Query 028362
Match_columns 210
No_of_seqs 130 out of 1575
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 17:00:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1E-40 3.5E-45 251.0 17.2 165 6-182 11-177 (216)
2 2j0v_A RAC-like GTP-binding pr 100.0 3.3E-37 1.1E-41 231.3 20.8 198 2-201 3-204 (212)
3 3reg_A RHO-like small GTPase; 100.0 5.3E-35 1.8E-39 216.4 22.6 172 5-184 20-191 (194)
4 3oes_A GTPase rhebl1; small GT 100.0 2.4E-35 8.3E-40 219.5 18.8 181 3-199 19-201 (201)
5 3bwd_D RAC-like GTP-binding pr 100.0 7.1E-36 2.4E-40 218.5 15.4 180 2-181 2-181 (182)
6 4dsu_A GTPase KRAS, isoform 2B 100.0 2.7E-35 9.3E-40 216.5 18.5 181 6-199 2-189 (189)
7 3q3j_B RHO-related GTP-binding 100.0 4.9E-35 1.7E-39 220.1 20.2 181 5-185 24-207 (214)
8 2atx_A Small GTP binding prote 100.0 7.3E-35 2.5E-39 215.6 20.7 178 4-181 14-193 (194)
9 3tw8_B RAS-related protein RAB 100.0 7.2E-35 2.5E-39 212.7 20.2 173 1-185 2-175 (181)
10 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.8E-34 6.3E-39 211.5 22.2 180 5-184 2-183 (186)
11 1m7b_A RND3/RHOE small GTP-bin 100.0 9.1E-35 3.1E-39 213.5 19.8 179 4-182 3-184 (184)
12 3t5g_A GTP-binding protein RHE 100.0 1.8E-34 6.1E-39 211.1 21.1 169 4-184 2-172 (181)
13 1gwn_A RHO-related GTP-binding 100.0 6.1E-35 2.1E-39 218.2 18.9 181 1-181 21-204 (205)
14 2bov_A RAla, RAS-related prote 100.0 1.2E-34 4E-39 216.1 19.8 165 5-181 11-177 (206)
15 2fu5_C RAS-related protein RAB 100.0 2.8E-35 9.4E-40 215.7 16.0 170 1-182 1-172 (183)
16 2q3h_A RAS homolog gene family 100.0 2.1E-34 7.2E-39 214.2 20.7 179 4-182 16-196 (201)
17 3c5c_A RAS-like protein 12; GD 100.0 3.7E-34 1.3E-38 210.9 20.5 165 4-181 17-186 (187)
18 2bcg_Y Protein YP2, GTP-bindin 100.0 9E-34 3.1E-38 211.7 21.6 170 1-182 1-172 (206)
19 2fn4_A P23, RAS-related protei 100.0 6.7E-34 2.3E-38 207.6 20.2 170 1-182 2-173 (181)
20 2j1l_A RHO-related GTP-binding 100.0 5.8E-34 2E-38 214.2 20.3 177 6-182 32-210 (214)
21 2iwr_A Centaurin gamma 1; ANK 100.0 2.9E-34 9.8E-39 209.4 17.8 166 2-182 1-170 (178)
22 3kkq_A RAS-related protein M-R 100.0 5.5E-34 1.9E-38 208.8 19.2 165 5-181 15-182 (183)
23 1c1y_A RAS-related protein RAP 100.0 8.1E-34 2.8E-38 204.5 19.2 163 7-180 2-166 (167)
24 3ihw_A Centg3; RAS, centaurin, 100.0 1.1E-33 3.9E-38 207.9 20.2 164 4-182 16-181 (184)
25 1z08_A RAS-related protein RAB 100.0 1.7E-33 5.7E-38 203.6 20.8 165 5-181 3-169 (170)
26 2bme_A RAB4A, RAS-related prot 100.0 8E-34 2.7E-38 208.4 19.2 170 1-182 3-174 (186)
27 1u8z_A RAS-related protein RAL 100.0 1.1E-33 3.8E-38 203.8 19.6 164 6-181 2-167 (168)
28 2gco_A H9, RHO-related GTP-bin 100.0 2.6E-33 8.9E-38 208.6 21.9 176 6-181 23-200 (201)
29 2fv8_A H6, RHO-related GTP-bin 100.0 3.2E-33 1.1E-37 209.0 22.3 179 5-183 22-202 (207)
30 3tkl_A RAS-related protein RAB 100.0 1.2E-33 4.2E-38 209.0 19.7 169 4-184 12-182 (196)
31 2hup_A RAS-related protein RAB 100.0 5E-34 1.7E-38 212.6 17.4 167 5-182 26-194 (201)
32 2gf0_A GTP-binding protein DI- 100.0 4.8E-34 1.7E-38 211.7 16.4 164 6-182 6-172 (199)
33 2ew1_A RAS-related protein RAB 100.0 1.6E-33 5.4E-38 210.0 18.9 166 5-182 23-190 (201)
34 1r2q_A RAS-related protein RAB 100.0 3.3E-33 1.1E-37 201.8 20.1 164 5-180 3-168 (170)
35 2efe_B Small GTP-binding prote 100.0 4.1E-33 1.4E-37 203.6 20.6 167 5-183 9-177 (181)
36 1z2a_A RAS-related protein RAB 100.0 3.5E-33 1.2E-37 201.4 20.1 164 6-181 3-167 (168)
37 4gzl_A RAS-related C3 botulinu 100.0 2.4E-33 8.3E-38 209.3 19.3 175 5-179 27-203 (204)
38 1z0j_A RAB-22, RAS-related pro 100.0 8.2E-33 2.8E-37 199.8 21.2 164 5-180 3-168 (170)
39 2gf9_A RAS-related protein RAB 100.0 8.1E-33 2.8E-37 203.8 21.6 165 5-181 19-185 (189)
40 3cpj_B GTP-binding protein YPT 100.0 7.3E-33 2.5E-37 209.4 21.8 168 6-185 11-180 (223)
41 2a5j_A RAS-related protein RAB 100.0 2.9E-33 9.9E-38 206.6 19.2 166 4-181 17-184 (191)
42 1z0f_A RAB14, member RAS oncog 100.0 4.7E-33 1.6E-37 202.7 19.7 166 4-181 11-178 (179)
43 2nzj_A GTP-binding protein REM 100.0 2.9E-33 9.8E-38 203.3 18.5 164 6-181 2-169 (175)
44 1ek0_A Protein (GTP-binding pr 100.0 5.8E-33 2E-37 200.5 19.8 166 7-181 2-169 (170)
45 3q72_A GTP-binding protein RAD 100.0 3.7E-33 1.3E-37 201.1 18.6 161 8-181 2-164 (166)
46 1vg8_A RAS-related protein RAB 100.0 2.4E-33 8.1E-38 209.3 18.1 170 1-182 1-176 (207)
47 2g6b_A RAS-related protein RAB 100.0 1.4E-32 4.8E-37 200.6 21.7 167 4-182 6-175 (180)
48 2atv_A RERG, RAS-like estrogen 100.0 2.2E-33 7.4E-38 208.1 17.6 166 3-181 23-191 (196)
49 1x3s_A RAS-related protein RAB 100.0 1.1E-32 3.7E-37 203.7 20.9 169 2-183 9-180 (195)
50 2fg5_A RAB-22B, RAS-related pr 100.0 4.7E-33 1.6E-37 205.7 19.0 167 4-182 19-187 (192)
51 2a9k_A RAS-related protein RAL 100.0 6.6E-33 2.3E-37 203.3 19.5 165 5-181 15-181 (187)
52 2oil_A CATX-8, RAS-related pro 100.0 8E-33 2.7E-37 204.4 20.0 167 4-182 21-189 (193)
53 1ky3_A GTP-binding protein YPT 100.0 2.4E-33 8.1E-38 204.8 16.6 171 1-181 1-178 (182)
54 2hxs_A RAB-26, RAS-related pro 100.0 2.8E-33 9.6E-38 204.0 16.7 167 5-183 3-175 (178)
55 1kao_A RAP2A; GTP-binding prot 100.0 5.6E-33 1.9E-37 199.9 18.0 162 7-180 2-165 (167)
56 1zbd_A Rabphilin-3A; G protein 100.0 1.8E-32 6.1E-37 204.1 20.9 167 4-182 4-172 (203)
57 2o52_A RAS-related protein RAB 100.0 3.9E-33 1.3E-37 207.5 17.3 166 5-182 22-189 (200)
58 2g3y_A GTP-binding protein GEM 100.0 8E-33 2.7E-37 207.4 18.9 165 5-181 34-203 (211)
59 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.8E-32 6.2E-37 199.5 20.3 166 5-182 4-175 (177)
60 3bc1_A RAS-related protein RAB 100.0 5.6E-33 1.9E-37 204.8 17.5 167 4-182 7-186 (195)
61 2p5s_A RAS and EF-hand domain 100.0 7.8E-33 2.7E-37 205.6 17.8 172 4-181 24-197 (199)
62 3q85_A GTP-binding protein REM 100.0 1.6E-32 5.4E-37 198.4 18.9 163 8-182 2-168 (169)
63 2il1_A RAB12; G-protein, GDP, 100.0 5.9E-33 2E-37 205.2 16.9 166 5-181 23-190 (192)
64 1g16_A RAS-related protein SEC 100.0 1E-32 3.5E-37 199.3 17.8 163 7-182 2-166 (170)
65 2erx_A GTP-binding protein DI- 100.0 9.2E-33 3.2E-37 199.8 17.5 163 7-181 2-167 (172)
66 3con_A GTPase NRAS; structural 100.0 3.4E-32 1.2E-36 200.5 20.3 165 4-181 17-183 (190)
67 2y8e_A RAB-protein 6, GH09086P 100.0 2E-32 6.7E-37 199.4 18.8 164 6-181 12-177 (179)
68 3cbq_A GTP-binding protein REM 100.0 9.7E-33 3.3E-37 204.7 16.5 166 6-183 21-190 (195)
69 3dz8_A RAS-related protein RAB 100.0 5.8E-34 2E-38 210.4 9.7 167 4-182 19-187 (191)
70 1z06_A RAS-related protein RAB 100.0 2.8E-32 9.7E-37 200.9 17.7 164 5-180 17-187 (189)
71 2ce2_X GTPase HRAS; signaling 100.0 6.8E-32 2.3E-36 193.9 19.2 162 7-181 2-165 (166)
72 3clv_A RAB5 protein, putative; 100.0 1.2E-31 4E-36 199.2 20.3 165 3-181 2-204 (208)
73 2yc2_C IFT27, small RAB-relate 100.0 4.8E-33 1.7E-37 207.5 12.1 168 6-185 18-196 (208)
74 2f7s_A C25KG, RAS-related prot 100.0 1.2E-32 3.9E-37 207.2 13.8 167 4-182 21-200 (217)
75 2cjw_A GTP-binding protein GEM 100.0 1.7E-31 5.7E-36 197.6 19.0 165 6-182 4-173 (192)
76 3cph_A RAS-related protein SEC 100.0 3.1E-31 1E-35 198.6 19.6 163 6-181 18-182 (213)
77 3t1o_A Gliding protein MGLA; G 100.0 2.4E-32 8.2E-37 202.0 11.9 165 4-182 10-193 (198)
78 2wkq_A NPH1-1, RAS-related C3 100.0 9.1E-31 3.1E-35 208.5 21.8 177 6-182 153-331 (332)
79 3l0i_B RAS-related protein RAB 100.0 1.5E-33 5.3E-38 209.4 4.2 166 5-182 30-197 (199)
80 3gj0_A GTP-binding nuclear pro 100.0 6.5E-32 2.2E-36 203.8 11.6 167 4-184 11-178 (221)
81 4djt_A GTP-binding nuclear pro 100.0 2E-31 7E-36 200.5 13.1 168 5-184 8-178 (218)
82 3th5_A RAS-related C3 botulinu 100.0 1E-33 3.5E-38 211.1 0.0 174 6-179 28-203 (204)
83 4bas_A ADP-ribosylation factor 100.0 5.5E-31 1.9E-35 195.1 14.4 167 5-183 14-191 (199)
84 1f6b_A SAR1; gtpases, N-termin 100.0 1.7E-30 5.9E-35 193.0 15.9 156 6-178 23-196 (198)
85 1m2o_B GTP-binding protein SAR 100.0 6.7E-30 2.3E-34 188.6 18.1 156 6-178 21-189 (190)
86 1zd9_A ADP-ribosylation factor 100.0 2.6E-30 8.8E-35 190.4 14.7 162 5-182 19-186 (188)
87 1upt_A ARL1, ADP-ribosylation 100.0 5.1E-30 1.7E-34 185.4 15.1 159 6-182 5-170 (171)
88 1ksh_A ARF-like protein 2; sma 100.0 2.2E-29 7.4E-34 184.8 18.6 160 6-182 16-181 (186)
89 1zj6_A ADP-ribosylation factor 100.0 8.4E-30 2.9E-34 187.3 16.4 162 6-185 14-182 (187)
90 2h57_A ADP-ribosylation factor 100.0 1.3E-29 4.5E-34 186.8 16.8 161 5-181 18-187 (190)
91 1r8s_A ADP-ribosylation factor 100.0 7.4E-31 2.5E-35 188.7 9.3 155 9-181 1-162 (164)
92 2h17_A ADP-ribosylation factor 100.0 2E-29 6.7E-34 184.5 14.7 157 5-178 18-180 (181)
93 2f9l_A RAB11B, member RAS onco 100.0 2.9E-28 9.9E-33 181.0 21.0 164 6-181 3-168 (199)
94 2b6h_A ADP-ribosylation factor 100.0 4.3E-30 1.5E-34 189.9 10.8 160 5-181 26-191 (192)
95 2zej_A Dardarin, leucine-rich 100.0 3.5E-30 1.2E-34 189.1 10.2 165 8-183 2-180 (184)
96 2x77_A ADP-ribosylation factor 100.0 8.8E-30 3E-34 187.5 11.7 159 6-182 20-185 (189)
97 1fzq_A ADP-ribosylation factor 100.0 1.8E-29 6E-34 184.9 13.1 159 6-181 14-178 (181)
98 3llu_A RAS-related GTP-binding 100.0 1.1E-29 3.7E-34 188.3 12.0 167 4-179 16-195 (196)
99 1moz_A ARL1, ADP-ribosylation 100.0 2.1E-29 7.3E-34 184.2 13.0 159 6-181 16-180 (183)
100 1oix_A RAS-related protein RAB 100.0 7.9E-28 2.7E-32 177.6 21.5 162 6-179 27-190 (191)
101 2fh5_B SR-beta, signal recogni 100.0 5.6E-29 1.9E-33 186.6 13.5 164 5-178 4-213 (214)
102 3c5h_A Glucocorticoid receptor 100.0 1.1E-28 3.7E-33 190.2 10.9 163 5-180 16-254 (255)
103 2lkc_A Translation initiation 100.0 4.2E-27 1.4E-31 171.1 16.2 159 5-182 5-172 (178)
104 3r7w_B Gtpase2, GTP-binding pr 100.0 6.7E-29 2.3E-33 195.2 6.2 165 10-184 1-177 (331)
105 2wji_A Ferrous iron transport 100.0 5E-27 1.7E-31 169.3 15.4 153 7-179 2-163 (165)
106 3o47_A ADP-ribosylation factor 99.9 5.9E-28 2E-32 192.4 11.5 161 6-182 163-328 (329)
107 3r7w_A Gtpase1, GTP-binding pr 99.9 2.8E-27 9.5E-32 186.9 13.3 169 7-183 2-183 (307)
108 3lvq_E ARF-GAP with SH3 domain 99.9 9.9E-27 3.4E-31 195.0 17.0 164 6-185 320-488 (497)
109 2qu8_A Putative nucleolar GTP- 99.9 5.7E-27 2E-31 177.6 13.1 166 6-183 27-207 (228)
110 3dpu_A RAB family protein; roc 99.9 7.4E-27 2.5E-31 197.2 12.0 165 4-183 37-210 (535)
111 2cxx_A Probable GTP-binding pr 99.9 4.4E-27 1.5E-31 172.8 8.0 157 9-183 2-186 (190)
112 2wjg_A FEOB, ferrous iron tran 99.9 5.1E-26 1.7E-30 167.0 13.0 160 4-183 3-171 (188)
113 1svi_A GTP-binding protein YSX 99.9 2.1E-26 7.2E-31 170.0 10.8 159 5-180 20-194 (195)
114 2dyk_A GTP-binding protein; GT 99.9 3.4E-26 1.2E-30 163.6 10.8 150 9-179 2-160 (161)
115 2gj8_A MNME, tRNA modification 99.9 5E-26 1.7E-30 165.3 8.9 153 7-181 3-166 (172)
116 3iev_A GTP-binding protein ERA 99.9 4.4E-25 1.5E-29 174.3 14.9 165 4-182 6-183 (308)
117 3a1s_A Iron(II) transport prot 99.9 3.6E-25 1.2E-29 170.6 13.7 156 5-180 2-166 (258)
118 3pqc_A Probable GTP-binding pr 99.9 1.9E-25 6.5E-30 164.5 10.8 162 5-181 20-194 (195)
119 3b1v_A Ferrous iron uptake tra 99.9 3.6E-25 1.2E-29 171.7 11.4 154 7-180 2-163 (272)
120 1wf3_A GTP-binding protein; GT 99.9 1.5E-24 5.3E-29 170.5 11.5 161 1-180 1-172 (301)
121 3iby_A Ferrous iron transport 99.9 8.3E-25 2.8E-29 168.4 9.1 150 9-178 2-164 (256)
122 3k53_A Ferrous iron transport 99.9 7.6E-24 2.6E-28 164.4 13.0 157 7-182 2-167 (271)
123 3i8s_A Ferrous iron transport 99.9 1.2E-24 4.2E-29 169.1 7.8 156 7-182 2-170 (274)
124 1nrj_B SR-beta, signal recogni 99.9 2.6E-25 8.8E-30 167.1 3.7 149 5-167 9-170 (218)
125 1cip_A Protein (guanine nucleo 99.9 3.2E-23 1.1E-27 165.8 15.7 126 55-181 192-344 (353)
126 4dhe_A Probable GTP-binding pr 99.9 3.1E-24 1.1E-28 161.6 9.0 167 5-183 26-213 (223)
127 3gee_A MNME, tRNA modification 99.9 1.1E-23 3.7E-28 174.7 12.5 156 7-180 232-397 (476)
128 2xtz_A Guanine nucleotide-bind 99.9 1.4E-23 4.9E-28 167.8 12.2 127 54-181 181-345 (354)
129 3ohm_A Guanine nucleotide-bind 99.9 4.4E-23 1.5E-27 162.9 14.0 127 55-183 166-320 (327)
130 2hjg_A GTP-binding protein ENG 99.9 2.5E-23 8.4E-28 171.6 9.8 159 7-181 174-349 (436)
131 4dcu_A GTP-binding protein ENG 99.9 4.1E-23 1.4E-27 171.2 10.5 160 6-181 193-369 (456)
132 2e87_A Hypothetical protein PH 99.9 2.6E-22 8.7E-27 161.6 14.2 161 6-182 165-337 (357)
133 3qq5_A Small GTP-binding prote 99.9 9E-24 3.1E-28 172.6 5.5 157 6-182 32-197 (423)
134 1zcb_A G alpha I/13; GTP-bindi 99.9 7.8E-22 2.7E-26 158.3 16.2 125 55-181 200-353 (362)
135 1ega_A Protein (GTP-binding pr 99.9 2.3E-22 7.8E-27 158.3 12.2 164 1-181 1-175 (301)
136 1azs_C GS-alpha; complex (lyas 99.9 1.9E-21 6.4E-26 157.4 17.5 126 56-182 217-386 (402)
137 4fid_A G protein alpha subunit 99.9 2.3E-22 7.9E-27 159.3 11.0 128 54-181 159-328 (340)
138 1mky_A Probable GTP-binding pr 99.9 4.1E-22 1.4E-26 164.5 12.6 153 9-181 2-166 (439)
139 1lnz_A SPO0B-associated GTP-bi 99.9 7.3E-23 2.5E-27 163.2 7.8 158 10-184 160-333 (342)
140 1xzp_A Probable tRNA modificat 99.9 1.9E-22 6.6E-27 167.3 10.3 151 8-180 243-404 (482)
141 3sjy_A Translation initiation 99.9 2.9E-21 9.8E-26 157.8 16.0 168 4-182 4-193 (403)
142 2xtp_A GTPase IMAP family memb 99.9 7.4E-22 2.5E-26 152.3 10.9 163 6-181 20-208 (260)
143 1s0u_A EIF-2-gamma, translatio 99.9 1E-20 3.6E-25 154.7 15.9 165 4-182 4-199 (408)
144 2ywe_A GTP-binding protein LEP 99.9 2.6E-21 8.8E-26 163.9 12.5 163 5-183 3-186 (600)
145 3geh_A MNME, tRNA modification 99.9 1E-21 3.5E-26 162.3 9.8 154 7-183 223-386 (462)
146 3izy_P Translation initiation 99.9 4.2E-23 1.4E-27 172.7 0.8 162 6-181 2-168 (537)
147 2ged_A SR-beta, signal recogni 99.9 9.1E-22 3.1E-26 144.9 7.7 114 6-128 46-172 (193)
148 3cb4_D GTP-binding protein LEP 99.9 2.3E-21 7.8E-26 164.5 11.0 161 7-183 3-184 (599)
149 1mky_A Probable GTP-binding pr 99.9 2.3E-20 7.7E-25 154.1 16.2 159 7-181 179-355 (439)
150 2hjg_A GTP-binding protein ENG 99.8 3E-22 1E-26 165.2 3.5 153 9-181 4-165 (436)
151 1wb1_A Translation elongation 99.8 9.4E-21 3.2E-25 157.7 12.4 160 4-180 15-188 (482)
152 3lxx_A GTPase IMAP family memb 99.8 2.7E-20 9.2E-25 141.8 12.7 168 6-181 27-214 (239)
153 1kk1_A EIF2gamma; initiation o 99.8 5.4E-20 1.9E-24 150.6 15.3 165 4-182 6-201 (410)
154 2qtf_A Protein HFLX, GTP-bindi 99.8 7.9E-20 2.7E-24 147.0 15.8 161 9-182 179-355 (364)
155 1g7s_A Translation initiation 99.8 7.4E-20 2.5E-24 155.3 15.2 168 6-180 3-217 (594)
156 3lxw_A GTPase IMAP family memb 99.8 4.2E-20 1.4E-24 141.5 12.2 171 4-181 17-208 (247)
157 2qag_A Septin-2, protein NEDD5 99.8 1.4E-21 4.8E-26 157.3 4.0 161 7-182 36-234 (361)
158 3j2k_7 ERF3, eukaryotic polype 99.8 8.2E-20 2.8E-24 150.5 14.2 163 4-173 13-217 (439)
159 3p26_A Elongation factor 1 alp 99.8 2.2E-20 7.6E-25 155.8 9.9 158 6-170 31-227 (483)
160 3t5d_A Septin-7; GTP-binding p 99.8 1.6E-20 5.6E-25 145.9 7.1 160 7-179 7-202 (274)
161 4dcu_A GTP-binding protein ENG 99.8 4.5E-21 1.5E-25 159.0 3.8 156 6-181 21-185 (456)
162 2c78_A Elongation factor TU-A; 99.8 8E-20 2.7E-24 149.4 10.2 167 5-182 8-213 (405)
163 3tr5_A RF-3, peptide chain rel 99.8 4.3E-19 1.5E-23 148.9 14.6 115 6-127 11-149 (528)
164 1jny_A EF-1-alpha, elongation 99.8 2.8E-20 9.4E-25 153.3 7.0 163 4-173 2-205 (435)
165 1d2e_A Elongation factor TU (E 99.8 1.1E-19 3.7E-24 148.2 9.9 165 7-182 2-196 (397)
166 1zun_B Sulfate adenylate trans 99.8 7.4E-20 2.5E-24 150.8 8.1 158 5-171 21-214 (434)
167 1zo1_I IF2, translation initia 99.8 3.9E-21 1.4E-25 159.6 0.2 157 6-178 2-164 (501)
168 2aka_B Dynamin-1; fusion prote 99.8 8.7E-20 3E-24 143.2 5.9 160 6-178 24-250 (299)
169 1f60_A Elongation factor EEF1A 99.8 4.4E-19 1.5E-23 146.9 10.3 155 5-171 4-202 (458)
170 1r5b_A Eukaryotic peptide chai 99.8 6.1E-20 2.1E-24 152.4 4.8 159 5-172 40-243 (467)
171 3izq_1 HBS1P, elongation facto 99.8 7.8E-19 2.7E-23 149.8 11.6 158 5-171 164-362 (611)
172 2elf_A Protein translation elo 99.8 4.5E-19 1.5E-23 143.0 9.4 150 10-182 23-181 (370)
173 1u0l_A Probable GTPase ENGC; p 99.8 1E-19 3.5E-24 143.1 5.4 135 23-177 32-169 (301)
174 1pui_A ENGB, probable GTP-bind 99.8 7.3E-19 2.5E-23 130.9 9.5 161 6-181 24-199 (210)
175 3def_A T7I23.11 protein; chlor 99.8 1.6E-18 5.4E-23 133.8 11.2 119 6-127 34-166 (262)
176 3mca_A HBS1, elongation factor 99.8 2.4E-19 8.1E-24 152.5 6.2 156 5-169 174-371 (592)
177 3avx_A Elongation factor TS, e 99.8 5.7E-19 1.9E-23 156.9 8.1 168 4-182 292-487 (1289)
178 1h65_A Chloroplast outer envel 99.7 9.5E-18 3.2E-22 130.0 10.5 119 6-127 37-169 (270)
179 2qnr_A Septin-2, protein NEDD5 99.7 6.1E-19 2.1E-23 138.6 3.8 162 7-182 17-215 (301)
180 2j69_A Bacterial dynamin-like 99.7 9E-18 3.1E-22 145.3 11.2 172 7-181 68-325 (695)
181 2dy1_A Elongation factor G; tr 99.7 1.1E-17 3.8E-22 144.2 11.7 118 4-125 5-139 (665)
182 2h5e_A Peptide chain release f 99.7 2.1E-17 7.3E-22 138.7 13.2 118 6-127 11-149 (529)
183 1dar_A EF-G, elongation factor 99.7 3.3E-17 1.1E-21 141.7 14.2 116 5-127 9-144 (691)
184 1udx_A The GTP-binding protein 99.7 3.9E-17 1.3E-21 133.1 13.0 158 10-184 159-328 (416)
185 1jwy_B Dynamin A GTPase domain 99.7 4.8E-18 1.6E-22 134.3 4.6 164 6-182 22-263 (315)
186 2qag_C Septin-7; cell cycle, c 99.7 3.4E-17 1.2E-21 133.5 9.6 159 8-180 31-226 (418)
187 2rdo_7 EF-G, elongation factor 99.7 4.3E-16 1.5E-20 135.0 16.4 118 5-127 7-149 (704)
188 3t34_A Dynamin-related protein 99.7 6.6E-18 2.3E-22 136.0 4.3 154 7-174 33-254 (360)
189 2xex_A Elongation factor G; GT 99.7 4.1E-16 1.4E-20 134.9 15.6 116 5-127 7-142 (693)
190 2wsm_A Hydrogenase expression/ 99.7 1.4E-16 4.7E-21 119.6 9.9 155 7-182 29-215 (221)
191 1wxq_A GTP-binding protein; st 99.7 1.9E-16 6.5E-21 128.7 10.4 84 9-92 1-114 (397)
192 2hf9_A Probable hydrogenase ni 99.7 1.4E-17 4.9E-22 125.4 2.3 153 7-180 37-223 (226)
193 2x2e_A Dynamin-1; nitration, h 99.6 7.2E-17 2.5E-21 129.6 1.4 158 7-177 30-254 (353)
194 1jal_A YCHF protein; nucleotid 99.6 2.3E-14 7.9E-19 114.5 15.3 82 9-91 3-108 (363)
195 3p32_A Probable GTPase RV1496/ 99.6 6.8E-16 2.3E-20 124.0 6.2 105 55-181 171-284 (355)
196 1n0u_A EF-2, elongation factor 99.6 3.4E-15 1.2E-19 131.7 9.5 118 5-126 16-164 (842)
197 2qpt_A EH domain-containing pr 99.6 3E-15 1E-19 126.3 7.6 119 6-127 63-233 (550)
198 1yrb_A ATP(GTP)binding protein 99.6 4.3E-15 1.5E-19 114.2 6.6 120 56-180 109-256 (262)
199 2dby_A GTP-binding protein; GD 99.5 2.1E-13 7.1E-18 109.6 14.4 82 9-91 2-111 (368)
200 2www_A Methylmalonic aciduria 99.5 3.3E-14 1.1E-18 113.9 9.1 103 56-180 167-278 (349)
201 3vqt_A RF-3, peptide chain rel 99.5 2.1E-13 7.1E-18 115.1 13.3 115 7-127 30-167 (548)
202 2p67_A LAO/AO transport system 99.5 1.4E-14 4.9E-19 115.7 4.2 105 55-180 148-260 (341)
203 2yv5_A YJEQ protein; hydrolase 99.5 1.2E-12 4.2E-17 102.7 13.6 97 66-176 66-164 (302)
204 3l82_B F-box only protein 4; T 99.4 9.4E-14 3.2E-18 101.8 4.8 108 62-182 108-224 (227)
205 3zvr_A Dynamin-1; hydrolase, D 99.4 2.2E-13 7.7E-18 117.8 6.5 156 7-178 50-275 (772)
206 4a9a_A Ribosome-interacting GT 99.4 8.3E-12 2.8E-16 100.3 13.9 142 8-153 72-221 (376)
207 4fn5_A EF-G 1, elongation fact 99.4 5.8E-12 2E-16 109.5 14.0 118 6-127 11-152 (709)
208 3j25_A Tetracycline resistance 99.3 3E-13 1E-17 116.1 3.1 116 8-127 2-134 (638)
209 3l2o_B F-box only protein 4; s 99.3 3.5E-12 1.2E-16 97.9 6.0 108 62-182 193-309 (312)
210 2qm8_A GTPase/ATPase; G protei 99.3 4.2E-12 1.5E-16 101.1 6.0 105 55-180 147-260 (337)
211 2ohf_A Protein OLA1, GTP-bindi 99.2 5.2E-12 1.8E-16 101.9 4.4 88 7-94 21-131 (396)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.2E-09 4E-14 88.4 13.4 85 7-91 19-127 (392)
213 3h2y_A GTPase family protein; 99.0 3.1E-10 1.1E-14 91.3 6.7 99 64-179 54-158 (368)
214 3ec1_A YQEH GTPase; atnos1, at 98.9 9.6E-10 3.3E-14 88.6 5.2 102 61-179 53-160 (369)
215 2j37_W Signal recognition part 98.8 4.1E-09 1.4E-13 87.8 4.5 152 6-178 99-310 (504)
216 2qag_B Septin-6, protein NEDD5 98.7 3E-07 1E-11 74.9 13.4 114 8-127 42-191 (427)
217 3sop_A Neuronal-specific septi 98.7 1.6E-07 5.4E-12 72.4 10.7 116 8-127 2-155 (270)
218 1puj_A YLQF, conserved hypothe 98.6 2.6E-08 9E-13 77.2 4.4 101 60-180 3-105 (282)
219 3ec1_A YQEH GTPase; atnos1, at 98.6 5.4E-09 1.8E-13 84.2 0.4 139 9-167 163-317 (369)
220 1tq4_A IIGP1, interferon-induc 98.6 6E-07 2E-11 73.1 12.3 166 8-181 69-253 (413)
221 3h2y_A GTPase family protein; 98.5 5.9E-09 2E-13 83.9 -1.9 113 9-128 161-289 (368)
222 1puj_A YLQF, conserved hypothe 98.4 3.2E-07 1.1E-11 71.1 5.3 58 6-67 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.3 2.1E-07 7.2E-12 71.4 3.3 56 9-68 100-156 (262)
224 3dm5_A SRP54, signal recogniti 98.3 1.1E-06 3.9E-11 71.9 6.2 140 7-169 99-279 (443)
225 3cnl_A YLQF, putative uncharac 98.2 4.8E-07 1.6E-11 69.4 2.7 93 63-177 4-97 (262)
226 1t9h_A YLOQ, probable GTPase E 98.1 2E-06 7E-11 67.2 4.8 90 72-174 79-170 (307)
227 1f5n_A Interferon-induced guan 98.1 1.9E-06 6.4E-11 73.1 4.9 64 6-69 36-104 (592)
228 2v3c_C SRP54, signal recogniti 98.0 4.3E-06 1.5E-10 68.5 4.4 65 55-126 180-252 (432)
229 3kl4_A SRP54, signal recogniti 97.9 1.1E-05 3.9E-10 65.9 5.7 91 55-168 179-277 (433)
230 3szr_A Interferon-induced GTP- 97.8 1.3E-05 4.5E-10 68.5 4.7 24 9-32 46-69 (608)
231 1j8m_F SRP54, signal recogniti 97.8 1.7E-05 6E-10 61.8 4.6 92 55-170 180-280 (297)
232 2rcn_A Probable GTPase ENGC; Y 97.7 0.00011 3.8E-09 58.5 7.9 86 76-175 127-213 (358)
233 1bif_A 6-phosphofructo-2-kinas 97.5 1.7E-06 5.7E-11 71.8 -5.7 101 6-109 37-148 (469)
234 1knq_A Gluconate kinase; ALFA/ 97.4 0.00011 3.7E-09 52.3 4.0 30 1-30 1-30 (175)
235 3q5d_A Atlastin-1; G protein, 97.4 0.00018 6.1E-09 59.1 4.7 25 6-30 65-89 (447)
236 1ye8_A Protein THEP1, hypothet 97.3 0.00012 4.1E-09 52.6 3.2 22 10-31 2-23 (178)
237 1y63_A LMAJ004144AAA protein; 97.3 0.00015 5.2E-09 52.2 3.6 31 1-31 3-33 (184)
238 1kgd_A CASK, peripheral plasma 97.3 0.00012 4.1E-09 52.6 3.0 22 10-31 7-28 (180)
239 1lvg_A Guanylate kinase, GMP k 97.3 0.00015 5.3E-09 52.9 3.0 21 10-30 6-26 (198)
240 2wwf_A Thymidilate kinase, put 97.2 0.00021 7.1E-09 52.4 3.6 30 1-30 3-32 (212)
241 1zp6_A Hypothetical protein AT 97.2 0.00026 8.8E-09 51.0 3.4 23 9-31 10-32 (191)
242 3a00_A Guanylate kinase, GMP k 97.2 0.00022 7.5E-09 51.4 2.9 20 11-30 4-23 (186)
243 3tr0_A Guanylate kinase, GMP k 97.1 0.00023 8E-09 51.8 3.1 22 10-31 9-30 (205)
244 1ex7_A Guanylate kinase; subst 97.1 0.00027 9.1E-09 51.1 3.2 21 11-31 4-24 (186)
245 3asz_A Uridine kinase; cytidin 97.1 0.00025 8.7E-09 52.0 3.1 25 6-30 4-28 (211)
246 1t9h_A YLOQ, probable GTPase E 97.1 0.00016 5.6E-09 56.4 2.0 23 10-32 175-197 (307)
247 1s96_A Guanylate kinase, GMP k 97.1 0.00027 9.3E-09 52.5 3.1 23 9-31 17-39 (219)
248 4gp7_A Metallophosphoesterase; 97.1 0.00025 8.5E-09 50.5 2.7 20 10-29 11-30 (171)
249 1uf9_A TT1252 protein; P-loop, 97.1 0.00034 1.2E-08 50.8 3.4 31 1-31 1-31 (203)
