.-..+++..||+||.+..+..
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~Q-TrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQ-TRRHSFIASLLGIRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHH-hHHHHHHHHHhCCcEEEEEEeeecccccCHHH
Confidence 22335788999999999988777788889999999998 4555554 33344444433345788899999998876422
Q ss_pred cCCCCCCccCHHHHHHHHHHcCC--cEEEEeccCCCCCHHH
Q 028362 132 ADHPGLVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKA 170 (210)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 170 (210)
.. ....+-..|+.+++. ..++++||..|+|+-.
T Consensus 159 F~------~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 159 FE------AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HH------HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 21 355667788888875 3688999999998743
No 276
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=8.7e-13 Score=105.15 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=99.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHc--CCCCC---------------C---------CCCce---eeeeeEE-EEECC
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTS--NKFPT---------------D---------YIPTV---FDNFSAN-VVAEG 53 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~--~~~~~---------------~---------~~~~~---~~~~~~~-~~~~~ 53 (210)
+.+..++++++|+..+|||||+-+|+- +.++. . ...+. +.++... ..+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 457889999999999999999999983 22221 0 00000 1111111 12234
Q ss_pred EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhH-----HHHHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS-----YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-----~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 128 (210)
..+.|+++|+||+.+|-.....-+..||+.|+|+|+.+.+. ......+-+ .+...-.-..+|++.||+|+.+.+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCCceEEEEEEcccccccC
Confidence 55789999999999998777778889999999999987731 111111111 122111234678888999998743
Q ss_pred ccccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 028362 129 HYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA 170 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 170 (210)
+.. ......+...+.+..+. .+|+++|+..|+|+.+
T Consensus 162 e~r------f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EER------FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHH------HHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 200 11233344445544443 3699999999999865
No 277
>PRK12739 elongation factor G; Reviewed
Probab=99.43 E-value=4.6e-12 Score=110.75 Aligned_cols=116 Identities=17% Similarity=0.102 Sum_probs=78.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC--CCC------CC-----CCC---ceeeee---eEEEEECCEEEEEEEEeCCCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFP------TD-----YIP---TVFDNF---SANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~------~~-----~~~---~~~~~~---~~~~~~~~~~~~~~i~D~~G~ 66 (210)
.+..+|+|+|..++|||||+++|+.. ... .. +.+ ..+.+. ...+..+ +..+.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence 46678999999999999999999742 110 00 000 001111 1122233 467888999999
Q ss_pred ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
.+|...+...++.+|++++|+|+.+....+. ...+..+.. .++|+++++||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt--~~i~~~~~~--~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS--ETVWRQADK--YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 8887778888999999999999987644332 233333333 36899999999998753
No 278
>PRK13768 GTPase; Provisional
Probab=99.42 E-value=1e-12 Score=101.54 Aligned_cols=124 Identities=17% Similarity=0.115 Sum_probs=71.4
Q ss_pred EEEEEeCCCcccc---cccCcccccC-----ccEEEEEEECCChhHHHHH-HHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 57 NLGLWDTAGQEDY---NRLRPLSYRG-----ADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 57 ~~~i~D~~G~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
.+.+||+||+.+. +..+..+++. ++++++|+|........+. ...|+........++|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5788999998663 3343333332 7899999999654433222 12333322222247999999999999765
Q ss_pred ccccc--CCCCC--------------CccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 128 KHYLA--DHPGL--------------VPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 128 ~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
..... ..... .......+.+..+..+ ..+++++|+++++|++++.+++.+.+.
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 32000 00000 0000000111122333 237889999999999999999987764
No 279
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.41 E-value=4.9e-12 Score=86.96 Aligned_cols=113 Identities=27% Similarity=0.353 Sum_probs=79.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI-PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
+|++++|+.|+|||+|+.++....+...+. ++.+ +......+.+.++.+++||
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998777754433 3332 3333455677889999999
Q ss_pred ECCChhHHHHHHHHHHHHHhcc-CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (210)
+.+++.++..+ |...+... ..++|.++++||.|+..... +..+... .++++|++++.
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~~---------~~~~~s~~~~~ 112 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEGL---------EFAETSAKTPE 112 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHHH---------HHHHHhCCCcc
Confidence 99999998654 55555443 36789999999999844321 3333332 34567888888
Q ss_pred CHH
Q 028362 167 NVK 169 (210)
Q Consensus 167 ~i~ 169 (210)
|+.
T Consensus 113 ~~~ 115 (124)
T smart00010 113 EGE 115 (124)
T ss_pred hhh
Confidence 874
No 280
>PRK12740 elongation factor G; Reviewed
Probab=99.40 E-value=1.7e-12 Score=113.29 Aligned_cols=110 Identities=20% Similarity=0.213 Sum_probs=71.7
Q ss_pred ECCCCCCHHHHHHHHHcCC--CCC--C--CCCce----------eeeeeE-EEEECCEEEEEEEEeCCCcccccccCccc
Q 028362 14 VGDGAVGKTCMLICYTSNK--FPT--D--YIPTV----------FDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLS 76 (210)
Q Consensus 14 lG~~~~GKStli~~l~~~~--~~~--~--~~~~~----------~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 76 (210)
+|..++|||||+++|.... ... . ...+. +.+... .......++.+.+||+||+.+|...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 6999999999999996321 100 0 00010 011100 01112234788999999998887777788
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
+..+|++++|+|.+........ ..| ..+.. .++|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVW-RQAEK--YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHH-HHHHH--cCCCEEEEEECCCCCCC
Confidence 9999999999999887655432 223 33332 36899999999998643
No 281
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.39 E-value=2.2e-12 Score=99.20 Aligned_cols=96 Identities=24% Similarity=0.294 Sum_probs=76.5
Q ss_pred ccccccCcccccCccEEEEEEECCChh-HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHH
Q 028362 67 EDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 145 (210)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (210)
+++..+...+++++|.+++|+|++++. ++..+ ..|+..+.. .++|+++|+||+|+..... +..+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~----------~~~~~~ 90 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDED----------MEKEQL 90 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHH----------HHHHHH
Confidence 677888888999999999999999888 78776 788877654 5799999999999965432 333444
Q ss_pred HHHHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 028362 146 EELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 146 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 177 (210)
..+. ..+. +++++||+++.|++++|+.+..
T Consensus 91 ~~~~-~~g~-~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 91 DIYR-NIGY-QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHH-HCCC-eEEEEecCCchhHHHHHhhhcC
Confidence 4443 4665 7899999999999999988764
No 282
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.39 E-value=9.8e-14 Score=106.00 Aligned_cols=121 Identities=21% Similarity=0.165 Sum_probs=60.2
Q ss_pred EEEEEeCCCcccccccCcccc--------cCccEEEEEEECC---ChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362 57 NLGLWDTAGQEDYNRLRPLSY--------RGADVFVLAFSLV---SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (210)
Q Consensus 57 ~~~i~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 125 (210)
.+.++|||||.++...|.... ...-++++++|.. ++..+-.. .+........-+.|.|.|+||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHHHhhCCCCEEEeeeccCcc
Confidence 577899999988755554333 3455888899885 44444332 1222111122479999999999997
Q ss_pred cccc--cccC--CCCC--------CccCHHHHHHHHHHcCCc-EEEEeccCCCCCHHHHHHHHHHHH
Q 028362 126 EDKH--YLAD--HPGL--------VPVTTAQGEELRKQIGAS-YYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 126 ~~~~--~~~~--~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
.... ...- ..+. ..........+...++.. .++++|+.+++++++++..+-+.+
T Consensus 170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 6210 0000 0000 000111122222223455 789999999999999998887654
No 283
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.38 E-value=1.7e-11 Score=91.34 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=64.8
Q ss_pred EEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcE--EEEeeCcccccccccccC
Q 028362 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV--VLVGTKLDLREDKHYLAD 133 (210)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi--ilv~nK~D~~~~~~~~~~ 133 (210)
....++++.|..--....+. -++.+|.|+|+.+..+... .+. +++.. ++++||+|+.+...
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~---~~~-------~qi~~ad~~~~~k~d~~~~~~---- 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR---KGG-------PGITRSDLLVINKIDLAPMVG---- 154 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh---hhH-------hHhhhccEEEEEhhhcccccc----
Confidence 45667888884322222221 2678999999987665321 111 23334 78899999975311
Q ss_pred CCCCCccCHHHHHHHHHH-cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 134 HPGLVPVTTAQGEELRKQ-IGASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
...+...+..+. ....+++++||++|+|++++|+++.+.+.
T Consensus 155 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ------ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ------ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 223333444444 33458899999999999999999987553
No 284
>PRK00007 elongation factor G; Reviewed
Probab=99.36 E-value=1.9e-11 Score=106.94 Aligned_cols=117 Identities=15% Similarity=0.067 Sum_probs=77.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHc--CCCCCC----------------CCC-ceeeeeeEEEEECCEEEEEEEEeCCC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPTD----------------YIP-TVFDNFSANVVAEGTTVNLGLWDTAG 65 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~~~----------------~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G 65 (210)
..+..+|+|+|.+++|||||+++|.. +..... ... .+.......+... +..+.++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence 45677999999999999999999973 211100 000 0001111123333 46788899999
Q ss_pred cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
+.+|.......+..+|++++|+|.......+. ...+..+.. .++|+++++||+|+...
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt--~~~~~~~~~--~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS--ETVWRQADK--YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhh--HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 98876666667888999999999876644433 233333333 36899999999999754
No 285
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2e-11 Score=95.28 Aligned_cols=171 Identities=16% Similarity=0.188 Sum_probs=108.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc----CCCCCCCCCce-eee--eeE-EEE-------ECCEEEEEEEEeCCCccccc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS----NKFPTDYIPTV-FDN--FSA-NVV-------AEGTTVNLGLWDTAGQEDYN 70 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~----~~~~~~~~~~~-~~~--~~~-~~~-------~~~~~~~~~i~D~~G~~~~~ 70 (210)
+..+++.++|.-.+|||||.+++.. ..|+.+..++. +.+ ... .+. ..+....++++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 4569999999999999999999984 34554444433 111 111 111 24567889999999997654
Q ss_pred ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (210)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
+.......-.|..++|+|+.....-+.+.--++..+. ....++|.||+|..++.+ ......+...++..
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~q-------r~ski~k~~kk~~K 153 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQ-------RASKIEKSAKKVRK 153 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchh-------hhhHHHHHHHHHHH
Confidence 4444444556889999999866544443112222221 234577789998877643 01122233333333
Q ss_pred Hc------CCcEEEEeccCCC----CCHHHHHHHHHHHHhCCccchh
Q 028362 151 QI------GASYYIECSSKTQ----QNVKAVFDAAIKVVIKPPQKQK 187 (210)
Q Consensus 151 ~~------~~~~~~~~Sa~~~----~~i~~~~~~i~~~~~~~~~~~~ 187 (210)
-+ +..|++++||.+| ++|.++.+.+..++..+.+...
T Consensus 154 tLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~ 200 (522)
T KOG0461|consen 154 TLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEE 200 (522)
T ss_pred HHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCC
Confidence 22 4469999999999 7888888888888887765443
No 286
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.34 E-value=2.8e-12 Score=112.47 Aligned_cols=117 Identities=19% Similarity=0.064 Sum_probs=79.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC---------------CCCC---CCCceeeee-eEEEEECCEEEEEEEEeCCCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNK---------------FPTD---YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~---------------~~~~---~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~ 66 (210)
....+|+++|..++|||||+++|.... +.+. ...|..... ......++.++.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 456799999999999999999997421 1000 011221111 111234567789999999999
Q ss_pred ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (210)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 126 (210)
.+|.......++.+|++++|+|+.+....+.. ..|. .... .++|+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~-~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLR-QALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHH-HHHH--cCCCEEEEEEChhccc
Confidence 99887777889999999999999775333221 2222 2222 3578899999999864
No 287
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.31 E-value=6.1e-11 Score=92.87 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=69.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc---ccc---
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP---LSY--- 77 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~---~~~--- 77 (210)
...++|+++|.+||||||++|++.+.... ....++...........++ ..+.+|||||..+...... ..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 46789999999999999999999976532 1222221111112223344 6788999999765321111 111
Q ss_pred ---cCccEEEEEEECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccc
Q 028362 78 ---RGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRED 127 (210)
Q Consensus 78 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~ 127 (210)
...|+++||..++... +......++..+.... --.++++++|+.|..+.
T Consensus 114 l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 2588999996654221 1111122233333222 23578999999997643
No 288
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.30 E-value=5.4e-11 Score=91.51 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=71.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc--c-c-------
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN--R-L------- 72 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-~------- 72 (210)
....++|+|+|.+|||||||+|++.+..... ...+++..........++ ..+.+|||||-.... . .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 3466999999999999999999999865322 222222222222233344 567889999975441 0 0
Q ss_pred Cccccc--CccEEEEEEECCChhHHHHHHHHHHHHHhccC-C--CCcEEEEeeCccccccc
Q 028362 73 RPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYS-P--GVPVVLVGTKLDLREDK 128 (210)
Q Consensus 73 ~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~piilv~nK~D~~~~~ 128 (210)
...++. ..+++++|..++... +......+++.+.... . -.++++|.||+|.....
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 111222 467888887665432 1111123333333322 1 25799999999987554
No 289
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.29 E-value=1.5e-10 Score=95.10 Aligned_cols=124 Identities=16% Similarity=0.173 Sum_probs=82.8
Q ss_pred EEEEEEeCCCcccccccCcccccCccEEEEEEECCChh----------HHHHHHHHHHHHHhccC-CCCcEEEEeeCccc
Q 028362 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA----------SYENVLKKWIPELQHYS-PGVPVVLVGTKLDL 124 (210)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~ 124 (210)
..+.++|++||...+.-|..++.+++++|||+++++-. .+.+....|-..+.... .+.|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 56788999999999999999999999999999997532 34444444555555444 68999999999998
Q ss_pred ccccccccC------CCCCCc--cCHHHHHHHHHHc-----------CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 125 REDKHYLAD------HPGLVP--VTTAQGEELRKQI-----------GASYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 125 ~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
....-...+ ...... ...+.+..+.... ....+..|+|.+..++..+|+.+.+.+
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 655221111 000011 2344455444432 112445699999999999999887653
No 290
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=5.1e-12 Score=93.38 Aligned_cols=166 Identities=17% Similarity=0.227 Sum_probs=101.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc-----cccCcccccCcc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-----NRLRPLSYRGAD 81 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~~ 81 (210)
.-||+++|.+|+|||++--.+..+... +...+....++...-.---.+..+.+||++||+.+ .......+++++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 358999999999999988766644321 11122221222221111112367888999999854 346677899999
Q ss_pred EEEEEEECCChhHHHHH--HHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC---cE
Q 028362 82 VFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA---SY 156 (210)
Q Consensus 82 ~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 156 (210)
++++|||++..+-..+. .+..++.+-.+.|+..+....+|.|+..... .....+........+.. ..
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~--------r~~if~~r~~~l~~~s~~~~~~ 155 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA--------RELIFQRRKEDLRRLSRPLECK 155 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccch--------HHHHHHHHHHHHHHhccccccc
Confidence 99999999887643333 2455667777778889999999999976532 11222222222222211 24
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
++++|.-+ +++-++...++..+...
T Consensus 156 ~f~TsiwD-etl~KAWS~iv~~lipn 180 (295)
T KOG3886|consen 156 CFPTSIWD-ETLYKAWSSIVYNLIPN 180 (295)
T ss_pred ccccchhh-HHHHHHHHHHHHhhCCC
Confidence 56666654 44556666666555544
No 291
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.28 E-value=5.3e-11 Score=89.47 Aligned_cols=152 Identities=14% Similarity=0.036 Sum_probs=86.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC--C-----CCCC-cee-eee-----eEEEEEC-------------------
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--T-----DYIP-TVF-DNF-----SANVVAE------------------- 52 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~--~-----~~~~-~~~-~~~-----~~~~~~~------------------- 52 (210)
.....|+++|..|+|||||++++....-. . .... ... ..+ ......+
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 45678999999999999999999853110 0 0000 000 000 0000000
Q ss_pred CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc
Q 028362 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 132 (210)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 132 (210)
.....+.++|+.|.-.... .+....+..+.|+|+.+...... ..... ...|.++++||+|+.+...
T Consensus 100 ~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~---~~~~~-----~~~a~iiv~NK~Dl~~~~~--- 165 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL---KYPGM-----FKEADLIVINKADLAEAVG--- 165 (207)
T ss_pred cCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh---hhHhH-----HhhCCEEEEEHHHccccch---
Confidence 1134677888888211111 11123455677888876543211 11111 2357799999999965321
Q ss_pred CCCCCCccCHHHHHHHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 133 DHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
.......+..++. ...+++++||+++.|++++++++.+.
T Consensus 166 -------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 -------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 1223334334433 33589999999999999999999874
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.28 E-value=6.4e-11 Score=94.27 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=67.1
Q ss_pred EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC
Q 028362 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 133 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~ 133 (210)
..+.+.++||+|...-... ....+|.+++|.+......++.... ..++ ..-++|+||+|+.....
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~---- 211 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTA---- 211 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhH----
Confidence 3477899999997632222 4667999999976545555443311 1221 22379999999875421
Q ss_pred CCCCCccCHHHHHHHHHHc------CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 134 HPGLVPVTTAQGEELRKQI------GASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
. .....+........ ...|++.+||+++.|++++++.+.+.+..
T Consensus 212 ---a-~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 212 ---A-RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred ---H-HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 0 01112222222211 11478899999999999999999886653
No 293
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.24 E-value=6e-11 Score=96.61 Aligned_cols=163 Identities=13% Similarity=0.035 Sum_probs=104.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEeCCCcccc----cccC-----ccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDY----NRLR-----PLS 76 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~-----~~~ 76 (210)
..-+++|+|.|+||||+|+|.+......-.+.+.+. .-+... .+.+...++++||||.-+. +..+ ...
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 446889999999999999998887664433222221 111111 2334578899999994221 1111 112
Q ss_pred ccCccEEEEEEECCChh--HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHH--HHHHHHHHc
Q 028362 77 YRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA--QGEELRKQI 152 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 152 (210)
.+-..+++|+.|++... |.... -.+...+.-...+.|+|+|.||+|+-...+ +..+ ++.+....-
T Consensus 245 AHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed----------L~~~~~~ll~~~~~~ 313 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED----------LDQKNQELLQTIIDD 313 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc----------cCHHHHHHHHHHHhc
Confidence 22345889999998654 44443 344555555557899999999999876654 3333 223333333
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 153 GASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 153 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
+..+++.+|+.+.+|+-++-...++.++..