250 3tau_A Guanylate kinase, GMP k 97.1 0.00033 1.1E-08 51.4 3.2 23 9-31 9-31 (208)
251 3ney_A 55 kDa erythrocyte memb 97.1 0.00042 1.4E-08 50.6 3.6 23 9-31 20-42 (197)
252 1znw_A Guanylate kinase, GMP k 97.1 0.00031 1.1E-08 51.5 3.0 22 10-31 22-43 (207)
253 1z6g_A Guanylate kinase; struc 97.0 0.00032 1.1E-08 52.0 3.0 22 10-31 25-46 (218)
254 2yv5_A YJEQ protein; hydrolase 97.0 0.0011 3.7E-08 51.7 6.1 20 10-29 167-186 (302)
255 2j41_A Guanylate kinase; GMP, 97.0 0.0004 1.4E-08 50.6 3.3 25 8-32 6-30 (207)
256 2qor_A Guanylate kinase; phosp 97.0 0.00041 1.4E-08 50.7 3.2 24 8-31 12-35 (204)
257 3kb2_A SPBC2 prophage-derived 97.0 0.00042 1.4E-08 48.9 3.1 22 10-31 3-24 (173)
258 3lw7_A Adenylate kinase relate 97.0 0.00043 1.5E-08 48.8 3.1 19 10-28 3-21 (179)
259 1qf9_A UMP/CMP kinase, protein 97.0 0.00057 2E-08 49.0 3.7 23 8-30 6-28 (194)
260 1kag_A SKI, shikimate kinase I 97.0 0.00046 1.6E-08 48.8 3.1 23 9-31 5-27 (173)
261 4eun_A Thermoresistant glucoki 97.0 0.00049 1.7E-08 50.1 3.3 23 8-30 29-51 (200)
262 1via_A Shikimate kinase; struc 97.0 0.00048 1.7E-08 48.9 3.1 21 10-30 6-26 (175)
263 3gmt_A Adenylate kinase; ssgci 96.9 0.00053 1.8E-08 51.2 3.4 30 1-30 1-30 (230)
264 1aky_A Adenylate kinase; ATP:A 96.9 0.00053 1.8E-08 50.7 3.4 25 6-30 2-26 (220)
265 1ly1_A Polynucleotide kinase; 96.9 0.00052 1.8E-08 48.7 3.2 22 9-30 3-24 (181)
266 3vaa_A Shikimate kinase, SK; s 96.9 0.00059 2E-08 49.7 3.4 23 8-30 25-47 (199)
267 3fb4_A Adenylate kinase; psych 96.9 0.00055 1.9E-08 50.4 3.3 22 9-30 1-22 (216)
268 3dl0_A Adenylate kinase; phosp 96.9 0.00058 2E-08 50.3 3.3 22 9-30 1-22 (216)
269 3c8u_A Fructokinase; YP_612366 96.9 0.00057 2E-08 50.1 3.2 26 6-31 20-45 (208)
270 2bdt_A BH3686; alpha-beta prot 96.9 0.00055 1.9E-08 49.2 3.1 21 10-30 4-24 (189)
271 2bbw_A Adenylate kinase 4, AK4 96.9 0.0006 2E-08 51.4 3.4 22 8-29 27-48 (246)
272 3tlx_A Adenylate kinase 2; str 96.9 0.00077 2.6E-08 50.8 3.9 25 6-30 27-51 (243)
273 1htw_A HI0065; nucleotide-bind 96.9 0.00059 2E-08 48.0 3.0 23 10-32 35-57 (158)
274 3tif_A Uncharacterized ABC tra 96.9 0.00055 1.9E-08 51.4 2.9 22 10-31 33-54 (235)
275 2rcn_A Probable GTPase ENGC; Y 96.9 0.00065 2.2E-08 54.1 3.5 23 10-32 217-239 (358)
276 1nn5_A Similar to deoxythymidy 96.8 0.00063 2.2E-08 49.8 3.1 25 6-30 7-31 (215)
277 3sr0_A Adenylate kinase; phosp 96.8 0.00072 2.5E-08 49.7 3.3 22 9-30 1-22 (206)
278 3t61_A Gluconokinase; PSI-biol 96.8 0.00068 2.3E-08 49.3 3.2 23 9-31 19-41 (202)
279 1qhx_A CPT, protein (chloramph 96.8 0.00071 2.4E-08 48.0 3.2 22 10-31 5-26 (178)
280 1cke_A CK, MSSA, protein (cyti 96.8 0.00084 2.9E-08 49.7 3.6 22 9-30 6-27 (227)
281 2cdn_A Adenylate kinase; phosp 96.8 0.00093 3.2E-08 48.6 3.7 25 6-30 18-42 (201)
282 3cm0_A Adenylate kinase; ATP-b 96.8 0.001 3.5E-08 47.6 3.9 23 8-30 4-26 (186)
283 1zd8_A GTP:AMP phosphotransfer 96.8 0.0007 2.4E-08 50.3 3.0 24 7-30 6-29 (227)
284 1nks_A Adenylate kinase; therm 96.8 0.0007 2.4E-08 48.6 2.8 21 10-30 3-23 (194)
285 2jaq_A Deoxyguanosine kinase; 96.8 0.00087 3E-08 48.6 3.4 21 10-30 2-22 (205)
286 2pcj_A ABC transporter, lipopr 96.8 0.00064 2.2E-08 50.6 2.7 22 10-31 32-53 (224)
287 2onk_A Molybdate/tungstate ABC 96.8 0.00081 2.8E-08 50.6 3.2 22 10-31 26-47 (240)
288 1tev_A UMP-CMP kinase; ploop, 96.8 0.001 3.4E-08 47.8 3.6 23 8-30 3-25 (196)
289 2i3b_A HCR-ntpase, human cance 96.8 0.00076 2.6E-08 48.9 2.9 21 10-30 3-23 (189)
290 1ukz_A Uridylate kinase; trans 96.8 0.0012 4.2E-08 47.9 4.1 25 6-30 13-37 (203)
291 2plr_A DTMP kinase, probable t 96.7 0.0011 3.8E-08 48.3 3.7 23 8-30 4-26 (213)
292 1kht_A Adenylate kinase; phosp 96.7 0.00091 3.1E-08 47.9 3.2 22 9-30 4-25 (192)
293 3iij_A Coilin-interacting nucl 96.7 0.001 3.4E-08 47.4 3.4 24 7-30 10-33 (180)
294 3ec2_A DNA replication protein 96.7 0.0007 2.4E-08 48.3 2.5 23 9-31 39-61 (180)
295 1sgw_A Putative ABC transporte 96.7 0.00085 2.9E-08 49.6 3.0 22 10-31 37-58 (214)
296 2rhm_A Putative kinase; P-loop 96.7 0.001 3.5E-08 47.8 3.3 23 8-30 5-27 (193)
297 1b0u_A Histidine permease; ABC 96.7 0.00085 2.9E-08 51.2 3.0 22 10-31 34-55 (262)
298 3gfo_A Cobalt import ATP-bindi 96.7 0.00084 2.9E-08 51.6 3.0 22 10-31 36-57 (275)
299 1jjv_A Dephospho-COA kinase; P 96.7 0.0012 4E-08 48.2 3.6 22 9-30 3-24 (206)
300 3trf_A Shikimate kinase, SK; a 96.7 0.0011 3.6E-08 47.5 3.3 22 9-30 6-27 (185)
301 2cbz_A Multidrug resistance-as 96.7 0.00087 3E-08 50.3 2.9 22 10-31 33-54 (237)
302 1e4v_A Adenylate kinase; trans 96.7 0.00087 3E-08 49.3 2.9 21 10-30 2-22 (214)
303 2if2_A Dephospho-COA kinase; a 96.7 0.00092 3.1E-08 48.7 3.0 22 9-30 2-23 (204)
304 2v54_A DTMP kinase, thymidylat 96.7 0.0013 4.3E-08 47.8 3.7 24 8-31 4-27 (204)
305 4g1u_C Hemin import ATP-bindin 96.7 0.00093 3.2E-08 51.1 3.1 22 10-31 39-60 (266)
306 1g6h_A High-affinity branched- 96.7 0.00091 3.1E-08 50.9 2.9 22 10-31 35-56 (257)
307 1np6_A Molybdopterin-guanine d 96.7 0.0012 4E-08 47.2 3.2 23 9-31 7-29 (174)
308 3uie_A Adenylyl-sulfate kinase 96.7 0.001 3.4E-08 48.4 3.0 25 7-31 24-48 (200)
309 2eyu_A Twitching motility prot 96.7 0.00099 3.4E-08 50.8 3.0 21 10-30 27-47 (261)
310 2olj_A Amino acid ABC transpor 96.6 0.001 3.5E-08 50.8 3.0 22 10-31 52-73 (263)
311 3lnc_A Guanylate kinase, GMP k 96.6 0.00064 2.2E-08 50.6 1.9 20 10-29 29-48 (231)
312 2ehv_A Hypothetical protein PH 96.6 0.0011 3.7E-08 49.7 3.2 20 10-29 32-51 (251)
313 2pze_A Cystic fibrosis transme 96.6 0.001 3.5E-08 49.7 3.0 22 10-31 36-57 (229)
314 1mv5_A LMRA, multidrug resista 96.6 0.0011 3.9E-08 49.9 3.2 22 10-31 30-51 (243)
315 2ff7_A Alpha-hemolysin translo 96.6 0.0011 3.8E-08 50.1 3.2 22 10-31 37-58 (247)
316 1ji0_A ABC transporter; ATP bi 96.6 0.001 3.5E-08 50.0 2.9 22 10-31 34-55 (240)
317 2d2e_A SUFC protein; ABC-ATPas 96.6 0.0011 3.8E-08 50.1 3.2 22 10-31 31-52 (250)
318 1vpl_A ABC transporter, ATP-bi 96.6 0.0011 3.6E-08 50.5 3.0 22 10-31 43-64 (256)
319 2qi9_C Vitamin B12 import ATP- 96.6 0.0011 3.7E-08 50.2 3.0 22 10-31 28-49 (249)
320 2v9p_A Replication protein E1; 96.6 0.0012 4E-08 51.5 3.1 22 10-31 128-149 (305)
321 2zu0_C Probable ATP-dependent 96.6 0.0012 4.2E-08 50.4 3.2 22 10-31 48-69 (267)
322 3b85_A Phosphate starvation-in 96.6 0.00084 2.9E-08 49.4 2.2 22 10-31 24-45 (208)
323 1u0l_A Probable GTPase ENGC; p 96.6 0.001 3.5E-08 51.8 2.8 23 10-32 171-193 (301)
324 1zak_A Adenylate kinase; ATP:A 96.6 0.001 3.4E-08 49.2 2.6 24 7-30 4-27 (222)
325 2xb4_A Adenylate kinase; ATP-b 96.6 0.0014 4.9E-08 48.6 3.4 21 10-30 2-22 (223)
326 2c95_A Adenylate kinase 1; tra 96.6 0.0013 4.3E-08 47.4 3.0 24 7-30 8-31 (196)
327 2pt5_A Shikimate kinase, SK; a 96.6 0.0015 5.3E-08 45.8 3.4 21 10-30 2-22 (168)
328 2ghi_A Transport protein; mult 96.6 0.0013 4.4E-08 50.1 3.2 22 10-31 48-69 (260)
329 2ixe_A Antigen peptide transpo 96.6 0.0012 4.1E-08 50.6 2.9 22 10-31 47-68 (271)
330 3be4_A Adenylate kinase; malar 96.6 0.0013 4.3E-08 48.6 3.0 24 7-30 4-27 (217)
331 2ihy_A ABC transporter, ATP-bi 96.6 0.0014 4.7E-08 50.5 3.2 22 10-31 49-70 (279)
332 1gvn_B Zeta; postsegregational 96.6 0.0016 5.6E-08 50.3 3.6 25 6-30 31-55 (287)
333 2nq2_C Hypothetical ABC transp 96.5 0.0013 4.3E-08 50.0 2.9 22 10-31 33-54 (253)
334 3umf_A Adenylate kinase; rossm 96.5 0.0019 6.5E-08 47.8 3.8 22 9-30 29-51 (217)
335 2jeo_A Uridine-cytidine kinase 96.5 0.0017 5.7E-08 48.9 3.5 24 7-30 24-47 (245)
336 2yz2_A Putative ABC transporte 96.5 0.0014 4.7E-08 50.1 2.9 22 10-31 35-56 (266)
337 2z0h_A DTMP kinase, thymidylat 96.5 0.0016 5.5E-08 46.9 3.1 22 10-31 2-23 (197)
338 2qt1_A Nicotinamide riboside k 96.5 0.0021 7.2E-08 46.9 3.7 25 7-31 20-44 (207)
339 1xjc_A MOBB protein homolog; s 96.5 0.0019 6.5E-08 45.9 3.3 24 8-31 4-27 (169)
340 3aez_A Pantothenate kinase; tr 96.5 0.0021 7.3E-08 50.3 3.9 25 6-30 88-112 (312)
341 4a74_A DNA repair and recombin 96.5 0.0013 4.5E-08 48.6 2.6 22 10-31 27-48 (231)
342 1uj2_A Uridine-cytidine kinase 96.5 0.0019 6.7E-08 48.7 3.6 26 5-30 19-44 (252)
343 2pjz_A Hypothetical protein ST 96.5 0.0018 6E-08 49.5 3.2 22 10-31 32-53 (263)
344 1ak2_A Adenylate kinase isoenz 96.5 0.002 6.8E-08 48.0 3.5 24 7-30 15-38 (233)
345 2pbr_A DTMP kinase, thymidylat 96.4 0.002 6.8E-08 46.2 3.3 21 10-30 2-22 (195)
346 1odf_A YGR205W, hypothetical 3 96.4 0.0024 8.3E-08 49.4 4.0 26 5-30 28-53 (290)
347 3tqc_A Pantothenate kinase; bi 96.4 0.0023 7.8E-08 50.3 3.8 25 6-30 90-114 (321)
348 2bwj_A Adenylate kinase 5; pho 96.4 0.0014 4.7E-08 47.3 2.4 23 8-30 12-34 (199)
349 1lw7_A Transcriptional regulat 96.4 0.0013 4.6E-08 52.5 2.6 24 8-31 170-193 (365)
350 1vht_A Dephospho-COA kinase; s 96.4 0.0024 8.1E-08 47.0 3.7 23 8-30 4-26 (218)
351 2vli_A Antibiotic resistance p 96.4 0.0014 4.7E-08 46.7 2.3 23 8-30 5-27 (183)
352 2kjq_A DNAA-related protein; s 96.4 0.0012 4.2E-08 45.8 2.0 22 10-31 38-59 (149)
353 1jbk_A CLPB protein; beta barr 96.4 0.0021 7.1E-08 45.7 3.2 23 9-31 44-66 (195)
354 2yvu_A Probable adenylyl-sulfa 96.4 0.0029 1E-07 45.3 4.0 24 7-30 12-35 (186)
355 2x8a_A Nuclear valosin-contain 96.4 0.0018 6.3E-08 49.6 3.0 21 11-31 47-67 (274)
356 1e6c_A Shikimate kinase; phosp 96.4 0.0022 7.5E-08 45.2 3.2 21 10-30 4-24 (173)
357 1rz3_A Hypothetical protein rb 96.4 0.0026 9E-08 46.3 3.7 25 6-30 20-44 (201)
358 2f1r_A Molybdopterin-guanine d 96.4 0.00079 2.7E-08 48.0 0.8 22 10-31 4-25 (171)
359 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0026 8.8E-08 48.4 3.6 23 8-30 4-26 (260)
360 1ixz_A ATP-dependent metallopr 96.3 0.002 6.9E-08 48.6 3.0 21 11-31 52-72 (254)
361 2ze6_A Isopentenyl transferase 96.3 0.0022 7.5E-08 48.6 3.2 21 10-30 3-23 (253)
362 3fvq_A Fe(3+) IONS import ATP- 96.3 0.0018 6.2E-08 51.6 2.8 22 11-32 33-54 (359)
363 2p5t_B PEZT; postsegregational 96.3 0.0018 6E-08 49.0 2.6 25 6-30 30-54 (253)
364 1z47_A CYSA, putative ABC-tran 96.3 0.0022 7.4E-08 51.1 3.2 22 10-31 43-64 (355)
365 2iyv_A Shikimate kinase, SK; t 96.3 0.0024 8.1E-08 45.6 3.1 21 10-30 4-24 (184)
366 4e22_A Cytidylate kinase; P-lo 96.3 0.0028 9.7E-08 47.9 3.7 21 9-29 28-48 (252)
367 1rj9_A FTSY, signal recognitio 96.3 0.0021 7.3E-08 50.1 3.0 21 9-29 103-123 (304)
368 2yyz_A Sugar ABC transporter, 96.3 0.0023 7.8E-08 51.1 3.2 22 10-31 31-52 (359)
369 3rlf_A Maltose/maltodextrin im 96.3 0.0023 8E-08 51.4 3.2 21 11-31 32-52 (381)
370 3nh6_A ATP-binding cassette SU 96.3 0.0014 4.7E-08 51.2 1.8 22 10-31 82-103 (306)
371 2f6r_A COA synthase, bifunctio 96.3 0.0031 1E-07 48.6 3.8 25 6-30 73-97 (281)
372 1gtv_A TMK, thymidylate kinase 96.3 0.00078 2.7E-08 49.3 0.4 21 10-30 2-22 (214)
373 3tui_C Methionine import ATP-b 96.3 0.0024 8.2E-08 51.0 3.2 21 11-31 57-77 (366)
374 2it1_A 362AA long hypothetical 96.3 0.0024 8.3E-08 51.0 3.2 22 10-31 31-52 (362)
375 2grj_A Dephospho-COA kinase; T 96.3 0.0036 1.2E-07 45.4 3.9 27 5-31 9-35 (192)
376 3jvv_A Twitching mobility prot 96.3 0.0023 8E-08 51.0 3.0 22 10-31 125-146 (356)
377 3b9q_A Chloroplast SRP recepto 96.3 0.0025 8.4E-08 49.7 3.1 22 9-30 101-122 (302)
378 2bbs_A Cystic fibrosis transme 96.2 0.0022 7.7E-08 49.6 2.8 22 10-31 66-87 (290)
379 1v43_A Sugar-binding transport 96.2 0.0026 8.9E-08 51.0 3.2 22 10-31 39-60 (372)
380 1g29_1 MALK, maltose transport 96.2 0.0026 8.9E-08 51.0 3.2 21 11-31 32-52 (372)
381 3r20_A Cytidylate kinase; stru 96.2 0.0029 1E-07 47.3 3.2 24 7-30 8-31 (233)
382 3e70_C DPA, signal recognition 96.2 0.0026 8.9E-08 50.1 3.0 24 7-30 128-151 (328)
383 2pez_A Bifunctional 3'-phospho 96.2 0.0029 9.8E-08 45.0 3.0 23 8-30 5-27 (179)
384 4eaq_A DTMP kinase, thymidylat 96.2 0.0042 1.5E-07 46.3 4.0 25 7-31 25-49 (229)
385 2vp4_A Deoxynucleoside kinase; 96.2 0.0019 6.7E-08 48.0 2.2 25 7-31 19-43 (230)
386 1zuh_A Shikimate kinase; alpha 96.2 0.0036 1.2E-07 44.0 3.4 22 9-30 8-29 (168)
387 1in4_A RUVB, holliday junction 96.2 0.0027 9.4E-08 50.0 3.0 22 10-31 53-74 (334)
388 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0032 1.1E-07 46.4 3.1 22 10-31 25-46 (235)
389 2gza_A Type IV secretion syste 96.1 0.0027 9.1E-08 50.8 2.8 22 10-31 177-198 (361)
390 1iy2_A ATP-dependent metallopr 96.1 0.003 1E-07 48.3 3.0 21 11-31 76-96 (278)
391 2ewv_A Twitching motility prot 96.1 0.0029 9.8E-08 50.8 2.9 22 10-31 138-159 (372)
392 1sq5_A Pantothenate kinase; P- 96.1 0.0035 1.2E-07 48.9 3.3 24 7-30 79-102 (308)
393 3kta_A Chromosome segregation 96.1 0.0033 1.1E-07 44.8 2.8 21 10-30 28-48 (182)
394 1lv7_A FTSH; alpha/beta domain 96.1 0.0035 1.2E-07 47.3 3.1 23 9-31 46-68 (257)
395 2p65_A Hypothetical protein PF 96.1 0.0027 9.3E-08 44.9 2.3 23 9-31 44-66 (187)
396 1m7g_A Adenylylsulfate kinase; 96.1 0.0037 1.3E-07 45.8 3.1 23 8-30 25-47 (211)
397 2pt7_A CAG-ALFA; ATPase, prote 96.0 0.0027 9.2E-08 50.1 2.4 22 10-31 173-194 (330)
398 3d31_A Sulfate/molybdate ABC t 96.0 0.0022 7.5E-08 50.9 1.9 22 10-31 28-49 (348)
399 3bos_A Putative DNA replicatio 96.0 0.0039 1.3E-07 46.1 3.1 24 8-31 52-75 (242)
400 2w58_A DNAI, primosome compone 96.0 0.0038 1.3E-07 45.2 3.0 23 9-31 55-77 (202)
401 3nwj_A ATSK2; P loop, shikimat 96.0 0.0036 1.2E-07 47.4 2.8 22 9-30 49-70 (250)
402 3gd7_A Fusion complex of cysti 96.0 0.0034 1.2E-07 50.6 2.8 21 10-30 49-69 (390)
403 2og2_A Putative signal recogni 96.0 0.004 1.4E-07 49.7 3.1 23 8-30 157-179 (359)
404 1p9r_A General secretion pathw 96.0 0.0038 1.3E-07 50.8 3.0 22 10-31 169-190 (418)
405 1ltq_A Polynucleotide kinase; 95.9 0.0045 1.6E-07 47.8 3.2 22 9-30 3-24 (301)
406 3qf7_A RAD50; ABC-ATPase, ATPa 95.9 0.022 7.6E-07 45.5 7.1 19 11-29 26-44 (365)
407 2cvh_A DNA repair and recombin 95.9 0.0049 1.7E-07 45.1 3.1 21 10-30 22-42 (220)
408 3n70_A Transport activator; si 95.9 0.0051 1.7E-07 42.2 3.0 25 8-32 24-48 (145)
409 1oxx_K GLCV, glucose, ABC tran 95.9 0.0022 7.4E-08 51.1 1.1 22 10-31 33-54 (353)
410 1n0w_A DNA repair protein RAD5 95.9 0.0053 1.8E-07 45.6 3.2 22 10-31 26-47 (243)
411 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.0037 1.3E-07 51.6 2.4 22 10-31 140-161 (460)
412 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0061 2.1E-07 42.2 3.2 19 11-29 26-44 (149)
413 2oap_1 GSPE-2, type II secreti 95.8 0.0043 1.5E-07 51.9 2.8 23 10-32 262-284 (511)
414 3d3q_A TRNA delta(2)-isopenten 95.8 0.0067 2.3E-07 47.9 3.7 23 9-31 8-30 (340)
415 2obl_A ESCN; ATPase, hydrolase 95.8 0.0048 1.7E-07 49.0 2.9 23 10-32 73-95 (347)
416 1cr0_A DNA primase/helicase; R 95.8 0.0044 1.5E-07 47.8 2.6 22 10-31 37-58 (296)
417 1njg_A DNA polymerase III subu 95.8 0.0059 2E-07 44.9 3.2 21 10-30 47-67 (250)
418 2chg_A Replication factor C sm 95.8 0.0059 2E-07 44.3 3.1 21 11-31 41-61 (226)
419 3b9p_A CG5977-PA, isoform A; A 95.7 0.0057 2E-07 47.1 3.0 24 8-31 54-77 (297)
420 3h4m_A Proteasome-activating n 95.7 0.0056 1.9E-07 46.8 2.9 24 8-31 51-74 (285)
421 1q3t_A Cytidylate kinase; nucl 95.7 0.0075 2.6E-07 44.9 3.4 25 6-30 14-38 (236)
422 1a7j_A Phosphoribulokinase; tr 95.7 0.0036 1.2E-07 48.5 1.7 24 7-30 4-27 (290)
423 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.0064 2.2E-07 45.8 3.1 23 9-31 40-62 (262)
424 1p5z_B DCK, deoxycytidine kina 95.7 0.0043 1.5E-07 47.1 2.1 26 6-31 22-47 (263)
425 2yhs_A FTSY, cell division pro 95.7 0.0091 3.1E-07 49.5 4.1 23 8-30 293-315 (503)
426 1svm_A Large T antigen; AAA+ f 95.6 0.0066 2.3E-07 48.7 3.0 22 9-30 170-191 (377)
427 1l8q_A Chromosomal replication 95.6 0.0066 2.3E-07 47.5 2.9 23 9-31 38-60 (324)
428 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0078 2.7E-07 50.7 3.4 22 10-31 49-70 (538)
429 3t15_A Ribulose bisphosphate c 95.6 0.0078 2.7E-07 46.5 3.2 25 7-31 35-59 (293)
430 1nij_A Hypothetical protein YJ 95.6 0.0044 1.5E-07 48.6 1.8 24 8-31 4-27 (318)
431 3cf0_A Transitional endoplasmi 95.6 0.007 2.4E-07 47.0 2.9 23 9-31 50-72 (301)
432 3crm_A TRNA delta(2)-isopenten 95.6 0.0094 3.2E-07 46.8 3.6 23 9-31 6-28 (323)
433 2dpy_A FLII, flagellum-specifi 95.5 0.007 2.4E-07 49.6 2.9 23 10-32 159-181 (438)
434 3u61_B DNA polymerase accessor 95.5 0.019 6.6E-07 44.7 5.3 43 81-124 105-148 (324)
435 3euj_A Chromosome partition pr 95.5 0.0077 2.6E-07 49.9 3.0 21 10-30 31-51 (483)
436 2qmh_A HPR kinase/phosphorylas 95.5 0.0085 2.9E-07 43.6 2.9 24 9-32 35-58 (205)
437 1d2n_A N-ethylmaleimide-sensit 95.5 0.012 4.3E-07 44.6 4.0 26 6-31 62-87 (272)
438 3ake_A Cytidylate kinase; CMP 95.5 0.0092 3.1E-07 43.2 3.1 21 10-30 4-24 (208)
439 3ozx_A RNAse L inhibitor; ATP 95.5 0.0077 2.6E-07 50.7 3.0 22 10-31 27-48 (538)
440 1tue_A Replication protein E1; 95.4 0.0067 2.3E-07 44.4 2.2 21 10-30 60-80 (212)
441 3syl_A Protein CBBX; photosynt 95.4 0.011 3.6E-07 45.8 3.5 24 7-30 66-89 (309)
442 3j16_B RLI1P; ribosome recycli 95.4 0.0088 3E-07 51.1 3.2 22 10-31 105-126 (608)
443 3b5x_A Lipid A export ATP-bind 95.4 0.0097 3.3E-07 50.6 3.3 22 10-31 371-392 (582)
444 1ofh_A ATP-dependent HSL prote 95.3 0.01 3.4E-07 45.8 3.2 24 8-31 50-73 (310)
445 3b60_A Lipid A export ATP-bind 95.3 0.0085 2.9E-07 50.9 2.9 22 10-31 371-392 (582)
446 3zvl_A Bifunctional polynucleo 95.3 0.014 4.7E-07 47.5 3.8 25 7-31 257-281 (416)
447 2qby_A CDC6 homolog 1, cell di 95.3 0.0087 3E-07 47.5 2.6 24 8-31 45-68 (386)
448 2dr3_A UPF0273 protein PH0284; 95.2 0.01 3.4E-07 44.2 2.8 21 10-30 25-45 (247)
449 1nlf_A Regulatory protein REPA 95.2 0.0096 3.3E-07 45.5 2.7 21 10-30 32-52 (279)
450 4fcw_A Chaperone protein CLPB; 95.2 0.017 5.7E-07 44.7 4.1 23 9-31 48-70 (311)
451 2px0_A Flagellar biosynthesis 95.2 0.0092 3.1E-07 46.3 2.6 21 9-29 106-126 (296)
452 2ocp_A DGK, deoxyguanosine kin 95.2 0.012 4.2E-07 43.9 3.3 23 9-31 3-25 (241)
453 1sxj_E Activator 1 40 kDa subu 95.2 0.0088 3E-07 47.2 2.5 20 11-30 39-58 (354)
454 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.011 3.8E-07 46.3 3.0 23 9-31 46-68 (322)
455 3co5_A Putative two-component 95.2 0.0054 1.8E-07 42.0 1.0 23 9-31 28-50 (143)
456 1sxj_C Activator 1 40 kDa subu 95.2 0.011 3.7E-07 46.6 2.9 21 11-31 49-69 (340)
457 1fnn_A CDC6P, cell division co 95.2 0.011 3.9E-07 47.0 3.0 22 10-31 46-67 (389)
458 3bk7_A ABC transporter ATP-bin 95.1 0.012 4.1E-07 50.3 3.2 22 10-31 119-140 (607)
459 3a8t_A Adenylate isopentenyltr 95.1 0.014 4.7E-07 46.1 3.3 23 9-31 41-63 (339)
460 1vma_A Cell division protein F 95.1 0.013 4.5E-07 45.6 3.2 22 9-30 105-126 (306)
461 3ld9_A DTMP kinase, thymidylat 95.1 0.017 6E-07 42.8 3.7 26 5-30 18-43 (223)
462 3foz_A TRNA delta(2)-isopenten 95.1 0.018 6.3E-07 44.8 3.9 24 8-31 10-33 (316)
463 3exa_A TRNA delta(2)-isopenten 95.1 0.014 4.7E-07 45.6 3.2 22 10-31 5-26 (322)
464 3eie_A Vacuolar protein sortin 95.1 0.012 4.2E-07 46.0 3.0 24 8-31 51-74 (322)
465 2h92_A Cytidylate kinase; ross 95.1 0.013 4.4E-07 43.0 2.9 23 8-30 3-25 (219)
466 3qks_A DNA double-strand break 95.1 0.015 5E-07 42.4 3.2 19 11-29 26-44 (203)
467 4i1u_A Dephospho-COA kinase; s 95.0 0.019 6.5E-07 42.1 3.7 30 1-30 1-31 (210)
468 2yl4_A ATP-binding cassette SU 95.0 0.0091 3.1E-07 50.9 2.2 22 10-31 372-393 (595)
469 4edh_A DTMP kinase, thymidylat 95.0 0.018 6.3E-07 42.3 3.6 24 7-30 5-28 (213)
470 3ozx_A RNAse L inhibitor; ATP 95.0 0.013 4.3E-07 49.4 3.0 22 10-31 296-317 (538)
471 3qf4_B Uncharacterized ABC tra 95.0 0.0099 3.4E-07 50.7 2.4 22 10-31 383-404 (598)
472 1sxj_D Activator 1 41 kDa subu 95.0 0.013 4.5E-07 46.0 3.0 21 11-31 61-81 (353)
473 2qgz_A Helicase loader, putati 95.0 0.015 5.1E-07 45.3 3.2 24 8-31 152-175 (308)
474 3v9p_A DTMP kinase, thymidylat 95.0 0.012 4E-07 43.9 2.4 24 7-30 24-47 (227)
475 1yqt_A RNAse L inhibitor; ATP- 95.0 0.015 5.3E-07 48.9 3.4 22 10-31 314-335 (538)
476 4b4t_K 26S protease regulatory 95.0 0.014 4.8E-07 47.6 3.1 23 9-31 207-229 (428)
477 2r62_A Cell division protease 95.0 0.0061 2.1E-07 46.2 0.9 22 10-31 46-67 (268)
478 3tqf_A HPR(Ser) kinase; transf 94.9 0.016 5.6E-07 41.2 2.9 24 9-32 17-40 (181)
479 3bk7_A ABC transporter ATP-bin 94.9 0.016 5.4E-07 49.5 3.4 23 10-32 384-406 (607)
480 2bjv_A PSP operon transcriptio 94.9 0.015 5.3E-07 43.9 3.1 24 9-32 30-53 (265)
481 2v1u_A Cell division control p 94.9 0.012 4.1E-07 46.7 2.5 25 7-31 43-67 (387)
482 2ga8_A Hypothetical 39.9 kDa p 94.9 0.025 8.6E-07 44.9 4.2 24 7-30 23-46 (359)
483 3pfi_A Holliday junction ATP-d 94.9 0.015 5.2E-07 45.6 3.0 23 9-31 56-78 (338)
484 4b4t_M 26S protease regulatory 94.9 0.015 5.3E-07 47.5 3.0 24 8-31 215-238 (434)
485 2z4s_A Chromosomal replication 94.9 0.015 5E-07 47.7 2.9 23 9-31 131-153 (440)
486 3uk6_A RUVB-like 2; hexameric 94.9 0.013 4.5E-07 46.4 2.6 23 9-31 71-93 (368)
487 4a82_A Cystic fibrosis transme 94.8 0.0088 3E-07 50.8 1.6 21 10-30 369-389 (578)
488 1pzn_A RAD51, DNA repair and r 94.8 0.014 4.9E-07 46.3 2.7 23 10-32 133-155 (349)
489 4ido_A Atlastin-1; GTPase, GTP 94.8 0.061 2.1E-06 44.1 6.4 63 6-68 65-152 (457)
490 2qen_A Walker-type ATPase; unk 94.8 0.018 6E-07 45.1 3.2 22 10-31 33-54 (350)
491 2qp9_X Vacuolar protein sortin 94.8 0.017 5.7E-07 45.9 3.0 23 9-31 85-107 (355)
492 4b4t_L 26S protease subunit RP 94.8 0.017 5.7E-07 47.3 3.0 24 8-31 215-238 (437)
493 3j16_B RLI1P; ribosome recycli 94.8 0.017 5.9E-07 49.3 3.2 22 11-32 381-402 (608)
494 2r8r_A Sensor protein; KDPD, P 94.8 0.025 8.5E-07 42.0 3.7 24 6-29 4-27 (228)
495 1um8_A ATP-dependent CLP prote 94.8 0.017 5.7E-07 46.2 3.0 24 8-31 72-95 (376)
496 3qf4_A ABC transporter, ATP-bi 94.8 0.011 3.8E-07 50.3 2.1 21 10-30 371-391 (587)
497 3hws_A ATP-dependent CLP prote 94.7 0.017 5.9E-07 45.9 3.0 24 8-31 51-74 (363)
498 3m6a_A ATP-dependent protease 94.7 0.016 5.6E-07 48.8 2.9 21 10-30 110-130 (543)
499 3d8b_A Fidgetin-like protein 1 94.7 0.018 6.1E-07 45.8 3.0 24 8-31 117-140 (357)
500 3pxg_A Negative regulator of g 94.7 0.016 5.5E-07 47.9 2.8 22 9-30 202-223 (468)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1e-40 Score=251.04 Aligned_cols=165 Identities=30% Similarity=0.515 Sum_probs=139.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
.+.+||+|+|++|||||||+++|..+.|...+.||.+.++ .....+++..+.+.+|||+|+++|+.+++.+++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 4679999999999999999999999999999999998665 446778899999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
+|||++++++|+++ ..|+..+.... +++|++|||||+|+...+. +..+++.++++++++ +|++|||+
T Consensus 91 lv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~SAk 158 (216)
T 4dkx_A 91 VVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAK 158 (216)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred EEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------ccHHHHhhHHHHhCC-eeEEEeCC
Confidence 99999999999998 78888776654 7899999999999987765 899999999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028362 164 TQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~ 182 (210)
+|.||+++|+.|++.+...