T Consensus 314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 314 GNVKVVQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred cCceEEEecccchhceeeHHHHHHHHHHHH
Confidence 445899999999999988888887776644
No 294
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.24 E-value=3.6e-10 Score=85.95 Aligned_cols=144 Identities=19% Similarity=0.130 Sum_probs=83.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.....|+++|.+|+|||||++.+....-........+. + .+ .......+.++|+||.. ..+. ...+.+|++++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVll 109 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLL 109 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEE
Confidence 45577999999999999999999864211111111111 1 11 12245667889999863 2222 24678999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccCCCCcE-EEEeeCcccccccccccCCCCCCccCHHHHHH-HHH-HcCCcEEEEecc
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-LRK-QIGASYYIECSS 162 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Sa 162 (210)
|+|.+....... ..++..+... +.|. ++|+||.|+...... .. .....+.. +.. .....+++.+||
T Consensus 110 viDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~------~~-~~~~~l~~~~~~~~~~~~ki~~iSa 178 (225)
T cd01882 110 LIDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNKT------LR-KTKKRLKHRFWTEVYQGAKLFYLSG 178 (225)
T ss_pred EEecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHHH------HH-HHHHHHHHHHHHhhCCCCcEEEEee
Confidence 999976543322 3344444432 4675 459999998643210 00 01122222 222 233458899999
Q ss_pred CCCCC
Q 028362 163 KTQQN 167 (210)
Q Consensus 163 ~~~~~ 167 (210)
++.-.
T Consensus 179 ~~~~~ 183 (225)
T cd01882 179 IVHGR 183 (225)
T ss_pred ccCCC
Confidence 98643
No 295
>PTZ00258 GTP-binding protein; Provisional
Probab=99.23 E-value=5.8e-10 Score=90.48 Aligned_cols=84 Identities=21% Similarity=0.196 Sum_probs=52.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee-eeeeEEEEECCE---------------EEEEEEEeCCCccccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEGT---------------TVNLGLWDTAGQEDYN 70 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~ 70 (210)
..++|.|+|.||||||||+|+|.+........|... ......+.+.+. ...+.++|+||...-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 457999999999999999999987654332223221 111112222221 2458899999964321
Q ss_pred ----ccCc---ccccCccEEEEEEECC
Q 028362 71 ----RLRP---LSYRGADVFVLAFSLV 90 (210)
Q Consensus 71 ----~~~~---~~~~~~~~~i~v~d~~ 90 (210)
.+.. ..++++|++++|+|..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1111 2367899999999973
No 296
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.22 E-value=9.5e-11 Score=88.37 Aligned_cols=166 Identities=19% Similarity=0.180 Sum_probs=88.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC---CceeeeeeEEEEECCEEEEEEEEeCCCcccccc-------cC----c
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI---PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-------LR----P 74 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~----~ 74 (210)
+||+|+|.+|+||||++|.+++........ +.+.........+++ ..+.++||||-.+-.. .+ .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 689999999999999999999876432221 111111122345666 4567899999432211 00 1
Q ss_pred ccccCccEEEEEEECCChhHHHH--HHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362 75 LSYRGADVFVLAFSLVSRASYEN--VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (210)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (210)
....+.+++++|+.+. +-+-.+ ..+.+...+.... -..++||+|..|...... ..+ .........+..+.+..
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~-~~~--~l~~~~~~~l~~li~~c 153 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDDS-LED--YLKKESNEALQELIEKC 153 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTT-HHH--HHHHHHHHHHHHHHHHT
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHH-HhHhhHHhhhcccccccc-HHH--HHhccCchhHhHHhhhc
Confidence 1245689999999997 222211 1122233333211 246888899888765532 000 00000112355666666
Q ss_pred CCcEEEEeccC------CCCCHHHHHHHHHHHHhCC
Q 028362 153 GASYYIECSSK------TQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 153 ~~~~~~~~Sa~------~~~~i~~~~~~i~~~~~~~ 182 (210)
+. .++..+.+ ....+.+++..+-+.+...
T Consensus 154 ~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 154 GG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp TT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 65 55555554 2345777777777766554
No 297
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.19 E-value=4.4e-11 Score=106.53 Aligned_cols=118 Identities=11% Similarity=0.087 Sum_probs=79.6
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCC--CCCCC---------CCc---eeeeee---EEEEE--------------C
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTDY---------IPT---VFDNFS---ANVVA--------------E 52 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~--~~~~~---------~~~---~~~~~~---~~~~~--------------~ 52 (210)
...+..+|+|+|..++|||||+++|+... ..... .+. .+.++. ..+.. +
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 34567799999999999999999998432 11100 000 000110 01111 2
Q ss_pred CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (210)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 125 (210)
+.++.+.++||||+.+|.......++.+|++|+|+|+...-..... ..|... .. .++|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~-~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA-LG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHH-HH--CCCCEEEEEECCccc
Confidence 2467889999999999988778888999999999999876544332 233333 22 368999999999987
No 298
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.19 E-value=2.1e-09 Score=80.82 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=101.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc-------ccCccccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN-------RLRPLSYR 78 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~ 78 (210)
-.-||+++|.|.||||||+-.+..-.-. ..|..|+-..+...+.+++ ..+++.|+||..+-. +......+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence 3469999999999999999888754321 2233333222222334445 556779999854321 23344678
Q ss_pred CccEEEEEEECCChhHHHHHHHHHHHHH----------------------------------------------------
Q 028362 79 GADVFVLAFSLVSRASYENVLKKWIPEL---------------------------------------------------- 106 (210)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------- 106 (210)
.||.++.|.|++..+.-..+.+.=++.+
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 8999999999987654332222211111
Q ss_pred --------------hccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHH
Q 028362 107 --------------QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172 (210)
Q Consensus 107 --------------~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 172 (210)
..+..-++++-|.||+|. ++.++...++++-+- +.+|+...-|++.++
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~---------------vs~eevdrlAr~Pns---vViSC~m~lnld~ll 280 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ---------------VSIEEVDRLARQPNS---VVISCNMKLNLDRLL 280 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccce---------------ecHHHHHHHhcCCCc---EEEEeccccCHHHHH
Confidence 111111366777888887 788899999887553 568888899999999
Q ss_pred HHHHHHHh
Q 028362 173 DAAIKVVI 180 (210)
Q Consensus 173 ~~i~~~~~ 180 (210)
+.+++.+.
T Consensus 281 e~iWe~l~ 288 (364)
T KOG1486|consen 281 ERIWEELN 288 (364)
T ss_pred HHHHHHhc
Confidence 99999774
No 299
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1e-10 Score=87.20 Aligned_cols=170 Identities=14% Similarity=0.226 Sum_probs=106.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEE---EECCEEEEEEEEeCCCcccc-cc--cCcccccCccE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV---VAEGTTVNLGLWDTAGQEDY-NR--LRPLSYRGADV 82 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~-~~--~~~~~~~~~~~ 82 (210)
.+|+++|...+|||++.+..... .+++ .|.....+.+. .+.+.-+.|.+||.|||-.+ .. -....++.+-+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhk-MsPn--eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeeec-cCCC--ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 56999999999999998655543 3322 12211111111 23346688999999999654 32 23345888999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhcc---CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
+|+|+|+.+ .+.++...+...+.+. .+++.+-+...|.|...+....+.+.+...-..+++.......=...|+.
T Consensus 105 LifvIDaQd--dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~L 182 (347)
T KOG3887|consen 105 LIFVIDAQD--DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYL 182 (347)
T ss_pred EEEEEechH--HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEE
Confidence 999999843 3445445665555543 37888889999999877654444433332223333333222211124555
Q ss_pred eccCCCCCHHHHHHHHHHHHhCCcc
Q 028362 160 CSSKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
+|..+ ..|-|+|..+++++.....
T Consensus 183 TSIyD-HSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 183 TSIYD-HSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred eeecc-hHHHHHHHHHHHHHhhhch
Confidence 66554 7899999999998876543
No 300
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.15 E-value=9.4e-11 Score=96.32 Aligned_cols=162 Identities=23% Similarity=0.363 Sum_probs=126.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
-.++|+.|+|..++|||+|+.+++.+.|... ..+.+..|...+.++++...+.+.|.+|... ..|...+|++||
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~-e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQD-ESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccc-cCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 4679999999999999999999999998766 4455666788899999999999999998533 336667999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
||.+.+..+++.+ ..+.-.+..+. ..+|+++++++.-..... ........+..++..+..+.++++++.
T Consensus 102 vf~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~--------~rv~~da~~r~l~~~~krcsy~et~at 172 (749)
T KOG0705|consen 102 VFSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKR--------PRVITDDRARQLSAQMKRCSYYETCAT 172 (749)
T ss_pred EEEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhccc--------ccccchHHHHHHHHhcCccceeecchh
Confidence 9999999999887 45544444332 578999998765433221 112455667777777777788999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028362 164 TQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~ 182 (210)
.|.+++..|+.+..++...
T Consensus 173 yGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 173 YGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 9999999999999887655
No 301
>PTZ00416 elongation factor 2; Provisional
Probab=99.14 E-value=2e-10 Score=102.27 Aligned_cols=117 Identities=12% Similarity=0.105 Sum_probs=78.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcC--CCCCCCCC-ce-----------eeeee---EEEEEC--------CEEEEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIP-TV-----------FDNFS---ANVVAE--------GTTVNLG 59 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~~~~-~~-----------~~~~~---~~~~~~--------~~~~~~~ 59 (210)
..+..+|+++|..++|||||+++|+.. ........ +. +.++. ..+... ++++.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 345679999999999999999999852 11110000 00 00000 011111 2367789
Q ss_pred EEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (210)
Q Consensus 60 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 125 (210)
++||||+.+|.......++.+|++|+|+|+.+.-.... +..+..+.. .++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t--~~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT--ETVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH--HHHHHHHHH--cCCCEEEEEEChhhh
Confidence 99999999987777778899999999999987644333 233333333 358999999999997
No 302
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.13 E-value=1.2e-09 Score=88.56 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=109.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC--CCCCCCCC------------ceeeee-eEEEEECCEEEEEEEEeCCCcccccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIP------------TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 71 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~--~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~ 71 (210)
..-+|+|+-.-..|||||+..|+.. .|.+...- ..+.++ .+...+..+++.+.++|||||-+|-.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 3457999999999999999999953 34332111 112222 22333455668899999999999999
Q ss_pred cCcccccCccEEEEEEECCChhHHHHHHHHHHH-HHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (210)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~-~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
..+..+.-+|++++++|+.....-+. ...+. .++ ...+.|+|.||+|.+..+. .++ .++...+.-
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~---~gL~PIVVvNKiDrp~Arp--------~~V-vd~vfDLf~ 149 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALA---LGLKPIVVINKIDRPDARP--------DEV-VDEVFDLFV 149 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCch--hhhHHHHHH---cCCCcEEEEeCCCCCCCCH--------HHH-HHHHHHHHH
Confidence 99999999999999999987664432 23222 222 3577788899999987753 112 233333333
Q ss_pred H-------cCCcEEEEeccCCC----------CCHHHHHHHHHHHHhCCc
Q 028362 151 Q-------IGASYYIECSSKTQ----------QNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 151 ~-------~~~~~~~~~Sa~~~----------~~i~~~~~~i~~~~~~~~ 183 (210)
. ++. |.++.|+.+| .++.-+|+.+++-+..+.
T Consensus 150 ~L~A~deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 150 ELGATDEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred HhCCChhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 3 344 7888888865 358888988888877654
No 303
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=3.1e-10 Score=96.18 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=106.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEE-E------------CCE----EEEEEEEeCCCcccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-A------------EGT----TVNLGLWDTAGQEDY 69 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~------------~~~----~~~~~i~D~~G~~~~ 69 (210)
+..=|||+|.-.+|||-|+..+-+..........+...+..++. . +.+ -=-+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 55678999999999999999988754433322222211111110 0 010 113567999999999
Q ss_pred cccCcccccCccEEEEEEECCCh---hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCC------CCCcc
Q 028362 70 NRLRPLSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP------GLVPV 140 (210)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~------~~~~~ 140 (210)
..+.......||.+|+|+|+-.. ++++.+ ..+.. .+.|+||.+||+|....+......+ .+...
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHH-----HHHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 99999899999999999999654 333332 23332 5799999999999876643111100 00000
Q ss_pred CH--------HHHHHHHHH-c------------CCcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 141 TT--------AQGEELRKQ-I------------GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 141 ~~--------~~~~~~~~~-~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
.. ..+.+|+++ + ....++++||.+|+||-+++.+|++......
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 00 112222222 1 1235678999999999999999988765443
No 304
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.11 E-value=4.4e-09 Score=84.50 Aligned_cols=81 Identities=22% Similarity=0.228 Sum_probs=51.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ce-eeeeeEEEEECCE---------------EEEEEEEeCCCccccc-
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TV-FDNFSANVVAEGT---------------TVNLGLWDTAGQEDYN- 70 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~- 70 (210)
++|.|+|.||||||||+|++.+........| ++ .... ....+.+. ...+.+.|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~-G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV-GVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceE-EEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 7899999999999999999998663322222 22 1111 11222221 1358899999964321
Q ss_pred ---ccCc---ccccCccEEEEEEECC
Q 028362 71 ---RLRP---LSYRGADVFVLAFSLV 90 (210)
Q Consensus 71 ---~~~~---~~~~~~~~~i~v~d~~ 90 (210)
.+.. ..++.+|++++|+|..
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1111 1367899999999984
No 305
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.09 E-value=7.4e-10 Score=80.35 Aligned_cols=151 Identities=13% Similarity=0.019 Sum_probs=88.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC----------------------CCCCceeeeeeEEE--E------------E
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPT----------------------DYIPTVFDNFSANV--V------------A 51 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~----------------------~~~~~~~~~~~~~~--~------------~ 51 (210)
.++|-+.|++|||||+|+.++....-.. ...+.........+ . .
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 4899999999999999999877432111 00011111100011 0 0
Q ss_pred CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccc
Q 028362 52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 131 (210)
Q Consensus 52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~ 131 (210)
......+.+++..| .---.. .+.-..+.-|+|+|++..+.... +-...+. ..=++|.||.|+.+.-.
T Consensus 93 ~~~~~Dll~iEs~G-NL~~~~--sp~L~d~~~v~VidvteGe~~P~---K~gP~i~-----~aDllVInK~DLa~~v~-- 159 (202)
T COG0378 93 DFPDLDLLFIESVG-NLVCPF--SPDLGDHLRVVVIDVTEGEDIPR---KGGPGIF-----KADLLVINKTDLAPYVG-- 159 (202)
T ss_pred cCCcCCEEEEecCc-ceeccc--CcchhhceEEEEEECCCCCCCcc---cCCCcee-----EeeEEEEehHHhHHHhC--
Confidence 01114566777777 111111 11112338889999987654321 1011111 12278899999988755
Q ss_pred cCCCCCCccCHHHHHHHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 132 ADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
.+.+...+-+++. +..+++.+|+++|+|+++++.|+....
T Consensus 160 --------~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 --------ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred --------ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 5556555555554 346899999999999999999987654
No 306
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.09 E-value=5.4e-10 Score=89.81 Aligned_cols=169 Identities=17% Similarity=0.129 Sum_probs=77.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCc--eeeeeeEEEEECCEEEEEEEEeCCCcccccc-----cCccccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPT--VFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-----LRPLSYR 78 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~ 78 (210)
..++|+|.|.+|+|||||||+|-+-...+.. .++ ...+...........-++++||+||...-.- +...-+.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~ 113 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY 113 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence 5689999999999999999999753222111 111 1111111111112222578899999533211 1112255
Q ss_pred CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccc-cccCCCCCCccCHHHHHHHHHH----cC
Q 028362 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH-YLADHPGLVPVTTAQGEELRKQ----IG 153 (210)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~ 153 (210)
.-|.+|++.+- + |....-.+...+.. .++|+.+|-+|.|..-... ...+.........+.+.+.+.+ .+
T Consensus 114 ~yD~fiii~s~--r--f~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~g 187 (376)
T PF05049_consen 114 RYDFFIIISSE--R--FTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAG 187 (376)
T ss_dssp G-SEEEEEESS--S----HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT
T ss_pred ccCEEEEEeCC--C--CchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcC
Confidence 67877777653 2 32222344455555 3789999999999632211 0001111001122333333222 22
Q ss_pred --CcEEEEeccCCC--CCHHHHHHHHHHHHhC
Q 028362 154 --ASYYIECSSKTQ--QNVKAVFDAAIKVVIK 181 (210)
Q Consensus 154 --~~~~~~~Sa~~~--~~i~~~~~~i~~~~~~ 181 (210)
.++.|.+|+.+- .+...+.+.+...+..
T Consensus 188 v~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 188 VSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp -SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred CCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 346778999874 4466677777665543
No 307
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.07 E-value=5.7e-10 Score=80.94 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=44.3
Q ss_pred EEEEEeCCCccc----ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCc
Q 028362 57 NLGLWDTAGQED----YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122 (210)
Q Consensus 57 ~~~i~D~~G~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 122 (210)
.+.++|+||-.. ...++..+++.+|++|+|.+.++..+-.+. ..+.+...... ..+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~~--~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPDK--SRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTTC--SSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCCC--CeEEEEEcCC
Confidence 367899999643 235567778999999999999886655544 56666655443 3488898984
No 308
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.05 E-value=1.1e-08 Score=80.24 Aligned_cols=116 Identities=17% Similarity=0.211 Sum_probs=66.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC----------CCcee-eeeeEEEEECCEEEEEEEEeCCCccccc------
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY----------IPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYN------ 70 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~------ 70 (210)
.++|+|+|.+|+|||||+|.|.+....... .++.. ......+.-++..+.++++||||-....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999976543221 11111 1112334457888999999999932110
Q ss_pred -------------------ccCcccc--cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 71 -------------------RLRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 71 -------------------~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
....... ..+|+++|+++.+... +..+.-..+..+ ...+++|-|..|.|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L---s~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL---SKRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH---TTTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh---cccccEEeEEecccccCH
Confidence 0000011 1367999999876532 222112333333 446788989999998543
No 309
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.04 E-value=9.1e-10 Score=97.01 Aligned_cols=117 Identities=17% Similarity=0.079 Sum_probs=76.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC--CCCCC---------CCCce---eeee-----eEEEEECCEEEEEEEEeCCCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD---------YIPTV---FDNF-----SANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~~~---------~~~~~---~~~~-----~~~~~~~~~~~~~~i~D~~G~ 66 (210)
.+.-+|+++|..++|||||+.+|... ..... +.+.. +.++ ......++..+.+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 45568999999999999999999842 11110 00000 0000 001112445688899999999
Q ss_pred ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (210)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 126 (210)
.+|.......++.+|++++|+|.......... ..|.... . .++|.+++.||+|...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~-~--~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQAL-R--ERVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHH-H--cCCCeEEEEECchhhc
Confidence 99987777788999999999999766433322 2333222 2 2468899999999864
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.03 E-value=5.6e-09 Score=82.83 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=63.1
Q ss_pred EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC
Q 028362 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 134 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~ 134 (210)
.+.+.++||+|...-. ......+|.++++.+.... +++ ..+...+ .++|.++|+||+|+.....