T Consensus 159 tg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 159 AGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp TTBSHHHHHHHHHHHC---
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 9999999999999988643
No 2
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=3.3e-37 Score=231.29 Aligned_cols=198 Identities=75% Similarity=1.239 Sum_probs=154.3
Q ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCcc
Q 028362 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (210)
Q Consensus 2 ~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 81 (210)
.|+..+.+||+++|++|||||||+++|..+.+...+.||.+..+...+.+++..+.+.+||+||+++|..++..+++++|
T Consensus 3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 82 (212)
T 2j0v_A 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD 82 (212)
T ss_dssp CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence 36667889999999999999999999999998888888988877777778888999999999999999999999999999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
++|+|||++++.++.++...|+..+....+++|+++|+||+|+......... ....+..+++..++..++..+++++|
T Consensus 83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (212)
T 2j0v_A 83 IFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECS 160 (212)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEcc
Confidence 9999999999999999855899998887778999999999999765431111 11135788899999999876899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCccchh----hhhhcCCCeEEEEe
Q 028362 162 SKTQQNVKAVFDAAIKVVIKPPQKQK----EKKKKQRGCLLNVF 201 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~~~~~~----~~~~~~~~c~~~~~ 201 (210)
|+++.|++++|+++++.+.....++. .++++.+.|.++..
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 204 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIASI 204 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHHCC-----------------------
T ss_pred CCCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEehH
Confidence 99999999999999999988765443 23334457877643
No 3
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=5.3e-35 Score=216.38 Aligned_cols=172 Identities=43% Similarity=0.796 Sum_probs=154.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
..+.+||+++|.+|||||||+++|.++.+...+.||.+..+.....+++..+.+.+||+||++++..++..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 45679999999999999999999999999888899998888878888999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
+|||++++.++.++...|+..+....+++|+++|+||+|+.... ...+..+++..++..++..+++++||++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG--------SDDVTKQEGDDLCQKLGCVAYIEASSVA 171 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT--------TTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC--------CCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence 99999999999997678999988877889999999999997531 1127788999999999985599999999
Q ss_pred CCCHHHHHHHHHHHHhCCcc
Q 028362 165 QQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~~~~~ 184 (210)
+.|++++|+++.+.+.....
T Consensus 172 ~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSCC
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999987643
No 4
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=219.53 Aligned_cols=181 Identities=30% Similarity=0.464 Sum_probs=144.3
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 3 ~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
|...+.+||+|+|.+|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||++++..++..+++++|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 44567899999999999999999999999998888888888776666777888999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
+++|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++...+. +++++
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 166 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMES 166 (201)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence 9999999999999998 68888777653 5799999999999987654 788899999999997 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCccchhhhhhcCCCeEEE
Q 028362 161 SSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN 199 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 199 (210)
||+++.|++++|+++.+.+...... .+++++|.+|
T Consensus 167 Sa~~~~~v~~l~~~l~~~i~~~~~~----~~~~~~c~l~ 201 (201)
T 3oes_A 167 SARENQLTQGIFTKVIQEIARVENS----YGQERRCHLM 201 (201)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred eCCCCCCHHHHHHHHHHHHHhhhhh----hccccccccC
Confidence 9999999999999999999766433 3345557664
No 5
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=7.1e-36 Score=218.51 Aligned_cols=180 Identities=81% Similarity=1.326 Sum_probs=135.1
Q ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCcc
Q 028362 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (210)
Q Consensus 2 ~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 81 (210)
||+.++.+||+++|++|||||||++++..+.+...+.||.+..+.....+++..+.+.+||+||++++...+..+++++|
T Consensus 2 s~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp -----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 56778889999999999999999999999988888888887766555566778889999999999999999999999999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
++++|||++++.+++.+...|+..+....+++|+++|+||+|+...............+..+++..++..++..+++++|
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 161 (182)
T 3bwd_D 82 VFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECS 161 (182)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEE
Confidence 99999999999999998557999888877789999999999997654311112222335788899999999866899999
Q ss_pred cCCCCCHHHHHHHHHHHHhC
Q 028362 162 SKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~ 181 (210)
|+++.|++++|+++.+.+.+
T Consensus 162 a~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 162 SKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999998865
No 6
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2.7e-35 Score=216.51 Aligned_cols=181 Identities=34% Similarity=0.559 Sum_probs=147.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
++.+||+++|++|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||++++..++..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 56799999999999999999999999988888888877777778889999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.... +..+.+..++..++. +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (189)
T 4dsu_A 82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAK 148 (189)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 9999999999987 67777776643 589999999999997543 678889999999986 89999999
Q ss_pred CCCCHHHHHHHHHHHHhCCccc-----hhhhhhcCCCeEEE
Q 028362 164 TQQNVKAVFDAAIKVVIKPPQK-----QKEKKKKQRGCLLN 199 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~~~~-----~~~~~~~~~~c~~~ 199 (210)
++.|++++|+++.+.+....+. ...+++++.+|+++
T Consensus 149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence 9999999999999988755432 22334445567764
No 7
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=4.9e-35 Score=220.12 Aligned_cols=181 Identities=36% Similarity=0.649 Sum_probs=150.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
....+||+|+|++|||||||+++|..+.+...+.||.+..+.....+++..+.+.+||++|+++|..++..+++++|++|
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 34679999999999999999999999999988899998888777778888999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
+|||+++++++..+...|+..+....+++|+++|+||+|+..+..... .......+..+++..++..++..+++++||
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 183 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEecc
Confidence 999999999999955899999988888999999999999976310000 000112278899999999999768999999
Q ss_pred CCCCC-HHHHHHHHHHHHhCCccc
Q 028362 163 KTQQN-VKAVFDAAIKVVIKPPQK 185 (210)
Q Consensus 163 ~~~~~-i~~~~~~i~~~~~~~~~~ 185 (210)
+++.| ++++|+++++.+......
T Consensus 184 ~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 184 FTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp TTCHHHHHHHHHHHHHHHHC----
T ss_pred CCCcccHHHHHHHHHHHHhccCcC
Confidence 99998 999999999999876543
No 8
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.3e-35 Score=215.59 Aligned_cols=178 Identities=51% Similarity=0.963 Sum_probs=151.9
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
...+.+||+++|++|||||||+++|..+.+...+.||.+..+...+.+++..+.+.+||+||++++..++..+++++|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 33477999999999999999999999999888888888877776777788889999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
++|||+++++++..+...|+..+....+++|+++|+||+|+........ .......+..+++..++..++..+++++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 9999999999999985589888888777899999999999976421000 00111236788999999999876899999
Q ss_pred cCCCCCHHHHHHHHHHHHhC
Q 028362 162 SKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~ 181 (210)
|+++.|++++|+++++.+..
T Consensus 174 a~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999998875
No 9
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.2e-35 Score=212.71 Aligned_cols=173 Identities=32% Similarity=0.566 Sum_probs=148.5
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 79 (210)
|+......+||+++|++|||||||+++|.++.+...+.++.+.++. ..+..++..+.+.+||+||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 5566678899999999999999999999999888777888766654 456778889999999999999999999999999
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
+|++++|||++++.++..+ ..|+..+....+++|+++|+||+|+..... +..+++..++...+. ++++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~ 149 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFE 149 (181)
T ss_dssp CSEEEEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEE
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEE
Confidence 9999999999999999997 789888888778999999999999987654 677889999999987 8999
Q ss_pred eccCCCCCHHHHHHHHHHHHhCCccc
Q 028362 160 CSSKTQQNVKAVFDAAIKVVIKPPQK 185 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~~~~~~~ 185 (210)
+||+++.|++++|+++.+.+......
T Consensus 150 ~Sa~~~~gi~~l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 150 TSAKENVNVEEMFNCITELVLRAKKD 175 (181)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988765433
No 10
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.8e-34 Score=211.54 Aligned_cols=180 Identities=61% Similarity=1.044 Sum_probs=153.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
+.+.+||+++|++|||||||+++|..+.+...+.++....+.....+++..+.+.+||+||++++..++..+++.+|+++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 35689999999999999999999999998888888888777777888999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
+|||++++.++.++...|+..+....+++|+++|+||+|+........ .......+..+++..++..++..+++++||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 999999999999985579888887777899999999999976421000 000112367788899999988768999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCcc
Q 028362 163 KTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
+++.|++++|+++.+.+.+...
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSCCCC
T ss_pred CCccCHHHHHHHHHHHHhcccc
Confidence 9999999999999999987654
No 11
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=9.1e-35 Score=213.49 Aligned_cols=179 Identities=37% Similarity=0.700 Sum_probs=150.6
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
.....+||+++|++|||||||+++|..+.+...+.|+....+...+.+++..+.+.+||+||++.|..++..+++.+|++
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45678999999999999999999999999988888998888777777888899999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
++|||++++.++.++...|+..+....++.|+++|+||+|+........ .......+..+++..++..++..+++++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 9999999999999876689888887777899999999999975311000 00111237788899999998866999999
Q ss_pred cC-CCCCHHHHHHHHHHHHhCC
Q 028362 162 SK-TQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 162 a~-~~~~i~~~~~~i~~~~~~~ 182 (210)
|+ ++.|++++|+++.+.+.++
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHTC
T ss_pred ecCCCcCHHHHHHHHHHHHhcC
Confidence 99 6899999999999988753
No 12
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.8e-34 Score=211.07 Aligned_cols=169 Identities=27% Similarity=0.411 Sum_probs=149.6
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
...+.+||+++|++|||||||+++|..+.+...+.++....+......++..+.+.+||+||++++..++..+++.+|++
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 45678999999999999999999999998888888998888877788899999999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
++|||++++++++.+ ..|+..+.... .++|+++|+||+|+..... +..+++..++..++. +++++|
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 149 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLESS 149 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECC
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce----------ecHHHHHHHHHHhCC-cEEEEe
Confidence 999999999999998 67877765543 5899999999999976654 788999999999987 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCcc
Q 028362 162 SKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
|+++.|++++|+++.+.+.....
T Consensus 150 a~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 150 AKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp TTSHHHHHHHHHHHHHHHHTC--
T ss_pred cCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999987653
No 13
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=6.1e-35 Score=218.24 Aligned_cols=181 Identities=37% Similarity=0.701 Sum_probs=149.5
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCc
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 80 (210)
|+......+||+++|++|||||||+++|..+.+...+.||....+...+.+++..+.+.+||++|++.|..++..+++++
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 100 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence 55555678999999999999999999999999988888998888776777788899999999999999999999999999
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 81 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
+++|+|||++++.++.++...|+..+....++.|+++|+||+|+........ .......+..+++..+++.++..+++
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 180 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI 180 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEE
Confidence 9999999999999999876689888887777899999999999975311000 00111236788899999998866899
Q ss_pred EeccC-CCCCHHHHHHHHHHHHhC
Q 028362 159 ECSSK-TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 159 ~~Sa~-~~~~i~~~~~~i~~~~~~ 181 (210)
++||+ ++.|++++|+++++.+.+
T Consensus 181 e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 181 ECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EeeeccCCcCHHHHHHHHHHHHhh
Confidence 99999 689999999999988764
No 14
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=216.08 Aligned_cols=165 Identities=30% Similarity=0.539 Sum_probs=148.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
..+.++|+|+|++|||||||+++|..+.+...+.++....+...+.+++..+.+.+||+||++++..++..+++.+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 34579999999999999999999999998888888888877777888999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++..++. +++++||
T Consensus 91 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 158 (206)
T 2bov_A 91 CVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSA 158 (206)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeC
Confidence 99999999999997 78888777655 4899999999999987654 778889999998887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028362 163 KTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~ 181 (210)
+++.|++++|+++.+.+..
T Consensus 159 ~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 159 KTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 15
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=2.8e-35 Score=215.75 Aligned_cols=170 Identities=28% Similarity=0.591 Sum_probs=119.9
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 79 (210)
|+......+||+++|++|||||||+++|..+.+...+.|+.+.++. ..+.+++..+.+.+||+||++++..++..++++
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence 6666678899999999999999999999998887777787776654 456678899999999999999999999999999
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
+|++|+|||++++.++..+ ..|+..+.... +++|+++|+||+|+..... +..+++..++..++. +++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~ 148 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFM 148 (183)
T ss_dssp CSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEE
T ss_pred CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------CCHHHHHHHHHHcCC-eEE
Confidence 9999999999999999987 67888877664 6899999999999976543 678889999999987 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
++||+++.|++++|.++.+.+.+.
T Consensus 149 ~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 149 ETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp ECCC---CCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 16
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=214.23 Aligned_cols=179 Identities=51% Similarity=0.855 Sum_probs=143.6
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
...+.+||+++|++|||||||+++|.++.+...+.||....+...+.+++..+.+.+||+||++++..++..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 34578999999999999999999999998888888888887777788899999999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
|+|||++++.++.++...|+..+....+++|+++|+||+|+........ .......+..+++..++..++..+++++|
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 175 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECS 175 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEe
Confidence 9999999999999985579988888777999999999999976421000 00011236788899999998877899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCC
Q 028362 162 SKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~ 182 (210)
|+++.|++++|+++.+.+.+.
T Consensus 176 a~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 176 ALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999988644
No 17
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=210.94 Aligned_cols=165 Identities=23% Similarity=0.423 Sum_probs=142.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
...+.+||+|+|++|||||||+++|..+.+...+.+|.+..+.....+++..+.+.+||++|+++++.+ ..++++++++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 345779999999999999999999999998888899998888777788999999999999999998875 6789999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
++|||+++++++..+ ..|+..+.... .++|+++|+||+|+..... +..+++.+++..++. ++++
T Consensus 96 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e 163 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFE 163 (187)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEE
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEE
Confidence 999999999999998 68888777653 5899999999999976554 788899999999997 8999
Q ss_pred ecc-CCCCCHHHHHHHHHHHHhC
Q 028362 160 CSS-KTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 160 ~Sa-~~~~~i~~~~~~i~~~~~~ 181 (210)
+|| +++.|++++|+++++.+.+
T Consensus 164 ~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 164 VSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CCSSSCSHHHHHHHHHHHHHHHC
T ss_pred EeecCccccHHHHHHHHHHHHhh
Confidence 999 8999999999999998754
No 18
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=9e-34 Score=211.66 Aligned_cols=170 Identities=29% Similarity=0.578 Sum_probs=148.6
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 79 (210)
|+......+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+||+||++++...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 6655678899999999999999999999999988888888876664 356678889999999999999999999999999
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
+|++|+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+..... +..+++..++...+. +++
T Consensus 81 ~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 148 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFL 148 (206)
T ss_dssp CSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEE
T ss_pred CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEE
Confidence 9999999999999999997 67888887665 6899999999999976544 677888999988886 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
++||+++.|++++|.++.+.+...
T Consensus 149 ~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 149 ETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988643
No 19
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=6.7e-34 Score=207.58 Aligned_cols=170 Identities=31% Similarity=0.517 Sum_probs=148.2
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCc
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 80 (210)
|.....+.+||+++|.+|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||++++..++..+++.+
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 44445678999999999999999999999999888888998888777788899999999999999999999999999999
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHH-hccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 81 DVFVLAFSLVSRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
|++++|||++++.++..+ ..|+..+ .... .++|+++|+||+|+..... +..+++..++...+. +++
T Consensus 82 d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~ 149 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYF 149 (181)
T ss_dssp SEEEEEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEE
T ss_pred CEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEE
Confidence 999999999999999987 5776665 4333 5899999999999987654 678888999988886 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
++||+++.|++++|+++.+.+.+.
T Consensus 150 ~~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 150 EASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999988654
No 20
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=5.8e-34 Score=214.17 Aligned_cols=177 Identities=44% Similarity=0.863 Sum_probs=131.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.+.+||+++|++|||||||+++|.++.+...+.|+....+.....+++..+.+.+||+||++++..++..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 46799999999999999999999999888888888887777778889999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
|||++++.++..+...|+..+....+++|+++|+||+|+........ .......+..+++..+++.++..+++++||+
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 191 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence 99999999999985579988888778899999999999976531000 0001123677888999999987789999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028362 164 TQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~ 182 (210)
++.|++++|+++.+.+...
T Consensus 192 ~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 192 LHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTBSHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 21
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.9e-34 Score=209.43 Aligned_cols=166 Identities=20% Similarity=0.297 Sum_probs=139.1
Q ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCcc
Q 028362 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (210)
Q Consensus 2 ~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 81 (210)
||...+.+||+++|++|||||||+++|.++.+.. +.||.+..+...+.+++..+.+.+||++|+++ ..+++++|
T Consensus 1 Sm~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 1 SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 4666788999999999999999999999998876 67888777777788899999999999999987 35788899
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHhcc---C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362 82 VFVLAFSLVSRASYENVLKKWIPELQHY---S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (210)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
++|+|||+++++++..+ ..|+..+... . +++|+++|+||+|+.... ...+..+++..++...+..++
T Consensus 75 ~~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~ 145 (178)
T 2iwr_A 75 AVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALXADMKRCSY 145 (178)
T ss_dssp EEEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHHSSEEE
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cCcCCHHHHHHHHHhhcCCeE
Confidence 99999999999999997 6765544432 2 589999999999995321 012678888999988755689
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 158 IECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 158 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
+++||+++.|++++|+++++.+...
T Consensus 146 ~~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 146 YETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654
No 22
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=5.5e-34 Score=208.80 Aligned_cols=165 Identities=32% Similarity=0.510 Sum_probs=147.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
..+.+||+|+|++|||||||+++|..+.+...+.++....+.....+++..+.+.+||+||++.+..++..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 45679999999999999999999999998888889988888777888999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
+|||+++++++..+ ..|+..+... ..++|+++|+||+|+..... +..+++..++..++. +++++||
T Consensus 95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 162 (183)
T 3kkq_A 95 IVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSA 162 (183)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC----------cCHHHHHHHHHHhCC-eEEEecc
Confidence 99999999999988 6777766543 26899999999999977554 788899999999996 8999999
Q ss_pred C-CCCCHHHHHHHHHHHHhC
Q 028362 163 K-TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 163 ~-~~~~i~~~~~~i~~~~~~ 181 (210)
+ ++.|++++|+++.+.+.+
T Consensus 163 ~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 163 KDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SSSCBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 9 999999999999988753
No 23
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=8.1e-34 Score=204.54 Aligned_cols=163 Identities=27% Similarity=0.518 Sum_probs=144.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
+.+||+++|++|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46999999999999999999999999888888888887777777788899999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 87 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
||++++.++..+ ..|+..+... ..+.|+++|+||+|+..... +..+++..+++.++..+++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCC
Confidence 999999999987 6677666554 25899999999999977654 6788889999888545899999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 028362 165 QQNVKAVFDAAIKVVI 180 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~ 180 (210)
+.|++++|+++.+.+.
T Consensus 151 ~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 151 KINVNEIFYDLVRQIN 166 (167)
T ss_dssp TBSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998874
No 24
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.1e-33 Score=207.87 Aligned_cols=164 Identities=22% Similarity=0.338 Sum_probs=141.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
...+.+||+|+|++|||||||+++|..+.+...+.|+. ..+...+.+++..+.+.+||++|++.++ +++++|++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 45678999999999999999999999999988878874 4556778889999999999999999887 78889999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.... ...+..+++..++..++..+++++|
T Consensus 90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~S 160 (184)
T 3ihw_A 90 VFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAAN--------PRVIDDSRARKLSTDLKRCTYYETC 160 (184)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc--------ccccCHHHHHHHHHHcCCCeEEEec
Confidence 999999999999998 67988887764 589999999999995321 1127888999999999856999999
Q ss_pred cCCCCCHHHHHHHHHHHHhCC
Q 028362 162 SKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~ 182 (210)
|+++.|++++|+++++.+...
T Consensus 161 a~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 161 ATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp TTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988654
No 25
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.7e-33 Score=203.59 Aligned_cols=165 Identities=32% Similarity=0.591 Sum_probs=138.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
..+.+||+++|++|||||||+++|..+.+...+.++.+..+. ....+++..+.+.+||+||++++...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 457899999999999999999999999888777888876654 4566788889999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
++|+|++++.++..+ ..|+..+.... +++|+++|+||+|+..... +..+++..++...+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1z08_A 83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence 999999999999987 68887776654 5799999999999977654 678889999999886 8899999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028362 163 KTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~ 181 (210)
+++.|++++|+++.+.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 151 KQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 26
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=8e-34 Score=208.36 Aligned_cols=170 Identities=27% Similarity=0.518 Sum_probs=148.2
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 79 (210)
|+....+.+||+|+|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||+||++++...+..++++
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 555567789999999999999999999999998888788877655 4456778888999999999999999999999999
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
+|++|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++...+. +++
T Consensus 83 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 150 (186)
T 2bme_A 83 AAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFL 150 (186)
T ss_dssp CSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEE
T ss_pred CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEE
Confidence 9999999999999999987 68887776654 6899999999999976544 677888999998886 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
++||+++.|++++|+++.+.+.+.
T Consensus 151 ~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 151 ETSALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 27
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.1e-33 Score=203.76 Aligned_cols=164 Identities=30% Similarity=0.539 Sum_probs=143.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.+.+||+++|++|||||||+++|.++.+...+.++....+......++..+.+.+||+||++++..++..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 35799999999999999999999999888888888887777777889999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
|||+++++++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++..++. +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (168)
T 1u8z_A 82 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAK 149 (168)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCC
Confidence 9999999999987 67877776654 4899999999999977654 678889999998886 89999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028362 164 TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~ 181 (210)
++.|++++|+++.+.+.+
T Consensus 150 ~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 150 TRANVDKVFFDLMREIRA 167 (168)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 28
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2.6e-33 Score=208.58 Aligned_cols=176 Identities=47% Similarity=0.869 Sum_probs=151.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
...+||+++|.+|||||||+++|..+.+...+.|+.+..+...+.+++..+.+.+||+||++++..++..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 46799999999999999999999999988888888887776677888999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
|||+++++++..+...|+..+....+++|+++|+||+|+........ .......+..+++..++...+..+++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence 99999999999886788888887777899999999999976521000 0011123677889999999987789999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028362 164 TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~ 181 (210)
++.|++++|+++.+.+.+
T Consensus 183 ~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 183 TKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998764
No 29
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.2e-33 Score=209.02 Aligned_cols=179 Identities=46% Similarity=0.852 Sum_probs=146.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
....+||+++|.+|||||||+++|..+.+...+.|+....+...+.+++..+.+.+||+||++++..++..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 35678999999999999999999999998888888887777667778899999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
+|||++++.++..+...|+..+....+++|+++|+||+|+......... ......+..+++..++...+..+++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 9999999999998867888888877778999999999999765210000 00111267788899999988778999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCc
Q 028362 163 KTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~~ 183 (210)
+++.|++++|+++.+.+....
T Consensus 182 ~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999988653
No 30
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=208.99 Aligned_cols=169 Identities=30% Similarity=0.598 Sum_probs=148.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
.....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+..++..+.+.+||+||++.+..++..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 3346799999999999999999999999988888888766654 457778899999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++..++. +++++|
T Consensus 92 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 159 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETS 159 (196)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEEC
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEe
Confidence 9999999999999998 67888887765 5899999999999977654 778889999999987 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCcc
Q 028362 162 SKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
|+++.|++++|+++.+.+.....
T Consensus 160 a~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 160 AKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999876543
No 31
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=5e-34 Score=212.55 Aligned_cols=167 Identities=31% Similarity=0.515 Sum_probs=139.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
..+.+||+|+|++|||||||+++|..+.+...+.+|.+.++ ...+.+++..+.+.+||+||++++..++..+++++|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 45679999999999999999999999998887788876665 44567788889999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
|+|||++++.+++.+ ..|+..+.... .++|+++|+||+|+...+. +..+++.+++..++..+++++||
T Consensus 106 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA 174 (201)
T 2hup_A 106 ILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSA 174 (201)
T ss_dssp EEEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeC
Confidence 999999999999987 68888877765 6899999999999987544 67888999999988768999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028362 163 KTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~ 182 (210)
+++.|++++|+++++.+.+.
T Consensus 175 ~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988643
No 32
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.8e-34 Score=211.67 Aligned_cols=164 Identities=26% Similarity=0.469 Sum_probs=143.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
...++|+++|++|||||||+++|..+.+...+.|+....+......++..+.+.+||+||++++..++..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 46799999999999999999999999988888888877776667788899999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
|||++++.++..+ ..|+..+.... +++|+++|+||+|+.... +..+++..++..++. +++++||
T Consensus 86 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa 152 (199)
T 2gf0_A 86 VFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC-AFMETSA 152 (199)
T ss_dssp EEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----------cCHHHHHHHHHHhCC-eEEEEec
Confidence 9999999999887 56665555432 478999999999997633 577888889988886 8999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028362 163 KTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~ 182 (210)
+++.|++++|+++.+.+...
T Consensus 153 ~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 153 KMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp TTTBSHHHHHHHHHHHCSSS
T ss_pred CCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999988655
No 33
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-33 Score=209.97 Aligned_cols=166 Identities=32% Similarity=0.585 Sum_probs=146.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
..+.+||+|+|++|||||||+++|..+.+...+.++.+.++ ...+.+++..+.+.+||+||++++..++..+++++|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 34679999999999999999999999998888888877665 34567788999999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++...+. +++++||
T Consensus 103 i~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 170 (201)
T 2ew1_A 103 ILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSA 170 (201)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999987 78888887765 5799999999999976544 678888899988886 8999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028362 163 KTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~ 182 (210)
+++.|++++|+++.+.+...