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el-~~~~~~l----~~~~~ivv~NK~Dl~~~~~----- 189 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDL-QGIKAGL----MEIADIYVVNKADGEGATN----- 189 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHH-HHHHHHH----hhhccEEEEEcccccchhH-----
Confidence 5788999999854211 1245667888877543323 332 2222222 2567899999999975421
Q ss_pred CCCCccCH--H----HHHHHHHHc-C-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 135 PGLVPVTT--A----QGEELRKQI-G-ASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 135 ~~~~~~~~--~----~~~~~~~~~-~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
... . ....+.... + ..+++.+||+++.|++++++++.+...
T Consensus 190 -----~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 190 -----VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred -----HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 000 0 001111111 1 125889999999999999999988644
No 311
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.03 E-value=6.6e-09 Score=80.86 Aligned_cols=80 Identities=18% Similarity=0.106 Sum_probs=49.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCCcee-eeeeEEEEECCE---------------EEEEEEEeCCCccccc----
Q 028362 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEGT---------------TVNLGLWDTAGQEDYN---- 70 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~---- 70 (210)
|.|+|.|+||||||+|++.+........|... ........+.+. ...+.++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998765332223221 111112222222 2358899999964321
Q ss_pred ccCcc---cccCccEEEEEEECC
Q 028362 71 RLRPL---SYRGADVFVLAFSLV 90 (210)
Q Consensus 71 ~~~~~---~~~~~~~~i~v~d~~ 90 (210)
.+... .++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11112 256799999999874
No 312
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1e-08 Score=85.15 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=99.5
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcC--CCCC---------------------------CCCCceeeeeeE-EEEECC
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT---------------------------DYIPTVFDNFSA-NVVAEG 53 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~---------------------------~~~~~~~~~~~~-~~~~~~ 53 (210)
..+..+.++++|...+|||||+.+++.. .... ......+.+... ...++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 4557799999999999999999988831 1110 000001112111 233456
Q ss_pred EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh---HHHH--HHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYEN--VLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~--~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 128 (210)
....+++.|.||+..|......-...+|++++|+|++..+ .|+. ...+....++.. .-..++++.||.|+.+-.
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWS 331 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCcc
Confidence 7788999999999999887777888899999999997542 1110 011222222222 245678889999997653
Q ss_pred ccccCCCCCCccCHHHHHHHH-HHcCC----cEEEEeccCCCCCHHHH
Q 028362 129 HYLADHPGLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQNVKAV 171 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~~~ 171 (210)
+ +.+......+..|. +..|. ..|+++|+.+|+|+...
T Consensus 332 q------~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 332 Q------DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred H------HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 3 11112333334444 22222 27899999999997543
No 313
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.99 E-value=6.3e-10 Score=84.64 Aligned_cols=166 Identities=16% Similarity=0.005 Sum_probs=94.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEeCCCc----------ccccccCcc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQ----------EDYNRLRPL 75 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~ 75 (210)
+..+++++|.+|||||+|+|-++..+....... ..+.+... -.-...-.+.+.|.||- .++..+...
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~i--n~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~ 212 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAI--NHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKS 212 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceee--eeeeccceEEEEecCCcccccCCccCcchHhHhHHH
Confidence 458999999999999999999987653322111 22222221 11223346778999991 122333444
Q ss_pred cccCcc---EEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccC-HHHHHHHHHH
Q 028362 76 SYRGAD---VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT-TAQGEELRKQ 151 (210)
Q Consensus 76 ~~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 151 (210)
|+.+.+ -+++.+|++.+-. ......++.+.+ .++|+.+|+||+|.........++++..... ....-..+..
T Consensus 213 Y~leR~nLv~~FLLvd~sv~i~--~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~ 288 (320)
T KOG2486|consen 213 YLLERENLVRVFLLVDASVPIQ--PTDNPEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFL 288 (320)
T ss_pred HHHhhhhhheeeeeeeccCCCC--CCChHHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceeehhhcccccee
Confidence 444433 3445556553321 111122233333 5799999999999877654333333222111 2222222222
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 152 IGASYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 152 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
.. .|++.+|+.++.|+++++-.|.+..
T Consensus 289 ~~-~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 289 VD-LPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred cc-CCceeeecccccCceeeeeehhhhh
Confidence 22 3777899999999999987776643
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.99 E-value=1.9e-09 Score=83.92 Aligned_cols=56 Identities=9% Similarity=-0.000 Sum_probs=39.6
Q ss_pred CcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH-cCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 113 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-IGASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 113 ~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
.+-++|+||+|+.+... ...+......+. ....+++++||++++|++++++|+..+
T Consensus 231 ~ADIVVLNKiDLl~~~~----------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLN----------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccH----------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999975321 223333333333 334588999999999999999999764
No 315
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.99 E-value=1.5e-09 Score=80.45 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=66.0
Q ss_pred ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH
Q 028362 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 148 (210)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (210)
++.++..+++++|++++|+|++++..- |...+.....+.|+++|+||+|+.... ...+....+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~ 86 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW 86 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence 567788889999999999999876421 111222222468999999999996532 233333333
Q ss_pred H-----HHcC--CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 149 R-----KQIG--ASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 149 ~-----~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
. ...+ ..+++.+||+++.|++++++++.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 2222 235789999999999999999988764
No 316
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.99 E-value=6.7e-10 Score=82.50 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=82.2
Q ss_pred CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh----------HHHHHHHHHHHHHhccC--CCCcEEEEe
Q 028362 52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA----------SYENVLKKWIPELQHYS--PGVPVVLVG 119 (210)
Q Consensus 52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~--~~~piilv~ 119 (210)
+-..+.|.+.|++||...+..|.+++.++..+++++.++... ..++. ..+...+-.+. .+.++|+.+
T Consensus 195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFL 273 (359)
T KOG0085|consen 195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFL 273 (359)
T ss_pred chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEe
Confidence 345678889999999999999999999999888887775432 22222 22333333332 689999999
Q ss_pred eCccccccccccc------CCCCCCccCHHHHHHHHHHc----C-----CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 120 TKLDLREDKHYLA------DHPGLVPVTTAQGEELRKQI----G-----ASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 120 nK~D~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
||.|+..+..... +..+--.-..+-+.+|..++ + +..-..+.|.+.+||.-+|..+...++..
T Consensus 274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 9999987643110 00000012233333333322 1 11233588999999999999988877654
No 317
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.97 E-value=3.3e-08 Score=80.00 Aligned_cols=154 Identities=16% Similarity=0.202 Sum_probs=92.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC----CCCC----------CCCC-------ceeeee----eEEEE-ECCEEEEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN----KFPT----------DYIP-------TVFDNF----SANVV-AEGTTVNLGLW 61 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~----~~~~----------~~~~-------~~~~~~----~~~~~-~~~~~~~~~i~ 61 (210)
.+-|.++|+.++|||||+|+|.+. .... -..+ |+..-| ...+. .++....+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 467899999999999999999976 2221 0111 111111 11111 24556778899
Q ss_pred eCCCcccc--------cc--c-------------------Cccccc-CccEEEEEE-ECC----ChhHHHHHHHHHHHHH
Q 028362 62 DTAGQEDY--------NR--L-------------------RPLSYR-GADVFVLAF-SLV----SRASYENVLKKWIPEL 106 (210)
Q Consensus 62 D~~G~~~~--------~~--~-------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~~ 106 (210)
||+|-..- .. + ....+. .+++.|+|. |-+ .++.+.++...+++.+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 99983211 11 0 111234 678888887 543 1245555556777777
Q ss_pred hccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC--CCCHHHHHHHHH
Q 028362 107 QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT--QQNVKAVFDAAI 176 (210)
Q Consensus 107 ~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~ 176 (210)
... ++|+++|+||.|-... ...+....+..+++. |++.+|+.+ .+.|..+++.+.
T Consensus 177 k~~--~kPfiivlN~~dp~~~------------et~~l~~~l~eky~v-pvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHPYHP------------ETEALRQELEEKYDV-PVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred Hhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHHHhCC-ceEEEEHHHcCHHHHHHHHHHHH
Confidence 764 7999999999994322 234445566777885 777777754 345555555544
No 318
>PRK00098 GTPase RsgA; Reviewed
Probab=98.95 E-value=1.5e-08 Score=80.26 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=65.5
Q ss_pred cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
.+.++|.+++|+|+.++.........|+..+.. .++|+++|+||+|+.... ..........+..+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~-----------~~~~~~~~~~~~~g~- 142 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDL-----------EEARELLALYRAIGY- 142 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCH-----------HHHHHHHHHHHHCCC-
Confidence 468999999999998887665555777766654 479999999999996322 122234444555665
Q ss_pred EEEEeccCCCCCHHHHHHHHH
Q 028362 156 YYIECSSKTQQNVKAVFDAAI 176 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~ 176 (210)
+++++||+++.|++++++.+.
T Consensus 143 ~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 143 DVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred eEEEEeCCCCccHHHHHhhcc
Confidence 788999999999999998775
No 319
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=7.9e-09 Score=80.29 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=103.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC---CCCCCCCCcee-------------------eeeeE--EEEEC----CEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTVF-------------------DNFSA--NVVAE----GTTVN 57 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~---~~~~~~~~~~~-------------------~~~~~--~~~~~----~~~~~ 57 (210)
+..++|.++|.-..|||||..+|++- .++++....+. ..|.. .+... .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 57899999999999999999999852 12211000000 01110 11111 12245
Q ss_pred EEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCC
Q 028362 58 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 137 (210)
Q Consensus 58 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 137 (210)
+.+.|.||++-.-...-.-..-.|++++|+.++.+.--... .+-+..++-. .-..+|++-||+|+.......
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT-~EHl~AleIi-gik~iiIvQNKIDlV~~E~Al------ 159 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-REHLMALEII-GIKNIIIVQNKIDLVSRERAL------ 159 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCch-HHHHHHHhhh-ccceEEEEecccceecHHHHH------
Confidence 67899999987544333334447899999999864311111 1111122211 245788999999996654200
Q ss_pred CccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCCccc
Q 028362 138 VPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 185 (210)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 185 (210)
...+++++|.+-- ...|++++||..+.||+-+++.+.+.+..+...
T Consensus 160 --E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 160 --ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred --HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 1344555555432 124899999999999999999999998776544
No 320
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.4e-08 Score=82.05 Aligned_cols=154 Identities=15% Similarity=0.096 Sum_probs=99.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeeeeEEEE-ECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 11 CVTVGDGAVGKTCMLICYTSNKFP---TDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
|...|.-..|||||++.+.+..-. +.... +.+....+. .+-.++.+.++|.||++++-+.....+...|.+++|
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKR--G~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKR--GITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhhhhc--CceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 567788889999999999975432 22111 222222222 223335889999999999876666667789999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH--cCCcEEEEeccCC
Q 028362 87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--IGASYYIECSSKT 164 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~ 164 (210)
++.++.-..+.. +.+..+... .....++|+||+|..+... ..+...+.... +...+++.+|+++
T Consensus 81 V~~deGl~~qtg--EhL~iLdll-gi~~giivltk~D~~d~~r-----------~e~~i~~Il~~l~l~~~~i~~~s~~~ 146 (447)
T COG3276 81 VAADEGLMAQTG--EHLLILDLL-GIKNGIIVLTKADRVDEAR-----------IEQKIKQILADLSLANAKIFKTSAKT 146 (447)
T ss_pred EeCccCcchhhH--HHHHHHHhc-CCCceEEEEeccccccHHH-----------HHHHHHHHHhhccccccccccccccc
Confidence 999644322221 222222221 2345689999999976531 12222222222 3344778999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 028362 165 QQNVKAVFDAAIKVVI 180 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~ 180 (210)
|.||+++.+.|.+...
T Consensus 147 g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 147 GRGIEELKNELIDLLE 162 (447)
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999999885
No 321
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=4.1e-09 Score=88.69 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=83.8
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC---------ce------eeeeeE---EE---EECCEEEEEEEEe
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP---------TV------FDNFSA---NV---VAEGTTVNLGLWD 62 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~---------~~------~~~~~~---~~---~~~~~~~~~~i~D 62 (210)
.+.+..+|.++|.-++|||+|+.-|.....+.-..+ +. +..+.. ++ ..+++.+.+++.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 345678999999999999999999986543221111 11 001100 01 1257889999999
Q ss_pred CCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (210)
Q Consensus 63 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 125 (210)
+||+-+|.......++-+|++++|+|+...-.+.. +.++...-. .+.|+++|+||.|..
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt--Er~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT--ERIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeH--HHHHHHHHh--ccCcEEEEEehhHHH
Confidence 99999999888888999999999999987776654 233322222 468999999999954
No 322
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.90 E-value=1.1e-08 Score=78.18 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=43.2
Q ss_pred EEEEEEeCCCcccc-------------cccCcccccC-ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeC
Q 028362 56 VNLGLWDTAGQEDY-------------NRLRPLSYRG-ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121 (210)
Q Consensus 56 ~~~~i~D~~G~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 121 (210)
..|+++|+||-... ..+...++++ .+++++|+|+...-.-... ..+...+.. ...|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~--~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP--QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH--cCCcEEEEEEC
Confidence 56889999997421 1244456664 4588899987543222221 233333322 46899999999
Q ss_pred cccccc
Q 028362 122 LDLRED 127 (210)
Q Consensus 122 ~D~~~~ 127 (210)
.|....
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 999764
No 323
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.5e-08 Score=87.88 Aligned_cols=118 Identities=20% Similarity=0.172 Sum_probs=83.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHc--CCCCC-CCCC----ce---------eeeee---EEEEECCEEEEEEEEeCCC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPT-DYIP----TV---------FDNFS---ANVVAEGTTVNLGLWDTAG 65 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~~-~~~~----~~---------~~~~~---~~~~~~~~~~~~~i~D~~G 65 (210)
..+.-+|.|+|+.++|||||..+++. +.... .... +. +.++. .++...+ ++.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 45778999999999999999999983 22211 0000 00 11111 1222333 58889999999
Q ss_pred cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
|-+|.......++-+|++++|+|+...-..+.- ..|.+... .++|.+++.||.|....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~---~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK---YGVPRILFVNKMDRLGA 143 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh---cCCCeEEEEECcccccc
Confidence 999999999999999999999999876555543 45555443 36899999999997654
No 324
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.85 E-value=2.5e-08 Score=84.86 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=70.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC-CCCCC-CCceeeeeeEEEEECCEEEEEEEEeCCCcccccc-------c---Cc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNK-FPTDY-IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-------L---RP 74 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~---~~ 74 (210)
..++|+|+|.+||||||++|.+++.. +.... .+.+..........++ ..+.++||||...... + ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 34799999999999999999999865 33221 1222111122223344 5678899999754321 0 11
Q ss_pred cccc--CccEEEEEEECCChhHHHHHHHHHHHHHhccC-C--CCcEEEEeeCcccccc
Q 028362 75 LSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYS-P--GVPVVLVGTKLDLRED 127 (210)
Q Consensus 75 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~piilv~nK~D~~~~ 127 (210)
.++. .+|++|+|..++......+. ..++..+.... . -..+|||+|..|..+.
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD-~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSND-LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHH-HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 1222 47899999887633322111 23444444333 1 2467899999998753
No 325
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.83 E-value=8.7e-09 Score=73.90 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=62.5
Q ss_pred ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (210)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
.++.+..+++|++++|+|+.++....+ ..+...+.. .+.|+++|+||+|+..... ......+..
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~------------~~~~~~~~~ 67 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE--LGKKLLIVLNKADLVPKEV------------LEKWKSIKE 67 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh--CCCcEEEEEEhHHhCCHHH------------HHHHHHHHH
Confidence 345566778999999999987653322 123233322 3689999999999853211 111222333
Q ss_pred HcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 151 QIGASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
..+. +++.+||+++.|++++++.+.+.+.
T Consensus 68 ~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 68 SEGI-PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred hCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence 3443 7889999999999999999988764
No 326
>PRK12289 GTPase RsgA; Reviewed
Probab=98.82 E-value=2.3e-08 Score=80.64 Aligned_cols=91 Identities=20% Similarity=0.220 Sum_probs=64.4
Q ss_pred cCcccccCccEEEEEEECCChh-HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362 72 LRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (210)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
+....+.++|.+++|+|+.++. ....+ ..|+..++. .++|++||+||+|+..... .+.......
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~------------~~~~~~~~~ 146 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTE------------QQQWQDRLQ 146 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHH------------HHHHHHHHH
Confidence 4445688999999999998776 33333 566665533 5799999999999954321 122223334
Q ss_pred HcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 151 QIGASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
..+. +++.+||+++.|++++++.+...
T Consensus 147 ~~g~-~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 147 QWGY-QPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred hcCC-eEEEEEcCCCCCHHHHhhhhccc
Confidence 5565 67899999999999999888643
No 327
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.82 E-value=2.5e-08 Score=78.57 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=65.6
Q ss_pred cccccCccEEEEEEECCChh-HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362 74 PLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (210)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (210)
...+.++|.+++|+|+.++. ++..+ +.|+..+.. .++|+++|+||+|+.+.. .......+....
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~--~~ip~iIVlNK~DL~~~~------------~~~~~~~~~~~~ 137 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEA--AGIEPVIVLTKADLLDDE------------EEELELVEALAL 137 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHH--cCCCEEEEEEHHHCCChH------------HHHHHHHHHHhC
Confidence 34588999999999999887 77665 677776654 468999999999996431 111223333445
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHH
Q 028362 153 GASYYIECSSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 153 ~~~~~~~~Sa~~~~~i~~~~~~i~~ 177 (210)
+. +++.+||+++.|+++++..+..
T Consensus 138 g~-~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 138 GY-PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred CC-eEEEEECCCCccHHHHHhhhcc
Confidence 55 8889999999999999987764
No 328
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.82 E-value=3e-09 Score=82.65 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=91.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE--EEECCEEEEEEEEeCCCccc---------ccccCcc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN--VVAEGTTVNLGLWDTAGQED---------YNRLRPL 75 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~G~~~---------~~~~~~~ 75 (210)
...-|.++|..|+|||||+++|......+...-....+-+.. -...+ -.+.+.||-|.-. |+....
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg--~~vlltDTvGFisdLP~~LvaAF~ATLe- 253 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG--NFVLLTDTVGFISDLPIQLVAAFQATLE- 253 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC--cEEEEeechhhhhhCcHHHHHHHHHHHH-
Confidence 445789999999999999999996554332211111111111 11123 3455689988432 222222
Q ss_pred cccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCc----EEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVP----VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p----iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
-...+|.++-|.|++.|.--... ...+..+.... +..| ++=|=||.|..+... . .+
T Consensus 254 eVaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----------e-------~E 314 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----------E-------EE 314 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----------c-------cc
Confidence 25679999999999998754443 45555555543 3333 455667888765432 0 12
Q ss_pred HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 151 QIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
+++ .+.+||.+|+|++++...+-.++..
T Consensus 315 ~n~---~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 315 KNL---DVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cCC---ccccccccCccHHHHHHHHHHHhhh
Confidence 222 4679999999999999887766543
No 329
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.81 E-value=1.8e-08 Score=76.17 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=77.2
Q ss_pred EEEEEEeCCCcccccccCcccccCccEEEEEEECCChh----------HHHHHHHHHHHHHhccC--CCCcEEEEeeCcc
Q 028362 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA----------SYENVLKKWIPELQHYS--PGVPVVLVGTKLD 123 (210)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~--~~~piilv~nK~D 123 (210)
++|+++|++||.+.+..|...+.++.++|||...++.. .+.+.. .+...+.++. ..+.+|+.+||.|
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL-~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEAL-NLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHH-HHHHHHHhhhHHhhhheeEEecHHH
Confidence 56899999999999999999999999999999876432 222221 2222222222 4688999999999
Q ss_pred ccccccc---------cc-------C---CCCCCc---c------CHHHHHHHHHHcC----CcEEEEeccCCCCCHHHH
Q 028362 124 LREDKHY---------LA-------D---HPGLVP---V------TTAQGEELRKQIG----ASYYIECSSKTQQNVKAV 171 (210)
Q Consensus 124 ~~~~~~~---------~~-------~---~~~~~~---~------~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~ 171 (210)
+..+... .+ + .++..+ + ..++........+ .+....+.|.+.++|..+
T Consensus 281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV 360 (379)
T KOG0099|consen 281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 360 (379)
T ss_pred HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence 7654220 00 0 000000 1 1111111111111 123345889999999999
Q ss_pred HHHHHHHHhCC
Q 028362 172 FDAAIKVVIKP 182 (210)
Q Consensus 172 ~~~i~~~~~~~ 182 (210)
|+.....+.+.
T Consensus 361 FnDcrdiIqr~ 371 (379)
T KOG0099|consen 361 FNDCRDIIQRM 371 (379)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 330
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.7e-07 Score=73.59 Aligned_cols=83 Identities=19% Similarity=0.127 Sum_probs=54.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc--eeeeeeEEEE-----------E----CCEEEEEEEEeCCCcc---
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT--VFDNFSANVV-----------A----EGTTVNLGLWDTAGQE--- 67 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~--~~~~~~~~~~-----------~----~~~~~~~~i~D~~G~~--- 67 (210)
.+++.|+|.||||||||.|++....-...+.|. +..+...... + .-....+.++|++|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 378999999999999999999976543222232 2222211110 1 1234668889999843
Q ss_pred -cccccCccc---ccCccEEEEEEECC
Q 028362 68 -DYNRLRPLS---YRGADVFVLAFSLV 90 (210)
Q Consensus 68 -~~~~~~~~~---~~~~~~~i~v~d~~ 90 (210)
.-+.+-..| ++.+|+++.|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 334444444 56799999999987
No 331
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.5e-08 Score=80.23 Aligned_cols=162 Identities=14% Similarity=0.194 Sum_probs=98.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CCce---eeeee--EEE-----------EEC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDY------------------IPTV---FDNFS--ANV-----------VAE 52 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~------------------~~~~---~~~~~--~~~-----------~~~ 52 (210)
-.+|++++|...+|||||+..|..+.++..+ .+.+ ...|. .++ ..+
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 3579999999999999999988866544311 0000 00000 000 012
Q ss_pred CEEEEEEEEeCCCcccccccCccccc--CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccc
Q 028362 53 GTTVNLGLWDTAGQEDYNRLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130 (210)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~ 130 (210)
.....++++|++|+..|.......+. ..+...+|+++...-.+.. ++-+.++... ++|+.++.+|+|+......
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhH
Confidence 23456789999999998765444433 3678888888876544432 3444454443 7999999999999876320
Q ss_pred c--------------cCCCCCCccCHHHHHHHHHH---cCCcEEEEeccCCCCCHHHHH
Q 028362 131 L--------------ADHPGLVPVTTAQGEELRKQ---IGASYYIECSSKTQQNVKAVF 172 (210)
Q Consensus 131 ~--------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~ 172 (210)
. -.+..+.--+.+++..-+++ -++.|++.+|+.+|+|++-+-
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 0 00111111233444444443 356789999999999987543
No 332
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.78 E-value=2.2e-09 Score=81.59 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=84.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-----------CCCCCCce-----e------------eeeeEEEEECC-----
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF-----------PTDYIPTV-----F------------DNFSANVVAEG----- 53 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~-----------~~~~~~~~-----~------------~~~~~~~~~~~----- 53 (210)
+.+.|.|-|+||+|||||+++|...-. ++. .|.. + .-|-......+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS-Sp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPS-SPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG-GGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCC-CCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 568999999999999999998884210 111 1110 0 00111111111
Q ss_pred -------------EEEEEEEEeCCC--cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEE
Q 028362 54 -------------TTVNLGLWDTAG--QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 118 (210)
Q Consensus 54 -------------~~~~~~i~D~~G--~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 118 (210)
-.+.+.+++|.| |.+.. ...-+|.+++|....-...++-+..-++++ +=++|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~v 173 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFV 173 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEE
Confidence 336677888887 43322 345589999999887666555442223322 22788
Q ss_pred eeCcccccccccccCCCCCCccCHHHHHHHHHHcC------CcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG------ASYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 119 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
.||.|...... ...+......... .+|.+.+||.++.||+++++.+.+..
T Consensus 174 VNKaD~~gA~~-----------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 174 VNKADRPGADR-----------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp EE--SHHHHHH-----------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EeCCChHHHHH-----------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 99999876653 3333333333221 25889999999999999999887633
No 333
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3.2e-08 Score=79.86 Aligned_cols=116 Identities=14% Similarity=0.089 Sum_probs=79.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCC--------CCCCc----------eeeeeeE-EEEECCEEEEEEEEeCCCcc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS--NKFPT--------DYIPT----------VFDNFSA-NVVAEGTTVNLGLWDTAGQE 67 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~--~~~~~--------~~~~~----------~~~~~~~-~~~~~~~~~~~~i~D~~G~~ 67 (210)
-..+|+-.|.+|||||-.+|+. +.... ....+ .+..++. -+..+..++.+.+.||||++
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 4678999999999999998882 22211 00111 1222222 23445667888999999999
Q ss_pred cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (210)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 128 (210)
+|.--.-..+..+|.++.|+|+...-.-+. .++.+.... .++||+=..||.|.....
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT--~KLfeVcrl--R~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQT--LKLFEVCRL--RDIPIFTFINKLDREGRD 149 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccHHH--HHHHHHHhh--cCCceEEEeeccccccCC
Confidence 997766667888999999999975533222 333333222 689999999999987763
No 334
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.77 E-value=1.7e-08 Score=81.98 Aligned_cols=96 Identities=25% Similarity=0.376 Sum_probs=68.7
Q ss_pred cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHH
Q 028362 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 145 (210)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (210)
+++|..+...+.+.++++++|+|+.+... .|...+.....+.|+++|+||+|+.+.. ...+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~ 112 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI 112 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence 46777888888889999999999976542 2333333333468999999999997543 233333
Q ss_pred H----HHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHH
Q 028362 146 E----ELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 146 ~----~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
. ++++..+.. .++.+||+++.|++++++.+.+.
T Consensus 113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 3 345556642 47889999999999999998654
No 335
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=7.8e-08 Score=74.03 Aligned_cols=166 Identities=19% Similarity=0.215 Sum_probs=101.2
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcC---C-------CCCC-CCCc---eeeeee---EEEEECCEEEEEEEEeCCCc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSN---K-------FPTD-YIPT---VFDNFS---ANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~---~-------~~~~-~~~~---~~~~~~---~~~~~~~~~~~~~i~D~~G~ 66 (210)
..+.+++|..+|.-+.|||||..++..- . +... ..|. .+.++. ..+...+..|.. .|+||+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyah--VDcPGH 85 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAH--VDCPGH 85 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEe--ccCCCh
Confidence 3567899999999999999999877631 1 1111 0111 122221 123334555554 999999
Q ss_pred ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHH
Q 028362 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQG 145 (210)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (210)
.+|-.....-....|+.|+|++++|...-+.- +.. ++.+. -..| +++++||+|+.++.. .......+.
T Consensus 86 aDYvKNMItgAaqmDgAILVVsA~dGpmPqTr-EHi--Llarq-vGvp~ivvflnK~Dmvdd~e-------llelVemEv 154 (394)
T COG0050 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTR-EHI--LLARQ-VGVPYIVVFLNKVDMVDDEE-------LLELVEMEV 154 (394)
T ss_pred HHHHHHHhhhHHhcCccEEEEEcCCCCCCcch-hhh--hhhhh-cCCcEEEEEEecccccCcHH-------HHHHHHHHH
Confidence 99876555567778999999999987544332 111 11111 2465 456779999987543 222345677
Q ss_pred HHHHHHcCC----cEEEEeccCCC-C-------CHHHHHHHHHHHHhCC
Q 028362 146 EELRKQIGA----SYYIECSSKTQ-Q-------NVKAVFDAAIKVVIKP 182 (210)
Q Consensus 146 ~~~~~~~~~----~~~~~~Sa~~~-~-------~i~~~~~~i~~~~~~~ 182 (210)
.++..+|+. .|++.-||..- + .|.++++.+-+.+..+
T Consensus 155 reLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 155 RELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred HHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 788888864 36666666531 2 2556666655555444
No 336
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.76 E-value=7.6e-08 Score=74.39 Aligned_cols=155 Identities=11% Similarity=0.008 Sum_probs=89.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-----------CCCCCCceeee----------------eeEEEEE--------
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF-----------PTDYIPTVFDN----------------FSANVVA-------- 51 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~-----------~~~~~~~~~~~----------------~~~~~~~-------- 51 (210)
+...|-|.|.||+|||||+.+|..... ++....|-+.- |-.....
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 446899999999999999998884321 11111111100 1001110
Q ss_pred ----------CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeC
Q 028362 52 ----------EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121 (210)
Q Consensus 52 ----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 121 (210)
+.-.+.+.|++|.|--+-.- ...+-+|.+++|.-..-...++-+..-++++ -=++|.||
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINK 198 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINK 198 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEec
Confidence 12457788899987433211 1344588888887776666666553333322 22788999
Q ss_pred cccccccccccCCCCCCccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 122 LDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 122 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
.|........ .....+..+. .....+|.+.+||..++|++++++.+.+-..
T Consensus 199 aD~~~A~~a~--------r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 199 ADRKGAEKAA--------RELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred cChhhHHHHH--------HHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 9976553200 0011111111 1112457889999999999999999876443
No 337
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.73 E-value=3.6e-08 Score=69.54 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=35.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC-CCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 66 (210)
+++++|.+|||||||+|++........ ..+.. ......+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGK-TKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCc-ccceEEEEeCC---CEEEEECCCc
Confidence 899999999999999999998764321 11111 11122233333 4688999995
No 338
>PRK12288 GTPase RsgA; Reviewed
Probab=98.71 E-value=8.4e-08 Score=77.33 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=65.3
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
..|+|.+++|+++....++..+ ..|+..+.. .++|++||+||+|+.+... ...........+..+. +
T Consensus 118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~ 184 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-R 184 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-e
Confidence 5679999999999877788776 788765543 4689999999999965321 0011222333345565 8
Q ss_pred EEEeccCCCCCHHHHHHHHHHH
Q 028362 157 YIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
++++||+++.|++++++.+...
T Consensus 185 v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 185 VLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred EEEEeCCCCcCHHHHHHHHhhC
Confidence 8999999999999999988653
No 339
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.68 E-value=9.2e-08 Score=68.69 Aligned_cols=90 Identities=16% Similarity=0.073 Sum_probs=58.8
Q ss_pred cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
.+.++|.+++|+|+.++..-.+ ..+...+.....+.|+++|+||+|+.+.. ........+.+.+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~-----------~~~~~~~~~~~~~~~- 70 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTW-----------VTARWVKILSKEYPT- 70 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHH-----------HHHHHHHHHhcCCcE-
Confidence 4678999999999988743211 23333443333468999999999995432 112233333332222
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHH
Q 028362 156 YYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
..+.+||+.+.|++++.+.+.+.+
T Consensus 71 ~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 71 IAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EEEEeeccccccHHHHHHHHHHHH
Confidence 246799999999999999987654
No 340
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.64 E-value=3.9e-07 Score=72.29 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=70.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCC----------CCCceeeeee-EEEEECCEEEEEEEEeCCCcccc---ccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD----------YIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDY---NRL 72 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~---~~~ 72 (210)
-.++|+++|++|.|||||+|.|.+...... ..|+...... ..+.-++..+.++++||||.-++ ...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 458999999999999999999997633222 2233333332 23444688899999999994322 111
Q ss_pred Ccc-----------------------ccc--CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 73 RPL-----------------------SYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 73 ~~~-----------------------~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
|.. .+. .+++++|.+-.+.. .+..+.-..+..+.. .+-+|-|..|.|..-.
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~---~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK---RVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc---ccCeeeeeeccccCCH
Confidence 110 111 26788888876533 333332233344443 3455656689997443
No 341
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1.1e-06 Score=70.09 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=69.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC--------C-CCceeeee-eEEEEECCEEEEEEEEeCCCccccc-------
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD--------Y-IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN------- 70 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~--------~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~------- 70 (210)
.+.++++|++|.|||||+|.|+...+..+ . ..+..... ...+.-++..+.|+++||||..+.-
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999887644332 1 11112211 2223346788999999999943221
Q ss_pred ------------------ccCccccc--CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 71 ------------------RLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 71 ------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
.+....+. .+++++|.+..+.. .+..+.-..+..+.. .+.+|-|..|.|....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~~---~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLSK---KVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHhc---cccccceeeccccCCH
Confidence 11112233 46788888876543 233332233334443 4556666689997543
No 342
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.57 E-value=2.3e-07 Score=67.58 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=36.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 66 (210)
..++++++|.||||||||+|++.+... .....|..... ...+..+ -.+.++|+||-
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~-~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS-MQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc-eEEEEeC---CCEEEEECcCC
Confidence 348999999999999999999998653 22222322211 1122222 24678999983
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.56 E-value=2.7e-07 Score=66.27 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~ 32 (210)
..++|+++|.+|||||||+|++.+..
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCC
Confidence 45789999999999999999999754
No 344
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.55 E-value=2.8e-07 Score=67.14 Aligned_cols=57 Identities=21% Similarity=0.130 Sum_probs=37.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~ 66 (210)
...++++++|.+|||||||+|++.+..+... .+..+.+.. ..+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3457999999999999999999998765321 111112221 123332 34678999994
No 345
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.55 E-value=8.1e-07 Score=67.37 Aligned_cols=151 Identities=16% Similarity=0.153 Sum_probs=91.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc------c-ccCcccccCc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY------N-RLRPLSYRGA 80 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------~-~~~~~~~~~~ 80 (210)
-||-++|-|.+||||++..+....-. +.+..++-....... ..+.-++++.|+||..+- + .......+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~--~y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVI--RYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceE--eccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 37899999999999999888754311 122222222111112 223467888999985432 1 2334467789
Q ss_pred cEEEEEEECCChhHHHHHHHHHH----------------------------------------H----------------
Q 028362 81 DVFVLAFSLVSRASYENVLKKWI----------------------------------------P---------------- 104 (210)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~----------------------------------------~---------------- 104 (210)
+.+++|.|+-.|-+-..+++.-+ .
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 99999999976532222211111 1
Q ss_pred ------HHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 105 ------ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 105 ------~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
.++..+.-+|.+.+.||+|... .++ +--.+.+...+++||-.+.|++++++.+.+.
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsIS---------------iEE---Ldii~~iphavpISA~~~wn~d~lL~~mwey 279 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSIS---------------IEE---LDIIYTIPHAVPISAHTGWNFDKLLEKMWEY 279 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceee---------------eec---cceeeeccceeecccccccchHHHHHHHhhc
Confidence 1111111257778888888633 222 2223445567899999999999999999885
Q ss_pred H
Q 028362 179 V 179 (210)
Q Consensus 179 ~ 179 (210)
+
T Consensus 280 L 280 (358)
T KOG1487|consen 280 L 280 (358)
T ss_pred c
Confidence 5
No 346
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.52 E-value=3.8e-07 Score=65.34 Aligned_cols=56 Identities=21% Similarity=0.168 Sum_probs=37.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG 65 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 65 (210)
...+++++|.+|+|||||+|++.+... ....++.+.+........+ ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT--SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC--CCEEEEECcC
Confidence 457899999999999999999996543 2223444433322222112 2578899998
No 347
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.48 E-value=2.1e-07 Score=74.18 Aligned_cols=164 Identities=20% Similarity=0.203 Sum_probs=95.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----------e--e--eeeeEE---------EE-----------
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----------V--F--DNFSAN---------VV----------- 50 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~----------~--~--~~~~~~---------~~----------- 50 (210)
.+.++.|...|.-+.|||||.-.|..+..++..-.+ . + .+.+.. +.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 456789999999999999999988876654321110 0 0 001111 00
Q ss_pred --ECCEEEEEEEEeCCCcccccc--cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362 51 --AEGTTVNLGLWDTAGQEDYNR--LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (210)
Q Consensus 51 --~~~~~~~~~i~D~~G~~~~~~--~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 126 (210)
++..+-.+.++|+.|++.|-+ +...+=+..|..++++.+++..+-.. ++-+.+... .+.|++++.||+|+.+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~a--~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIALA--MELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhhh--hcCCEEEEEEecccCc
Confidence 111334567899999998743 23333456899999999988765433 333333322 4799999999999987
Q ss_pred cccccc---C------CCCCCc--c-CHHHH--HHHHHH--cCCcEEEEeccCCCCCHHHHH
Q 028362 127 DKHYLA---D------HPGLVP--V-TTAQG--EELRKQ--IGASYYIECSSKTQQNVKAVF 172 (210)
Q Consensus 127 ~~~~~~---~------~~~~~~--~-~~~~~--~~~~~~--~~~~~~~~~Sa~~~~~i~~~~ 172 (210)
+..... + .-...+ + +.... ...+-+ .+..|+|.+|+.+|+|++-+.