T Consensus 171 ~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 171 KESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988753
No 34
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=3.3e-33 Score=201.76 Aligned_cols=164 Identities=30% Similarity=0.544 Sum_probs=143.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
..+.+||+++|++|||||||+++|..+.+...+.++.+..+ .....+++..+.+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35779999999999999999999999988877777776665 34566788899999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
++|||++++.++..+ ..|+..+.... +++|+++|+||+|+..... +..+++..++...+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1r2q_A 83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999987 68877776654 7899999999999976543 677888899988886 8999999
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 028362 163 KTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~ 180 (210)
+++.|++++|+++.+.+.
T Consensus 151 ~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 151 KTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TTCTTHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988764
No 35
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=4.1e-33 Score=203.61 Aligned_cols=167 Identities=32% Similarity=0.559 Sum_probs=144.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
..+.+||+++|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+||+||++++...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 456799999999999999999999999888777777766553 4566788899999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
|+|||++++.++..+ ..|+..+.... +++|+++|+||+|+..... +..+++..++...+. +++++||
T Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 156 (181)
T 2efe_B 89 IIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSA 156 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECCS
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------CCHHHHHHHHHHcCC-EEEEEEC
Confidence 999999999999987 68888777665 6899999999999976544 678889999998886 8999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCc
Q 028362 163 KTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~~ 183 (210)
+++.|++++|+++.+.+...+
T Consensus 157 ~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 157 KTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp SSCTTHHHHHHHHHHTCC---
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999998876543
No 36
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=3.5e-33 Score=201.39 Aligned_cols=164 Identities=34% Similarity=0.547 Sum_probs=144.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
++.+||+++|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||+||++++..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 5679999999999999999999999988888788876555 445667888999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
+|||++++.++..+ ..|+..+....++.|+++|+||+|+..... +..+++..++...+. +++++||++
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (168)
T 1z2a_A 83 LVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVKE 150 (168)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecCC
Confidence 99999999999887 678877766557899999999999976543 678888999999887 899999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028362 165 QQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~~ 181 (210)
+.|++++|+++.+.+.+
T Consensus 151 ~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 151 DLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TBSSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999998764
No 37
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=2.4e-33 Score=209.29 Aligned_cols=175 Identities=61% Similarity=1.054 Sum_probs=148.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
..+.+||+++|.+|||||||+++|..+.+...+.++....+.....+++..+.+.+||+||++++...+..+++++|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 35679999999999999999999999999888889888887777888899999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
+|||++++.++.++...|+..+....+++|+++|+||+|+........ .......+..+++..++..++..+++++||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 186 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence 999999999999985589999888778899999999999976532110 011122267788999999999878999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 028362 163 KTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~ 179 (210)
+++.|++++|+++.+.+
T Consensus 187 ~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 187 LTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTCTTHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 38
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=8.2e-33 Score=199.82 Aligned_cols=164 Identities=26% Similarity=0.520 Sum_probs=145.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
..+.+||+++|++|||||||+++|.++.+...+.++.+.++. ....+++..+.+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 457899999999999999999999999988877888876653 4567788889999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
++|||++++.++..+ ..|+..+.... +.+|+++|+||+|+..... +..+++..++...+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1z0j_A 83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999987 78888887764 7899999999999987554 678888999988886 8999999
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 028362 163 KTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~ 180 (210)
+++.|++++|+++.+.+.
T Consensus 151 ~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 151 KNAININELFIEISRRIP 168 (170)
T ss_dssp TTTBSHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999998764
No 39
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=8.1e-33 Score=203.83 Aligned_cols=165 Identities=32% Similarity=0.632 Sum_probs=145.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 446799999999999999999999999988777888776654 3466788899999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..... +..+++..++..++. +++++||
T Consensus 99 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 166 (189)
T 2gf9_A 99 LLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASA 166 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEEC
Confidence 999999999999887 68888887765 6899999999999976544 677889999999987 8999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028362 163 KTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~ 181 (210)
+++.|++++|+++.+.+.+
T Consensus 167 ~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 167 KENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 40
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-33 Score=209.39 Aligned_cols=168 Identities=30% Similarity=0.521 Sum_probs=139.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
...+||+|+|++|||||||+++|..+.+...+.++.+.++. ..+.+++..+.+.+||+||+++|..++..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 46799999999999999999999999988777788776654 35677888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
+|||++++.++..+ ..|+..+.... .++|++||+||+|+..... +..+++..++...+. +++++||+
T Consensus 91 lV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 158 (223)
T 3cpj_B 91 IVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETSAL 158 (223)
T ss_dssp EEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCCC
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999997 78888887664 5899999999999976544 677888999998886 89999999
Q ss_pred CCCCHHHHHHHHHHHHhCCccc
Q 028362 164 TQQNVKAVFDAAIKVVIKPPQK 185 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~~~~ 185 (210)
++.|++++|+++.+.+......
T Consensus 159 ~~~gi~~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 159 NSENVDKAFEELINTIYQKVSK 180 (223)
T ss_dssp -CCCHHHHHHHHHHHHTTCC--
T ss_pred CCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998865443
No 41
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2.9e-33 Score=206.62 Aligned_cols=166 Identities=29% Similarity=0.568 Sum_probs=142.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
...+.+||+|+|++|||||||+++|..+.+...+.++.+.++. ..+.+++..+.+.+||+||++++..++..+++++|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 3457799999999999999999999999888777777765553 456778889999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+..... +..+++..++...+. +++++|
T Consensus 97 ii~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 164 (191)
T 2a5j_A 97 ALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETS 164 (191)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEe
Confidence 9999999999999987 67888777654 6899999999999976544 678889999999887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhC
Q 028362 162 SKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~ 181 (210)
|+++.|++++|+++.+.+.+
T Consensus 165 a~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 165 AKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998864
No 42
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=4.7e-33 Score=202.74 Aligned_cols=166 Identities=30% Similarity=0.585 Sum_probs=145.2
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
...+.+||+++|.+|||||||+++|..+.+...+.++.+.++ ...+.+++..+.+.+||+||++++...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 345679999999999999999999999988877778776655 3456678889999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+++|||++++.++..+ ..|+..+.... +++|+++|+||+|+..... +..+++.+++..++. +++++|
T Consensus 91 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 158 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEAS 158 (179)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECC
T ss_pred EEEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEe
Confidence 9999999999999887 78888777665 6899999999999976544 678889999999886 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhC
Q 028362 162 SKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~ 181 (210)
|+++.|++++|+++.+.+.+
T Consensus 159 a~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 159 AKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998754
No 43
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=203.27 Aligned_cols=164 Identities=23% Similarity=0.352 Sum_probs=128.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc--ccccCcccccCccEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--YNRLRPLSYRGADVF 83 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~~~~ 83 (210)
.+.+||+++|++|||||||+++|.++.+...+.+...+.+...+.+++..+.+.+||+||++. +..++..+++.++++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 467999999999999999999999887765433332333455677889999999999999987 566777788999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
++|||++++.++..+ ..|+..+.... +++|+++|+||+|+..... +..+++..++..++. +++++|
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 149 (175)
T 2nzj_A 82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETS 149 (175)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence 999999999999987 67877776643 5899999999999976544 677888888888886 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhC
Q 028362 162 SKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~ 181 (210)
|++|.|++++|+++.+.+..
T Consensus 150 a~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998854
No 44
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=5.8e-33 Score=200.47 Aligned_cols=166 Identities=31% Similarity=0.536 Sum_probs=143.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
+.+||+++|++|||||||+++|.++.+...+.|+.+.++ .....+++..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999998887788877665 3456778899999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
|+|++++.++.++ ..|+..+.... ++.|+++|+||+|+..... ...+..+++..++...+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (170)
T 1ek0_A 82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT 152 (170)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc-------ccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999987 67887776654 6899999999999976521 122677888899988886 899999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028362 165 QQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~~ 181 (210)
+.|++++|+++.+.+.+
T Consensus 153 ~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIPL 169 (170)
T ss_dssp CTTHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999887643
No 45
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=3.7e-33 Score=201.14 Aligned_cols=161 Identities=21% Similarity=0.358 Sum_probs=119.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 87 (210)
.+||+++|++|||||||+++|.+..+. ...++.+..+.....+++..+.+.+||++|++.++.++..+++.++++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 589999999999999999999876553 3345556666667788999999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (210)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (210)
|+++++++..+ ..|+..+.... +++|+++|+||+|+.+... +..+++..++...+. +++++||+++
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (166)
T 3q72_A 81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH 148 (166)
T ss_dssp ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGGT
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCCC
Confidence 99999999998 67776666543 6899999999999987654 788889999999886 8999999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 028362 166 QNVKAVFDAAIKVVIK 181 (210)
Q Consensus 166 ~~i~~~~~~i~~~~~~ 181 (210)
.|++++|+++.+.+..
T Consensus 149 ~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 149 HNVQALFEGVVRQIRL 164 (166)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
No 46
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.4e-33 Score=209.28 Aligned_cols=170 Identities=30% Similarity=0.546 Sum_probs=140.5
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 79 (210)
|+....+.+||+|+|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||+||++.+..++..++++
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence 666677889999999999999999999999998888788876555 4456677888999999999999999999999999
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccC-----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (210)
+|++|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+.... +..+++..++.....
T Consensus 81 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~ 148 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNN 148 (207)
T ss_dssp CSEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTS
T ss_pred CcEEEEEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-----------cCHHHHHHHHHhcCC
Confidence 9999999999999999887 67777665443 478999999999997432 567788888874444
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 155 SYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.+++++||+++.|++++|+++.+.+.+.
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 149 IPYFETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999988653
No 47
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-32 Score=200.59 Aligned_cols=167 Identities=33% Similarity=0.605 Sum_probs=137.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCcc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 81 (210)
..++.+||+++|++|||||||+++|..+.+. ..+.++.+.++.. ...+++..+.+.+||+||++.+...+..+++++|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3467899999999999999999999998874 4566777666544 4567889999999999999999999999999999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362 82 VFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160 (210)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
++++|+|++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++..++. +++++
T Consensus 86 ~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 153 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMET 153 (180)
T ss_dssp EEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEEC
T ss_pred EEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEE
Confidence 99999999999999887 78888877665 6899999999999976544 677888999998886 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHhCC
Q 028362 161 SSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
||+++.|++++|+++.+.+.+.
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 154 SAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 48
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-33 Score=208.13 Aligned_cols=166 Identities=28% Similarity=0.479 Sum_probs=144.7
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 3 ~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
|...+.+||+|+|++|||||||+++|..+.+...+.++....+.....+++..+.+.+||+||++. ...+..+++.+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 455678999999999999999999999999888888888887777788899999999999999988 7788888999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
+++|||++++++++.+ ..|+..+.... .++|+++|+||+|+..... +..+++..++..++. +++++
T Consensus 102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 169 (196)
T 2atv_A 102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYEC 169 (196)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEEC
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence 9999999999999987 67877776542 5899999999999987644 778889999998886 89999
Q ss_pred ccCCCC-CHHHHHHHHHHHHhC
Q 028362 161 SSKTQQ-NVKAVFDAAIKVVIK 181 (210)
Q Consensus 161 Sa~~~~-~i~~~~~~i~~~~~~ 181 (210)
||+++. |++++|+++.+.+.+
T Consensus 170 Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 170 SACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp CTTTCTTCHHHHHHHHHHHHHH
T ss_pred CCCcCCcCHHHHHHHHHHHHHh
Confidence 999999 999999999998864
No 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=203.67 Aligned_cols=169 Identities=28% Similarity=0.601 Sum_probs=147.6
Q ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCc
Q 028362 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80 (210)
Q Consensus 2 ~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 80 (210)
+....+.+||+|+|++|||||||+++|..+.+...+.++.+.++. ..+.+++..+.+.+||+||++.+..++..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (195)
T 1x3s_A 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA 88 (195)
T ss_dssp CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 334456799999999999999999999999988888888766653 4567788999999999999999999999999999
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 81 DVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
|++|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+.... +..+++..++...+. +++
T Consensus 89 d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~ 155 (195)
T 1x3s_A 89 QGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFI 155 (195)
T ss_dssp CEEEEEEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEE
T ss_pred CEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcccc-----------cCHHHHHHHHHHcCC-EEE
Confidence 999999999999999987 68888887754 579999999999995432 677888999998886 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
++||+++.|++++|+++.+.+....
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 156 EASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred EecCCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999998654
No 50
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.7e-33 Score=205.71 Aligned_cols=167 Identities=28% Similarity=0.523 Sum_probs=144.8
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
...+.+||+|+|++|||||||+++|.++.+...+.++.+.++.. ...+++..+.+.+||+||++++...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 34578999999999999999999999999887778888776643 45667788999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+|+|||++++.++..+ ..|+..+.... +++|+++|+||+|+..... +..+++.+++..++. +++++|
T Consensus 99 iilV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 166 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETS 166 (192)
T ss_dssp EEEEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECB
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEe
Confidence 9999999999999987 78888887765 5899999999999976543 678889999998886 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCC
Q 028362 162 SKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~ 182 (210)
|+++.|++++|+++.+.+.+.
T Consensus 167 a~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 167 AKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TTTTBSHHHHHHHHHHTCC--
T ss_pred CCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999877543
No 51
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=6.6e-33 Score=203.29 Aligned_cols=165 Identities=30% Similarity=0.539 Sum_probs=146.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
..+.+||+|+|++|||||||+++|..+.+...+.++....+...+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 34679999999999999999999999998888888888877777888999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..+++.++. +++++||
T Consensus 95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 162 (187)
T 2a9k_A 95 CVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSA 162 (187)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCC
Confidence 99999999999987 67777766654 3899999999999977654 678889999999886 8999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028362 163 KTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~ 181 (210)
+++.|++++|+++.+.+..
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998863
No 52
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8e-33 Score=204.43 Aligned_cols=167 Identities=31% Similarity=0.516 Sum_probs=145.9
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
...+.+||+|+|++|||||||+++|..+.+...+.++.+..+. ....+++..+.+.+||+||++++..++..+++++|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 3456799999999999999999999999888777787766553 456678889999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++...+. +++++|
T Consensus 101 vi~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 168 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETS 168 (193)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEe
Confidence 9999999999999887 67888777654 6899999999999977544 677888999988886 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCC
Q 028362 162 SKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~ 182 (210)
|+++.|++++|+++.+.+.+.
T Consensus 169 a~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 169 ALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988643
No 53
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2.4e-33 Score=204.81 Aligned_cols=171 Identities=31% Similarity=0.566 Sum_probs=126.8
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEEC-CEEEEEEEEeCCCcccccccCccccc
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYR 78 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~ 78 (210)
|+....+.+||+++|++|||||||+++|.++.+...+.|+.+.++. ..+.++ +..+.+.+||+||++.+...+..+++
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence 6666678899999999999999999999999888777777765543 344455 56688999999999999999999999
Q ss_pred CccEEEEEEECCChhHHHHHHHHHHHHHhccC-----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (210)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
.+|++|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... .+..+++..++...+
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~ 150 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLG 150 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTT
T ss_pred cCCEEEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcC
Confidence 99999999999999999887 67777665432 5789999999999954321 156788888888555
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
..+++++||+++.|++++|+++.+.+.+
T Consensus 151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 151 DIPLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp SCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 5589999999999999999999998864
No 54
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2.8e-33 Score=203.97 Aligned_cols=167 Identities=26% Similarity=0.425 Sum_probs=142.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECC-EEEEEEEEeCCCcccccccCcccccCccE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
..+.+||+++|++|||||||+++|.++.+...+.|+.+.++ ...+.+++ ..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 46789999999999999999999999888766667765443 44566665 78999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC---CCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS---PGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
+++|||++++.+++.+ ..|+..+.... ...| +++|+||+|+..... +..+++..++..++. +++
T Consensus 83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 150 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSH 150 (178)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEE
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEE
Confidence 9999999999999887 68888776642 2455 899999999977544 677888999998886 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
++||+++.|++++|+++.+.+....
T Consensus 151 ~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 151 FVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp EECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999987664
No 55
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=5.6e-33 Score=199.88 Aligned_cols=162 Identities=28% Similarity=0.554 Sum_probs=142.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
+.+||+++|++|||||||++++..+.+...+.++....+.....+++..+.+.+||+||++++..++..+++.++++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 56999999999999999999999999888888888777777788899999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
||++++.++..+ ..|...+.... .+.|+++|+||+|+..... +..+++..++..++. +++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T 1kao_A 82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS 149 (167)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCC
Confidence 999999999887 56666555443 5899999999999976544 678888899998886 899999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 028362 165 QQNVKAVFDAAIKVVI 180 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~ 180 (210)
+.|++++|+++.+.+.
T Consensus 150 ~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 150 KTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998764
No 56
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-32 Score=204.11 Aligned_cols=167 Identities=29% Similarity=0.606 Sum_probs=146.9
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
.....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+..++..+.+.+||+||++++...+..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 4456799999999999999999999999988877888776654 456678889999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..... +..+++..++..++. +++++|
T Consensus 84 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 151 (203)
T 1zbd_A 84 FILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEAS 151 (203)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------SCHHHHHHHHHHHTC-EEEECB
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHCCC-eEEEEE
Confidence 9999999999999987 67888887765 6899999999999976544 678889999999987 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCC
Q 028362 162 SKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~ 182 (210)
|+++.|++++|+++.+.+.+.
T Consensus 152 a~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 57
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=207.52 Aligned_cols=166 Identities=30% Similarity=0.549 Sum_probs=135.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
..+.+||+|+|++|||||||+++|..+.+...+.++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 35679999999999999999999999988877778776555 34566788889999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
|+|||++++.++..+ ..|+..+.... +++|+++|+||+|+..... +..+++..++...+. +++++||
T Consensus 102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA 169 (200)
T 2o52_A 102 LLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSA 169 (200)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999987 68887776654 6899999999999976544 677888999998886 8999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028362 163 KTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~ 182 (210)
+++.|++++|+++.+.+...
T Consensus 170 ~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 170 LTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 58
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8e-33 Score=207.40 Aligned_cols=165 Identities=22% Similarity=0.401 Sum_probs=133.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc-ccccCcccccCcc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGAD 81 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~ 81 (210)
....+||+|+|++|||||||+++|.+.. +...+.++..+.+...+.+++..+.+.+||++|++. ++.+...+++.++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 3466999999999999999999999643 344433333334455677899999999999999876 5666777889999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362 82 VFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (210)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
++|+|||++++.+|+.+ ..|...+... ..++|++||+||+|+...+. +..+++..++...+. ++++
T Consensus 114 ~~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----------v~~~e~~~~a~~~~~-~~~e 181 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIE 181 (211)
T ss_dssp EEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEE
T ss_pred EEEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----------EeHHHHHHHHHHcCC-EEEE
Confidence 99999999999999997 6787766543 25799999999999976544 677788888888886 8999
Q ss_pred eccCCCCCHHHHHHHHHHHHhC
Q 028362 160 CSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
+||++|.||+++|+++++.+..
T Consensus 182 ~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 182 TSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998753
No 59
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.8e-32 Score=199.50 Aligned_cols=166 Identities=34% Similarity=0.636 Sum_probs=140.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
..+.+||+++|++|||||||+++|..+.+...+.|+.+.++ ...+.+++..+.+.+||+||++++...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 35679999999999999999999999988888788877665 44567788899999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
++|||++++.++..+ ..|+..+.... .++|+++|+||+|+.... +..+++..++......+++
T Consensus 84 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~ 151 (177)
T 1wms_A 84 LLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYF 151 (177)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHTTCCCEE
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccccc-----------cCHHHHHHHHHhcCCceEE
Confidence 999999999999887 67877765442 578999999999997332 6788888888855555899
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
++||+++.|++++|+++.+.+.+.
T Consensus 152 ~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 152 ETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999998764
No 60
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=5.6e-33 Score=204.82 Aligned_cols=167 Identities=33% Similarity=0.556 Sum_probs=144.6
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee--EEEEECCE---------EEEEEEEeCCCccccccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS--ANVVAEGT---------TVNLGLWDTAGQEDYNRL 72 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~i~D~~G~~~~~~~ 72 (210)
...+.+||+|+|++|||||||+++|..+.+...+.++.+.++. .....++. .+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4457899999999999999999999999888887888876664 23444544 789999999999999999
Q ss_pred CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (210)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
+..+++++|++|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++.
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~ 155 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAE 155 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHH
Confidence 99999999999999999999999987 68888777655 5899999999999976544 67788899999
Q ss_pred HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 151 QIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.++. +++++||+++.|++++|+++.+.+.+.
T Consensus 156 ~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 156 KYGI-PYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp HHTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HcCC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 8887 899999999999999999999988653
No 61
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.8e-33 Score=205.64 Aligned_cols=172 Identities=30% Similarity=0.494 Sum_probs=135.2
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
...+.+||+|+|++|||||||+++|..+.+...+.++.+.++. ....+++..+.+.+||+||++++...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 4456799999999999999999999999887777788776654 456778899999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+...... .....+..+++..++...+. +++++|
T Consensus 104 iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~v~~~~~~~~~~~~~~-~~~~~S 177 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAAT----EGQKCVPGHFGEKLAMTYGA-LFCETS 177 (199)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHHH----TTCCCCCHHHHHHHHHHHTC-EEEECC
T ss_pred EEEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccccc----ccccccCHHHHHHHHHHcCC-eEEEee
Confidence 9999999999999987 68888887665 58999999999999743110 01122677888999999887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhC
Q 028362 162 SKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~ 181 (210)
|+++.|++++|.++.+.+.+
T Consensus 178 A~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 178 AKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 62
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.6e-32 Score=198.37 Aligned_cols=163 Identities=23% Similarity=0.366 Sum_probs=127.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEeCCCcccccc-cCcccccCccEEEE
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVL 85 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~ 85 (210)
.+||+++|++|||||||+++|.+..+.....++. ...+...+.+++..+.+.+||++|++++.. ++..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999999776654444433 333455677899999999999999999876 78888999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
|||+++++++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++..++. +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (169)
T 3q85_A 82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAA 149 (169)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCc
Confidence 9999999999998 67777766654 3899999999999986654 788999999999987 89999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028362 164 TQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~ 182 (210)
++.|++++|+++.+.+..+
T Consensus 150 ~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 150 LHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTBSHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhc
Confidence 9999999999999987643
No 63
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.9e-33 Score=205.24 Aligned_cols=166 Identities=30% Similarity=0.560 Sum_probs=137.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
....+||+|+|.+|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||+||++++...+..+++++|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34679999999999999999999999988777777776555 34566788899999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
|+|||++++.+++.+ ..|+..+.... .++|+++|+||+|+..... +..+++..++..+...+++++||
T Consensus 103 ilV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA 171 (192)
T 2il1_A 103 ILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASA 171 (192)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeC
Confidence 999999999999987 78888887765 5899999999999976654 67788889988864458999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028362 163 KTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~ 181 (210)
+++.|++++|+++.+.+.+
T Consensus 172 ~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 172 KDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 64
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1e-32 Score=199.29 Aligned_cols=163 Identities=33% Similarity=0.634 Sum_probs=137.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
..+||+++|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4689999999999999999999999888777788776654 345667788999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.... +..+++..+++.++. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (170)
T 1g16_A 82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAKN 148 (170)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------SCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcCc-----------cCHHHHHHHHHHcCC-eEEEEECCC
Confidence 9999999999887 78888777665 689999999999994332 677888999999886 899999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028362 165 QQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~~~ 182 (210)
+.|++++|+++.+.+.+.
T Consensus 149 ~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 149 DDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 65
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.2e-33 Score=199.79 Aligned_cols=163 Identities=26% Similarity=0.492 Sum_probs=141.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
+.+||+++|++|||||||+++|.++.+...+.++.+..+......++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999998887778888777766677888899999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 87 FSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
||++++.++..+ ..|+..+.... +++|+++|+||+|+..... +...++..++...+. +++++||+
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 149 (172)
T 2erx_A 82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK 149 (172)
T ss_dssp EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCC
Confidence 999999999887 56666555432 5799999999999977654 677788888888886 89999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028362 164 TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~ 181 (210)
++.|++++|+++.+.+.+
T Consensus 150 ~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 150 LNHNVKELFQELLNLEKR 167 (172)
T ss_dssp TTBSHHHHHHHHHHTCCS
T ss_pred CCcCHHHHHHHHHHHHhh
Confidence 999999999999987654
No 66
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=3.4e-32 Score=200.49 Aligned_cols=165 Identities=34% Similarity=0.539 Sum_probs=135.1
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
+..+.+||+++|.+|||||||+++|..+.+...+.++....+...+..++..+.+.+||+||++++...+..+++.++++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 34567999999999999999999999998888778888777777788889999999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
++|||++++.++..+ ..|+..+.... .++|+++|+||+|+.... +..+++.++++.++. +++++|
T Consensus 97 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~S 163 (190)
T 3con_A 97 LCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-----------VDTKQAHELAKSYGI-PFIETS 163 (190)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCccc-----------CCHHHHHHHHHHcCC-eEEEEe
Confidence 999999999999987 78887776654 479999999999997632 577888999999887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhC
Q 028362 162 SKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~ 181 (210)
|+++.|++++|+++.+.+.+
T Consensus 164 a~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 164 AKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998864
No 67
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2e-32 Score=199.41 Aligned_cols=164 Identities=33% Similarity=0.547 Sum_probs=142.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
.+.+||+++|++|||||||+++|..+.+...+.++.+.++ ...+.+++..+.+.+||+||++++...+..+++++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4669999999999999999999999988887788876554 445677888999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
+|+|++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++...+. +++++||+
T Consensus 92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (179)
T 2y8e_A 92 VVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAK 159 (179)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999887 67877766543 6899999999999976654 677888888888886 89999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028362 164 TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~ 181 (210)
++.|++++|+++.+.+..
T Consensus 160 ~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 160 AGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TTBSHHHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999887643
No 68
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=9.7e-33 Score=204.71 Aligned_cols=166 Identities=24% Similarity=0.391 Sum_probs=137.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEeCCCcccccc-cCcccccCccEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVF 83 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~ 83 (210)
...+||+|+|++|||||||+++|.+......+.|+.. +.+...+.+++..+.+.+||++|++.+.. ++..++++++++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 4679999999999999999999975443322334333 33455667899999999999999988765 777888999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++..++. +++++|
T Consensus 101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~S 168 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETS 168 (195)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC----------cCHHHHHHHHHHhCC-EEEEEc
Confidence 999999999999997 67887776654 4899999999999976544 778889999998886 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCc
Q 028362 162 SKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~~ 183 (210)
|+++.|++++|+++++.+....
T Consensus 169 a~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999987643
No 69
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.8e-34 Score=210.38 Aligned_cols=167 Identities=31% Similarity=0.605 Sum_probs=146.5
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
.....+||+|+|++|||||||+++|.++.+...+.++.+.++. .....++..+.+.+||+||++.+..++..+++++|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 3456799999999999999999999999887777777765553 345667778899999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+..... +..+++..++..++. +++++|
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 166 (191)
T 3dz8_A 99 FILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEAS 166 (191)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECB
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence 9999999999999987 67988888766 6899999999999977654 788889999999997 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCC
Q 028362 162 SKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~ 182 (210)
|+++.|++++|+++.+.+.+.
T Consensus 167 a~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 167 AKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988653
No 70
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2.8e-32 Score=200.92 Aligned_cols=164 Identities=29% Similarity=0.529 Sum_probs=139.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccc-ccCcccccCccE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADV 82 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~ 82 (210)
.++.+||+|+|.+|||||||+++|..+.+...+.++.+.++ ...+.+++..+.+.+||+||++++. .++..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 45679999999999999999999999988887778876655 3456678888999999999999998 888899999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
+|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++..++. +++++
T Consensus 97 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 164 (189)
T 1z06_A 97 VVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFET 164 (189)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEEC
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEE
Confidence 9999999999999987 67887776653 6899999999999976644 678889999998887 89999
Q ss_pred ccCCC---CCHHHHHHHHHHHHh
Q 028362 161 SSKTQ---QNVKAVFDAAIKVVI 180 (210)
Q Consensus 161 Sa~~~---~~i~~~~~~i~~~~~ 180 (210)
||+++ .|++++|.++.+.+.
T Consensus 165 Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 165 SAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CSSSGGGGSCHHHHHHHHC----
T ss_pred eCCcCCcccCHHHHHHHHHHHHh
Confidence 99999 999999999988764
No 71
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=6.8e-32 Score=193.86 Aligned_cols=162 Identities=33% Similarity=0.550 Sum_probs=143.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 86 (210)
+.+||+++|++|||||||++++..+.+...+.++....+......++..+.+.+||+||++++...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 46899999999999999999999998888778888777777778889999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362 87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (210)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (210)
||++++.++..+ ..|+..+.... .++|+++|+||+|+.... ...+++..+++.++. +++++||++
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (166)
T 2ce2_X 82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART-----------VESRQAQDLARSYGI-PYIETSAKT 148 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEEECTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----------cCHHHHHHHHHHcCC-eEEEecCCC
Confidence 999999999987 78887776654 379999999999997632 577888999998887 899999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028362 165 QQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 165 ~~~i~~~~~~i~~~~~~ 181 (210)
+.|++++|+++.+.+.+
T Consensus 149 ~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 149 RQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 72
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.2e-31 Score=199.20 Aligned_cols=165 Identities=26% Similarity=0.477 Sum_probs=139.8
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEE--------------------------
Q 028362 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTT-------------------------- 55 (210)
Q Consensus 3 ~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------------------------- 55 (210)
|+..+.+||+|+|++|||||||+++|.++.+...+.++.+..+.. .+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 556678999999999999999999999999888878887655533 34444444
Q ss_pred -----------EEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccc
Q 028362 56 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124 (210)
Q Consensus 56 -----------~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 124 (210)
+.+.+||+||++.+...+..+++.+|++++|+|++++.++..+ ..|+..+..... .|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCC-
Confidence 8899999999999999999999999999999999999999987 688887776543 99999999999
Q ss_pred ccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
..... +..+++..++...+. +++++||+++.|++++|+++.+.+.+
T Consensus 159 ~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 159 KNKFQ----------VDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CC-CC----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccc----------CCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 33322 678899999999887 89999999999999999999988754
No 73
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=4.8e-33 Score=207.53 Aligned_cols=168 Identities=26% Similarity=0.356 Sum_probs=109.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC--CCCCCCCCceeeee-eEEEEECCE--EEEEEEEeCCCcccccccCcccccCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNF-SANVVAEGT--TVNLGLWDTAGQEDYNRLRPLSYRGA 80 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 80 (210)
.+.+||+|+|++|||||||+++|..+ .+...+.+|.+.++ ...+.+++. .+.+.+||+||++.+..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999998 77777778876443 445666776 89999999999999999999999999
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHhccCC----CCcEEEEeeCccccc-ccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362 81 DVFVLAFSLVSRASYENVLKKWIPELQHYSP----GVPVVLVGTKLDLRE-DKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (210)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
|++|+|||++++.++..+ ..|+..+..... ++|+++|+||+|+.. ... +..+++..++..++.
T Consensus 98 d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~~- 165 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNTL- 165 (208)
T ss_dssp CEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTTC-
T ss_pred cEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcCC-
Confidence 999999999999999998 688888877653 899999999999976 443 678899999999986
Q ss_pred EEEEeccCC-CCCHHHHHHHHHHHHhCCccc
Q 028362 156 YYIECSSKT-QQNVKAVFDAAIKVVIKPPQK 185 (210)
Q Consensus 156 ~~~~~Sa~~-~~~i~~~~~~i~~~~~~~~~~ 185 (210)
+++++||++ +.|++++|+++.+.+.+...+
T Consensus 166 ~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 166 DFFDVSANPPGKDADAPFLSIATTFYRNYED 196 (208)
T ss_dssp EEEECCC-------CHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 899999999 999999999999988765433
No 74
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.2e-32 Score=207.23 Aligned_cols=167 Identities=38% Similarity=0.610 Sum_probs=143.5
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCE----------EEEEEEEeCCCccccccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGT----------TVNLGLWDTAGQEDYNRL 72 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~i~D~~G~~~~~~~ 72 (210)
...+.+||+|+|++|||||||+++|..+.+...+.++.+.++.. .+.+++. .+.+.+||+||++++...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 34577999999999999999999999998877777777665533 4555555 789999999999999999
Q ss_pred CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (210)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
+..+++.+|++|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++.