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~ 331 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLD 331 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHH
Confidence 643000 0 000000 0 00000 111111 235799999999999987544
No 348
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.47 E-value=9.4e-07 Score=63.30 Aligned_cols=84 Identities=17% Similarity=0.071 Sum_probs=54.6
Q ss_pred cEEEEEEECCChhHHHHHHHHHH-HHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362 81 DVFVLAFSLVSRASYENVLKKWI-PELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (210)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
|++++|+|+.++.+.... .+. ..+. ..++|+++|+||+|+.+... .......+....+ ...+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~--~~~~p~IiVlNK~Dl~~~~~-----------~~~~~~~~~~~~~-~~ii~ 64 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIK--EKGKKLILVLNKADLVPKEV-----------LRKWLAYLRHSYP-TIPFK 64 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHh--cCCCCEEEEEechhcCCHHH-----------HHHHHHHHHhhCC-ceEEE
Confidence 678999999887654422 111 1222 24789999999999954321 1112222322333 46788
Q ss_pred eccCCCCCHHHHHHHHHHHHh
Q 028362 160 CSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
+||+++.|++++.+.+.+...
T Consensus 65 vSa~~~~gi~~L~~~i~~~~~ 85 (155)
T cd01849 65 ISATNGQGIEKKESAFTKQTN 85 (155)
T ss_pred EeccCCcChhhHHHHHHHHhH
Confidence 999999999999998877643
No 349
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.47 E-value=8.6e-07 Score=70.62 Aligned_cols=118 Identities=21% Similarity=0.234 Sum_probs=64.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC------------------CCCCceeeeee-E----EE--------------
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT------------------DYIPTVFDNFS-A----NV-------------- 49 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~~~-~----~~-------------- 49 (210)
-++||+++|.-.+|||||+..|..+.++. ...+..+.++- . .+
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 35799999999999999998777554432 11111111110 0 00
Q ss_pred -EECCEEEEEEEEeCCCcccccccCccc--ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362 50 -VAEGTTVNLGLWDTAGQEDYNRLRPLS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (210)
Q Consensus 50 -~~~~~~~~~~i~D~~G~~~~~~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 126 (210)
..++..--++++|++|++.|-...-.- =+-.|...+++-.+-. +.-...+-+..... -.+|+.+|.+|+|..+
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALa--L~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALA--LHVPVFVVVTKIDMCP 287 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhh--hcCcEEEEEEeeccCc
Confidence 012233456889999999985432211 1235555555544321 11111111111111 2589999999999887
Q ss_pred cc
Q 028362 127 DK 128 (210)
Q Consensus 127 ~~ 128 (210)
.+
T Consensus 288 AN 289 (641)
T KOG0463|consen 288 AN 289 (641)
T ss_pred HH
Confidence 74
No 350
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.46 E-value=7.4e-07 Score=69.96 Aligned_cols=57 Identities=26% Similarity=0.325 Sum_probs=37.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 66 (210)
...++++++|.+|||||||+|++.+.... ....|..... ...+.... .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~-~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG-QQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc-eEEEEeCC---CEEEEECCCc
Confidence 35689999999999999999999976532 2222222111 11222322 3678999997
No 351
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.42 E-value=7.1e-07 Score=62.90 Aligned_cols=77 Identities=14% Similarity=0.108 Sum_probs=50.8
Q ss_pred cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
.+..+|++++|+|+.++.+..+ ..+...+.....++|+++|+||+|+.+.. ......+..+..+.
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~~~~~~~~~~~~~~- 72 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEE------------QRKAWAEYFKKEGI- 72 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHH------------HHHHHHHHHHhcCC-
Confidence 5678999999999988765442 12333333222578999999999995432 12234444455554
Q ss_pred EEEEeccCCCCC
Q 028362 156 YYIECSSKTQQN 167 (210)
Q Consensus 156 ~~~~~Sa~~~~~ 167 (210)
.++.+||.++.+
T Consensus 73 ~ii~iSa~~~~~ 84 (141)
T cd01857 73 VVVFFSALKENA 84 (141)
T ss_pred eEEEEEecCCCc
Confidence 788999998764
No 352
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.42 E-value=1.5e-06 Score=63.32 Aligned_cols=88 Identities=20% Similarity=0.138 Sum_probs=58.6
Q ss_pred cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (210)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
...+.++|.+++|+|+.++....+. .+...+ .+.|+++|+||+|+.+.. ......++.+..+
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~------------~~~~~~~~~~~~~ 75 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPK------------KTKKWLKYFESKG 75 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChH------------HHHHHHHHHHhcC
Confidence 4467889999999999876543221 222222 357999999999995331 1111212222223
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
..++.+||+++.|++++.+.+...+.
T Consensus 76 -~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 76 -EKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred -CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 36788999999999999999988763
No 353
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.41 E-value=1.4e-06 Score=68.81 Aligned_cols=56 Identities=27% Similarity=0.314 Sum_probs=37.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 66 (210)
..++++++|.+|||||||+|++.+... .....|...... ..+..+. .+.++||||-
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~-~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ-QWIKLGK---GLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE-EEEEeCC---cEEEEECCCc
Confidence 568999999999999999999998653 222233222211 1222232 3678999997
No 354
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=6.7e-06 Score=70.02 Aligned_cols=119 Identities=17% Similarity=0.210 Sum_probs=71.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeee---------------------------------------
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNF--------------------------------------- 45 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~--------------------------------------- 45 (210)
....||++.|..++||||++|+++..+.- +...|++....
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 45689999999999999999999965432 21112111000
Q ss_pred ----eEEEEECCEEE-----EEEEEeCCCcc---cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCC
Q 028362 46 ----SANVVAEGTTV-----NLGLWDTAGQE---DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV 113 (210)
Q Consensus 46 ----~~~~~~~~~~~-----~~~i~D~~G~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 113 (210)
-..+..++... .+.++|.||-+ ...+-...+..++|++|+|..+.+.-...+ ..++...... ..
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CC
Confidence 00111111111 35678999953 445556677889999999998866655444 3333333332 23
Q ss_pred cEEEEeeCccccccc
Q 028362 114 PVVLVGTKLDLREDK 128 (210)
Q Consensus 114 piilv~nK~D~~~~~ 128 (210)
.|.|+.||.|.....
T Consensus 263 niFIlnnkwDasase 277 (749)
T KOG0448|consen 263 NIFILNNKWDASASE 277 (749)
T ss_pred cEEEEechhhhhccc
Confidence 355667898986653
No 355
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.35 E-value=1e-06 Score=65.28 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~ 32 (210)
.+++++|.+|||||||+|.|.+..
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999754
No 356
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.34 E-value=5.4e-07 Score=64.41 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
.++++|++|||||||+|.|....
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 67999999999999999999763
No 357
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.31 E-value=3.1e-05 Score=54.87 Aligned_cols=147 Identities=18% Similarity=0.238 Sum_probs=82.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCC-Cccccc--------------
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTA-GQEDYN-------------- 70 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~~~~-------------- 70 (210)
+..+||.+-|+|||||||++.++....-... -+.+-.+..++..+++..-|.+.|+. |.+..-
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 4568999999999999999998885332111 22333455567778888888889888 322110
Q ss_pred ----cc-------CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCC
Q 028362 71 ----RL-------RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLV 138 (210)
Q Consensus 71 ----~~-------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~ 138 (210)
.+ ....++.|| ++++|=-.+-.+. ...+.+.++..- ++.|++.++.+.+..+-
T Consensus 81 V~v~~le~i~~~al~rA~~~aD--vIIIDEIGpMElk--s~~f~~~ve~vl~~~kpliatlHrrsr~P~----------- 145 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEAD--VIIIDEIGPMELK--SKKFREAVEEVLKSGKPLIATLHRRSRHPL----------- 145 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCC--EEEEecccchhhc--cHHHHHHHHHHhcCCCcEEEEEecccCChH-----------
Confidence 00 011123344 3444544443332 244555554433 57887777766654221
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
. ++ ....+. .++. .+..|-+.+++.+...+.
T Consensus 146 ---v---~~-ik~~~~-v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 146 ---V---QR-IKKLGG-VYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred ---H---HH-hhhcCC-EEEE---EccchhhHHHHHHHHHhc
Confidence 1 12 223332 2222 466677788888877664
No 358
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=6e-06 Score=69.13 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=74.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
+.++=|+++|+||+||||||+.|+..--. .|+.........+.++...+++.++| .+..+++. ..+-||.+++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk----~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVlL 139 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTK----QTIDEIRGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADLVLL 139 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHH----hhhhccCCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhheeEE
Confidence 45677889999999999999988864311 11111111223457888899999999 33444443 4566899999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCccccccc
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDK 128 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~ 128 (210)
++|.+-.-..+. ..++.++..+. .| ++-|++..|+....
T Consensus 140 lIdgnfGfEMET--mEFLnil~~HG--mPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 140 LIDGNFGFEMET--MEFLNILISHG--MPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred EeccccCceehH--HHHHHHHhhcC--CCceEEEEeecccccCh
Confidence 999865544333 46666776653 45 55788999997764
No 359
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.30 E-value=1.9e-06 Score=68.95 Aligned_cols=56 Identities=25% Similarity=0.240 Sum_probs=37.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~ 66 (210)
.+.+++.++|.||||||||||+|.+... .....| +.+-.. .+.... .+.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCC---CeEEecCCCc
Confidence 3458899999999999999999998764 222233 222221 223332 2678999995
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.29 E-value=3e-06 Score=60.69 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=36.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 66 (210)
....+++++|.+|||||||+|.+.+... .....+....... ....+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~-~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ-EVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE-EEEec---CCEEEEECCCC
Confidence 3568899999999999999999997652 2222222211111 12222 24778999983
No 361
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.28 E-value=4.5e-06 Score=65.51 Aligned_cols=90 Identities=21% Similarity=0.130 Sum_probs=60.1
Q ss_pred CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (210)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (210)
....+..+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+.. . .....+..+..
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~-----------~-~~~~~~~~~~~ 76 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPA-----------V-TKQWLKYFEEK 76 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHH-----------H-HHHHHHHHHHc
Confidence 34467889999999999876543321 222233 357999999999995331 1 11222222333
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 153 GASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 153 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
+. +++.+||+++.|++++.+.+.+.+..
T Consensus 77 ~~-~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 77 GI-KALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 43 67889999999999999988877644
No 362
>PRK13796 GTPase YqeH; Provisional
Probab=98.28 E-value=5e-06 Score=67.79 Aligned_cols=93 Identities=24% Similarity=0.372 Sum_probs=60.0
Q ss_pred cccccCcccccCcc-EEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHH--
Q 028362 68 DYNRLRPLSYRGAD-VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-- 144 (210)
Q Consensus 68 ~~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 144 (210)
.|...... +..++ .+++|+|+.|.. ..|...+.....+.|+++|+||+|+.+.. ...+.
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~ 119 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVK 119 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHH
Confidence 34443332 33444 889999997743 22333444333478999999999996532 22223
Q ss_pred --HHHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHH
Q 028362 145 --GEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 145 --~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
...+++..+.. .++.+||+++.|++++++.+.+.
T Consensus 120 ~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 120 NWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 33345555542 57889999999999999998664
No 363
>PRK12288 GTPase RsgA; Reviewed
Probab=98.24 E-value=1.6e-06 Score=70.04 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCC
Q 028362 11 CVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~ 32 (210)
++|+|.+|||||||+|+|....
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 6899999999999999999754
No 364
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.24 E-value=6.1e-06 Score=66.67 Aligned_cols=81 Identities=19% Similarity=0.087 Sum_probs=52.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCce--eeeeeEEEEECC---------------EEEEEEEEeCCCccccc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTV--FDNFSANVVAEG---------------TTVNLGLWDTAGQEDYN 70 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~--~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~~~ 70 (210)
+++.|+|.|++|||||++.+.+... ...+.|.. ..... .+.+.+ ....+.+.|+||...-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g-~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAG-VVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCcee-EEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 7899999999999999999998765 33222222 22211 222222 22467889999964421
Q ss_pred ----ccCc---ccccCccEEEEEEECC
Q 028362 71 ----RLRP---LSYRGADVFVLAFSLV 90 (210)
Q Consensus 71 ----~~~~---~~~~~~~~~i~v~d~~ 90 (210)
.+-. ..++++|+++.|++..
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2222 2477899999999985
No 365
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.23 E-value=6.3e-06 Score=61.95 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=40.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--------CCCC-ceeee-eeEEEEECCEEEEEEEEeCCCc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT--------DYIP-TVFDN-FSANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~--------~~~~-~~~~~-~~~~~~~~~~~~~~~i~D~~G~ 66 (210)
-.++|+++|.+|.|||||+|.++...... ...| |+... .+..+.-++...+++++||||.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 35899999999999999999988533211 1112 22211 1334455778889999999994
No 366
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.22 E-value=1.1e-05 Score=61.37 Aligned_cols=88 Identities=16% Similarity=0.040 Sum_probs=52.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC--CCCCCC--CCc-eeeeeeEEEEECCEEEEEEEEeCCCccccccc------Cc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDY--IPT-VFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL------RP 74 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~ 74 (210)
.+..-|.|+|++++|||+|+|++.+. .|.... .++ .+..........+....+.++||+|....... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 45567899999999999999999988 654221 122 22222211111124467889999997543221 11
Q ss_pred ccccC--ccEEEEEEECCChh
Q 028362 75 LSYRG--ADVFVLAFSLVSRA 93 (210)
Q Consensus 75 ~~~~~--~~~~i~v~d~~~~~ 93 (210)
..+.. ++.+|+..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 22233 67777776665443
No 367
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.20 E-value=1.2e-05 Score=64.15 Aligned_cols=95 Identities=12% Similarity=0.074 Sum_probs=54.1
Q ss_pred EEEEEEEEeCCCccccccc--------C---ccc-ccCccEEEEEEECCChhH-HHHHHHHHHHHHhccCCCCcEEEEee
Q 028362 54 TTVNLGLWDTAGQEDYNRL--------R---PLS-YRGADVFVLAFSLVSRAS-YENVLKKWIPELQHYSPGVPVVLVGT 120 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~--------~---~~~-~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~n 120 (210)
..+.+.++||||....... . ... -...+..++|.|++.... +..+ ..+.+. --+--+|+|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a-~~f~~~------~~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA-KAFHEA------VGLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH-HHHHhh------CCCCEEEEE
Confidence 4578899999997543211 0 001 124667899999985432 2221 222211 124468889
Q ss_pred CcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHH
Q 028362 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172 (210)
Q Consensus 121 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 172 (210)
|.|..... -.+...+...+. |+..++ +|++++++-
T Consensus 268 KlD~t~~~--------------G~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAKG--------------GVVFAIADELGI-PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCCc--------------cHHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence 99965432 234444556665 666666 788887653
No 368
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.19 E-value=8.3e-06 Score=64.40 Aligned_cols=90 Identities=22% Similarity=0.174 Sum_probs=60.3
Q ss_pred CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (210)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (210)
....+..+|++++|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.+.. ..+...++.+..
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~------------~~~~~~~~~~~~ 79 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPE------------VTKKWIEYFEEQ 79 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHH------------HHHHHHHHHHHc
Confidence 3446788999999999977654332 1222232 268999999999995321 112222222333
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 153 GASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 153 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
+. +++.+||+++.|++++.+.+.+.+..
T Consensus 80 ~~-~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 80 GI-KALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred CC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 43 67889999999999999988877643
No 369
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.18 E-value=1.4e-05 Score=63.05 Aligned_cols=84 Identities=21% Similarity=0.147 Sum_probs=57.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEE---------------CCEEEEEEEEeCCCcccc-
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVA---------------EGTTVNLGLWDTAGQEDY- 69 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~---------------~~~~~~~~i~D~~G~~~~- 69 (210)
..+++.|+|.|+||||||+|.+..........|....+- ...+.+ ......++++|++|.-.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 568999999999999999999998776665555442221 111211 125578999999985432
Q ss_pred ---cccCccc---ccCccEEEEEEECC
Q 028362 70 ---NRLRPLS---YRGADVFVLAFSLV 90 (210)
Q Consensus 70 ---~~~~~~~---~~~~~~~i~v~d~~ 90 (210)
..+-..+ ++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 3333333 56799999988875
No 370
>PRK14974 cell division protein FtsY; Provisional
Probab=98.17 E-value=3.8e-06 Score=67.38 Aligned_cols=95 Identities=14% Similarity=0.093 Sum_probs=54.5
Q ss_pred EEEEEEEeCCCcccccc-cCc---cc--ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362 55 TVNLGLWDTAGQEDYNR-LRP---LS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 128 (210)
.+.+.++||+|...... +.. .. .-..+..++|.|++......+....+...+ -+--+|+||.|....-
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~------~~~giIlTKlD~~~~~ 295 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV------GIDGVILTKVDADAKG 295 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC------CCCEEEEeeecCCCCc
Confidence 35689999999754321 111 11 124778899999976543332222222211 1345778999996543
Q ss_pred ccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHH
Q 028362 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 172 (210)
. -+...+...+. |+..++ +|++++++.
T Consensus 296 G--------------~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 296 G--------------AALSIAYVIGK-PILFLG--VGQGYDDLI 322 (336)
T ss_pred c--------------HHHHHHHHHCc-CEEEEe--CCCChhhcc
Confidence 2 23344444565 666665 788887765
No 371
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=5.6e-06 Score=71.20 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=77.2
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcC--CCCCC------------CCCceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD------------YIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED 68 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~ 68 (210)
.....-+++++..-..|||||+..|+.. ..... ...+.+.+..- .+..--+++.+.++|+|||-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 4456678999999999999999998842 12111 01111222111 122233668899999999999
Q ss_pred ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcc
Q 028362 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123 (210)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 123 (210)
|.+......+-+|+++..+|+...-.-+.. ..+..... ....+++|.||+|
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~--~vlrq~~~--~~~~~~lvinkid 135 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTY--AVLRQAWI--EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHH--HHHHHHHH--ccCceEEEEehhh
Confidence 999999999999999999999755333322 22222111 3567888999999
No 372
>PRK01889 GTPase RsgA; Reviewed
Probab=98.12 E-value=1.5e-05 Score=64.74 Aligned_cols=85 Identities=20% Similarity=0.192 Sum_probs=57.1
Q ss_pred cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
...++|.+++|+++..+-.... .+.++..++. .++|.+||+||+|+.+... ...+....+ ..+.
T Consensus 109 iaANvD~vliV~s~~p~~~~~~-ldr~L~~a~~--~~i~piIVLNK~DL~~~~~----------~~~~~~~~~--~~g~- 172 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRR-IERYLALAWE--SGAEPVIVLTKADLCEDAE----------EKIAEVEAL--APGV- 172 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhH-HHHHHHHHHH--cCCCEEEEEEChhcCCCHH----------HHHHHHHHh--CCCC-
Confidence 3678999999999964333333 3566666555 4678899999999964310 011222222 2233
Q ss_pred EEEEeccCCCCCHHHHHHHHH
Q 028362 156 YYIECSSKTQQNVKAVFDAAI 176 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~ 176 (210)
+.+.+|++++.|++++..++.
T Consensus 173 ~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 173 PVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred cEEEEECCCCccHHHHHHHhh
Confidence 778899999999999988874
No 373
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.11 E-value=1.8e-05 Score=73.56 Aligned_cols=113 Identities=25% Similarity=0.214 Sum_probs=63.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCC----CCc--eeeeeeEEEEECCEEEEEEEEeCCCcc--------cccccCccc
Q 028362 11 CVTVGDGAVGKTCMLICYTSNKFPTDY----IPT--VFDNFSANVVAEGTTVNLGLWDTAGQE--------DYNRLRPLS 76 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~ 76 (210)
.+|+|++|+||||+++.- +-.++-.. ..+ .+.+......+.+ .-+++|++|.. .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999999876 22232110 001 1111111122222 23579999932 122334444
Q ss_pred c---------cCccEEEEEEECCCh-----hHHHH---HHHHHHHHHhcc-CCCCcEEEEeeCcccccc
Q 028362 77 Y---------RGADVFVLAFSLVSR-----ASYEN---VLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 77 ~---------~~~~~~i~v~d~~~~-----~s~~~---~~~~~~~~~~~~-~~~~piilv~nK~D~~~~ 127 (210)
+ +-.+++|+++|+.+- +.... .....++.+... ....||.+|+||+|+..-
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 2 247899999999642 21111 123334444433 368999999999998644
No 374
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=2.4e-05 Score=61.72 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=97.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHc-------CC---CCCC-CCC---ceeeeee---EEEEECCEEEEEEEEeCCCcc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTS-------NK---FPTD-YIP---TVFDNFS---ANVVAEGTTVNLGLWDTAGQE 67 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~-------~~---~~~~-~~~---~~~~~~~---~~~~~~~~~~~~~i~D~~G~~ 67 (210)
.+.+.+|.-+|.-..|||||-.++.. .+ |.+- .-| ..+.++. ..+......|. =.|+||+.
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYa--H~DCPGHA 128 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYA--HTDCPGHA 128 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccc--cCCCCchH
Confidence 45778999999999999999887662 11 1110 011 1122221 12222333443 38999999
Q ss_pred cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (210)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (210)
+|-.....-....|+.|+|+..+|...-+.- +.++ +.+...=..+++..||.|+.++.+ +......++.+
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTr-EHlL--LArQVGV~~ivvfiNKvD~V~d~e-------~leLVEmE~RE 198 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTR-EHLL--LARQVGVKHIVVFINKVDLVDDPE-------MLELVEMEIRE 198 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchH-HHHH--HHHHcCCceEEEEEecccccCCHH-------HHHHHHHHHHH
Confidence 9876666567778999999999997654432 2221 222122245778889999986543 22234556677
Q ss_pred HHHHcCC----cEEEEecc---CCCCC-------HHHHHHHHHHHHhCC
Q 028362 148 LRKQIGA----SYYIECSS---KTQQN-------VKAVFDAAIKVVIKP 182 (210)
Q Consensus 148 ~~~~~~~----~~~~~~Sa---~~~~~-------i~~~~~~i~~~~~~~ 182 (210)
+..+++. .|.+.-|| ..+.+ |.++++.+-..+..+
T Consensus 199 lLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P 247 (449)
T KOG0460|consen 199 LLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP 247 (449)
T ss_pred HHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence 7777753 47776444 45532 445555444444433
No 375
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.09 E-value=1.5e-05 Score=62.39 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=54.8
Q ss_pred EEEEEEEEeCCCcccccccCc------------ccccCccEEEEEEECCChhH-HHHHHHHHHHHHhccCCCCcEEEEee
Q 028362 54 TTVNLGLWDTAGQEDYNRLRP------------LSYRGADVFVLAFSLVSRAS-YENVLKKWIPELQHYSPGVPVVLVGT 120 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~------------~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~n 120 (210)
..+.+.++||+|........- ..-..++..++|+|++.... +..+ ..+.+.+ -+--+|+|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~f~~~~------~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA-KVFNEAV------GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH-HHHHhhC------CCCEEEEE
Confidence 447889999999754322110 11123788999999975432 2221 2222211 13468899
Q ss_pred CcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHH
Q 028362 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172 (210)
Q Consensus 121 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 172 (210)
|.|...... .+.......+. |+..++ +|++++++-
T Consensus 226 KlDe~~~~G--------------~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGG--------------IILSIAYELKL-PIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCcc--------------HHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence 999865432 33444455565 665565 777787654
No 376
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=1.5e-05 Score=64.67 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=61.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCce-eeee---------------eEEEE-E-----------CCEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTV-FDNF---------------SANVV-A-----------EGTTVN 57 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~---~~~~~~-~~~~---------------~~~~~-~-----------~~~~~~ 57 (210)
--++|+|++||||||++.+|....... ...-.. .+.+ ..... + .-....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 367899999999999999887532100 000000 0000 00000 1 013457
Q ss_pred EEEEeCCCcccccccCc---ccc---cCccEEEEEEECCCh-hHHHHHHHHHHHHHhccCCCC--cEEEEeeCcccccc
Q 028362 58 LGLWDTAGQEDYNRLRP---LSY---RGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGV--PVVLVGTKLDLRED 127 (210)
Q Consensus 58 ~~i~D~~G~~~~~~~~~---~~~---~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~--piilv~nK~D~~~~ 127 (210)
+.++|++|......... ..+ ....-.++|++.+.. +...++...|........... +-=+|+||.|....
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 78899999664332111 011 223456788888754 444444344433322111111 23477899998654
No 377
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.08 E-value=4.8e-06 Score=65.71 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~ 32 (210)
-.++++|++|||||||+|.+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 468999999999999999999754
No 378
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=1.1e-05 Score=62.04 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=43.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-----eEEEEECCEEEEEEEEeCCC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-----SANVVAEGTTVNLGLWDTAG 65 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~D~~G 65 (210)
-.++|+++|..|.|||||+..|.+-.|.....+...... ++...-.+..+++++.|+.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 358999999999999999999999887654333222222 22233357788999999998
No 379
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.03 E-value=0.00056 Score=55.96 Aligned_cols=154 Identities=18% Similarity=0.250 Sum_probs=89.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--------------CCCCCC-------ceeeee----eEEEEE-CCEEEEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKF--------------PTDYIP-------TVFDNF----SANVVA-EGTTVNLGLW 61 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~--------------~~~~~~-------~~~~~~----~~~~~~-~~~~~~~~i~ 61 (210)
.+=+.++|+-.+|||||++||-.-.. ++-.++ |+...| ...+.+ ++-.+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 35678999999999999999984210 111111 111112 122333 5778899999
Q ss_pred eCCC--------ccc--ccccCcc-------cccCc------------c--EEEEEEECC----ChhHHHHHHHHHHHHH
Q 028362 62 DTAG--------QED--YNRLRPL-------SYRGA------------D--VFVLAFSLV----SRASYENVLKKWIPEL 106 (210)
Q Consensus 62 D~~G--------~~~--~~~~~~~-------~~~~~------------~--~~i~v~d~~----~~~s~~~~~~~~~~~~ 106 (210)
|+.| +.+ -.++... -+..| . ++++.-|-+ .++.+.++.+...+.+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9997 111 0111110 01111 1 333333322 3567777766777777
Q ss_pred hccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC--CCCHHHHHHHHH
Q 028362 107 QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT--QQNVKAVFDAAI 176 (210)
Q Consensus 107 ~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~ 176 (210)
... ++|+++++|-.+-... .+.+.+.++.++|+. |.+++++.+ ...|..+++.+.
T Consensus 177 k~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cEEEeehHHcCHHHHHHHHHHHH
Confidence 664 6899999987754333 467788888899997 778877754 344555554443
No 380
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.03 E-value=1.5e-05 Score=57.35 Aligned_cols=65 Identities=11% Similarity=-0.009 Sum_probs=36.8
Q ss_pred EEEEEEEeCCCcccccccC--------cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccc
Q 028362 55 TVNLGLWDTAGQEDYNRLR--------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 124 (210)
.....++|++|-.+-.... ....-..+.++.++|..+-.........+...++... ++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad-----~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD-----RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC-----EEEEecccC
Confidence 3566789999964221111 1123357889999997544332211233444554433 668899996
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=98.02 E-value=1.2e-05 Score=65.07 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCC
Q 028362 11 CVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~ 32 (210)
++|+|.+|||||||+|.|....
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999999653
No 382
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.01 E-value=8e-06 Score=62.97 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
.++++|.+|||||||+|++....
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 67899999999999999999653
No 383
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.01 E-value=3.8e-05 Score=62.32 Aligned_cols=150 Identities=17% Similarity=0.104 Sum_probs=76.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEE-------------------------------CCEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-------------------------------EGTTVN 57 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~ 57 (210)
=-|+++|+.||||||-+-+|.....-....+..+.-...++.+ .-.++.
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d 283 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD 283 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence 3578999999999998887764332111112221111111111 115568
Q ss_pred EEEEeCCCcccccccC----cccccC--ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcE-EEEeeCccccccccc
Q 028362 58 LGLWDTAGQEDYNRLR----PLSYRG--ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHY 130 (210)
Q Consensus 58 ~~i~D~~G~~~~~~~~----~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~~~~~~ 130 (210)
+.++||.|...+.... ..++.. ..-..+|++++.... .+.+.+... ..+|+ -+|+||.|....
T Consensus 284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~------dlkei~~~f-~~~~i~~~I~TKlDET~s--- 353 (407)
T COG1419 284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYE------DLKEIIKQF-SLFPIDGLIFTKLDETTS--- 353 (407)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchH------HHHHHHHHh-ccCCcceeEEEcccccCc---
Confidence 8999999987664321 122222 234456777764421 222233333 23444 377899998653
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH-HHHH----HHHHHHHhCC
Q 028362 131 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV-KAVF----DAAIKVVIKP 182 (210)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~----~~i~~~~~~~ 182 (210)
.-....+..+.+. |.-.+ .+|.++ ++++ .++++.+..-
T Consensus 354 -----------~G~~~s~~~e~~~-PV~Yv--T~GQ~VPeDI~va~~~~Lv~~~~g~ 396 (407)
T COG1419 354 -----------LGNLFSLMYETRL-PVSYV--TNGQRVPEDIVVANPDYLVRRILGT 396 (407)
T ss_pred -----------hhHHHHHHHHhCC-CeEEE--eCCCCCCchhhhcChHHHHHHHhcc
Confidence 3344455555554 32222 245554 3333 4566666543
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.01 E-value=4.5e-05 Score=63.01 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=39.4
Q ss_pred EEEEEEEeCCCcccccc-cCc---c--cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 55 TVNLGLWDTAGQEDYNR-LRP---L--SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
.+.+.++||+|...... +.. . .....+-+++|.|++......+... .+... --+--+|+||.|....
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~----~F~~~--~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAK----AFKDS--VDVGSVIITKLDGHAK 254 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHH----HHHhc--cCCcEEEEECccCCCC
Confidence 57889999999643321 101 0 1224678999999876544333222 33221 1355688999998644
No 385
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=4.5e-05 Score=60.95 Aligned_cols=116 Identities=19% Similarity=0.168 Sum_probs=69.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC---CCCceeeeee------------EEEEEC------C--------------
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFS------------ANVVAE------G-------------- 53 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~------------~~~~~~------~-------------- 53 (210)
.=|+++|.=..||||+++-|....++.. ..||+....- ....++ +
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 4589999999999999999998877642 2333321110 001111 0
Q ss_pred ------EEEEEEEEeCCCcccc-----------cccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEE
Q 028362 54 ------TTVNLGLWDTAGQEDY-----------NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV 116 (210)
Q Consensus 54 ------~~~~~~i~D~~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 116 (210)
.--.++++|+||.-.- .....-+...+|.+|++||...-+--++. ...+..+..+ +-.+-
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--EdkiR 215 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKIR 215 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--cceeE
Confidence 1124678999994222 22222346679999999998654333332 3444454443 44566
Q ss_pred EEeeCcccccc
Q 028362 117 LVGTKLDLRED 127 (210)
Q Consensus 117 lv~nK~D~~~~ 127 (210)
||+||.|..+.
T Consensus 216 VVLNKADqVdt 226 (532)
T KOG1954|consen 216 VVLNKADQVDT 226 (532)
T ss_pred EEeccccccCH
Confidence 77899999554
No 386
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.99 E-value=5.9e-06 Score=64.52 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
..+++|.+|||||||+|+|...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 5689999999999999999963
No 387
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.95 E-value=1.4e-05 Score=65.00 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~ 32 (210)
.++.++|.+|||||||+|++....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999999743
No 388
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.87 E-value=4.3e-05 Score=56.49 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=46.7
Q ss_pred CCCcEEEEeeCcccccccc------cccC-------CCCCCcc------CHHHHHHHHHHcCCcEEEEeccCCCCCHHHH
Q 028362 111 PGVPVVLVGTKLDLREDKH------YLAD-------HPGLVPV------TTAQGEELRKQIGASYYIECSSKTQQNVKAV 171 (210)
Q Consensus 111 ~~~piilv~nK~D~~~~~~------~~~~-------~~~~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 171 (210)
-.+|-|-|.+|.|+..... ..++ +.++... ....+..+...++...|++....+.++|+.+
T Consensus 163 lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~i 242 (273)
T KOG1534|consen 163 LEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINII 242 (273)
T ss_pred hcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHH
Confidence 3789999999999977622 0000 1111111 1233445556678888999999999999999
Q ss_pred HHHHHHHHhC
Q 028362 172 FDAAIKVVIK 181 (210)
Q Consensus 172 ~~~i~~~~~~ 181 (210)
+..+-..+..
T Consensus 243 L~~ID~aiQy 252 (273)
T KOG1534|consen 243 LSYIDDAIQY 252 (273)
T ss_pred HHHHHHHHHh
Confidence 9888776653
No 389
>PRK00098 GTPase RsgA; Reviewed
Probab=97.87 E-value=2.1e-05 Score=62.40 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
.++++|.+|||||||+|.|.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999998654
No 390
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.84 E-value=0.00019 Score=56.29 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=66.0
Q ss_pred cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (210)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (210)
+....+.+.|-.++|+++.+|+--......++-..+. .++..+|++||.|+..... ...++.......
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~----------~~~~~~~~~y~~ 139 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEE----------AAVKELLREYED 139 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchH----------HHHHHHHHHHHh
Confidence 3344455688888888988887544445666655555 4677888899999987643 211345555666
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHHHH
Q 028362 152 IGASYYIECSSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 152 ~~~~~~~~~Sa~~~~~i~~~~~~i~~ 177 (210)
.+. +.+.+|++++.+++++...+..
T Consensus 140 ~gy-~v~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 140 IGY-PVLFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred CCe-eEEEecCcCcccHHHHHHHhcC
Confidence 776 7788999999999999887754
No 391
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=1.6e-05 Score=61.88 Aligned_cols=167 Identities=15% Similarity=0.157 Sum_probs=95.0
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcC---CCCCCCCCce--eeee----------------------------eEEEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTV--FDNF----------------------------SANVV 50 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~---~~~~~~~~~~--~~~~----------------------------~~~~~ 50 (210)
+.+.+++|.-+|.-..||||+++++++- +|..+....+ -..| ...+.
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 5567899999999999999999988752 1222111110 0000 00011
Q ss_pred ECCE------EEEEEEEeCCCcccccccCcccccCccEEEEEEECCCh----hHHHHHHHHHHHHHhccCCCCcEEEEee
Q 028362 51 AEGT------TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGT 120 (210)
Q Consensus 51 ~~~~------~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~n 120 (210)
..+. -..+.+.|+||++-.-...-.-..-.|++++++..+.+ ++-+.+ ..++-. .-..++++-|
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL-----aaveiM-~LkhiiilQN 187 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL-----AAVEIM-KLKHIIILQN 187 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH-----HHHHHh-hhceEEEEec
Confidence 1111 12456799999875432222122234566666655432 222222 122111 1357888899
Q ss_pred CcccccccccccCCCCCCccCHHHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 121 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
|.|+..+.... ...+.++.|.+.-. ..|++++||.-..||+-+.+.+++++.-+.+
T Consensus 188 KiDli~e~~A~--------eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 188 KIDLIKESQAL--------EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred hhhhhhHHHHH--------HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 99998765310 11234444444322 2489999999999999999999998876543
No 392
>PRK13796 GTPase YqeH; Provisional
Probab=97.77 E-value=5.3e-05 Score=61.86 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-++.++|.+|||||||+|+|...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47999999999999999999854
No 393
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00018 Score=59.38 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
-.++|+|+.|+||||++..|..