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~ 169 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELAD 169 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHH
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHH
Confidence 99999999999999999999999987 68888777654 6899999999999976544 67888999999
Q ss_pred HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 151 QIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.++. +++++||+++.|++++|+++.+.+.+.
T Consensus 170 ~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 170 KYGI-PYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp HTTC-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HCCC-cEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9886 899999999999999999999988754
No 75
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=1.7e-31 Score=197.58 Aligned_cols=165 Identities=22% Similarity=0.398 Sum_probs=130.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC--CCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc-ccccCcccccCccE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGADV 82 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~ 82 (210)
...+||+|+|++|||||||+++|.+. .+...+.++..+.+...+.+++..+.+.+||++|++. ++.++..+++.+++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 45799999999999999999999953 3444433333344455677899999999999999876 56677888899999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
+++|||++++.+++.+ ..|...+.... +++|+++|+||+|+...+. +..+++..++...+. +++++
T Consensus 84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~ 151 (192)
T 2cjw_A 84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAVVFDX-KFIET 151 (192)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc----------ccHHHHHHHHHHhCC-ceEEe
Confidence 9999999999999987 67777665532 5799999999999976543 677788888888875 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHhCC
Q 028362 161 SSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
||++|.||+++|+++++.+...
T Consensus 152 SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 152 SAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999988543
No 76
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-31 Score=198.63 Aligned_cols=163 Identities=33% Similarity=0.636 Sum_probs=141.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
...++|+|+|++|||||||+++|..+.+...+.++.+.++. ..+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999999999888777888776654 45677888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
+|||++++.++..+ ..|+..+.... .++|+++|+||+|+.... +..+++..++..++. +++++||+
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 164 (213)
T 3cph_A 98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAK 164 (213)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSSCC-----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccc-----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999887 68888777665 579999999999994332 577888889988886 89999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028362 164 TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~ 181 (210)
++.|++++|+++.+.+.+
T Consensus 165 ~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 165 NDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTBSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 77
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=2.4e-32 Score=202.03 Aligned_cols=165 Identities=23% Similarity=0.278 Sum_probs=133.9
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------CCceeeeeeE-EE-EECCEEEEEEEEeCCCccccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-----------IPTVFDNFSA-NV-VAEGTTVNLGLWDTAGQEDYN 70 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~-~~-~~~~~~~~~~i~D~~G~~~~~ 70 (210)
.....+||+|+|++|||||||++.+. +.+...+ .||.+.++.. .. .+++..+.+.+||+||+++++
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 34577999999999999999996555 4444442 3344444322 23 456788999999999999999
Q ss_pred ccCcccccCccEEEEEEECC------ChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHH
Q 028362 71 RLRPLSYRGADVFVLAFSLV------SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 144 (210)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 144 (210)
.++..+++++|++|+|||++ +.+++..+ ..|+..+....+++|+++|+||+|+... +..++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~ 155 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEM 155 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHH
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHH
Confidence 99999999999999999999 55677776 6787777555578999999999999764 67888
Q ss_pred HHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 145 GEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 145 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
+.+++..++..+++++||+++.|++++|+++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 156 VRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp HHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 99999888865899999999999999999999988754
No 78
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.98 E-value=9.1e-31 Score=208.54 Aligned_cols=177 Identities=60% Similarity=1.051 Sum_probs=151.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
...++|+++|.+|||||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 35689999999999999999999999998888899888887778889999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
|||++++.++..+...|+..+....+++|+++|+||+|+........ .......+..+++..++...+..+++++||+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 99999999999985578888887777899999999999975421000 0001123778899999999987689999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028362 164 TQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~~ 182 (210)
++.|++++|+++.+.+.++
T Consensus 313 ~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHhcC
Confidence 9999999999999988764
No 79
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.98 E-value=1.5e-33 Score=209.44 Aligned_cols=166 Identities=31% Similarity=0.616 Sum_probs=133.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
....+||+|+|.+|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 356799999999999999999999998887776676665553 4567788999999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+++..++..++. +++++||
T Consensus 110 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA 177 (199)
T 3l0i_B 110 IVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSA 177 (199)
T ss_dssp EECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEEC
Confidence 999999999999998 78988887765 5899999999999976544 445566778888886 7899999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028362 163 KTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~ 182 (210)
+++.|++++|+++.+.+.+.
T Consensus 178 ~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 178 KNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp ---HHHHHHHHHHTTTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999998877543
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=6.5e-32 Score=203.80 Aligned_cols=167 Identities=28% Similarity=0.468 Sum_probs=141.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
.....+||+++|.+|||||||+++|..+.+...+.++.+.++ .....+++..+.+.+||+||++.+..++..+++++++
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 345779999999999999999999887776666667775444 4456678899999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (210)
+++|||++++.++..+ ..|+..+....+++|+++|+||+|+..... ..+...++...+. +++++||
T Consensus 91 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------------~~~~~~~~~~~~~-~~~~~Sa 156 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISA 156 (221)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS------------CGGGCCHHHHHTC-EEEECBG
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc------------cHHHHHHHHHcCC-EEEEEeC
Confidence 9999999999999998 789988888777899999999999976432 1244556777776 8999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCcc
Q 028362 163 KTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 163 ~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
+++.|++++|.++.+.+.....
T Consensus 157 ~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 157 KSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp GGTBTTTHHHHHHHHHHHTCTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999876543
No 81
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=2e-31 Score=200.52 Aligned_cols=168 Identities=27% Similarity=0.439 Sum_probs=138.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEE-CCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 82 (210)
....+||+|+|.+|||||||+++|.++.+...+.++.+..+... ... ++..+.+.+||+||++.+..++..++.++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 34679999999999999999999998888776667665544332 222 3455889999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (210)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (210)
+|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... +..+.+..++...+. +++++|
T Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 155 (218)
T 4djt_A 88 AILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEIS 155 (218)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEEB
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEEe
Confidence 9999999999999987 68888777655 4699999999999976644 777888888888876 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCcc
Q 028362 162 SKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
|+++.|++++|+++.+.+.....
T Consensus 156 a~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 156 AKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TTTTBTTTHHHHHHHHHHHCCTT
T ss_pred cCCCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999977543
No 82
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=1e-33 Score=211.10 Aligned_cols=174 Identities=62% Similarity=1.068 Sum_probs=145.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.+.+||+++|.+|||||||+++|..+.+...+.++....+...+.+++..+.+.+||+||++++...+..+++++|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 57799999999999999999999998888888888877776667778888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
|||++++.++..+...|+..+....+++|+++|+||+|+......... ......+..+++..+++..+..+++++||+
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~ 187 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
Confidence 999999999998755888888876678999999999999765321110 001112566777888888876688999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028362 164 TQQNVKAVFDAAIKVV 179 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~ 179 (210)
++.|++++|+++.+.+
T Consensus 188 ~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 188 TQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999998765
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=5.5e-31 Score=195.15 Aligned_cols=167 Identities=15% Similarity=0.146 Sum_probs=124.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
....+||+|+|.+|||||||+++|.++.+.. .+.||.+..+. .+ +...+.+.+||+||++++..++..+++++|++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 4567899999999999999999999999887 77788764432 22 34457889999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC---------CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHH-HHcC
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS---------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-KQIG 153 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (210)
|+|||++++.++..+ ..|+..+.... +++|+++|+||+|+..... ...+......... +..+
T Consensus 91 i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 91 IFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-------AAELVEILDLTTLMGDHP 162 (199)
T ss_dssp EEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-------HHHHHHHHTHHHHHTTSC
T ss_pred EEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-------HHHHHHHhcchhhccCCe
Confidence 999999999999998 55555444321 2799999999999976521 0001111111111 2234
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
.+++++||+++.|++++|+++.+.+....
T Consensus 163 -~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 163 -FVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp -EEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred -eEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999887553
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.7e-30 Score=192.99 Aligned_cols=156 Identities=18% Similarity=0.231 Sum_probs=119.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.+.++|+++|++|||||||+++|.++.+. .+.||.+.. ...+.+++ +.+.+||+||++.++.++..+++++|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45689999999999999999999988764 455666554 23455666 788999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc-----------
Q 028362 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----------- 152 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 152 (210)
|+|+++++++.++ ..|+..+... ..++|+++|+||+|+... +..+++.++....
T Consensus 99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
T 1f6b_A 99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL 165 (198)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCccccccccccccc
Confidence 9999999999988 5666655443 268999999999999752 5666777665532
Q ss_pred -----CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 153 -----GASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 153 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
...+++++||++|.|++++|+++.+.
T Consensus 166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 23579999999999999999999764
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=6.7e-30 Score=188.58 Aligned_cols=156 Identities=17% Similarity=0.234 Sum_probs=123.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.+.+||+++|++|||||||++++.++.+. .+.||.+.. ...+.+++ +.+.+||+||++.++.++..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45689999999999999999999998875 445666554 33455666 788999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc-----------
Q 028362 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----------- 152 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 152 (210)
|||+++++++.++ ..|+..+... ..+.|+++|+||+|+... +..+++.+.....
T Consensus 97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 1m2o_B 97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQ 163 (190)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSS
T ss_pred EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCcccccccccccc
Confidence 9999999999998 5666555432 268999999999999752 4555555554321
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 153 GASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 153 ~~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
...+++++||+++.|++++|+++.+.
T Consensus 164 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 164 RPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 23479999999999999999998754
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=2.6e-30 Score=190.39 Aligned_cols=162 Identities=23% Similarity=0.287 Sum_probs=125.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
.++.+||+|+|++|||||||+++|.++.+...+.||.+..+.. +.. ..+.+.+||+||++++..++..+++++|++|
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEe--CCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 3567999999999999999999999998887778887766542 333 3478899999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHH-hccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEEE
Q 028362 85 LAFSLVSRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYYI 158 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (210)
+|||+++++++..+ ..|+..+ .... .++|+++|+||+|+.... ..++....... ....+++
T Consensus 96 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 162 (188)
T 1zd9_A 96 YMVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGAL------------DEKELIEKMNLSAIQDREICCY 162 (188)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCEEEE
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCC------------CHHHHHHHhChhhhccCCeeEE
Confidence 99999999999988 4555544 3322 689999999999997542 22222211111 1124789
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
++||+++.|++++|+++.+.+...
T Consensus 163 ~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 163 SISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp ECCTTTCTTHHHHHHHHHHTCC--
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999877543
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=5.1e-30 Score=185.38 Aligned_cols=159 Identities=16% Similarity=0.207 Sum_probs=123.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
++.+||+++|++|||||||+++|..+.+.. +.||.+... ..+.++ .+.+.+||+||++.++..+..+++++|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV-ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE-EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccce-EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 467999999999999999999999888753 466664332 334445 4778899999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHH-HHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH-----HHHcCCcEEE
Q 028362 86 AFSLVSRASYENVLKKWIP-ELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL-----RKQIGASYYI 158 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~-~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 158 (210)
|+|++++.++... ..|+. .+.... .+.|+++|+||+|+.... ...+.... +...+ .+++
T Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 146 (171)
T 1upt_A 81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAM------------TSSEMANSLGLPALKDRK-WQIF 146 (171)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTGGGCTTSC-EEEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCC------------CHHHHHHHhCchhccCCc-eEEE
Confidence 9999999999887 45544 444332 689999999999997642 12222211 12223 3789
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
++||+++.|++++|+++.+.+.++
T Consensus 147 ~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 147 KTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred ECcCCCCcCHHHHHHHHHHHHhhc
Confidence 999999999999999999988654
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=2.2e-29 Score=184.83 Aligned_cols=160 Identities=17% Similarity=0.239 Sum_probs=125.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
++.+||+++|++|||||||++++.++. ...+.||.+... ..+.+++ +.+.+||+||+++++..+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI-KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE-EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce-EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 577999999999999999999999887 566677776432 2344454 778899999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhcc-C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEEEE
Q 028362 86 AFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYYIE 159 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 159 (210)
|+|++++.++.++ ..|+..+... . .+.|+++|+||+|+.... ..++..+.... ....++++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
T 1ksh_A 92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHHWRIQG 158 (186)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCEEEEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCceEEEE
Confidence 9999999999987 4555544433 2 689999999999997642 22333322211 12248899
Q ss_pred eccCCCCCHHHHHHHHHHHHhCC
Q 028362 160 CSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
+||+++.|++++|+++.+.+.+.
T Consensus 159 ~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 159 CSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHTC
T ss_pred eeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999988654
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=8.4e-30 Score=187.35 Aligned_cols=162 Identities=17% Similarity=0.215 Sum_probs=122.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
++.+||+++|++|||||||+++|..+.+. .+.||.+.. ...+.+++ +.+.+||+||+++++..+..+++++|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 56799999999999999999999988776 556665533 23344554 788999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH-----cCCcEEE
Q 028362 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-----IGASYYI 158 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 158 (210)
|+|+++++++..+ ..|+..+... ..+.|+++|+||+|+... ...++..+.... .+ .+++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~~~ 155 (187)
T 1zj6_A 90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQ-WHIQ 155 (187)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSC-EEEE
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCC------------CCHHHHHHHhChhhhcCCC-cEEE
Confidence 9999999999998 5666655544 268999999999999753 234444433322 23 3889
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCCccc
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKPPQK 185 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 185 (210)
++||+++.|++++|+++.+.+......
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHCC----
T ss_pred EccCCCCcCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999998766443
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=186.76 Aligned_cols=161 Identities=16% Similarity=0.246 Sum_probs=124.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
..+.+||+++|.+|||||||+++|.++. +...+.+|.+.. ...+.+++ +.+.+||+||+++++..+..+++++|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE-EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee-EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 3467999999999999999999999887 556666776533 23344454 7889999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccC----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH--Hc--CCc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK--QI--GAS 155 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~ 155 (210)
++|+|++++.++..+ ..|+..+.... .++|+++|+||+|+... ...+++.++.. .+ ...
T Consensus 95 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 2h57_A 95 IFVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPW 161 (190)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCce
Confidence 999999999999987 45555544332 47999999999999754 34555555553 11 124
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 156 YYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
+++++||+++.|++++|+++.+.+.+
T Consensus 162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 162 HICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 88999999999999999999987754
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=7.4e-31 Score=188.65 Aligned_cols=155 Identities=16% Similarity=0.201 Sum_probs=118.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 88 (210)
+||+++|++|||||||+++|..+.+.. +.||.+.. ...+. ...+.+.+||+||+++++.++..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999888754 46666532 22232 244788999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH-----HcCCcEEEEec
Q 028362 89 LVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYIECS 161 (210)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~S 161 (210)
+++++++..+ ..|+..+... .++.|+++|+||+|+.... ...+...... ..+ .+++++|
T Consensus 77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~S 142 (164)
T 1r8s_A 77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRN-WYIQATC 142 (164)
T ss_dssp TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCC-EEEEECB
T ss_pred CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCcc-EEEEEcc
Confidence 9999999987 5665554432 2689999999999996542 2222221111 122 3789999
Q ss_pred cCCCCCHHHHHHHHHHHHhC
Q 028362 162 SKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 162 a~~~~~i~~~~~~i~~~~~~ 181 (210)
|+++.|++++|+++.+.+.+
T Consensus 143 a~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 143 ATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp TTTTBTHHHHHHHHHHHC--
T ss_pred cCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999988754
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=2e-29 Score=184.49 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=120.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
..+.+||+++|.+|||||||+++|..+.+ ..+.++.+..+ ..+.+++ +.+.+||+||+++++.++..+++++|+++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 34679999999999999999999999887 44455555332 3444555 78899999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEE
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYI 158 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 158 (210)
+|+|+++++++..+ ..|+..+... ..++|+++|+||+|+... ...++..+..... ...+++
T Consensus 94 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~ 160 (181)
T 2h17_A 94 VVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQWHIQ 160 (181)
T ss_dssp EEEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSCEEEE
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccC------------CCHHHHHHHhCcccccCCceEEE
Confidence 99999999999987 4555544433 268999999999999653 2333333332111 123789
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 028362 159 ECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~ 178 (210)
++||+++.|++++|+++.+.
T Consensus 161 ~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 161 ACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ECBTTTTBTHHHHHHHHHTC
T ss_pred EccCCCCcCHHHHHHHHHhh
Confidence 99999999999999998764
No 93
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.96 E-value=2.9e-28 Score=180.98 Aligned_cols=164 Identities=31% Similarity=0.570 Sum_probs=139.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
...++|+|+|++|||||||++++.+..+...+.|+.+..+ ...+.+++..+.+.+||++|++.++..+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 4579999999999999999999999988777778776554 446778999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
+|+|+++..++.++ ..|+..+.... .+.|+++|+||+|+..... +..+++..++...+. +++++||+
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal 150 (199)
T 2f9l_A 83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL 150 (199)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999886 67877665543 5789999999999976544 567788899988886 88899999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028362 164 TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~~~ 181 (210)
++.|++++|+++.+.+.+
T Consensus 151 ~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=4.3e-30 Score=189.92 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=116.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
.++.+||+++|++|||||||+++|..+.+.. +.||.+.. ...+..++ +.+.+||+||+++++..+..+++++|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEE-EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCcee-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3567999999999999999999999887653 34444422 22333343 78899999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhcc-C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH-HHH---cCCcEEE
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL-RKQ---IGASYYI 158 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~ 158 (210)
+|||+++++++..+ ..|+..+... . .++|+++|+||+|+.... ..++.... ... ....+++
T Consensus 102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~ 168 (192)
T 2b6h_A 102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAM------------PVSELTDKLGLQHLRSRTWYVQ 168 (192)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCEEEE
T ss_pred EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCceEEE
Confidence 99999999999987 5666554432 2 589999999999996542 22222211 111 0123789
Q ss_pred EeccCCCCCHHHHHHHHHHHHhC
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
++||+++.|++++|+++.+.+.+
T Consensus 169 ~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 169 ATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp ECBTTTTBTHHHHHHHHHHHTTT
T ss_pred ECcCCCcCCHHHHHHHHHHHHhc
Confidence 99999999999999999988753
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=3.5e-30 Score=189.09 Aligned_cols=165 Identities=21% Similarity=0.316 Sum_probs=121.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC--CCCCCCCCceeeeeeE-EEEE---CCEEEEEEEEeCCCcccccccCcccccCcc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFSA-NVVA---EGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 81 (210)
.+||+|+|++|||||||+++|.+. .+...+.+|.+.++.. .+.+ ++..+.+.+||++|+++|..+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 489999999999999999999985 4555667777655432 2222 346788999999999999999999999999
Q ss_pred EEEEEEECCCh-hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccC---HHHHHHHHHHcCCc--
Q 028362 82 VFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT---TAQGEELRKQIGAS-- 155 (210)
Q Consensus 82 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 155 (210)
++++|||++++ .++..+ ..|+..+....++.|+++|+||+|+..... +. .+.+..++..++..
T Consensus 82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEE
T ss_pred EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcch
Confidence 99999999997 578776 788888776666899999999999975432 21 33445666556653
Q ss_pred -EEEEeccCCCC-CHHHHHHHHHHHHhCCc
Q 028362 156 -YYIECSSKTQQ-NVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 156 -~~~~~Sa~~~~-~i~~~~~~i~~~~~~~~ 183 (210)
+++++||+++. +++++++.+.+.+....
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred hheEEEecccCchhHHHHHHHHHHHHhccc
Confidence 38999999996 99999999998887643
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=8.8e-30 Score=187.46 Aligned_cols=159 Identities=19% Similarity=0.213 Sum_probs=122.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
++.+||+++|++|||||||++++..+.+.. +.||.+.. ...+..+ .+.+.+||+||+++++..+..+++++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 578999999999999999999999877643 45555432 2234444 4788899999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHH-HhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHH-----HHcCCcEEE
Q 028362 86 AFSLVSRASYENVLKKWIPE-LQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYI 158 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~-~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 158 (210)
|+|+++++++..+ ..|+.. +.... .+.|+++|+||+|+.... ...+..... ...+ .+++
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 161 (189)
T 2x77_A 96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAA------------SEAEIAEQLGVSSIMNRT-WTIV 161 (189)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhccCCc-eEEE
Confidence 9999999999987 455444 44332 689999999999997642 122222111 1123 3789
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
++||+++.|++++|+++.+.+.+.
T Consensus 162 ~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 162 KSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EccCCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999999988643
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=1.8e-29 Score=184.90 Aligned_cols=159 Identities=21% Similarity=0.266 Sum_probs=119.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.+.+||+++|++|||||||+++|.++.+. .+.||.+.. ...+.++ .+.+.+||+||++.++..+..+++++|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~-~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN-IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE-EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE-EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 57799999999999999999999987542 334444432 2234445 4788899999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHH-hccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEEEE
Q 028362 86 AFSLVSRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYYIE 159 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 159 (210)
|||+++++++..+ ..|+..+ .... .++|+++|+||+|+.... ..++..+.... ....++++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
T 1fzq_A 90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRDRVWQIQS 156 (181)
T ss_dssp EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCEEEEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC------------CHHHHHHHhCchhccCCceEEEE
Confidence 9999999999987 5665544 3322 689999999999997642 22222221111 11247899
Q ss_pred eccCCCCCHHHHHHHHHHHHhC
Q 028362 160 CSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
+||++|.|++++|+++.+.+.+
T Consensus 157 ~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 157 CSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CCTTTCTTHHHHHHHHHHTC--
T ss_pred ccCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999987754
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=1.1e-29 Score=188.26 Aligned_cols=167 Identities=13% Similarity=0.206 Sum_probs=120.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee---eEEEEE-CCEEEEEEEEeCCCcccccccC---ccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVVA-EGTTVNLGLWDTAGQEDYNRLR---PLS 76 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~i~D~~G~~~~~~~~---~~~ 76 (210)
..++.+||+++|++|||||||++++.+. +... ++.+..+ .....+ ++..+.+.+||++|+++|.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 3457799999999999999999987764 3322 2322222 112223 3567889999999999987765 789
Q ss_pred ccCccEEEEEEECCCh--hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH----
Q 028362 77 YRGADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK---- 150 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 150 (210)
+++++++|+|||++++ +++..+ ..|+..+....+++|+++|+||+|+........ ....+..+++..++.
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIE---TQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHH---HHHHHHHHHHHHHHHTTCT
T ss_pred cccCCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhhH---HHhHHHHHHHHHHHHhhhh
Confidence 9999999999999997 666665 566666655567899999999999865311000 001155566777777
Q ss_pred HcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 151 QIGASYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
..+. +++++||++ .|++++|+.+++.+
T Consensus 169 ~~~~-~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHL-SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCE-EEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCc-ceEEEEech-hhHHHHHHHHHHHh
Confidence 5554 899999999 99999999999875
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2.1e-29 Score=184.23 Aligned_cols=159 Identities=13% Similarity=0.194 Sum_probs=120.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
++.+||+++|++|||||||++++..+.+ ..+.|+.+.. ...+.+++ +.+.+||+||+++++..+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5789999999999999999999998776 4445555432 22344454 788899999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEEE
Q 028362 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIE 159 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 159 (210)
|+|++++.++..+ ..|+..+... ..+.|+++|+||+|+... ...++..+..... ...++++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~ 158 (183)
T 1moz_A 92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRSWSIVA 158 (183)
T ss_dssp EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSCEEEEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCceEEEE
Confidence 9999999999987 5666655544 368999999999999654 2333333332211 1237899
Q ss_pred eccCCCCCHHHHHHHHHHHHhC
Q 028362 160 CSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
+||+++.|++++|+++.+.+.+
T Consensus 159 ~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 159 SSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EBGGGTBTHHHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999988753
No 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=7.9e-28 Score=177.64 Aligned_cols=162 Identities=31% Similarity=0.573 Sum_probs=140.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
...++|+|+|++|||||||++++.+..+...+.|+.+.++ ...+.+++..+.+.+||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 4569999999999999999999999988877888887665 446778999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (210)
+|+|+++..+++++ ..|+..+.... .+.|+++++||+|+..... +..+++..++...+. .++++||+
T Consensus 107 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sal 174 (191)
T 1oix_A 107 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSAL 174 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999998886 67777665543 5789999999999976543 567888999998886 88899999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028362 164 TQQNVKAVFDAAIKVV 179 (210)
Q Consensus 164 ~~~~i~~~~~~i~~~~ 179 (210)
++.|++++|+++.+.+
T Consensus 175 d~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 175 DSTNVEAAFQTILTEI 190 (191)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998865
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=5.6e-29 Score=186.64 Aligned_cols=164 Identities=16% Similarity=0.128 Sum_probs=116.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCE-EEEEEEEeCCCcccccc-cCcccccCccE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQEDYNR-LRPLSYRGADV 82 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~~~ 82 (210)
..+.+||+++|++|||||||+++|..+.+...+.++...... +.+++. .+.+.+||+||+++++. ++..+++++++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 356799999999999999999999999887776555433222 445543 58899999999999987 88888999999
Q ss_pred EEEEEECCChh-HHHHHHHHHHHHHhcc---CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH------------
Q 028362 83 FVLAFSLVSRA-SYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE------------ 146 (210)
Q Consensus 83 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~------------ 146 (210)
+|+|||+++.. ++......|...+... ..++|+++|+||+|+...... ....+.+.
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~~~l~~~l~~~~~~~~~ 153 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA--------KLIQQQLEKELNTLRVTRSA 153 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH--------HHHHHHHHHHHHHHHHHCC-
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH--------HHHHHHHHHHHHHHhccchh
Confidence 99999999864 4666545566655442 357999999999999765320 00001111
Q ss_pred --------------------HHHHHcC--CcEEEEeccCCC------CCHHHHHHHHHHH
Q 028362 147 --------------------ELRKQIG--ASYYIECSSKTQ------QNVKAVFDAAIKV 178 (210)
Q Consensus 147 --------------------~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~ 178 (210)
.|+.... ..+|+++||+++ .||+++|+++.+.
T Consensus 154 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 154 APSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 1111110 458999999999 9999999999875
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=190.17 Aligned_cols=163 Identities=17% Similarity=0.287 Sum_probs=123.6
Q ss_pred CCceeEEEEECCC---------CCCHHHHHHHHHc---CCCCCCCCCce-eeeeeE---------------EEEECCEEE
Q 028362 5 ASRFIKCVTVGDG---------AVGKTCMLICYTS---NKFPTDYIPTV-FDNFSA---------------NVVAEGTTV 56 (210)
Q Consensus 5 ~~~~~kv~llG~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~---------------~~~~~~~~~ 56 (210)
..+.+||+|+|.+ |||||||+++|.. +.+...+.|++ +.++.. ...+++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4567999999999 9999999999998 55666666665 222211 112467889
Q ss_pred EEEEEe-----------------------CCCcccccccCccccc---------------------CccEEEEEEECCCh
Q 028362 57 NLGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFVLAFSLVSR 92 (210)
Q Consensus 57 ~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~ 92 (210)
.+.+|| ++|+++|+.++..+++ ++|++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 999999 7788888888888888 79999999999998
Q ss_pred --hHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH
Q 028362 93 --ASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 168 (210)
Q Consensus 93 --~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (210)
++++.+ ..|+..+... ..++|+++|+||+|+..... + +++..++......+++++||+++.|+
T Consensus 176 ~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~~~~e~SAk~g~gv 242 (255)
T 3c5h_A 176 MNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I--RDAHTFALSKKNLQVVETSARSNVNV 242 (255)
T ss_dssp ---CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----------H--HHHHHHHHTSSSCCEEECBTTTTBSH
T ss_pred chhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH----------H--HHHHHHHHhcCCCeEEEEECCCCCCH
Confidence 999987 6888777654 26899999999999965432 2 57777777642348999999999999
Q ss_pred HHHHHHHHHHHh
Q 028362 169 KAVFDAAIKVVI 180 (210)
Q Consensus 169 ~~~~~~i~~~~~ 180 (210)
+++|+++++.+.
T Consensus 243 ~elf~~l~~~l~ 254 (255)
T 3c5h_A 243 DLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 103
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=4.2e-27 Score=171.14 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=117.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 83 (210)
.++.++|+++|++|||||||+++|.++.+...+.++....+ ...+..++. .+.+||+||++++..++..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 35779999999999999999999999888776666554333 234556664 467899999999999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC--------Cc
Q 028362 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--------AS 155 (210)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 155 (210)
++|+|++++...... .++..+.. .++|+++|+||+|+.... .++........+ ..
T Consensus 83 i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEAN-------------PDRVMQELMEYNLVPEEWGGDT 145 (178)
T ss_dssp EEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSC-------------HHHHHHHHTTTTCCBTTTTSSE
T ss_pred EEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCC-------------HHHHHHHHHhcCcChhHcCCcc
Confidence 999999884322221 12222222 478999999999996531 122222222222 14
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 156 YYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
+++++||+++.|++++|+++.+.+...
T Consensus 146 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 146 IFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 899999999999999999999877643
No 104
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=6.7e-29 Score=195.21 Aligned_cols=165 Identities=15% Similarity=0.169 Sum_probs=120.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccc---cCcccccCccEE
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR---LRPLSYRGADVF 83 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~~ 83 (210)
||+++|++|||||||++++..+.+.. ...||.+..+.. ++ ..+.+++|||+||++|+. .+..++++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999888654332 245666655542 22 348899999999999974 357899999999
Q ss_pred EEEEECCCh--hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEE
Q 028362 84 VLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYY 157 (210)
Q Consensus 84 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 157 (210)
|+|||++++ +.+... ..|+..+....+++|++++|||+|+........ ....+..++++++++. +++ +|
T Consensus 77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~---~~R~V~~~~~~~la~~~~~~~~i-~f 151 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVD---AQRDIMQRTGEELLELGLDGVQV-SF 151 (331)
T ss_dssp EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHH---HHHHHHHHHHHTTSSSSCSCCCE-EE
T ss_pred EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhhhh---HHHHhhHHHHHHHHhhcccccCc-eE
Confidence 999999998 333332 344555555567899999999999975421000 0011556677777775 454 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362 158 IECSSKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
++|||++ .||+++|..+++.+.....
T Consensus 152 ~eTSAkd-~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 152 YLTSIFD-HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp ECCCSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred EEeccCC-CcHHHHHHHHHHHHHhhHH
Confidence 9999998 6899999999998876543
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=5e-27 Score=169.29 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=111.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccccc------Cccccc-
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSYR- 78 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~~- 78 (210)
+.++|+++|++|||||||+++|.+..+.....|+..... ...+.+++ ..+.+||+||++.+... ...+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 358999999999999999999998776544445433222 23344455 57889999999887533 244554
Q ss_pred -CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362 79 -GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (210)
Q Consensus 79 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
+++++++|+|+++.+.. ..|+..+.. .++|+++|+||+|+..... +.. ++..+++.++. ++
T Consensus 80 ~~~~~~i~v~D~~~~~~~----~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~-~~ 141 (165)
T 2wji_A 80 EKPDLVVNIVDATALERN----LYLTLQLME--MGANLLLALNKMDLAKSLG----------IEI-DVDKLEKILGV-KV 141 (165)
T ss_dssp HCCSEEEEEEETTCHHHH----HHHHHHHHH--TTCCEEEEEECHHHHHHTT----------CCC-CHHHHHHHHTS-CE
T ss_pred CCCCEEEEEecCCchhHh----HHHHHHHHh--cCCCEEEEEEchHhccccC----------hhh-HHHHHHHHhCC-CE
Confidence 89999999999886543 345555544 3789999999999976432 221 35677777775 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 028362 158 IECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 158 ~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
+++||+++.|++++|+++.+.+
T Consensus 142 ~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 142 VPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp EECBGGGTBSHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998875
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=5.9e-28 Score=192.37 Aligned_cols=161 Identities=16% Similarity=0.202 Sum_probs=117.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
++.+||+|+|.+|||||||+++|..+.+... .||....+. .+.. ..+.+.+||+||++.|..++..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~-~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE-EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE-EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 3568999999999999999999998876443 344433322 2333 34788999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEEEe
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIEC 160 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 160 (210)
|||++++.++..+...|...+.... +++|+++|+||+|+.... ..++........ ...+++++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~v 306 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNWYIQAT 306 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTCTTCCSSCEEEEEC
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc------------CHHHHHHHhchhhhhcCCCEEEEE
Confidence 9999999999988555555655543 689999999999997643 222222211111 12478999
Q ss_pred ccCCCCCHHHHHHHHHHHHhCC
Q 028362 161 SSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
||+++.||+++|+++.+.+.+.