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999997764
No 394
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00091 Score=50.91 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=93.7
Q ss_pred eEEEEECCCCC--CHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEE----EEEEEEeCCCcccccccCcccccCccE
Q 028362 9 IKCVTVGDGAV--GKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTT----VNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 9 ~kv~llG~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
.-++++|-+|| ||.+|+.+|....|.....+.....+ ..-+++++. +.+.+.-.. .+.+-... ....-..+
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~-hgwtid~kyysadi~lcishic-de~~lpn~-~~a~pl~a 81 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEF-HGWTIDNKYYSADINLCISHIC-DEKFLPNA-EIAEPLQA 81 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceee-eceEecceeeecceeEEeeccc-chhccCCc-ccccceee
Confidence 45789999999 99999999998877544333222221 122233332 233222111 11221111 12233568
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccc--------------ccc-----------C----
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH--------------YLA-----------D---- 133 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~~~-----------~---- 133 (210)
++.|||++..+.+..+ +.|+.....+.-+ -.+-|+||.|..+..- +.. .
T Consensus 82 ~vmvfdlse~s~l~al-qdwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg 159 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDAL-QDWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG 159 (418)
T ss_pred EEEEEeccchhhhHHH-Hhhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence 9999999999988887 7887654332212 2356789999665411 000 0
Q ss_pred -----CCCCCccCHHHHHHHHHHcCCcEEEEeccCC------------CCCHHHHHHHHHH
Q 028362 134 -----HPGLVPVTTAQGEELRKQIGASYYIECSSKT------------QQNVKAVFDAAIK 177 (210)
Q Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~i~~ 177 (210)
..+..-.....+.+|+.++++ .+++.++.+ ..|++.+|.++-.
T Consensus 160 ssllgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~a 219 (418)
T KOG4273|consen 160 SSLLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNA 219 (418)
T ss_pred ccccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhh
Confidence 001111233456888999997 889988742 2467888877654
No 395
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00017 Score=60.99 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=19.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
-.++|+|++|+||||++..|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999988764
No 396
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.71 E-value=0.00013 Score=42.40 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=29.4
Q ss_pred CccEEEEEEECCChh--HHHHHHHHHHHHHhccCCCCcEEEEeeCcc
Q 028362 79 GADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLD 123 (210)
Q Consensus 79 ~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~D 123 (210)
-.++++|++|++... ++++. ..+...+....++.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 367999999998665 45554 567777777778999999999998
No 397
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.70 E-value=6.8e-05 Score=56.34 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=60.7
Q ss_pred EEEEEEEeCCCcccccccCcc------cccCccEEEE---EEEC---CChhHHHHHHHHHHHHHhccC-CCCcEEEEeeC
Q 028362 55 TVNLGLWDTAGQEDYNRLRPL------SYRGADVFVL---AFSL---VSRASYENVLKKWIPELQHYS-PGVPVVLVGTK 121 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~------~~~~~~~~i~---v~d~---~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK 121 (210)
+....++|+|||-++-..+.. .++.-+.=+. ..|. ++|..+... ++-.+.... -+.|=|-|+.|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK 172 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSK 172 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhH
Confidence 445677999999654221111 1222332222 3332 567766543 222222222 47888889999
Q ss_pred cccccccccc----------------cCCCCCC------ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 028362 122 LDLREDKHYL----------------ADHPGLV------PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175 (210)
Q Consensus 122 ~D~~~~~~~~----------------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 175 (210)
+|+...-... .+..+.. ..-.+.+..+.+.++...|...+..+.+++-.+...+
T Consensus 173 ~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~I 248 (290)
T KOG1533|consen 173 ADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTI 248 (290)
T ss_pred hHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHH
Confidence 9986553311 0111100 1223455666666777677666666666666655444
No 398
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00013 Score=61.77 Aligned_cols=117 Identities=15% Similarity=0.067 Sum_probs=75.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC-----CCCC-CCCcee----------eeee-EEEEECCEEEEEEEEeCCCcccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNK-----FPTD-YIPTVF----------DNFS-ANVVAEGTTVNLGLWDTAGQEDY 69 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~-----~~~~-~~~~~~----------~~~~-~~~~~~~~~~~~~i~D~~G~~~~ 69 (210)
+.-+|-+.-.-.+||||+-++.+... +.+- ...+.. .+.. .-....-.++.+.++||||+-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 34466777778899999999887321 1000 001111 1110 00111123688899999999999
Q ss_pred cccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
.-.....++.-|++++|++....-.-+.. ..|.+.-.. ++|-+...||.|.-..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~ry---~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMKRY---NVPRICFINKMDRMGA 171 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHHhc---CCCeEEEEehhhhcCC
Confidence 98888899999999999998765444443 456655332 6899999999995444
No 399
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.67 E-value=6.2e-05 Score=62.41 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=36.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 66 (210)
.+.|.++|.|||||||+||.|.+.+-.. ...|-..- +..++.+.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTK-HFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTK-HFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcc-eeEEEEcCC---CceecCCCCc
Confidence 5899999999999999999999886322 21222211 222333322 3567999995
No 400
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.65 E-value=0.00043 Score=58.14 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=45.1
Q ss_pred EEEEEeCCCccc-------------ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCc
Q 028362 57 NLGLWDTAGQED-------------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKL 122 (210)
Q Consensus 57 ~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~ 122 (210)
.+++.|+||... ..++...+..+.+++|+|+--.+-..-. ...-..+.... .....|+|++|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER---SnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER---SIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhh---hhHHHHHHhcCCCCCeeEEEEeec
Confidence 467899999432 2356667788999999998543222111 12223444444 367889999999
Q ss_pred ccccccc
Q 028362 123 DLREDKH 129 (210)
Q Consensus 123 D~~~~~~ 129 (210)
|+...+-
T Consensus 490 DlAEknl 496 (980)
T KOG0447|consen 490 DLAEKNV 496 (980)
T ss_pred chhhhcc
Confidence 9987753
No 401
>PRK13695 putative NTPase; Provisional
Probab=97.64 E-value=0.0014 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
++++|.|++|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
No 402
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.61 E-value=0.00013 Score=60.68 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=60.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC----CCC------CCCCCce-------eeeeeEEEEE----------------CC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN----KFP------TDYIPTV-------FDNFSANVVA----------------EG 53 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~----~~~------~~~~~~~-------~~~~~~~~~~----------------~~ 53 (210)
++..|+++|.+|+||||++..+... ... +.+.+.. .......+.. .-
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 4568899999999999999877631 110 1111110 0000000000 00
Q ss_pred EEEEEEEEeCCCcccccccC------cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcE-EEEeeCccccc
Q 028362 54 TTVNLGLWDTAGQEDYNRLR------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLRE 126 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~~ 126 (210)
..+.+.++||+|........ ......++.+++|+|.+...... .....+.. .+++ -+|+||.|...
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av----~~a~~F~~---~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAK----NQAKAFHE---AVGIGGIIITKLDGTA 246 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHH----HHHHHHHh---cCCCCEEEEecccCCC
Confidence 22478899999975432110 01133578899999987653221 12222222 2333 47789999854
Q ss_pred c
Q 028362 127 D 127 (210)
Q Consensus 127 ~ 127 (210)
.
T Consensus 247 ~ 247 (437)
T PRK00771 247 K 247 (437)
T ss_pred c
Confidence 4
No 403
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.59 E-value=0.0003 Score=49.38 Aligned_cols=108 Identities=15% Similarity=0.031 Sum_probs=62.4
Q ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCC
Q 028362 12 VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS 91 (210)
Q Consensus 12 ~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (210)
+.-|.+|+||||+.-.+...-- .....+...+... ......+.+.++|+|+... ......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~--~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL--GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC--CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-
Confidence 3557899999998765553211 1111111111110 0011127889999997532 22235688899999998874
Q ss_pred hhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362 92 RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (210)
Q Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 126 (210)
..++... ...++.+.......++.+|.|+.+...
T Consensus 78 ~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~~ 111 (139)
T cd02038 78 PTSITDA-YALIKKLAKQLRVLNFRVVVNRAESPK 111 (139)
T ss_pred hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCHH
Confidence 5555554 344455544434567889999987543
No 404
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00036 Score=61.49 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-++|+|+.||||||.+..+..
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 578999999999999998874
No 405
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.56 E-value=0.00048 Score=50.47 Aligned_cols=68 Identities=19% Similarity=0.176 Sum_probs=39.0
Q ss_pred EEEEEEeCCCccccccc--Cccc---ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362 56 VNLGLWDTAGQEDYNRL--RPLS---YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (210)
Q Consensus 56 ~~~~i~D~~G~~~~~~~--~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 128 (210)
....+++++|...-..+ .... .-..+.+|.|+|..+-.........+...+.... ++|+||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-----vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-----VIVLNKIDLVSDE 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-----EEEEE-GGGHHHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-----EEEEeccccCChh
Confidence 45666788885433322 0000 1235789999999665444444345556665544 7788999997653
No 406
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.53 E-value=0.00024 Score=59.67 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-++|+|+.||||||++..|..
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 588999999999999998874
No 407
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.0012 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
.-.|+++|++||||||.+..+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999987763
No 408
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.52 E-value=7.2e-05 Score=54.76 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
.||+|+|+||+||||+.++|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999976
No 409
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.49 E-value=9.1e-05 Score=50.47 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 410
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.49 E-value=0.00085 Score=50.62 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=41.1
Q ss_pred EEEEEEeCC-CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362 56 VNLGLWDTA-GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (210)
Q Consensus 56 ~~~~i~D~~-G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 125 (210)
+.+.+.||- |.+.|. ....+++|.+|.|+|.+ ..++..+ ++..+...... -.++.+|+||.|..
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS-~~sl~ta-eri~~L~~elg-~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPS-YKSLRTA-ERIKELAEELG-IKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCc-HHHHHHH-HHHHHHHHHhC-CceEEEEEeeccch
Confidence 455666764 444443 33467899999999986 4455554 44444433322 37899999999975
No 411
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.48 E-value=0.00093 Score=48.59 Aligned_cols=67 Identities=15% Similarity=0.052 Sum_probs=37.7
Q ss_pred EEEEEEEeCCCcccccccC----ccc--ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 55 TVNLGLWDTAGQEDYNRLR----PLS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
.+.+.++|++|...+.... ..+ ....+.+++|+|.....+.. .+...+..... ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~----~~~~~~~~~~~--~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV----NQAKAFNEALG--ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH----HHHHHHHhhCC--CCEEEEECCcCCCC
Confidence 4567889999974321110 111 12488999999986554332 22223322222 24577799998654
No 412
>PRK08118 topology modulation protein; Reviewed
Probab=97.48 E-value=0.00011 Score=53.35 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
||+|+|++|+|||||.+.+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999998854
No 413
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.47 E-value=0.00062 Score=56.59 Aligned_cols=85 Identities=16% Similarity=0.073 Sum_probs=46.5
Q ss_pred EEEEEEEEeCCCccccccc-Ccc-----cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 54 TTVNLGLWDTAGQEDYNRL-RPL-----SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~-~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
..+.+.++||+|....... ... ..-..+.+++|+|........ .+...+.... + ..=+|.||.|....
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~----~~a~~f~~~v-~-i~giIlTKlD~~~~ 254 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAV----NTAKTFNERL-G-LTGVVLTKLDGDAR 254 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHH----HHHHHHHhhC-C-CCEEEEeCccCccc
Confidence 3467899999996433210 000 122467889999987554332 2223333211 1 22477899997543
Q ss_pred cccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (210)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
.. .+...+...+. |+..
T Consensus 255 ~G--------------~~lsi~~~~~~-PI~f 271 (428)
T TIGR00959 255 GG--------------AALSVRSVTGK-PIKF 271 (428)
T ss_pred cc--------------HHHHHHHHHCc-CEEE
Confidence 21 25666666665 4443
No 414
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=9.5e-05 Score=60.00 Aligned_cols=116 Identities=17% Similarity=0.061 Sum_probs=80.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc--C------CCCCCCCCce--------eeee-eEEEEECCEEEEEEEEeCCCccccc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS--N------KFPTDYIPTV--------FDNF-SANVVAEGTTVNLGLWDTAGQEDYN 70 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~--~------~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~ 70 (210)
.-+|.++....+||||.-.|+.. + ..+....-|. +.++ +.-+..+=+++.+.++|+||+-+|+
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 34678889999999999998872 1 1111111110 1111 1123344566888899999999999
Q ss_pred ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
-....+++--|+++.|+|.+-.-..+.+ ..|.+.= ..++|-....||+|....
T Consensus 117 leverclrvldgavav~dasagve~qtl-tvwrqad---k~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQAD---KFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCccccee-eeehhcc---ccCCchhhhhhhhhhhhh
Confidence 9999999999999999999876555554 4565431 247899999999998665
No 415
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.45 E-value=0.00085 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
.=.+|.|.-|+|||||+|++...
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 34578899999999999999854
No 416
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.44 E-value=0.00024 Score=51.57 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=32.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 63 (210)
+|+|.|++|+|||||++++....-... .+ ..-.++.....++..+-|.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~-v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG-LP-VGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC-GG-EEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC-Cc-cceEEeecccCCCceEEEEEEEC
Confidence 689999999999999999885421111 11 12223444455666667777777
No 417
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.41 E-value=0.00069 Score=47.04 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKF 33 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~ 33 (210)
--+++.|++|+|||++++.+.....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999999987643
No 418
>PRK07261 topology modulation protein; Provisional
Probab=97.41 E-value=0.00015 Score=52.86 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
||+|+|++|+|||||.+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998743
No 419
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.40 E-value=0.00017 Score=58.07 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=38.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 66 (210)
+..+++.|+|.|+|||||+||.|..... .-...|...... ..+. -+. .+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~sm-qeV~-Ldk--~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSM-QEVK-LDK--KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhh-hhee-ccC--CceeccCCce
Confidence 5789999999999999999999998764 333334332211 1122 222 4566999994
No 420
>PRK10867 signal recognition particle protein; Provisional
Probab=97.38 E-value=0.00044 Score=57.47 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=36.7
Q ss_pred EEEEEEEEeCCCcccccc-cCc---c--cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCccccc
Q 028362 54 TTVNLGLWDTAGQEDYNR-LRP---L--SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLRE 126 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~ 126 (210)
..+.+.++||+|.-.... ... . ..-..+.+++|.|........+. ...+.. .++ .-+|.||.|...
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~----a~~F~~---~~~i~giIlTKlD~~~ 254 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNT----AKAFNE---ALGLTGVILTKLDGDA 254 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHH----HHHHHh---hCCCCEEEEeCccCcc
Confidence 347789999999643211 000 0 01246677999998765433222 223322 122 246779999754
Q ss_pred c
Q 028362 127 D 127 (210)
Q Consensus 127 ~ 127 (210)
.
T Consensus 255 r 255 (433)
T PRK10867 255 R 255 (433)
T ss_pred c
Confidence 3
No 421
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.37 E-value=0.0049 Score=49.41 Aligned_cols=76 Identities=16% Similarity=0.087 Sum_probs=43.0
Q ss_pred CccEEEEEEECCChhHHHH-HHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-CcE
Q 028362 79 GADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASY 156 (210)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 156 (210)
..|+++-|+|+..-..... ..+.....+.... +||+||+|+.... ..+..+...++++ ..+
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD-----~ivlNK~Dlv~~~------------~l~~l~~~l~~lnp~A~ 178 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD-----VIVLNKTDLVDAE------------ELEALEARLRKLNPRAR 178 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc-----EEEEecccCCCHH------------HHHHHHHHHHHhCCCCe
Confidence 3578899999865443222 2233344444433 7889999997653 2444455555554 236
Q ss_pred EEEeccCCCCCHHHHH
Q 028362 157 YIECSSKTQQNVKAVF 172 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~ 172 (210)
++.+|. .+....+++
T Consensus 179 i~~~~~-~~~~~~~ll 193 (323)
T COG0523 179 IIETSY-GDVDLAELL 193 (323)
T ss_pred EEEccc-cCCCHHHhh
Confidence 666666 334444444
No 422
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.34 E-value=0.00025 Score=42.25 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-.+|.|+.|+|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998874
No 423
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.00017 Score=55.07 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=56.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCE--EEEEEEEeCCCcccccccCccccc--Cc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT--TVNLGLWDTAGQEDYNRLRPLSYR--GA 80 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~--~~ 80 (210)
.+.+.-|++.|.. |+||+|++...+.- ....|+....|++.....+. .-...+|+++|-.....+..--+. +.
T Consensus 42 ~~~E~~I~~~Gn~--~~tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l 118 (363)
T KOG3929|consen 42 EKFEFFIGSKGNG--GKTTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL 118 (363)
T ss_pred ccceeEEEEecCC--ceeEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence 3456778888887 55999999987653 33367777777665444432 234567999997655433222222 11
Q ss_pred --cEEEEEEECCChhHHH
Q 028362 81 --DVFVLAFSLVSRASYE 96 (210)
Q Consensus 81 --~~~i~v~d~~~~~s~~ 96 (210)
=++|++.|++++..+.
T Consensus 119 ~~~slIL~LDls~p~~~W 136 (363)
T KOG3929|consen 119 RTFSLILVLDLSKPNDLW 136 (363)
T ss_pred hhhhheeeeecCChHHHH
Confidence 1678899999986443
No 424
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.00047 Score=56.06 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
.--++++|+.||||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999998873
No 425
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.30 E-value=0.00054 Score=53.67 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=36.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCC------CCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD------YIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 66 (210)
..++++.|+|-||||||+|+|.+........ ..|.........+.+-... .+.+.|+||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 4568999999999999999998875433221 1222222222223332222 2567999995
No 426
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.28 E-value=0.0002 Score=50.19 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
|+++|++|+||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998843
No 427
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00074 Score=56.25 Aligned_cols=112 Identities=15% Similarity=0.142 Sum_probs=73.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC------------CCCCCCCc--eeeeeeEE-----------------EEECCEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNK------------FPTDYIPT--VFDNFSAN-----------------VVAEGTTVN 57 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~------------~~~~~~~~--~~~~~~~~-----------------~~~~~~~~~ 57 (210)
-++.++..-..|||||-..|+... |.+..... .+.++..+ -.-++.++.
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 356788888999999999888421 11110000 01111100 001346688
Q ss_pred EEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccc
Q 028362 58 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124 (210)
Q Consensus 58 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 124 (210)
+.++|.||+-+|.+.....++--|+.+.|+|..+.--.+.- ..+.+.+.. .+.-+++.||.|.
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E---RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLVMNKMDR 162 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh---hccceEEeehhhH
Confidence 89999999999999999999999999999999876554442 334444443 3444667899995
No 428
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.25 E-value=0.0026 Score=53.04 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=53.6
Q ss_pred EEEEEEEeCCCccccc----ccCccccc---CccEEEEEEECCCh-hHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362 55 TVNLGLWDTAGQEDYN----RLRPLSYR---GADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~----~~~~~~~~---~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 126 (210)
.+.+.++|++|..... .....++. ...-.++|++.+-. ..+..+ ...+... -+--+|+||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~----~~~f~~~---~~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI----YKHFSRL---PLDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH----HHHhCCC---CCCEEEEecccccc
Confidence 4678999999975432 11111222 23456777887543 333332 2233221 12257899999954
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH-HHHH----HHHHHHHhC
Q 028362 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV-KAVF----DAAIKVVIK 181 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~----~~i~~~~~~ 181 (210)
. .-.+..+....+. |...+ .+|.++ +++. ..+++.++.
T Consensus 372 ~--------------~G~i~~~~~~~~l-Pv~yi--t~Gq~VpdDl~~a~~~~l~~~ll~ 414 (424)
T PRK05703 372 S--------------LGSILSLLIESGL-PISYL--TNGQRVPDDIKVANPEELVRLLLG 414 (424)
T ss_pred c--------------ccHHHHHHHHHCC-CEEEE--eCCCCChhhhhhCCHHHHHHHHhc
Confidence 3 2245666667776 43333 245554 3333 344555554
No 429
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.24 E-value=0.00085 Score=48.89 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=29.2
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 81 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
|++++|+|+.++.+-.+ ..+.+.+.....+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence 68999999987643221 2333332111246899999999999653
No 430
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.23 E-value=0.0016 Score=43.07 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=48.7
Q ss_pred EEEEC-CCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362 11 CVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (210)
Q Consensus 11 v~llG-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (210)
|++.| ..|+||||+...+....-. ...+....+. +..+.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~-------d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDL-------DPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeC-------CCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 56666 5789999998765532211 1122221111 111778999999864322 22567789999999876
Q ss_pred CChhHHHHHHHHHHH
Q 028362 90 VSRASYENVLKKWIP 104 (210)
Q Consensus 90 ~~~~s~~~~~~~~~~ 104 (210)
+..++... ..+++
T Consensus 72 -~~~s~~~~-~~~~~ 84 (104)
T cd02042 72 -SPLDLDGL-EKLLE 84 (104)
T ss_pred -CHHHHHHH-HHHHH
Confidence 45566555 44444
No 431
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.22 E-value=0.0022 Score=41.31 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=43.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccccc-CcccccCccEEEEEEEC
Q 028362 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-RPLSYRGADVFVLAFSL 89 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~ 89 (210)
+++.|.+|+||||+...+....-... .+ ...++ .+.++|+++....... .......++.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~--------v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KR--------VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-Ce--------EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 67889999999999987775421111 11 11222 6788999987543221 13456678888888876
Q ss_pred CCh
Q 028362 90 VSR 92 (210)
Q Consensus 90 ~~~ 92 (210)
...
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 533
No 432
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.22 E-value=0.00039 Score=42.55 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999988865
No 433
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.21 E-value=0.00021 Score=51.52 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999965
No 434
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.20 E-value=0.00037 Score=51.45 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
.=|+|+|++|||||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999999864
No 435
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.17 E-value=0.00048 Score=50.07 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=22.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.+..-+.|+|.+|+|||||++++...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 34557899999999999999999865
No 436
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.00035 Score=53.18 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
|+|+|++|||||||++.+.+=
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999877653
No 437
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.16 E-value=0.00052 Score=51.58 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=23.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.+...|.|.|++|||||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999988864
No 438
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.16 E-value=0.00053 Score=51.50 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.+..-|+|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45567889999999999999999754
No 439
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.15 E-value=0.00054 Score=51.43 Aligned_cols=29 Identities=17% Similarity=0.027 Sum_probs=24.3
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 3 SSASRFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 3 ~~~~~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
|..++..-|+|.|++|+|||||++.+.+.
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34566678999999999999999998853
No 440
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.00079 Score=61.90 Aligned_cols=112 Identities=25% Similarity=0.216 Sum_probs=59.2
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCC--CC----CCCceeeeeeEEEEECCEEEEEEEEeCCCccc--------ccccCccc
Q 028362 11 CVTVGDGAVGKTCMLICYTSNKFP--TD----YIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLS 76 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 76 (210)
.+|+|++|+||||++..- +..|+ +. .....+ +..-...+.+ .-+++||.|... -...|..+
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHH
Confidence 479999999999999532 22221 10 000111 0000111111 235689888321 12334322
Q ss_pred ---------ccCccEEEEEEECCCh-----hHHHHH---HHHHHHHHhc-cCCCCcEEEEeeCcccccc
Q 028362 77 ---------YRGADVFVLAFSLVSR-----ASYENV---LKKWIPELQH-YSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 77 ---------~~~~~~~i~v~d~~~~-----~s~~~~---~~~~~~~~~~-~~~~~piilv~nK~D~~~~ 127 (210)
.+-.+++|+..|+++- ..-... +..-++++.. ..-..|+.+++||.|+..-
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 3347899999999642 211111 1222333332 2358999999999999764
No 441
>PRK06217 hypothetical protein; Validated
Probab=97.08 E-value=0.00053 Score=50.44 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
.+|+|+|.+|+||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
No 442
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.08 E-value=0.00049 Score=52.02 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
++|+|++|||||||+|-+..-
T Consensus 34 vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999887754
No 443
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.07 E-value=0.0021 Score=50.19 Aligned_cols=112 Identities=22% Similarity=0.133 Sum_probs=59.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC---------CCCCC--------ceeeeeeEEEEE---------------CCEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFP---------TDYIP--------TVFDNFSANVVA---------------EGTTV 56 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~---------~~~~~--------~~~~~~~~~~~~---------------~~~~~ 56 (210)
-+++++|++|+||||++..+...... ..... +........... ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 58999999999999999877532110 00000 000000011111 11246
Q ss_pred EEEEEeCCCcccccc-c---Ccccc--cCccEEEEEEECCC-hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 57 NLGLWDTAGQEDYNR-L---RPLSY--RGADVFVLAFSLVS-RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 57 ~~~i~D~~G~~~~~~-~---~~~~~--~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
.+.++|++|...... . +..++ ...+-.++|.|++. .....+ ++..+.. -.+--+|+||.|....
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~----~~~~f~~---~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE----IITNFKD---IHIDGIVFTKFDETAS 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH----HHHHhCC---CCCCEEEEEeecCCCC
Confidence 889999999764321 1 11111 23456789999863 333332 2233332 1233477899998754
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.06 E-value=0.00054 Score=51.11 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|+|||||++.+..=
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999877643
No 445
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.05 E-value=0.00049 Score=47.10 Aligned_cols=21 Identities=19% Similarity=0.063 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988865
No 446
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.03 E-value=0.00073 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
...+||+|+|+|||||||+..+|..
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998874
No 447
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0011 Score=53.73 Aligned_cols=164 Identities=15% Similarity=0.099 Sum_probs=92.8
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------CC----CCce------eeeeeE-EEEECC
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----------------DY----IPTV------FDNFSA-NVVAEG 53 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~-----------------~~----~~~~------~~~~~~-~~~~~~ 53 (210)
..+.+++++++|.-.+||||+-..+... ..+. -| ..+. +.+... ....+-
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 3467899999999999999998765521 0000 00 0000 011111 111222
Q ss_pred EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh---HHHHH--HHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 128 (210)
..-.|++.|.||+..|......-...||..++|+++-..+ .|+.- ... ...+..-..-...|++.||.|-+..+
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTRE-ha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhH-HHHHHHhhccceEEEEEEeccCCccC
Confidence 3456889999999998776666677889999998874322 11110 001 11111111345778899999986553
Q ss_pred ccccCCCCCCccCHHHHHHHHHHcC-----CcEEEEeccCCCCCHHHHH
Q 028362 129 HYLADHPGLVPVTTAQGEELRKQIG-----ASYYIECSSKTQQNVKAVF 172 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~ 172 (210)
. ..+......+....+...++ ...|+++|..+|.++++.-
T Consensus 234 W----s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 234 W----SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred c----chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 2 00111123344444544433 2468899999999998754
No 448
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.00037 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~ 32 (210)
.=++|.||+|||||||++.|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999999664
No 449
>PRK03839 putative kinase; Provisional
Probab=97.03 E-value=0.00064 Score=49.80 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
+|+|+|.+|+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988754
No 450
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.01 E-value=0.00065 Score=47.56 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
++|+|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 451
>PRK14530 adenylate kinase; Provisional
Probab=97.01 E-value=0.00065 Score=51.32 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
+|+|+|+|||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998874
No 452
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.99 E-value=0.00066 Score=50.06 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
No 453
>PLN02674 adenylate kinase
Probab=96.98 E-value=0.00066 Score=52.13 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=23.2
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
..+...+|+|+|+||+||+|+..++..
T Consensus 27 ~~~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 27 SSKPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccccCceEEEECCCCCCHHHHHHHHHH
Confidence 345568999999999999999998875
No 454
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.97 E-value=0.00073 Score=46.45 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCC
Q 028362 11 CVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~ 32 (210)
|++.|++|+|||++++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999888653
No 455
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.96 E-value=0.0007 Score=49.49 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 456
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.95 E-value=0.00075 Score=49.60 Aligned_cols=22 Identities=18% Similarity=0.031 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
--|+++|++||||||+++++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999983
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.94 E-value=0.0011 Score=45.55 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFP 34 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~ 34 (210)
-.++|+|++|+||||++..+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999876543
No 458
>PRK08233 hypothetical protein; Provisional
Probab=96.93 E-value=0.001 Score=48.64 Aligned_cols=24 Identities=17% Similarity=-0.015 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
..-|+|.|.+|+|||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999854
No 459
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.0021 Score=47.99 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 028362 11 CVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~ 30 (210)
.+++||+|+|||||++.|..
T Consensus 36 TAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 47999999999999987764
No 460
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.00079 Score=48.41 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 028362 9 IKCVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~ 29 (210)
.+|+|.|.||+||||++++|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 379999999999999999998
No 461
>PRK07429 phosphoribulokinase; Provisional
Probab=96.90 E-value=0.0013 Score=52.92 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.4
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
|.+...+.+-|.|.|++|+|||||++.+..
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHh
Confidence 666667889999999999999999998884
No 462
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.90 E-value=0.00082 Score=46.75 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57899999999999998777553
No 463
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.89 E-value=0.00093 Score=48.85 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999864
No 464
>PRK14532 adenylate kinase; Provisional
Probab=96.89 E-value=0.00095 Score=49.22 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
+|+++|+||+||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999974
No 465
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.88 E-value=0.001 Score=50.92 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
+..+|++|+|.+|+|||+|+..+...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999888754
No 466
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.88 E-value=0.00089 Score=47.07 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
.|.|+|+.|+|||||+..|.+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988653
No 467
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.88 E-value=0.00096 Score=44.42 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 028362 10 KCVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~ 29 (210)
.++|+|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 57999999999999998875
No 468
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.87 E-value=0.022 Score=46.22 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
.+|.|.-|+|||||++++...
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578899999999999999854
No 469
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.86 E-value=0.005 Score=41.03 Aligned_cols=99 Identities=15% Similarity=0.069 Sum_probs=56.2
Q ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh
Q 028362 14 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 93 (210)
Q Consensus 14 lG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 93 (210)
=+..|+||||+.-.+...--......+.-.+.... ....+.++|+|+..... ....+..+|.++++.+. +..
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~-~~~ 77 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----FGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQ-DLP 77 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----CCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecC-ChH
Confidence 35578999998776553211110112111111000 01167889999864332 23356789999998876 455
Q ss_pred HHHHHHHHHHHHHhccC-C-CCcEEEEeeC
Q 028362 94 SYENVLKKWIPELQHYS-P-GVPVVLVGTK 121 (210)
Q Consensus 94 s~~~~~~~~~~~~~~~~-~-~~piilv~nK 121 (210)
++..+ ..+++.++... + ...+.+|+|+
T Consensus 78 s~~~~-~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNA-KRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence 56665 56666666554 3 4567777775
No 470
>PRK13949 shikimate kinase; Provisional
Probab=96.85 E-value=0.0011 Score=48.08 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
+|+|+|++|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998774
No 471
>PRK14531 adenylate kinase; Provisional
Probab=96.85 E-value=0.0011 Score=48.70 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
.+|+++|+||+||||+..++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988743
No 472
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.85 E-value=0.00093 Score=49.38 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
+|+|+|++|+||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998854
No 473
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.81 E-value=0.0011 Score=48.51 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
|+++|+|||||||+..++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988753
No 474
>PRK02496 adk adenylate kinase; Provisional
Probab=96.80 E-value=0.0014 Score=48.23 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
.|++|+|++|+||||++..+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998874
No 475
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.80 E-value=0.0011 Score=49.34 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
|.|.|++|+|||||++.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988764
No 476
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.80 E-value=0.0013 Score=48.16 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 028362 10 KCVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~ 29 (210)
.++|+|+.|+|||||++.+.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999875
No 477
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.0012 Score=53.05 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 028362 11 CVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~ 30 (210)
++++|++|||||||++.+.+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999987774
No 478
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.78 E-value=0.0011 Score=49.84 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
||+|+|+||+||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 479
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.78 E-value=0.0012 Score=50.93 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 028362 11 CVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~ 30 (210)
++|+|+.|+|||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57999999999999998886
No 480
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.77 E-value=0.12 Score=37.40 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=85.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
.......|+++|..+.++..|..++....-. +...+..-. -.|=-.+... .=...|.+
T Consensus 11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~l~Vh~a~--------sLPLp~e~~~----lRprIDlI 68 (176)
T PF11111_consen 11 PELNTATILLVGTEEALLQQLAEAMLEEDKE----------FKLKVHLAK--------SLPLPSENNN----LRPRIDLI 68 (176)
T ss_pred CCcceeEEEEecccHHHHHHHHHHHHhhccc----------eeEEEEEec--------cCCCcccccC----CCceeEEE
Confidence 3445679999999999999999999853210 111111000 0000001111 12247899
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
+|++|....-++..+ +.-+..+.....--.+.++++-........ +...+..+++..|+. |++...-.
T Consensus 69 VFvinl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~s----------v~~~~V~kla~~y~~-plL~~~le 136 (176)
T PF11111_consen 69 VFVINLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHCS----------VHPNEVRKLAATYNS-PLLFADLE 136 (176)
T ss_pred EEEEecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCcccccc----------cCHHHHHHHHHHhCC-CEEEeecc
Confidence 999999999999887 454444443332233444454444433222 788999999999996 77777666
Q ss_pred CCCCHHHHHHHHHHHH
Q 028362 164 TQQNVKAVFDAAIKVV 179 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~ 179 (210)
+.++...+=+.+.+.+
T Consensus 137 ~~~~~~~lAqRLL~~l 152 (176)
T PF11111_consen 137 NEEGRTSLAQRLLRML 152 (176)
T ss_pred cchHHHHHHHHHHHHH
Confidence 6666655555555544
No 481
>PLN02200 adenylate kinase family protein
Probab=96.77 E-value=0.0018 Score=49.58 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=21.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
..+.|+|+|+||+||||+..++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998874
No 482
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.76 E-value=0.0012 Score=46.21 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
|+|+|++|+|||+|++.+...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999988743
No 483
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.76 E-value=0.0014 Score=47.75 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
+++|+|++|+|||||+|-+.+=.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 68999999999999999877533
No 484
>PRK00625 shikimate kinase; Provisional
Probab=96.75 E-value=0.0015 Score=47.68 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
+|+++|.+||||||+.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988643
No 485
>PHA00729 NTP-binding motif containing protein
Probab=96.73 E-value=0.002 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
...+|+|.|+||+|||||+.++...
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998764
No 486
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0012 Score=46.41 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=22.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
..-.+|+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 3457999999999999999999983
No 487
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.0015 Score=49.45 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-|+|+|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999988776
No 488
>PRK14527 adenylate kinase; Provisional
Probab=96.69 E-value=0.0021 Score=47.64 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+.--|+++|+||+||||+..++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998874
No 489
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.69 E-value=0.0015 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
--|+|+|++|+|||||++.+...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999988864
No 490
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.68 E-value=0.0021 Score=52.11 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCcc-
Q 028362 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD- 81 (210)
Q Consensus 3 ~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~- 81 (210)
++.++.|-|.++|.|++|||++||.|-..+...- .|-.+.+-.-.+..--+.+.+ +|+||. .+..+|
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLmkrIfL--IDcPGv---------Vyps~ds 369 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLMKRIFL--IDCPGV---------VYPSSDS 369 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHHhceeE--ecCCCc---------cCCCCCc
Q ss_pred -------EEEEEEECCChhHH
Q 028362 82 -------VFVLAFSLVSRASY 95 (210)
Q Consensus 82 -------~~i~v~d~~~~~s~ 95 (210)
+++=|=.+.+++.+
T Consensus 370 et~ivLkGvVRVenv~~pe~y 390 (572)
T KOG2423|consen 370 ETDIVLKGVVRVENVKNPEDY 390 (572)
T ss_pred hHHHHhhceeeeeecCCHHHH
No 491
>PRK01889 GTPase RsgA; Reviewed
Probab=96.67 E-value=0.0017 Score=52.92 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
+++++|.+|+|||||+|.+.+..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhc
Confidence 78999999999999999998643
No 492
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.66 E-value=0.0018 Score=47.46 Aligned_cols=23 Identities=22% Similarity=0.188 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 67899999999999998877643
No 493
>PRK14529 adenylate kinase; Provisional
Probab=96.64 E-value=0.0019 Score=49.04 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
++|+|+|+||+||||+.+++..
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988874
No 494
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.64 E-value=0.0016 Score=49.44 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
|.|.|++|||||||++.+...
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 678999999999999988854
No 495
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.0018 Score=47.76 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-|+++|++|+|||||+|-+.+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 478999999999999997764
No 496
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.62 E-value=0.002 Score=48.63 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4689999999999999888764
No 497
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.62 E-value=0.0021 Score=47.44 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.++|+|++|+||||+++.+.+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999988754
No 498
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.59 E-value=0.0022 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999988864
No 499
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.59 E-value=0.0018 Score=44.58 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
=++|.|++|+|||++++++...
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHH
Confidence 3689999999999999999865
No 500
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.59 E-value=0.0022 Score=48.41 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999888864
Done!