T Consensus 307 SAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 307 CATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp BTTTTBTHHHHHHHHHHHHTC-
T ss_pred ECCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999988654
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=2.8e-27 Score=186.87 Aligned_cols=169 Identities=18% Similarity=0.242 Sum_probs=129.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--C-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc-----cccCccccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--P-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-----NRLRPLSYR 78 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~ 78 (210)
..+||+++|++|||||||++++.++.. . ..+.+|.+..+. ...+.+ .+.+.+||+||++.+ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 458999999999999999999998732 2 234556555544 233433 588999999999998 788888999
Q ss_pred CccEEEEEEECCChhHHHHHHHHHHH---HHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-
Q 028362 79 GADVFVLAFSLVSRASYENVLKKWIP---ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA- 154 (210)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~---~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (210)
++|++|+|||++++++++++ ..|.. .+....+++|+++|+||+|+...... .....+..+++.+++..++.
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r----~~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR----EELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH----HHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhh----hHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999887 55544 44444578999999999999762110 00000345788899998873
Q ss_pred -cEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 155 -SYYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 155 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
.+++++||++ .++.++|..+++.+....
T Consensus 155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~~~ 183 (307)
T 3r7w_A 155 NLIGFPTSIWD-ESLYKAWSQIVCSLIPNM 183 (307)
T ss_dssp SCEEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred CeEEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence 6999999999 899999999998776543
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=9.9e-27 Score=194.97 Aligned_cols=164 Identities=16% Similarity=0.182 Sum_probs=122.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 85 (210)
.+.+||+|+|.+|||||||+++|..+.+.. +.||.+..+.. + ....+.+.+|||+|++.++.++..+++++|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~-~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET-V--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEE-E--ESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEEE-E--EeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 467999999999999999999999888643 45666554332 2 2344788999999999999999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEEEEe
Q 028362 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYYIEC 160 (210)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 160 (210)
|||++++.++.++...|...+.... .++|++||+||+|+.... ...+....... ....+++++
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 463 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------------KPHEIQEKLGLTRIRDRNWYVQPS 463 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC------------CHHHHHHHTTCTTCCSSCEEEEEC
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC------------CHHHHHHHhchhhhhcCCeEEEEE
Confidence 9999999999998444444444333 689999999999997542 22222221111 012368999
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCccc
Q 028362 161 SSKTQQNVKAVFDAAIKVVIKPPQK 185 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~~~~~~~~~ 185 (210)
||++|.||+++|++|.+.+......
T Consensus 464 SA~~g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 464 CATSGDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp BTTTTBTHHHHHHHHHHHCC-----
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999988665443
No 109
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=5.7e-27 Score=177.58 Aligned_cols=166 Identities=10% Similarity=0.045 Sum_probs=114.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccc---------ccCcc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN---------RLRPL 75 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~ 75 (210)
.+.++|+|+|.+|||||||+++|.++.+.....+...... .......+ +.+.+||+||+.... ..+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4569999999999999999999998876422222211111 11222333 678899999994311 11223
Q ss_pred cccCccEEEEEEECCChhHHHHH-HHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCH---HHHHHHHHH
Q 028362 76 SYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT---AQGEELRKQ 151 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 151 (210)
++..+|++|+|||++++.++... ...|+..+....+++|+++|+||+|+..... +.. +.+..++..
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~ 174 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILDN 174 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHHH
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHHh
Confidence 46788999999999998776421 2356666665546899999999999976543 333 355666666
Q ss_pred cC-CcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 152 IG-ASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 152 ~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
.+ ..+++++||+++.|++++|+++.+.+....
T Consensus 175 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 175 VKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 65 248999999999999999999999887543
No 110
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=7.4e-27 Score=197.23 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=124.6
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEE---------EECCEEEEEEEEeCCCcccccccCc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV---------VAEGTTVNLGLWDTAGQEDYNRLRP 74 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~D~~G~~~~~~~~~ 74 (210)
.....+||+++|.+|||||||++++.++.+...+.||.+.++.... ..++..+.+.+||+||++.+..++.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3457799999999999999999999999988888888877665332 1133468899999999999999999
Q ss_pred ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (210)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (210)
.+++.++++|+|+|+++.+.. ..|+..+....++.|+++|+||+|+..... +..+++..++...+.
T Consensus 117 ~~l~~~d~ii~V~D~s~~~~~----~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~ 182 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN 182 (535)
T ss_dssp HHHHSSEEEEEEECGGGGGGH----HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT
T ss_pred HHccCCcEEEEEEeCCCchhH----HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC
Confidence 999999999999999776433 678888887777899999999999976554 677788888888886
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 155 SYYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
+++++||+++.|++++++++.+.+....
T Consensus 183 -~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 183 -RFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp -CEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred -ceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 7999999999999999999999987654
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=4.4e-27 Score=172.78 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=118.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCC-----------cccccccCcccc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG-----------QEDYNRLRPLSY 77 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~ 77 (210)
+||+++|++|||||||+++|.++.+...+.|+..... ...... .+.+||+|| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~-~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI-IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC-EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee-EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 6999999999999999999999888766666543221 122223 578899999 666777777777
Q ss_pred cC-ccEEEEEEECCChhHHHHHHHHHHHH---------Hhcc-CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH
Q 028362 78 RG-ADVFVLAFSLVSRASYENVLKKWIPE---------LQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 146 (210)
Q Consensus 78 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~---------~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 146 (210)
+. ++++++|+++.|+.++.++...|... +... ..++|+++|+||+|+.... .+.+.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~ 143 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEVIN 143 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHHHH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHHHH
Confidence 77 88888888888888887765566542 1211 1579999999999996541 45677
Q ss_pred HHHHHcCCc------EEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 147 ELRKQIGAS------YYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 147 ~~~~~~~~~------~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
.++..++.. +++++||+++.|++++|+++.+.+.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 144 FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 788888762 4799999999999999999999886553
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=5.1e-26 Score=166.99 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=118.4
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeee-eeEEEEECCEEEEEEEEeCCCcccccc------cCccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNR------LRPLS 76 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~ 76 (210)
+..+.++|+++|++|||||||+++|.+..+.....|+.... ....+..++ +.+.+||+||++.+.. ++..+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence 44577999999999999999999999876544434443322 233444555 6788999999988752 34445
Q ss_pred cc--CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362 77 YR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (210)
Q Consensus 77 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (210)
+. .++++++|+|.++. +.. ..|+..+.. .+.|+++|+||+|+..... +. ..+..+++.++.
T Consensus 81 ~~~~~~~~~i~v~d~~~~---~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~ 143 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATAL---ERN-LYLTLQLME--MGANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV 143 (188)
T ss_dssp HHHHCCSEEEEEEEGGGH---HHH-HHHHHHHHT--TTCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS
T ss_pred HhccCCCEEEEEecchhH---HHH-HHHHHHHHh--cCCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC
Confidence 54 58999999998764 333 456655554 4789999999999976542 22 345677777786
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 155 SYYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
+++++||+++.|++++|+++.+.+....
T Consensus 144 -~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 144 -KVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp -CEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred -CeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999887654
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=2.1e-26 Score=169.97 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=106.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEECCEEEEEEEEeCCC----------cccccccC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAG----------QEDYNRLR 73 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G----------~~~~~~~~ 73 (210)
....++|+|+|.+|||||||+++|.++.+.....++.+.+.... ...++ .+.+||+|| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34679999999999999999999998876555555554333222 22333 578899999 66777777
Q ss_pred cccccCc---cEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccC--HHHHHHH
Q 028362 74 PLSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT--TAQGEEL 148 (210)
Q Consensus 74 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~ 148 (210)
..+++.+ +++++|+|++++.++... .+...+.. .+.|+++|+||+|+..... +. .+++.+.
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~ 162 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGK----------WDKHAKVVRQT 162 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG----------HHHHHHHHHHH
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHH----------HHHHHHHHHHH
Confidence 7777766 999999999988777653 23333333 5789999999999976542 21 1222221
Q ss_pred HHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 149 RKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 149 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
.......+++++||+++.|++++|+++.+.+.
T Consensus 163 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 163 LNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 11122358999999999999999999998764
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=3.4e-26 Score=163.63 Aligned_cols=150 Identities=21% Similarity=0.185 Sum_probs=104.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc-------cccCcccccC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-------NRLRPLSYRG 79 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 79 (210)
.||+++|++|||||||++++.++.+. ....++...........++. .+.+||+||+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987643 22222222333344555664 6788999999873 3345557889
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+..... ++.+++ .++..++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~--------------~~~~~~-~~~~~~~~~ 140 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHEL--------------YLGPLY-GLGFGDPIP 140 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGGG--------------GCGGGG-GGSSCSCEE
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccchH--------------hHHHHH-hCCCCCeEE
Confidence 999999999998644332 223333333 4689999999999976521 223334 456557899
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 028362 160 CSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~ 179 (210)
+||+++.|++++|+++.+.+
T Consensus 141 ~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 141 TSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CBTTTTBSHHHHHHHHHHHC
T ss_pred EecccCCChHHHHHHHHHhC
Confidence 99999999999999998864
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=5e-26 Score=165.26 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=109.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC--------ccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 76 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 76 (210)
+.++|+|+|.+|||||||+++|.+..+. ..+.++....+...+.+++. .+.+||+||++++.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999987642 23333333333445666764 47789999997643211 135
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
++.+|++++|+|++++.++.. ..|+..+.... .++|+++|+||+|+..... . ++...+ .
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~-------~~~~~~-~ 140 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETL----------G-------MSEVNG-H 140 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC----------E-------EEEETT-E
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchh----------h-------hhhccC-C
Confidence 789999999999999887753 35666655544 5799999999999964321 0 011123 4
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 156 YYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
+++++||+++.|++++|+++.+.+..
T Consensus 141 ~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 141 ALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 88999999999999999999887643
No 116
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=4.4e-25 Score=174.32 Aligned_cols=165 Identities=15% Similarity=0.108 Sum_probs=124.4
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc----------c
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN----------R 71 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~ 71 (210)
++.+.-.|+++|.+|||||||+|+|.+..+.. ....++..........+ ..+.+.+|||||+..+. .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence 45677899999999999999999999987642 22222222222222333 14678899999996654 4
Q ss_pred cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (210)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (210)
.+..+++.+|++++|+|++++.+..+. ..|++.+.. .++|+++|+||+|+..... ........+...
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~--~~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~~ 151 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKP--LNKPVIVVINKIDKIGPAK----------NVLPLIDEIHKK 151 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGG--GCCCEEEEEECGGGSSSGG----------GGHHHHHHHHHH
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHh--cCCCEEEEEECccCCCCHH----------HHHHHHHHHHHh
Confidence 555678899999999999998887775 566777776 4689999999999973322 466777778887
Q ss_pred cC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 152 IG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 152 ~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
++ ..+++++||+++.|++++|+++.+.+...
T Consensus 152 ~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 152 HPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp CTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred ccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 74 45899999999999999999999988643
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=3.6e-25 Score=170.60 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=115.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccC------cccc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLR------PLSY 77 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~ 77 (210)
..+.++|+++|++|||||||+++|.+..+.....|...... ...+...+ ..+.+||+||+..+...+ ..++
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 35679999999999999999999998765433334332222 22333334 678899999999887644 3444
Q ss_pred --cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362 78 --RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (210)
Q Consensus 78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
..+|++++|+|+++.++... |...+.. .++|+++|+||+|+..... +. .+...++..++.
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~~~----~~~~l~~--~~~pvilv~NK~Dl~~~~~----------i~-~~~~~l~~~lg~- 141 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQSLY----LLLEILE--MEKKVILAMTAIDEAKKTG----------MK-IDRYELQKHLGI- 141 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHHHH----HHHHHHT--TTCCEEEEEECHHHHHHTT----------CC-BCHHHHHHHHCS-
T ss_pred hhcCCCEEEEEeCCCchhhHHH----HHHHHHh--cCCCEEEEEECcCCCCccc----------hH-HHHHHHHHHcCC-
Confidence 58999999999998765432 3333333 3799999999999976543 22 236777888886
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 156 YYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
+++++||+++.|++++|+++.+.+.
T Consensus 142 ~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 142 PVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 8999999999999999999999875
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=1.9e-25 Score=164.55 Aligned_cols=162 Identities=16% Similarity=0.124 Sum_probs=112.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCC----------cccccccCc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG----------QEDYNRLRP 74 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~ 74 (210)
....+||+++|++|||||||+++|.++.+. ...++.+.+........+ ..+.+||+|| ++.+..++.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 345689999999999999999999988732 223443333322222112 2467899999 666666666
Q ss_pred ccccCc---cEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362 75 LSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (210)
Q Consensus 75 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (210)
.+++.+ +++++|+|.+++.+.... .+...+.. .++|+++|+||+|+..... .....+++..++..
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS--LNIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVFSK 164 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG--------HHHHHHHHHHHHHS
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEEChhcCChHH--------HHHHHHHHHHHHhh
Confidence 676665 999999999876443322 22222222 2689999999999975421 01344566677776
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 152 IGASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 152 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
.+..+++++||+++.|++++|+++.+.+.+
T Consensus 165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 165 YGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 665689999999999999999999988753
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=3.6e-25 Score=171.70 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=112.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccc------cCccccc--
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSYR-- 78 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~-- 78 (210)
..++|+++|++|||||||+|+|.+........|..... .....+.. .+.+.+||+||+..+.. ++..++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~-~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE-RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS-CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE-EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 35899999999999999999999876433333422211 12223344 56789999999988863 3445554
Q ss_pred CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (210)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
.+|++++|+|+++.++.. .|...+.. .++|+++|+||+|+..... +. .+...++..++. +++
T Consensus 80 ~~d~vi~V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~vi 141 (272)
T 3b1v_A 80 RADSILNVVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PVV 141 (272)
T ss_dssp CCSEEEEEEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CEE
T ss_pred CCCEEEEEecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CEE
Confidence 699999999998876543 34334333 4799999999999976542 22 345677788886 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHh
Q 028362 159 ECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 159 ~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
++||+++.|++++|+++.+.+.
T Consensus 142 ~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 142 ATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp ECBTTTTBSHHHHHHHHHHSCT
T ss_pred EEEccCCCCHHHHHHHHHHHHh
Confidence 9999999999999999988664
No 120
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=1.5e-24 Score=170.48 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=111.4
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCC-ceeeeeeEEEEECCEEEEEEEEeCCCccc--------cc
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQED--------YN 70 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~ 70 (210)
|+.. .+..+|+|+|.+|||||||+|+|.+..+.. ...| |+..........+ ...+.+|||||+.+ +.
T Consensus 1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~ 77 (301)
T 1wf3_A 1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMD 77 (301)
T ss_dssp --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHH
T ss_pred CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHH
Confidence 5543 466789999999999999999999887642 2222 2222222122223 46788999999876 33
Q ss_pred ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (210)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
.....+++++|++++|+|++++.+... ..+...+....++.|+++|+||+|+..... . .....+
T Consensus 78 ~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~----------~----~~~~~~ 141 (301)
T 1wf3_A 78 QEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE----------E----AMKAYH 141 (301)
T ss_dssp HHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH----------H----HHHHHH
T ss_pred HHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH----------H----HHHHHH
Confidence 445567889999999999988754432 334456665545799999999999965421 0 122223
Q ss_pred H-cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 151 Q-IGASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 151 ~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
. .+..+++++||+++.|++++++++.+.+.
T Consensus 142 ~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 142 ELLPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp HTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred HhcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 2 34457899999999999999999988664
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.91 E-value=8.3e-25 Score=168.36 Aligned_cols=150 Identities=15% Similarity=0.194 Sum_probs=110.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeee-eeEEEEECCEEEEEEEEeCCCcccccc----------cCcccc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNR----------LRPLSY 77 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 77 (210)
.+|+++|.+|||||||+|+|.+..+.....|....+ ....+..++. .+.+||+||+..+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 489999999999999999999876544334444322 2334555664 778899999988764 334455
Q ss_pred --cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362 78 --RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (210)
Q Consensus 78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
..+|++|+|+|+++.++...+ ...+.. .++|+++|+||+|+..... . ......++..++.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l----~~~l~~--~~~pvilv~NK~Dl~~~~~----------~-~~~~~~l~~~lg~- 141 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL----TSQLFE--LGKPVVVALNMMDIAEHRG----------I-SIDTEKLESLLGC- 141 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH----HHHHTT--SCSCEEEEEECHHHHHHTT----------C-EECHHHHHHHHCS-
T ss_pred hhCCCCEEEEEeeCCCchhHHHH----HHHHHH--cCCCEEEEEEChhcCCcCC----------c-HHHHHHHHHHcCC-
Confidence 789999999999987665443 223332 3789999999999976542 1 1124556777786
Q ss_pred EEEEeccCCCCCHHHHHHHHHHH
Q 028362 156 YYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 156 ~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
+++++||+++.|++++|+++.+.
T Consensus 142 ~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 142 SVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CEEECBGGGTBSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 89999999999999999999876
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=7.6e-24 Score=164.44 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=114.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccc------cCcccc--
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSY-- 77 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-- 77 (210)
+.++|+++|++|||||||+++|.+..+.....|+..... ...+..++. .+.+||+||+..+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999999999998766444445443333 334455554 478899999988765 344444
Q ss_pred cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (210)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
.++|++++|+|+++.+... ..+.+.... ...|+++|+||+|+..... ... ....+.+.++. ++
T Consensus 80 ~~~d~vi~v~D~~~~~~~~---~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~ 142 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMRNL---FLTLELFEM--EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PV 142 (271)
T ss_dssp TCCSEEEEEEEGGGHHHHH---HHHHHHHHT--TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CE
T ss_pred cCCcEEEEEecCCcchhhH---HHHHHHHhc--CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cE
Confidence 6799999999998864322 223333222 2389999999999876543 211 26677778886 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 158 IECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 158 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
+++||+++.|++++++++.+.+...
T Consensus 143 ~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 143 IPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999987654
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=1.2e-24 Score=169.13 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=111.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeee-eeEEEEECCEEEEEEEEeCCCcccccccCc----------c
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNRLRP----------L 75 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~----------~ 75 (210)
+.++|+++|.+|||||||+|+|.+..+.....|..... ....+...+ ..+.+||+||+..+..... .
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 46899999999999999999999876543334443222 233344444 4567799999988763221 1
Q ss_pred c--ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362 76 S--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (210)
Q Consensus 76 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
+ ...+|++++|+|+++.+..... ...+... ++|+++|+||+|+..... . ......+++.++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~-~~~~~~l~~~lg 142 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYL----TLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIEIDALSARLG 142 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHH----HHHHHHH--TCCEEEEEECHHHHHHTT----------E-EECHHHHHHHHT
T ss_pred HHhhcCCCEEEEEecCCChHHHHHH----HHHHHhc--CCCEEEEEECccchhhhh----------H-HHHHHHHHHhcC
Confidence 2 2689999999999987665443 2222222 689999999999976532 1 123466777778
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
. +++++||++|.|++++++++.+.+...
T Consensus 143 ~-~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 143 C-PVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp S-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred C-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 6 899999999999999999998876543
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=2.6e-25 Score=167.09 Aligned_cols=149 Identities=11% Similarity=0.129 Sum_probs=101.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccC--
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG-- 79 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-- 79 (210)
..+.++|+++|++|||||||+++|..+.+.. .+.|+....+ ..+.+.+||+||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 4467999999999999999999999887654 2344443322 44678899999999999888888887
Q ss_pred --ccEEEEEEECC-ChhHHHHHHHHHHHHHhc-----cCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362 80 --ADVFVLAFSLV-SRASYENVLKKWIPELQH-----YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (210)
Q Consensus 80 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (210)
++++|+|+|++ ++.++... ..|+..+.. ...++|+++|+||+|+....... .......+++..++..
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~l~~~~~~~~~~ 155 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARPPS----KIKDALESEIQKVIER 155 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH----HHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH----HHHHHHHHHHHHHHHH
Confidence 89999999999 88888877 444443332 23689999999999997654200 0000114556666666
Q ss_pred cCCcEEEEeccCCCCC
Q 028362 152 IGASYYIECSSKTQQN 167 (210)
Q Consensus 152 ~~~~~~~~~Sa~~~~~ 167 (210)
.+. +++++||+++.+
T Consensus 156 ~~~-~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 156 RKK-SLNEVERKINEE 170 (218)
T ss_dssp HHH-HHHC--------
T ss_pred Hhc-cccccccccccc
Confidence 664 778899998764
No 125
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.91 E-value=3.2e-23 Score=165.83 Aligned_cols=126 Identities=19% Similarity=0.217 Sum_probs=97.0
Q ss_pred EEEEEEEeCCCcccccccCcccccCccEEEEEEECCC----------hhHHHHHHHHHHHHHhcc-C-CCCcEEEEeeCc
Q 028362 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY-S-PGVPVVLVGTKL 122 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~ 122 (210)
.+.+.+||++||+.++..|..++++++++|+|||+++ ..++.+. ..|...+... . .++|++|++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECc
Confidence 4788999999999999999999999999999999999 4578887 4565555443 2 689999999999
Q ss_pred cccccccc---ccC--CCCCCccCHHHHHHHHHH----------cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 123 DLREDKHY---LAD--HPGLVPVTTAQGEELRKQ----------IGASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 123 D~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
|+...... +.. ......+..+++..++.. ....++++|||+++.||+++|.++.+.+.+
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 99644310 000 001112677888888873 233478899999999999999999998864
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.90 E-value=3.1e-24 Score=161.63 Aligned_cols=167 Identities=11% Similarity=-0.007 Sum_probs=108.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEEC-CEEEEEEEEeCCCc----------cccccc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQ----------EDYNRL 72 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~D~~G~----------~~~~~~ 72 (210)
....++|+|+|.+|||||||+++|.+........++.+.+.. ....+. .....+.+|||||. +.+..+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 345789999999999999999999987621111111111111 112222 33467889999994 333444
Q ss_pred CcccccC---ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHH
Q 028362 73 RPLSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 149 (210)
Q Consensus 73 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (210)
+..+++. +|++++|+|++++.+... ..|+..+.. .++|+++|+||+|+...... ....+...+..
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~~l 173 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLTRQES--------INALRATQKSL 173 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG--GCCCEEEEEECGGGSCHHHH--------HHHHHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEeccccCChhhH--------HHHHHHHHHHH
Confidence 4455554 788999999987544322 455566655 46899999999999764320 00122223333
Q ss_pred HHc------CCcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 150 KQI------GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 150 ~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
..+ ...+++++||+++.|++++|+++.+.+....
T Consensus 174 ~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 174 DAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred HhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 332 4468999999999999999999999886553
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=1.1e-23 Score=174.72 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=97.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC--------ccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 76 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 76 (210)
..++|+|+|.+|||||||+|+|.+... .....+++.+.....+.+++ +.+.+|||||++++...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 458999999999999999999998752 23333344343444566666 568889999998776443 336
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
++.+|++++|+|++++.++... ..+...+... .++|+++|+||+|+..... . ....+... +..+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~----------~---~~~~l~~~-~~~~ 373 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANAD----------A---LIRAIADG-TGTE 373 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTH----------H---HHHHHHHH-HTSC
T ss_pred cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccc----------h---hHHHHHhc-CCCc
Confidence 8899999999999998877432 2333333322 2799999999999976542 2 12334433 2257
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHh
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
++++||+++.|++++++++.+.+.
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHh
Confidence 899999999999999999999887
No 128
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.90 E-value=1.4e-23 Score=167.82 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=93.7
Q ss_pred EEEEEEEEeCCCcccccccCcccccCccEEEEEEECC----------ChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeC
Q 028362 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHY--SPGVPVVLVGTK 121 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK 121 (210)
+.+.+++||++||++|+.+|..++++++++|+|||++ +..++.+. ..|...+... .+++|++||+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence 6789999999999999999999999999999999998 78899887 5665555443 268999999999
Q ss_pred cccccccccc--------cCCC---CCCccCHHHHHHHHHHc---------------CCcEEEEeccCCCCCHHHHHHHH
Q 028362 122 LDLREDKHYL--------ADHP---GLVPVTTAQGEELRKQI---------------GASYYIECSSKTQQNVKAVFDAA 175 (210)
Q Consensus 122 ~D~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~~i~~~~~~i 175 (210)
+|+....... .+.. ...+...+++..++... ...++++|||+++.||+++|.++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 9996543210 0000 00112356777775431 22356899999999999999999
Q ss_pred HHHHhC
Q 028362 176 IKVVIK 181 (210)
Q Consensus 176 ~~~~~~ 181 (210)
.+.+.+
T Consensus 340 ~~~I~~ 345 (354)
T 2xtz_A 340 DETLRR 345 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 129
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.90 E-value=4.4e-23 Score=162.93 Aligned_cols=127 Identities=16% Similarity=0.135 Sum_probs=95.9
Q ss_pred EEEEEEEeCCCcccccccCcccccCccEEEEEEECC----------ChhHHHHHHHHHHHHH-hccC-CCCcEEEEeeCc
Q 028362 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKL 122 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~ 122 (210)
.+.+++||++||++++..|..++++++++|+|||++ +..++.+.. .|...+ .... .++|++|++||+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~-~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK-ALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH-HHHHHHHTSGGGTTCEEEEEEECH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH-HHHHHHhhhhccCCceEEEEEECc
Confidence 378999999999999999999999999999999665 667787774 444444 3333 689999999999
Q ss_pred cccccccccc------CCCCCCccCHHHHHHHHH----------HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 123 DLREDKHYLA------DHPGLVPVTTAQGEELRK----------QIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 123 D~~~~~~~~~------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
|+...+.... +...-..+..+++.++.. ..+ ..+++|||+++.||+++|..+.+.+.+..
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 9976542000 111111367788888843 233 37788999999999999999999987653
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=2.5e-23 Score=171.63 Aligned_cols=159 Identities=18% Similarity=0.216 Sum_probs=111.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc----------ccccCc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----------YNRLRP 74 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~ 74 (210)
..+||+++|.+|||||||+|+|.+.... .....++.+.+...+..++.. +.+|||||+.+ |..+..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHH
Confidence 5699999999999999999999987652 333334434344455666654 77899999843 332222
Q ss_pred -ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH-HHHHHc
Q 028362 75 -LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQI 152 (210)
Q Consensus 75 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 152 (210)
.+++.+|++++|+|++++.+.++. .|+..+.. .++|+++|+||+|+..... ...++.. .+.+.+
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDKDE----------STMKEFEENIRDHF 317 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCCCT----------THHHHHHHHHHHHC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH--cCCcEEEEEECccCCCcch----------HHHHHHHHHHHHhc
Confidence 367789999999999998887764 56666554 4799999999999976532 3333332 222222
Q ss_pred ---CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 153 ---GASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 153 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
+..+++++||++|.|++++|+.+.+.+..
T Consensus 318 ~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 318 QFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp GGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 33489999999999999999999887753
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=4.1e-23 Score=171.19 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=115.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCC----------cccccccC
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG----------QEDYNRLR 73 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 73 (210)
...++|+++|.+|||||||+++|.+... ...+.+++.+.+...+..++. .+++||||| ++.|..+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4579999999999999999999997642 233333443334445666665 678899999 56665554
Q ss_pred c-ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362 74 P-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (210)
Q Consensus 74 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (210)
. .+++.+|++|+|+|++++.+... ..|...+.. .++|+++|+||+|+..... ...+++.+.++..
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE--AGKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH 336 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH--cCCCEEEEEEChhcCCCch----------HHHHHHHHHHHHh
Confidence 4 36788999999999987544332 456655554 4699999999999976543 5556666666554
Q ss_pred ----CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 153 ----GASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 153 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
+..+++++||++|.|++++|+++.+.+..
T Consensus 337 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 337 FQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred cccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 23589999999999999999999987743
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.89 E-value=2.6e-22 Score=161.60 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=114.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccc---------cCcc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR---------LRPL 75 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~ 75 (210)
...++|+++|.+|||||||+++|.+........+...... ....... ...+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999998764322122111111 1122223 35688899999865421 1112
Q ss_pred cccCccEEEEEEECCChh--HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362 76 SYRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
+...+|++++|+|++++. ++... ..|+..+.....+.|+++|+||+|+..... .+++..++...+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~------------~~~~~~~~~~~~ 309 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN------------IKRLEKFVKEKG 309 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH------------HHHHHHHHHHTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH------------HHHHHHHHHhcC
Confidence 345699999999998877 56665 567777665445899999999999975432 244556666666
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 154 ASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
. +++++||++|+|++++++++.+.+...
T Consensus 310 ~-~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 310 L-NPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp C-CCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred C-CeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 5 789999999999999999999988543
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.88 E-value=9e-24 Score=172.59 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=112.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcc-------c
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL-------S 76 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------~ 76 (210)
...++|+|+|..|+|||||+++|.+..+. .....++.......+...+. ..+.+|||||++++..+... +
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 45689999999999999999999987653 22222222223334444443 27889999999988766443 6
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
+..+|++|+|+|++..+. ...|+..+... ++|+++|+||+|+..... .+....+++.++. +
T Consensus 111 l~~aD~vllVvD~~~~~~----~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~------------~~~~~~l~~~~g~-~ 171 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPY----EDDVVNLFKEM--EIPFVVVVNKIDVLGEKA------------EELKGLYESRYEA-K 171 (423)
T ss_dssp HTSCSEEEEECSSSCCHH----HHHHHHHHHHT--TCCEEEECCCCTTTTCCC------------THHHHHSSCCTTC-C
T ss_pred HhcCCEEEEEEeCCChHH----HHHHHHHHHhc--CCCEEEEEeCcCCCCccH------------HHHHHHHHHHcCC-C
Confidence 888999999999943332 24566666554 799999999999987643 2556666666675 8
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
++++||+++.|++++|+++.+.+...
T Consensus 172 v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 172 VLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 89999999999999999999998544
No 134
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.88 E-value=7.8e-22 Score=158.31 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=87.4
Q ss_pred EEEEEEEeCCCcccccccCcccccCccEEEEEEECCC----------hhHHHHHHHHHHHHHhcc-C-CCCcEEEEeeCc
Q 028362 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY-S-PGVPVVLVGTKL 122 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~ 122 (210)
.+.+.+||++||+.++..|..++++++++|||+|+++ ..++.+. ..|...+... . .++|++|++||+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEECh
Confidence 3788999999999999999999999999999999999 6788887 4555544433 2 689999999999
Q ss_pred cccccccc---cc---CCCCCCccCHHHHHHHHH-----------HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 123 DLREDKHY---LA---DHPGLVPVTTAQGEELRK-----------QIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 123 D~~~~~~~---~~---~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
|+...... +. +...-..+..+++..++. ..+ .++++|||+++.||+++|.++.+.+.+
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 99754310 00 000001256777777762 123 378899999999999999999998864
No 135
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=2.3e-22 Score=158.26 Aligned_cols=164 Identities=18% Similarity=0.110 Sum_probs=112.4
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCC-ceeeeeeEEEEECCEEEEEEEEeCCCcc---------cc
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQE---------DY 69 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~ 69 (210)
||.+..+..+|+|+|.+|||||||+|+|.+..+.. ...+ ++.......+..+ ...+.+|||||+. .+
T Consensus 1 ~~v~~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~ 78 (301)
T 1ega_A 1 MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLM 78 (301)
T ss_dssp ---CCCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHH
T ss_pred CCcccccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHH
Confidence 56556677899999999999999999999876531 1122 2211111112223 3578889999987 34
Q ss_pred cccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHH
Q 028362 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 149 (210)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (210)
......+++.+|++++|+|+++ +......+.+.+.. .+.|+++|+||+|+..... ...+.+..+.
T Consensus 79 ~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~----------~~~~~l~~l~ 143 (301)
T 1ega_A 79 NKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKA----------DLLPHLQFLA 143 (301)
T ss_dssp TCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHH----------HHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHH----------HHHHHHHHHH
Confidence 5566778899999999999976 22221223333332 4789999999999976221 3345556666
Q ss_pred HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 150 KQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 150 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
..++...++++||+++.|++++++++...+..
T Consensus 144 ~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 144 SQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred HhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 66665578999999999999999999876643
No 136
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.88 E-value=1.9e-21 Score=157.39 Aligned_cols=126 Identities=15% Similarity=0.186 Sum_probs=94.2
Q ss_pred EEEEEEeCCCcccccccCcccccCccEEEEEEECCC----------hhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcc
Q 028362 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVVLVGTKLD 123 (210)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D 123 (210)
+.+++||++||+.++..|..++++++++|+|||+++ ..++.+. ..|+..+... .+++|++||+||+|
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChh
Confidence 789999999999999999999999999999999999 8899987 6777666554 26899999999999
Q ss_pred cccccc---ccc--C----------CCC----CCc-cCHHHHHHHH-----HHc-------CCcEEEEeccCCCCCHHHH
Q 028362 124 LREDKH---YLA--D----------HPG----LVP-VTTAQGEELR-----KQI-------GASYYIECSSKTQQNVKAV 171 (210)
Q Consensus 124 ~~~~~~---~~~--~----------~~~----~~~-~~~~~~~~~~-----~~~-------~~~~~~~~Sa~~~~~i~~~ 171 (210)
+..... ... . ..+ ... ...+++..|+ ... ....+++|||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 865432 100 0 000 000 1245566553 221 2346779999999999999
Q ss_pred HHHHHHHHhCC
Q 028362 172 FDAAIKVVIKP 182 (210)
Q Consensus 172 ~~~i~~~~~~~ 182 (210)
|.++.+.+...
T Consensus 376 F~~v~~~I~~~ 386 (402)
T 1azs_C 376 FNDCRDIIQRM 386 (402)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887644
No 137
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.88 E-value=2.3e-22 Score=159.35 Aligned_cols=128 Identities=18% Similarity=0.208 Sum_probs=95.3
Q ss_pred EEEEEEEEeCCCcccccccCcccccCccEEEEEEECC----------ChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCc
Q 028362 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHYS-PGVPVVLVGTKL 122 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~ 122 (210)
..+.+++||++||++++.+|..++++++++|+|||++ +..++.+....|...+.... .++|++|++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 3478999999999999999999999999999999998 77888887444444444433 689999999999
Q ss_pred ccccccccccC-----CCCCCccCHHHHHHHHHHc--------------------------CCcEEEEeccCCCCCHHHH
Q 028362 123 DLREDKHYLAD-----HPGLVPVTTAQGEELRKQI--------------------------GASYYIECSSKTQQNVKAV 171 (210)
Q Consensus 123 D~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~~ 171 (210)
|+........+ .........+++..+.... +...+++|||++..||+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 99764321110 0111113566665555432 1246788999999999999
Q ss_pred HHHHHHHHhC
Q 028362 172 FDAAIKVVIK 181 (210)
Q Consensus 172 ~~~i~~~~~~ 181 (210)
|..+.+.+++
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=4.1e-22 Score=164.48 Aligned_cols=153 Identities=21% Similarity=0.211 Sum_probs=102.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc---------cccCcccc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPLSY 77 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~ 77 (210)
.+|+|+|.+|||||||+|+|.+.... ..+..++.+........++. .+.+|||||++.. +..+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987642 23223333333445666775 4678999998652 34456678
Q ss_pred cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHH-HHHHHHcCCcE
Q 028362 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG-EELRKQIGASY 156 (210)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 156 (210)
+++|++++|+|+.++.+..+ ..+...+.. .++|+++|+||+|+... . .... .++. .++..+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~ 141 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE------------F-EREVKPELY-SLGFGE 141 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCS
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCC
Confidence 99999999999987654432 122223322 36899999999998532 1 1122 3343 456546
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
++++||++|.|++++++++.+.+..
T Consensus 142 ~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 142 PIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCCHHHHHHHHHHhccc
Confidence 7899999999999999999998864
No 139
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=7.3e-23 Score=163.22 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=114.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeeeeEEEEECCEEEEEEEEeCCCcc----cccccCccccc---Cc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYI--PTVFDNFSANVVAEGTTVNLGLWDTAGQE----DYNRLRPLSYR---GA 80 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~---~~ 80 (210)
+|+|+|.+|||||||+++|.......... .|....+. .+.+++ ...+.+||+||+. .+..+...+++ .+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g-~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG-MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE-EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE-EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 68899999999999999999775321111 22222211 223332 2468899999964 34445455554 49
Q ss_pred cEEEEEEECCC---hhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362 81 DVFVLAFSLVS---RASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (210)
Q Consensus 81 ~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (210)
+++|+|+|+++ +.++... ..|...+..+. .++|+++|+||+|+.... +....+...+..
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--------------e~~~~l~~~l~~ 302 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTD 302 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCS
T ss_pred cEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--------------HHHHHHHHHhhc
Confidence 99999999998 7788876 67888887764 479999999999996431 345566666652
Q ss_pred -cEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362 155 -SYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 155 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
.+++++||+++.|+++++.++.+.+.....
T Consensus 303 ~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 303 DYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 378899999999999999999999876543
No 140
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=1.9e-22 Score=167.34 Aligned_cols=151 Identities=20% Similarity=0.220 Sum_probs=111.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc-cccccC--------ccc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE-DYNRLR--------PLS 76 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~~--------~~~ 76 (210)
.++|+|+|.+|||||||+|+|.+... ...+..|+.+.....+.+++ ..+.+|||||++ ++.... ..+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999998653 34444444444455566666 457889999998 664322 245
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
++.+|++|+|+|++++.+++.. .+++.+ .+.|+++|+||+|+... +..+++..+.. .+ .+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~-~~ 380 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TD-RH 380 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CS-TT
T ss_pred hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CC-Cc
Confidence 7889999999999988777553 333443 37899999999999643 23344444432 22 37
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHh
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
++++||+++.|++++++++.+.+.
T Consensus 381 ~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 381 MVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999998765
No 141
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=2.9e-21 Score=157.81 Aligned_cols=168 Identities=13% Similarity=0.065 Sum_probs=114.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE--------EE---------E---ECCEEEEEEEEeC
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA--------NV---------V---AEGTTVNLGLWDT 63 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--------~~---------~---~~~~~~~~~i~D~ 63 (210)
..++.++|+++|.+++|||||+++|.+...... .......... .+ . .......+.+||+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 456789999999999999999999997543221 0000000000 00 0 0123378999999
Q ss_pred CCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHH
Q 028362 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA 143 (210)
Q Consensus 64 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~ 143 (210)
||+++|...+...+..+|++++|+|++++.+.... ..++..+.... ..|+++|+||+|+.+... .....+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~~--------~~~~~~ 152 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKEE--------ALSQYR 152 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHH--------HHHHHH
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchHH--------HHHHHH
Confidence 99999999888899999999999999987645444 45555555432 358999999999975431 001122
Q ss_pred HHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 144 QGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 144 ~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
+..++....+ ..+++++||+++.|++++++++.+.+...
T Consensus 153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 3333332221 34899999999999999999999877554
No 142
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=7.4e-22 Score=152.27 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=105.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCc--eeeeeeEEEEECCEEEEEEEEeCCCcccccccCcc-------
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPT--VFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL------- 75 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~------- 75 (210)
.+.++|+|+|.+|||||||+++|.+.. +.....++ +..........++ ..+.+|||||+..+......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 356999999999999999999999876 44443343 2222223344455 56788999998776443322
Q ss_pred ----cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEee-CcccccccccccCCCCCCccCH-------H
Q 028362 76 ----SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT-KLDLREDKHYLADHPGLVPVTT-------A 143 (210)
Q Consensus 76 ----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n-K~D~~~~~~~~~~~~~~~~~~~-------~ 143 (210)
+++.+|++|+|+|+++..........++..+.......|+++|+| |+|+.... +.. .
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----------~~~~i~~~~~~ 166 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----------LMDYMHDSDNK 166 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----------HHHHHHHCCCH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----------HHHHHHhcchH
Confidence 568899999999998633222111223222211112456666666 99997431 111 3
Q ss_pred HHHHHHHHcCCcE--E--EEeccCCCCCHHHHHHHHHHHHhC
Q 028362 144 QGEELRKQIGASY--Y--IECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 144 ~~~~~~~~~~~~~--~--~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
.+..+....+... + +++||+++.|++++|.++.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 167 ALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 3455666655321 2 689999999999999999998865
No 143
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=1e-20 Score=154.71 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=105.4
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcC---CCCCCCCC--ceeeeeeE-EEEE-------------C--C----EEEEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSN---KFPTDYIP--TVFDNFSA-NVVA-------------E--G----TTVNL 58 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~---~~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~ 58 (210)
+.+..++|+++|..++|||||+++|.+. .+..+..+ |....+.. .... + + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 4567899999999999999999999843 23333333 33222221 1111 1 1 23789
Q ss_pred EEEeCCCcccccccCcccccCccEEEEEEECCC----hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC
Q 028362 59 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 134 (210)
Q Consensus 59 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~ 134 (210)
.+||+||+++|...+...+..+|++|+|+|+++ +++.+.+ . .+... ...|+++++||+|+.....
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~l-~~~~iivv~NK~Dl~~~~~----- 152 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-M----ALEIL-GIDKIIIVQNKIDLVDEKQ----- 152 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-H----HHHHT-TCCCEEEEEECTTSSCTTT-----
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-H----HHHHc-CCCeEEEEEEccCCCCHHH-----
Confidence 999999999998777777888999999999985 3444433 2 22221 2358999999999976431
Q ss_pred CCCCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 135 PGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.....+++.+++..+ ...+++++||+++.|++++++++.+.+..+
T Consensus 153 ---~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 153 ---AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp ---TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred ---HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 012345666666543 234899999999999999999999877654
No 144
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=2.6e-21 Score=163.89 Aligned_cols=163 Identities=14% Similarity=0.187 Sum_probs=115.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcC--CCCC-----CCCCc------eeeee---eEEEEE---CCEEEEEEEEeCCC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----DYIPT------VFDNF---SANVVA---EGTTVNLGLWDTAG 65 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~-----~~~~~------~~~~~---~~~~~~---~~~~~~~~i~D~~G 65 (210)
.++..+|+++|+.++|||||+++|... .+.. ....+ .+.++ ...+.+ ++..+.+++|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 356789999999999999999999852 2211 00111 01111 011111 46678999999999
Q ss_pred cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHH
Q 028362 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 145 (210)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (210)
+.+|...+...++.+|++|+|+|+++..+.+.. ..|..... .++|+++|+||+|+.... .....
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~------------~~~v~ 146 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSAD------------VDRVK 146 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC------------HHHHH
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccC------------HHHHH
Confidence 999998888899999999999999998777665 55655443 478999999999997542 22334
Q ss_pred HHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 146 EELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 146 ~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
.++...++.. +++++||++|.|++++++++.+.+..+.
T Consensus 147 ~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 147 KQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp HHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 4555555542 4789999999999999999999887654
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.86 E-value=1e-21 Score=162.31 Aligned_cols=154 Identities=21% Similarity=0.278 Sum_probs=102.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc--------cc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP--------LS 76 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~ 76 (210)
..++|+|+|.+|||||||+|+|.+..+ .....+++.+.....+.+++ ..+.+|||||+.++...+. .+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 458999999999999999999997643 23333333333344556676 4568899999876654333 35
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
+..+|++++|+|++++.+... ..|+..+. +.|+++|+||+|+..... .. ....+. ...+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~----------~~--~~~~~~---~~~~ 359 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQL----------IT--SLEYPE---NITQ 359 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGG----------ST--TCCCCT---TCCC
T ss_pred hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchh----------hH--HHHHhc---cCCc
Confidence 788999999999998776654 45555553 379999999999976543 11 001111 2347
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
++++||+++.|++++++++.+.+....
T Consensus 360 ~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 360 IVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 899999999999999999999887543
No 146
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.85 E-value=4.2e-23 Score=172.75 Aligned_cols=162 Identities=19% Similarity=0.183 Sum_probs=113.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
++.++|+++|++++|||||+++|....+.....++....+.. .... +....+++|||||++.|..++..++..+|++|
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~-~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL-PSGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCS-SCSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEe-CCCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 467899999999999999999999765544444444333221 1112 12236788999999999999999999999999
Q ss_pred EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH---HHHc-CCcEEEEe
Q 028362 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL---RKQI-GASYYIEC 160 (210)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ 160 (210)
+|+|+++....+.. .++..+.. .++|+++++||+|+..... . ....+...+ +..+ +..+++++
T Consensus 81 LVVDa~dg~~~qt~--e~l~~~~~--~~vPiIVViNKiDl~~~~~------~---~v~~~l~~~~~~~e~~~~~~~iv~v 147 (537)
T 3izy_P 81 LVVAADDGVMKQTV--ESIQHAKD--AHVPIVLAINKCDKAEADP------E---KVKKELLAYDVVCEDYGGDVQAVHV 147 (537)
T ss_dssp EECBSSSCCCHHHH--HHHHHHHT--TTCCEEECCBSGGGTTTSC------C---SSSSHHHHTTSCCCCSSSSEEECCC
T ss_pred EEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEecccccccch------H---HHHHHHHhhhhhHHhcCCCceEEEE
Confidence 99999986655443 22333332 4689999999999975432 0 011111111 1111 23488999
Q ss_pred ccCCCCCHHHHHHHHHHHHhC
Q 028362 161 SSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 161 Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
||++|.|++++++++...+..
T Consensus 148 SAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 148 SALTGENMMALAEATIALAEM 168 (537)
T ss_dssp CSSSSCSSHHHHHHHHHHHTT
T ss_pred ECCCCCCchhHHHHHHHhhhc
Confidence 999999999999999987753
No 147
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=9.1e-22 Score=144.86 Aligned_cols=114 Identities=12% Similarity=0.150 Sum_probs=85.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccC---
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG--- 79 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--- 79 (210)
.+.++|+++|++|||||||+++|.+..+.. ...++... +...+.+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 467899999999999999999999887643 12222211 1244678899999999998888888776
Q ss_pred -ccEEEEEEECC-ChhHHHHHHHHHHHHHh-c----cCCCCcEEEEeeCccccccc
Q 028362 80 -ADVFVLAFSLV-SRASYENVLKKWIPELQ-H----YSPGVPVVLVGTKLDLREDK 128 (210)
Q Consensus 80 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~-~----~~~~~piilv~nK~D~~~~~ 128 (210)
+|++|+|+|++ ++.++... ..|+..+. . ..+++|+++|+||+|+....
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 89999887 45544333 2 22589999999999997654
No 148
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.85 E-value=2.3e-21 Score=164.46 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=112.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC--CCCC-----CCCC------ceeeeee---EEEEE---CCEEEEEEEEeCCCcc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----DYIP------TVFDNFS---ANVVA---EGTTVNLGLWDTAGQE 67 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~--~~~~-----~~~~------~~~~~~~---~~~~~---~~~~~~~~i~D~~G~~ 67 (210)
+..+|+|+|+.++|||||+++|... .+.. .... +.+.++. ..+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 5689999999999999999999852 2211 1111 1111111 11212 5667899999999999
Q ss_pred cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (210)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (210)
+|...+...++.+|++|+|+|++++.+.+.. ..|..... .++|+++|+||+|+.... ......+
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~---~~ipiIvViNKiDl~~a~------------~~~v~~e 146 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAME---MDLEVVPVLNKIDLPAAD------------PERVAEE 146 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC------------HHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEeeeccCccccc------------HHHHHHH
Confidence 9999888899999999999999987766665 55655443 368999999999997642 2233455
Q ss_pred HHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362 148 LRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP 183 (210)
Q Consensus 148 ~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 183 (210)
+...++.. +++++||+++.|++++++++.+.+..+.
T Consensus 147 i~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 147 IEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp HHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred HHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 55555542 4789999999999999999999887654
No 149
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=2.3e-20 Score=154.08 Aligned_cols=159 Identities=21% Similarity=0.200 Sum_probs=104.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC-----------
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----------- 73 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------- 73 (210)
..++|+|+|++|||||||+|++.+... ......++.+.....+.+++. .+.+||++|+.++....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 468999999999999999999998754 223233333333455667776 46789999986543321
Q ss_pred -cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH-HHHHH
Q 028362 74 -PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQ 151 (210)
Q Consensus 74 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (210)
..+++.+|++++|+|++++.+..+. .+...+.. .++|+++|+||+|+..... ...++.. .+.+.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 322 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK 322 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCchh----------hHHHHHHHHHHHH
Confidence 1245678999999999887665442 33344433 4789999999999975432 2333332 22222
Q ss_pred c---CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 152 I---GASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 152 ~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
+ +..+++++||++|.|++++|+.+.+.+..
T Consensus 323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2 33488999999999999999999876643
No 150
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=3e-22 Score=165.19 Aligned_cols=153 Identities=18% Similarity=0.140 Sum_probs=98.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcc--------cccccCcccccC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE--------DYNRLRPLSYRG 79 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 79 (210)
.+|+|+|.+|||||||+|+|.+..+.. ..++.+.+... .......+..+.+|||||++ .++..+..++++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 689999999999999999999876531 11222222111 11222233568899999986 556677778899
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
+|++|+|+|+.++.+..+ ..+...+.. .++|+++|+||+|+..... . ..++. .++..++++
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~----------~----~~~~~-~lg~~~~~~ 143 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA----------N----IYDFY-SLGFGEPYP 143 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC---------------C----CCSSG-GGSSCCCEE
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchh----------h----HHHHH-HcCCCCeEE
Confidence 999999999988766543 234444543 5789999999999975421 0 01112 234446789
Q ss_pred eccCCCCCHHHHHHHHHHHHhC
Q 028362 160 CSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
+||++|.|++++++++.+.+..
T Consensus 144 iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 144 ISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp CBTTTTBTHHHHHHHHHHTGGG
T ss_pred EeCcCCCChHHHHHHHHHhcCc
Confidence 9999999999999999988864
No 151
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.84 E-value=9.4e-21 Score=157.74 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=110.6
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCC----C---CCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNK----F---PTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPL 75 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~----~---~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 75 (210)
...+.++|+++|..++|||||+++|.+.. . ..+..+....+. ...+..++ +.+.+||+||+++|...+..
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 34568999999999999999999999765 2 222222111111 11233344 67888999999999888888
Q ss_pred cccCccEEEEEEECCC---hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362 76 SYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (210)
.+..+|++|+|+|+++ +++.+.+ ..+.. .++|+++|+||+|+.+... .....+++.++....
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l-----~~~~~--~~ip~IvviNK~Dl~~~~~--------~~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHM-----LILDH--FNIPIIVVITKSDNAGTEE--------IKRTEMIMKSILQST 157 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHH-----HHHHH--TTCCBCEEEECTTSSCHHH--------HHHHHHHHHHHHHHS
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHH-----HHHHH--cCCCEEEEEECCCcccchh--------HHHHHHHHHHHHhhh
Confidence 8999999999999987 4444433 22322 3688899999999975321 002344555665554
Q ss_pred -C--CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 153 -G--ASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 153 -~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
+ ..+++++||++|.|++++++++.+.+.
T Consensus 158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 158 HNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp SSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 2 248999999999999999999999774
No 152
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=141.82 Aligned_cols=168 Identities=16% Similarity=0.125 Sum_probs=103.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc--e-eeeeeEEEEECCEEEEEEEEeCCCcc-----------cccc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT--V-FDNFSANVVAEGTTVNLGLWDTAGQE-----------DYNR 71 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~ 71 (210)
...+||+|+|.+|||||||+++|.+..+.....++ . .........+++ ..+.+|||||.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 46799999999999999999999988775544442 2 111233344555 467889999943 3444
Q ss_pred cCcccccCccEEEEEEECCChhHHH-HHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362 72 LRPLSYRGADVFVLAFSLVSRASYE-NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (210)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
.+...++.++++|+|+|+++..... .....+...+... ...|+++|+||+|+...... . +......+.+..+.+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~-~---~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNL-H---DYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC----------------CHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccH-H---HHHHhchHHHHHHHH
Confidence 4555667899999999987543321 1112333332221 24699999999998765320 0 000011246777788
Q ss_pred HcCCcEEEEeccCCC-----CCHHHHHHHHHHHHhC
Q 028362 151 QIGASYYIECSSKTQ-----QNVKAVFDAAIKVVIK 181 (210)
Q Consensus 151 ~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~~ 181 (210)
..+. .++.+++..+ .++.++|..+...+..
T Consensus 180 ~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8776 5566665533 6899999988777744
No 153
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.84 E-value=5.4e-20 Score=150.58 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=110.9
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCC---CCCCCCC--ceeeeeeE-EEEE-------------C--C----EEEEE
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIP--TVFDNFSA-NVVA-------------E--G----TTVNL 58 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~ 58 (210)
..+..++|+++|..++|||||+++|.+.. +..+..+ |....+.. .... + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 34677999999999999999999998532 3333223 33222221 1110 1 1 13789
Q ss_pred EEEeCCCcccccccCcccccCccEEEEEEECCCh----hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC
Q 028362 59 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 134 (210)
Q Consensus 59 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~ 134 (210)
.+||+||+++|.......+..+|++|+|+|+++. ++.+.+ . .+... ...|+++|+||+|+.....
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~~-~~~~iivviNK~Dl~~~~~----- 154 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-M----ALQII-GQKNIIIAQNKIELVDKEK----- 154 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-H----HHHHH-TCCCEEEEEECGGGSCHHH-----
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-H----HHHHc-CCCcEEEEEECccCCCHHH-----
Confidence 9999999999987777777889999999999853 344333 2 22222 2358999999999976431
Q ss_pred CCCCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 135 PGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.....+++.++.... ...+++++||+++.|++++++++.+.+..+
T Consensus 155 ---~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 155 ---ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp ---HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred ---HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 001233445554432 234899999999999999999999877654
No 154
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.84 E-value=7.9e-20 Score=147.02 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=107.0
Q ss_pred eE-EEEECCCCCCHHHHHHHHHcCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEeCCCccc---------ccccCcccc
Q 028362 9 IK-CVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQED---------YNRLRPLSY 77 (210)
Q Consensus 9 ~k-v~llG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 77 (210)
++ |+|+|.+|||||||+|+|.+........+ ++.+.....+.+++ ..+.+||++|... |+..+. .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 45 99999999999999999998765322222 22222344566777 4568899999722 333333 46
Q ss_pred cCccEEEEEEECCChh--HHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc-C
Q 028362 78 RGADVFVLAFSLVSRA--SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-G 153 (210)
Q Consensus 78 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 153 (210)
..+|++++|+|++++. ..... ..|.+.+.... .+.|+++|+||+|+..... ....+.+..++..+ .
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~~ 325 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELYS 325 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHCS
T ss_pred HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhcC
Confidence 7899999999999876 44443 55666665544 5789999999999965320 01122333444554 2
Q ss_pred -CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 154 -ASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 154 -~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
..+++++||+++.|++++++++.+.+...
T Consensus 326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 326 PIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 23678999999999999999999877543
No 155
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.83 E-value=7.4e-20 Score=155.31 Aligned_cols=168 Identities=15% Similarity=0.070 Sum_probs=107.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeeeeeEEE-------------EECCEEEEEEEEeCCCccc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD----YIPTVFDNFSANV-------------VAEGTTVNLGLWDTAGQED 68 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~i~D~~G~~~ 68 (210)
.+.++|+++|++++|||||+++|.+..+... ..++.+..+.... .++.....+++|||||+++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4678999999999999999999986543221 1222222211000 0001112588999999999
Q ss_pred ccccCcccccCccEEEEEEECCC---hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC-----C-CCCc
Q 028362 69 YNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH-----P-GLVP 139 (210)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~-----~-~~~~ 139 (210)
|..++...++.+|++|+|+|+++ +++++.+ . .+.. .++|+++++||+|+.......... . ....
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999999999999999999998 6666543 2 2222 478999999999997532100000 0 0000
Q ss_pred cCHH-------HHHHHHHHc--------------CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 140 VTTA-------QGEELRKQI--------------GASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 140 ~~~~-------~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
...+ +......+. +..+++++||++|.|++++++++...+.
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0000 111111111 2248899999999999999999998765
No 156
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.83 E-value=4.2e-20 Score=141.47 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=101.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce---eeeeeEEEEECCEEEEEEEEeCCCcc--------ccccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---FDNFSANVVAEGTTVNLGLWDTAGQE--------DYNRL 72 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~ 72 (210)
+....+||+|+|.+|||||||+|++.+........++. ..........++ ..+.+|||||.. .+...
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHH
Confidence 34567999999999999999999999877543322221 111122334454 567889999973 33222
Q ss_pred Ccccc----cCccEEEEEEECCChhHHHHHHHHHH-HHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362 73 RPLSY----RGADVFVLAFSLVSRASYENVLKKWI-PELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (210)
Q Consensus 73 ~~~~~----~~~~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (210)
...++ +.+|++|+|+|+++....+.....++ ..+.....+.|+++++||.|+..... .. .......+.+..
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~--~~--~l~~~~~~~l~~ 170 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSL--HD--YVSNTENRALRE 170 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCH--HH--HHHHCCCHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCH--HH--HHhhcccHHHHH
Confidence 22223 89999999999975322221111222 22222223689999999999965321 00 000001134677
Q ss_pred HHHHcCCcEEEEeccCC-----CCCHHHHHHHHHHHHhC
Q 028362 148 LRKQIGASYYIECSSKT-----QQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 148 ~~~~~~~~~~~~~Sa~~-----~~~i~~~~~~i~~~~~~ 181 (210)
+.+..+. .++.+++.. +.|++++++.+.+.+..
T Consensus 171 l~~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 171 LVAECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 7777775 455555443 57999999999888864
No 157
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.4e-21 Score=157.29 Aligned_cols=161 Identities=13% Similarity=0.151 Sum_probs=88.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCC--------Cceeeee-eEEEEECCEEEEEEEEeCCCc-------ccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYI--------PTVFDNF-SANVVAEGTTVNLGLWDTAGQ-------EDY 69 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~-~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~i~D~~G~-------~~~ 69 (210)
..++|+|+|++|+|||||+++|.... +...+. ++....+ ......++..+.+++||+||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 45899999999999999999987543 333322 3333322 222334566788999999999 666
Q ss_pred cccCc-------ccccCcc-----------EEEEEEECCC-hhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccc
Q 028362 70 NRLRP-------LSYRGAD-----------VFVLAFSLVS-RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130 (210)
Q Consensus 70 ~~~~~-------~~~~~~~-----------~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~ 130 (210)
..++. .+++.++ +.+++|++++ ..++..+...|+..+ ..++|+|+|+||+|+.....
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e- 191 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE- 191 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH-
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH-
Confidence 66665 4444333 2245555554 445555433455554 35789999999999976542
Q ss_pred ccCCCCCCccCH--HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 131 LADHPGLVPVTT--AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 131 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
+.. +.+..++..+++ +++++||+++.+ ++.|.++.+.+...
T Consensus 192 ---------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 192 ---------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp ---------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 322 466666666776 788999999998 88888888877543
No 158
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.83 E-value=8.2e-20 Score=150.54 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=103.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCCceeeeeeEEEEEC
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----------------------------DYIPTVFDNFSANVVAE 52 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~ 52 (210)
..+..++|+++|.+++|||||+++|... .+.. +..+....+... ..+.
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~-~~~~ 91 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGR-AYFE 91 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeE-EEEe
Confidence 3457799999999999999999999532 1111 111111112111 1122
Q ss_pred CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhH---HH--HHHHHHHHHHhccCCCCc-EEEEeeCccccc
Q 028362 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---YE--NVLKKWIPELQHYSPGVP-VVLVGTKLDLRE 126 (210)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~ 126 (210)
.....+.+||+||+++|...+...+..+|++|+|+|+++... +. ......+..+.. .++| +++++||+|+..
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence 334688999999999999888889999999999999987632 11 001222222222 3566 999999999954
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHcCC-----cEEEEeccCCCCCHHHHHH
Q 028362 127 DKHYLADHPGLVPVTTAQGEELRKQIGA-----SYYIECSSKTQQNVKAVFD 173 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 173 (210)
... . ........++...+...++. .+++++||++|.|++++++
T Consensus 170 ~~~---~-~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNW---S-NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cch---H-HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 210 0 00000233455556655553 4799999999999999654
No 159
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.82 E-value=2.2e-20 Score=155.78 Aligned_cols=158 Identities=13% Similarity=0.056 Sum_probs=98.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC--CCCCC---------------------------CCceeeeee-EEEEECCEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNK--FPTDY---------------------------IPTVFDNFS-ANVVAEGTT 55 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~--~~~~~---------------------------~~~~~~~~~-~~~~~~~~~ 55 (210)
+..+||+++|.+++|||||+++|.... +...+ ....+.++. ....+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 567999999999999999999997541 11000 000011110 011223344
Q ss_pred EEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHH-----HHHHHHHHHhccCCCCcEEEEeeCccccccccc
Q 028362 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN-----VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130 (210)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~ 130 (210)
+.+.+||+||+++|...+..++..+|++|+|+|++++.+... .....+..+... ...|+++|+||+|+.+....
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchHH
Confidence 678999999999999988889999999999999998753211 112222233222 23579999999999763220
Q ss_pred ccCCCCCCccCHHHHHHHHHHcC----CcEEEEeccCCCCCHHH
Q 028362 131 LADHPGLVPVTTAQGEELRKQIG----ASYYIECSSKTQQNVKA 170 (210)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~ 170 (210)
. .....+++..+...++ ..+++++||++|.|+++
T Consensus 190 ~------~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 190 R------FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp H------HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred H------HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 0 0012233444444443 24889999999999975
No 160
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.82 E-value=1.6e-20 Score=145.85 Aligned_cols=160 Identities=12% Similarity=0.079 Sum_probs=89.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCC-------CCceeeee-eEEEEECCEEEEEEEEeCCCccccc-------
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDY-------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN------- 70 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~-~~~~-------~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~------- 70 (210)
..++|+|+|.+|+|||||+|++..... ...+ .+|..... ...+..++..+.+++|||||.....
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 469999999999999999999876543 3332 34443333 2233345566799999999974321
Q ss_pred ccC-------cccc-------------cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccc
Q 028362 71 RLR-------PLSY-------------RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130 (210)
Q Consensus 71 ~~~-------~~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~ 130 (210)
.+. ..++ ..+|+++++++.+..... .....++..+.. .+|+++|+||+|+.....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~-~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e- 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-PLDIEFMKRLHE---KVNIIPLIAKADTLTPEE- 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC-HHHHHHHHHHTT---TSCEEEEESSGGGSCHHH-
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC-HHHHHHHHHHhc---cCCEEEEEeccCCCCHHH-
Confidence 111 1111 236789999977653211 112345555554 799999999999864321
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 131 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
.....+.+.+.....+. +++.+||+++.|++++++++.+.+
T Consensus 162 -------~~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 -------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp -------HHHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred -------HHHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence 00112334444555665 678899999999999999998765
No 161
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=4.5e-21 Score=158.97 Aligned_cols=156 Identities=18% Similarity=0.122 Sum_probs=100.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCC--------cccccccCccc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAG--------QEDYNRLRPLS 76 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~ 76 (210)
....+|+|+|.+|||||||+|+|.+..+... .++.+.+.. ....+......+.+||||| +++++..+..+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 3457999999999999999999998764311 112222221 1222333446788999999 66777778888
Q ss_pred ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (210)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
++++|++|+|+|..+..+... ..+...+.. .++|+++|+||+|+..... ...++. .++...
T Consensus 100 ~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~~--------------~~~e~~-~lg~~~ 160 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA--------------NIYDFY-SLGFGE 160 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-----------------------CCSG-GGSSSS
T ss_pred HhhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhhh--------------hHHHHH-HcCCCc
Confidence 999999999999876433322 344445543 5799999999999864321 111111 233335
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 157 YIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 157 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
.+++||+++.|++++++++.+.+..
T Consensus 161 ~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 161 PYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred eEEeecccccchHHHHHHHHhhccc
Confidence 5799999999999999999887653
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.81 E-value=8e-20 Score=149.36 Aligned_cols=167 Identities=20% Similarity=0.180 Sum_probs=113.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcC--------CCCCC-CC------Cceeeeee-EEEEECCEEEEEEEEeCCCccc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--------KFPTD-YI------PTVFDNFS-ANVVAEGTTVNLGLWDTAGQED 68 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~--------~~~~~-~~------~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~ 68 (210)
.+..++|+++|.+++|||||+++|... .+... .. .+.+.++. ....+......+.+||+||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 457799999999999999999999863 22110 00 01111111 1122333346788999999999
Q ss_pred ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (210)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (210)
|.......+..+|++|+|+|++++...+. ..++..+.. .++| +++++||+|+..... ......+++..
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~--~~ip~iivviNK~Dl~~~~~-------~~~~~~~~~~~ 156 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFMNKVDMVDDPE-------LLDLVEMEVRD 156 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHH--TTCCCEEEEEECGGGCCCHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEECccccCcHH-------HHHHHHHHHHH
Confidence 98888888999999999999988754332 345555444 3678 889999999974211 00012345666
Q ss_pred HHHHcCC----cEEEEeccCCCCC------------------HHHHHHHHHHHHhCC
Q 028362 148 LRKQIGA----SYYIECSSKTQQN------------------VKAVFDAAIKVVIKP 182 (210)
Q Consensus 148 ~~~~~~~----~~~~~~Sa~~~~~------------------i~~~~~~i~~~~~~~ 182 (210)
+...++. .+++++||+++.| ++++++.+.+.+..+
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 7777663 5899999999987 788888887766543
No 163
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.81 E-value=4.3e-19 Score=148.92 Aligned_cols=115 Identities=12% Similarity=0.030 Sum_probs=81.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC------------------CCCC------CCCceeeeeeEEEEECCEEEEEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNK------------------FPTD------YIPTVFDNFSANVVAEGTTVNLGLW 61 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~------------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~ 61 (210)
.+..+|+|+|.+|+|||||+++|.... .... .-.+.. .....+... .+.+.+|
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~-~~~~~~~~~--~~~i~li 87 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVT-TSVMQFPYK--DYLINLL 87 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSS-SSEEEEEET--TEEEEEE
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEE-EeEEEEEeC--CEEEEEE
Confidence 356899999999999999999996210 0000 000000 001123333 3678899
Q ss_pred eCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 62 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
||||+.+|...+..+++.+|++|+|+|+++..+.... ..|. .+.. .++|+++|+||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~-~~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLME-VCRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHH-HHHT--TTCCEEEEEECTTSCCS
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHH-HHHH--cCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999999987666654 3443 3333 36899999999999654
No 164
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.81 E-value=2.8e-20 Score=153.33 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=105.1
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcC--CCCCCC-----------------------------CCceeeeeeEEEEEC
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDY-----------------------------IPTVFDNFSANVVAE 52 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~ 52 (210)
..+..++|+++|..++|||||+++|... .+.... .+........ ..+.
T Consensus 2 ~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~-~~~~ 80 (435)
T 1jny_A 2 SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTF-MRFE 80 (435)
T ss_dssp --CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------CEEE
T ss_pred CCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeE-EEEe
Confidence 4567899999999999999999999864 332110 0001111110 1122
Q ss_pred CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHH------HHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV------LKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (210)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~piilv~nK~D~~~ 126 (210)
...+.+.+||+||+++|...+..++..+|++|+|+|+++ .+++.. ....+..+... .-.|+++++||+|+..
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccCCC
Confidence 334678999999999999888889999999999999998 556543 12222222221 1236899999999976
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHHH
Q 028362 127 DKHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVFD 173 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~~ 173 (210)
... . ........+++..++..++. .+++++||++|.|+.+++.
T Consensus 159 ~~~---~-~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 159 PPY---D-EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp STT---C-HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccc---c-HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 210 0 00000235667777777662 5899999999999986543
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.80 E-value=1.1e-19 Score=148.21 Aligned_cols=165 Identities=21% Similarity=0.176 Sum_probs=110.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC-------CCCCC----CCC---ceeeeeeE-EEEECCEEEEEEEEeCCCcccccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN-------KFPTD----YIP---TVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNR 71 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~-------~~~~~----~~~---~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~ 71 (210)
..++|+++|.+++|||||+++|... .+... ..+ ..+.+... ...+......+.+||+||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 5789999999999999999999863 11100 000 00111111 112333346788999999999988
Q ss_pred cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (210)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
.....+..+|++|+|+|+++....+.. .++..+.. .++| +++++||+|+..... ......+++.+++.
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~--~~vp~iivviNK~Dl~~~~~-------~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQ--IGVEHVVVYVNKADAVQDSE-------MVELVELEIRELLT 150 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHH--TTCCCEEEEEECGGGCSCHH-------HHHHHHHHHHHHHH
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCeEEEEEECcccCCCHH-------HHHHHHHHHHHHHH
Confidence 778889999999999999986443332 22233333 3678 789999999974211 00023356677777
Q ss_pred HcCC----cEEEEeccCCCCC----------HHHHHHHHHHHHhCC
Q 028362 151 QIGA----SYYIECSSKTQQN----------VKAVFDAAIKVVIKP 182 (210)
Q Consensus 151 ~~~~----~~~~~~Sa~~~~~----------i~~~~~~i~~~~~~~ 182 (210)
.++. .+++++||+++.| ++++++.+.+.+..+
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 7763 4899999999764 899999998877644
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.80 E-value=7.4e-20 Score=150.77 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=102.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCC--CCCC----------CCCceeeee-------------------eEE-EEEC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTD----------YIPTVFDNF-------------------SAN-VVAE 52 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~--~~~~----------~~~~~~~~~-------------------~~~-~~~~ 52 (210)
.+..++|+++|.+++|||||+++|.... +... ..++....+ ... ..+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3466999999999999999999998543 1111 011111100 000 1122
Q ss_pred CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc
Q 028362 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 132 (210)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 132 (210)
.....+.+||+||+++|...+..++..+|++|+|+|++++...+. ..++..+... ...|+++|+||+|+.....
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~--- 174 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL-GIKHIVVAINKMDLNGFDE--- 174 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT-TCCEEEEEEECTTTTTSCH---
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc-CCCeEEEEEEcCcCCcccH---
Confidence 234678899999999998888888999999999999988653322 3344444332 1236899999999975311
Q ss_pred CCCCCCccCHHHHHHHHHHcC--C--cEEEEeccCCCCCHHHH
Q 028362 133 DHPGLVPVTTAQGEELRKQIG--A--SYYIECSSKTQQNVKAV 171 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~Sa~~~~~i~~~ 171 (210)
.......++...++..++ . .+++++||++|.|++++
T Consensus 175 ---~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 175 ---RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp ---HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred ---HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 000013455666777766 1 47899999999999874
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.80 E-value=3.9e-21 Score=159.63 Aligned_cols=157 Identities=20% Similarity=0.289 Sum_probs=104.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 84 (210)
++..+|+++|++++|||||+++|....+.....+....... ..+..++ ..+++|||||++.|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 46789999999999999999999875443332222211111 1122233 46788999999999999999999999999
Q ss_pred EEEECCCh---hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccc-cccCCCCCCccCHHHHHHHHHHcC-CcEEEE
Q 028362 85 LAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH-YLADHPGLVPVTTAQGEELRKQIG-ASYYIE 159 (210)
Q Consensus 85 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 159 (210)
+|+|+++. ++.+.+ ..+.. .++|+++++||+|+..... ........... ++..++ ..++++
T Consensus 80 LVVda~~g~~~qT~e~l-----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~-------~~~~~~~~~~~v~ 145 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGI-------LPEEWGGESQFVH 145 (501)
T ss_dssp EEEETTTBSCTTTHHHH-----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCC-------CTTCCSSSCEEEE
T ss_pred EEeecccCccHHHHHHH-----HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhh-------hHHHhCCCccEEE
Confidence 99999874 333322 22222 4789999999999975421 00000000000 111122 248999
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 028362 160 CSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 160 ~Sa~~~~~i~~~~~~i~~~ 178 (210)
+||++|.|++++|+++...
T Consensus 146 vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 146 VSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CCTTTCTTCTTHHHHTTTT
T ss_pred EeeeeccCcchhhhhhhhh
Confidence 9999999999999998753
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.79 E-value=8.7e-20 Score=143.21 Aligned_cols=160 Identities=19% Similarity=0.161 Sum_probs=101.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCC------CCCcee--------------------eeee-------------
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD------YIPTVF--------------------DNFS------------- 46 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~------~~~~~~--------------------~~~~------------- 46 (210)
...++|+|+|.+|||||||+|+|.+..+.+. ..|+.. .++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 3568999999999999999999998876421 123210 0000
Q ss_pred -----------EEEEEC-CEEEEEEEEeCCCccc-------------ccccCcccccCccEEE-EEEECCChhHHHHHHH
Q 028362 47 -----------ANVVAE-GTTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFV-LAFSLVSRASYENVLK 100 (210)
Q Consensus 47 -----------~~~~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~ 100 (210)
..+.+. .....+.+|||||... +..++..+++.++.++ +|+|+++..+.... .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-H
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-H
Confidence 000000 0125789999999642 3345556777888766 79999876544332 2
Q ss_pred HHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH--cCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362 101 KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--IGASYYIECSSKTQQNVKAVFDAAIKV 178 (210)
Q Consensus 101 ~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 178 (210)
.++..+.. .+.|+++|+||+|+..... ...+.+...... .+..+++++||+++.|++++++++.+.
T Consensus 183 ~~~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 KIAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHCT--TCSSEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHhCC--CCCeEEEEEEccccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 44555443 4689999999999975432 122222110001 122367789999999999999998763
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.78 E-value=4.4e-19 Score=146.95 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=102.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcC--CCCCC-------------------------------CCCceeeeeeEEEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD-------------------------------YIPTVFDNFSANVVA 51 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~-------------------------------~~~~~~~~~~~~~~~ 51 (210)
.+..++|+++|.+++|||||+++|... .+... .-.|....+ . .+
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~-~--~~ 80 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL-W--KF 80 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC-E--EE
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE-E--EE
Confidence 457799999999999999999999853 22110 001111111 1 12
Q ss_pred CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh---HHH---HHHHHHHHHHhccCCCCc-EEEEeeCccc
Q 028362 52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYE---NVLKKWIPELQHYSPGVP-VVLVGTKLDL 124 (210)
Q Consensus 52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~D~ 124 (210)
....+.+.+||+||+++|...+...+..+|++|+|+|+++.. +|+ .. ...+..+.. .++| +++|+||+|+
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt-~~~~~~~~~--~~v~~iivviNK~Dl 157 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT-REHALLAFT--LGVRQLIVAVNKMDS 157 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH-HHHHHHHHH--TTCCEEEEEEECGGG
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhH-HHHHHHHHH--cCCCeEEEEEEcccc
Confidence 233467899999999999888888899999999999998763 221 11 222222222 3565 8999999999
Q ss_pred ccccccccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHH
Q 028362 125 REDKHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAV 171 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 171 (210)
..... .......+++..++..++. .+++++||++|.|++++
T Consensus 158 ~~~~~------~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 158 VKWDE------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GTTCH------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccCCH------HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 74211 0000234556666676663 48999999999998753
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.78 E-value=6.1e-20 Score=152.40 Aligned_cols=159 Identities=19% Similarity=0.147 Sum_probs=90.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHc--CCCCC-------------------------------CCCCceeeeeeEEEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPT-------------------------------DYIPTVFDNFSANVVA 51 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~~-------------------------------~~~~~~~~~~~~~~~~ 51 (210)
.+..++|+++|..++|||||+++|.. +.+.. ..-.|....+ ..+..
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~-~~~~~ 118 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR-AYFET 118 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C-CEEEC
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee-EEEec
Confidence 45679999999999999999999974 22210 0001111110 01222
Q ss_pred CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh---HHHHH--HHHHHHHHhccCCCCc-EEEEeeCcccc
Q 028362 52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENV--LKKWIPELQHYSPGVP-VVLVGTKLDLR 125 (210)
Q Consensus 52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~~p-iilv~nK~D~~ 125 (210)
+ ...+.+||+||+++|...+...+..+|++|+|+|+++.. +|... ....+..+.. .++| +++++||+|+.
T Consensus 119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEP 194 (467)
T ss_dssp S--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTST
T ss_pred C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCC
Confidence 3 367889999999999998888999999999999999863 22210 1111222222 3577 99999999996
Q ss_pred cccccccCCCCCCccCHHHHHHHHHHc-C-----CcEEEEeccCCCCCHHHHH
Q 028362 126 EDKHYLADHPGLVPVTTAQGEELRKQI-G-----ASYYIECSSKTQQNVKAVF 172 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~Sa~~~~~i~~~~ 172 (210)
.... + ........++...++..+ + ..+++++||++|.|+++++
T Consensus 195 ~~~~---~-~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQW---S-EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSS---C-HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred Cccc---c-HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 4210 0 000002334566666665 3 2479999999999998765
No 171
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.78 E-value=7.8e-19 Score=149.78 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=100.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-------------------------------CCceeeee-eEEEEEC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-------------------------------IPTVFDNF-SANVVAE 52 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~-~~~~~~~ 52 (210)
.+..++|+++|.+++|||||+++|......-.. .+.+.... ...+ .
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~--~ 241 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--S 241 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE--E
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE--e
Confidence 356799999999999999999999865211000 00000000 1112 2
Q ss_pred CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhH---H--HHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y--ENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~--~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
...+.+.+|||||+++|...+...+..+|++|+|+|++++.. + .......+..+... ...|+++|+||+|+...
T Consensus 242 ~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 242 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp CSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-TCCEEEEEEECTTTTTT
T ss_pred cCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-CCCeEEEEEecccccch
Confidence 234678899999999999888889999999999999987521 0 01112222222221 22459999999999763
Q ss_pred cccccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHH
Q 028362 128 KHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAV 171 (210)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 171 (210)
.... .....+++..+....+. .+++++||++|.|++++
T Consensus 321 ~~~~------~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQR------FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHH------HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHH------HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2100 00123444555555543 48999999999999876
No 172
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.78 E-value=4.5e-19 Score=142.95 Aligned_cols=150 Identities=11% Similarity=0.013 Sum_probs=103.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (210)
+|+++|.+++|||||+++|... -.|....+ ..+....+.+.+||+||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~------giTi~~~~---~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK------GTSSDITM---YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE------EEESSSEE---EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC------CEEEEeeE---EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 8999999999999999999811 11111111 1223334568999999999998777778899999999999
Q ss_pred CChhHHHHHHHHHHHHHhccCCCCcE-EEEee-CcccccccccccCCCCCCccCHHHHHHHHHHcC--CcEEEE--eccC
Q 028362 90 VSRASYENVLKKWIPELQHYSPGVPV-VLVGT-KLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYYIE--CSSK 163 (210)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~Sa~ 163 (210)
+... .... ..++..+... ++|. ++++| |+|+ +... .....+++.++...++ ..++++ +||+
T Consensus 93 ~~g~-~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~--------~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~ 159 (370)
T 2elf_A 93 PQGL-DAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHA--------IDELKAKLKVITSGTVLQDWECISLNTNKS 159 (370)
T ss_dssp TTCC-CHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHH--------HHHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred CCCC-cHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHH--------HHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 5432 2222 4555454443 5677 88888 9999 4321 0011245555555443 358999 9999
Q ss_pred C---CCCHHHHHHHHHHHHhCC
Q 028362 164 T---QQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 164 ~---~~~i~~~~~~i~~~~~~~ 182 (210)
+ +.|++++++.+.+.+...
T Consensus 160 ~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 160 AKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp SSSTTTTHHHHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHhhcccc
Confidence 9 999999999998877543
No 173
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.78 E-value=1e-19 Score=143.12 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=109.3
Q ss_pred HHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh-HHHHHHH
Q 028362 23 CMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLK 100 (210)
Q Consensus 23 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 100 (210)
+|+.++..+.|. ..+.||+++.+......++ .+.+||+ +++|+.++..+++++|++|+|||++++. ++..+ .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 678888888898 8889999877664432232 6889999 9999999999999999999999999987 67665 7
Q ss_pred HHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-cEEEEeccCCCCCHHHHHHHHHH
Q 028362 101 KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 101 ~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~ 177 (210)
.|+..+.. .++|++||+||+|+.+... + +++..++..++. .+++++||+++.|++++|..+..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 88887765 4799999999999975432 2 456677777662 37899999999999999988754
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.78 E-value=7.3e-19 Score=130.95 Aligned_cols=161 Identities=14% Similarity=-0.001 Sum_probs=98.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCccc----------ccccCc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED----------YNRLRP 74 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~----------~~~~~~ 74 (210)
.+..+|+|+|++|||||||++++.+..+.....|+.+..... .+.+++ .+.+||+||... ++....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 455799999999999999999999776444334444443321 222222 467899999743 222222
Q ss_pred ccc---cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362 75 LSY---RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (210)
Q Consensus 75 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (210)
.++ ..++++++++|++++.+.... .+...+.. .++|+++|+||+|+..... .....+.+..++..
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~--~~~~~~~v~nK~D~~s~~~--------~~~~~~~~~~~~~~ 168 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD--SNIAVLVLLTKADKLASGA--------RKAQLNMVREAVLA 168 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHGG
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEecccCCCchh--------HHHHHHHHHHHHHh
Confidence 233 468999999999886554321 22222222 4689999999999865321 00123455555555
Q ss_pred cC-CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 152 IG-ASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 152 ~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
.+ ...++++||+++.|++++++++.+.+.+
T Consensus 169 ~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 169 FNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 54 3467889999999999999999887654
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.77 E-value=1.6e-18 Score=133.82 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=83.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCccccc-----
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR----- 78 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----- 78 (210)
.+.++|+++|.+|+|||||+++|.+... ...+.+++..........++ ..+.+|||||++++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 4679999999999999999999998764 23333333333333444555 47888999999888766555543
Q ss_pred ----CccEEEEEEECCChhHHHHHHHHHHHHHhccC-C--CCcEEEEeeCcccccc
Q 028362 79 ----GADVFVLAFSLVSRASYENVLKKWIPELQHYS-P--GVPVVLVGTKLDLRED 127 (210)
Q Consensus 79 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~piilv~nK~D~~~~ 127 (210)
.++++++|++++... +......|+..+.... . ..|+++|+||+|+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999987654 4333245665555443 2 3499999999998643
No 176
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.77 E-value=2.4e-19 Score=152.51 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=83.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCCceeeeeeEEEEECC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----------------------------DYIPTVFDNFSANVVAEG 53 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 53 (210)
.+..++|+++|.+++|||||+++|+.. .+.. ...+.+..... ...+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~-~~~~~~ 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVA-STTFES 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEee-EEEEEe
Confidence 456799999999999999999999631 1100 00111111110 011222
Q ss_pred EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh---HH--HHHHHHHHHHHhccCCCCc-EEEEeeCcccccc
Q 028362 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SY--ENVLKKWIPELQHYSPGVP-VVLVGTKLDLRED 127 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~ 127 (210)
....+.+|||||+++|...+...+..+|++|+|+|++++. .+ .......+..+.. .++| +|+|+||+|+...
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGTT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEeccccccc
Confidence 3467899999999999998888999999999999998532 11 1111122222222 2455 9999999999752
Q ss_pred cccccCCCCCCccCHHHHHHHH-HHcCC----cEEEEeccCCCCCHH
Q 028362 128 KHYLADHPGLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQNVK 169 (210)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~ 169 (210)
.. ........++..+. ...+. .+++++||++|.|++
T Consensus 331 ~~------~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 331 SE------DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CH------HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cH------HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 21 00001223444444 33443 379999999999998
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.76 E-value=5.7e-19 Score=156.93 Aligned_cols=168 Identities=16% Similarity=0.141 Sum_probs=111.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcC-------CCCC-------CCCCceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSN-------KFPT-------DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED 68 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~-------~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~ 68 (210)
..+..++|+++|.+++|||||+++|... .+.. ....+.+.++.. ...++.....+.+|||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 3456799999999999999999999863 1100 001111111110 122333446788999999999
Q ss_pred ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (210)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (210)
|.......+..+|++|+|+|+++....+. ..++..+.. .++| +|+++||+|+..... ......+++..
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QT--rEhL~ll~~--lgIP~IIVVINKiDLv~d~e-------~le~i~eEi~e 440 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQ--VGVPYIIVFLNKCDMVDDEE-------LLELVEMEVRE 440 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTH--HHHHHHHHH--HTCSCEEEEEECCTTCCCHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHH--HHHHHHHHH--cCCCeEEEEEeecccccchh-------hHHHHHHHHHH
Confidence 98888888999999999999988643332 233344433 2578 789999999975321 00023356677
Q ss_pred HHHHcCC----cEEEEeccCCC--------CCHHHHHHHHHHHHhCC
Q 028362 148 LRKQIGA----SYYIECSSKTQ--------QNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 148 ~~~~~~~----~~~~~~Sa~~~--------~~i~~~~~~i~~~~~~~ 182 (210)
+...++. .+++++||+++ .|++++++.+.+.+..+
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 7777663 48999999999 46889998888766543
No 178
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.74 E-value=9.5e-18 Score=129.98 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=80.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcc--------
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL-------- 75 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------- 75 (210)
...++|+++|.+|+|||||+|+|.+..+. ....++............ .+.+.+|||||+.++......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35799999999999999999999987652 222222222222223333 367889999999877543331
Q ss_pred -cccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CC--CcEEEEeeCcccccc
Q 028362 76 -SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PG--VPVVLVGTKLDLRED 127 (210)
Q Consensus 76 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~piilv~nK~D~~~~ 127 (210)
..+.+|++++|+|++.. ++......|+..+.... .+ .|+++|+||+|+...
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 13469999999998653 34333346666665442 22 699999999998654
No 179
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.74 E-value=6.1e-19 Score=138.63 Aligned_cols=162 Identities=13% Similarity=0.105 Sum_probs=86.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC-CCCCCCC--------Cceeee-eeEEEEECCEEEEEEEEeCCCc-------ccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN-KFPTDYI--------PTVFDN-FSANVVAEGTTVNLGLWDTAGQ-------EDY 69 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~-~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~i~D~~G~-------~~~ 69 (210)
-.++|+|+|++|||||||++++.+. .+..... ++.... ........+....+++||++|+ +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3589999999999999999998865 4433221 121111 1111222445578999999998 555
Q ss_pred cccCc-------ccccCc-------------cEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccc
Q 028362 70 NRLRP-------LSYRGA-------------DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129 (210)
Q Consensus 70 ~~~~~-------~~~~~~-------------~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 129 (210)
+.+.. .+++.. ++++++.+.+. .+++..... .+.....+.|+++|+||.|+.....
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~---~l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVA---FMKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHH---HHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHH---HHHHHHhcCCEEEEEEeCCCCCHHH
Confidence 44433 333222 23444443322 234443222 3333335689999999999965422
Q ss_pred cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 130 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.....+++.+++..+++ +++++||+++ |++++|.++.+.+...
T Consensus 173 --------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 173 --------RERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp --------HHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcC
Confidence 00234677888888886 8899999999 9999999999988654
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.74 E-value=9e-18 Score=145.29 Aligned_cols=172 Identities=13% Similarity=0.150 Sum_probs=106.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCcee----eee----eEEEEE-CCE----------------------
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVF----DNF----SANVVA-EGT---------------------- 54 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~----~~~----~~~~~~-~~~---------------------- 54 (210)
..++|+|+|.+|+|||||+|+|.+..+.+ ...|++. ..+ ..+..+ ++.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 56899999999999999999999876432 2233331 000 001111 000
Q ss_pred -----------------------E--EEEEEEeCCCccc---ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHH
Q 028362 55 -----------------------T--VNLGLWDTAGQED---YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL 106 (210)
Q Consensus 55 -----------------------~--~~~~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 106 (210)
. ..+.+|||||... ....+..+++.+|++|+|+|++++.+..+. ..|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence 0 2588999999654 334556678899999999999988777665 5565555
Q ss_pred hccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH-----HHHHcC-------CcEEEEeccC-----------
Q 028362 107 QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIG-------ASYYIECSSK----------- 163 (210)
Q Consensus 107 ~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-------~~~~~~~Sa~----------- 163 (210)
.. .+.|+++|+||+|+....................... +....+ ..+++++||+
T Consensus 227 ~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 227 KG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp TT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred Hh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 43 3678999999999975431000000000000001111 111111 1368899999
Q ss_pred ---CCCCHHHHHHHHHHHHhC
Q 028362 164 ---TQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 164 ---~~~~i~~~~~~i~~~~~~ 181 (210)
++.|+++++.++.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.74 E-value=1.1e-17 Score=144.16 Aligned_cols=118 Identities=17% Similarity=0.091 Sum_probs=81.0
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----------------eeeee-eEEEEECCEEEEEEEEeCCCc
Q 028362 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----------------VFDNF-SANVVAEGTTVNLGLWDTAGQ 66 (210)
Q Consensus 4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~i~D~~G~ 66 (210)
...+..+|+|+|+.|+|||||+++|...........+ .+..+ .....+....+.+++||+||+
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 3456789999999999999999999843221000000 01111 111222223478889999999
Q ss_pred ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (210)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 125 (210)
.+|...+..+++.+|++++|+|+++...... ..++..+.. .++|+++|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt--~~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT--ERAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhH--HHHHHHHHH--ccCCEEEEecCCchh
Confidence 9998888889999999999999987654433 344444433 368999999999986
No 182
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.74 E-value=2.1e-17 Score=138.74 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=78.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC--CCCCC--------CCC----------ceeeeee-EEEEECCEEEEEEEEeCC
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD--------YIP----------TVFDNFS-ANVVAEGTTVNLGLWDTA 64 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~~~--------~~~----------~~~~~~~-~~~~~~~~~~~~~i~D~~ 64 (210)
.+..+|+|+|.+|+|||||+++|... .+... ... +.+.++. ....+....+.+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 46799999999999999999999963 12100 000 1111110 011122234778899999
Q ss_pred CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
|+.+|...+..+++.+|++|+|+|+++...... ..+...+.. .++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence 999998888888999999999999987643322 333333332 47899999999998654
No 183
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.73 E-value=3.3e-17 Score=141.72 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=82.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHc--CCCC------C------------CCCCceeeeeeEEEEECCEEEEEEEEeCC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFP------T------------DYIPTVFDNFSANVVAEGTTVNLGLWDTA 64 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 64 (210)
..+..+|+|+|.+|+|||||+++|.. +.+. . ...+|.... ...+... .+.+.+||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDTP 85 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDTP 85 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEECc
Confidence 35679999999999999999999983 2211 0 011111111 1122233 3778899999
Q ss_pred CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
|+.+|...+..+++.+|++|+|+|+++..+.... ..|... .. .++|+++|+||+|+...
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~~-~~--~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQA-EK--YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHH-HH--TTCCEEEEEECTTSTTC
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHHH-HH--cCCCEEEEEECCCcccC
Confidence 9999998889999999999999999988777654 445433 22 37899999999998754
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.73 E-value=3.9e-17 Score=133.13 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=103.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCC-CceeeeeeEEEEECCEEEEEEEEeCCCcccc----cccCccc---ccCc
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNKFP-TDYI-PTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRPLS---YRGA 80 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~ 80 (210)
.|+|+|++|||||||++++.+.... ..+. .|..... ..+..++ ...+.+||+||.... ..+...+ +..+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~-G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNL-GVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEE-EEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceeccee-eEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 4789999999999999999876421 1111 1111111 1122232 246788999997532 2232222 3468
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362 81 DVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (210)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
+.+++++|++ ...+.++ ..+...+.... ...|.++|+||+|+... . ..+.+.......+. ++
T Consensus 237 ~~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-----------~~~~l~~~l~~~g~-~v 301 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-----------AVKALADALAREGL-AV 301 (416)
T ss_dssp SEEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-----------HHHHHHHHHHTTTS-CE
T ss_pred HhhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-----------HHHHHHHHHHhcCC-eE
Confidence 9999999997 4455554 44544444433 36899999999999643 1 23344444444454 78
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362 158 IECSSKTQQNVKAVFDAAIKVVIKPPQ 184 (210)
Q Consensus 158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 184 (210)
+.+||+++.|++++++++.+.+.....
T Consensus 302 i~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 302 LPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred EEEECCCccCHHHHHHHHHHHHHhccc
Confidence 899999999999999999999976543
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.71 E-value=4.8e-18 Score=134.31 Aligned_cols=164 Identities=16% Similarity=0.141 Sum_probs=96.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCC------CCceeeeeeE--------------------------------
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY------IPTVFDNFSA-------------------------------- 47 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~-------------------------------- 47 (210)
...++|+|+|.+|||||||+|+|.+..+.+.. .|+.......
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 35679999999999999999999988752211 1210000000
Q ss_pred ------E--------------EE-ECCEEEEEEEEeCCCccc-------------ccccCcccccCccEEEEEEECCChh
Q 028362 48 ------N--------------VV-AEGTTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFVLAFSLVSRA 93 (210)
Q Consensus 48 ------~--------------~~-~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~ 93 (210)
. +. .......+.+|||||... +...+..++..+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0 00 011124688999999754 3345556788999999999985432
Q ss_pred HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec---cCC---CCC
Q 028362 94 SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS---SKT---QQN 167 (210)
Q Consensus 94 s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S---a~~---~~~ 167 (210)
........+...+.. .+.|+++|+||+|+..... ...+.+.......+ ..++++| +.+ +.|
T Consensus 182 ~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~----------~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~g 248 (315)
T 1jwy_B 182 LANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGT----------DAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKS 248 (315)
T ss_dssp STTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSC----------CCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCC
T ss_pred hhhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcch----------HHHHHHhCCCccCC-CCeEEEecCChhhhccCCC
Confidence 110101233334433 4689999999999975432 12222221001111 2455554 444 789
Q ss_pred HHHHHHHHHHHHhCC
Q 028362 168 VKAVFDAAIKVVIKP 182 (210)
Q Consensus 168 i~~~~~~i~~~~~~~ 182 (210)
+++++..+.+.+...
T Consensus 249 v~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 249 IRESLKSEILYFKNH 263 (315)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999988887654
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=133.51 Aligned_cols=159 Identities=12% Similarity=0.083 Sum_probs=83.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC--------CCceeeee-eEEEEECCEEEEEEEEeCCCcccccc-------
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY--------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR------- 71 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~------- 71 (210)
.++|+|+|++|||||||++.|.+..+.... .++..... .......+....+++||++|...+..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 478999999999999999999987653211 12221111 11111234445789999999865411
Q ss_pred ------------------cCcccccCccEEEEEEECCCh-hHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc
Q 028362 72 ------------------LRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 132 (210)
Q Consensus 72 ------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 132 (210)
+...++.++++.+++|++..- .++......|+..+. .++|+|+|+||+|+.....
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e--- 184 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE--- 184 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH---
Confidence 123455667766666666543 345554335666664 3789999999999865432
Q ss_pred CCCCCCccCH--HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 133 DHPGLVPVTT--AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 133 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
+.. +.+.+++..+++ +++++|++++.+++++|..+...+.
T Consensus 185 -------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 185 -------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp -------HHHHHHHHHHHHHHHTC-CCCCCC-----------------CC
T ss_pred -------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 332 567777788886 7789999999999998888876543
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.70 E-value=4.3e-16 Score=134.98 Aligned_cols=118 Identities=16% Similarity=0.080 Sum_probs=83.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcC--CCCCC------------------CCCceeeeeeEEEEE-----CCEEEEEE
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD------------------YIPTVFDNFSANVVA-----EGTTVNLG 59 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~ 59 (210)
..+..+|+|+|..|+|||||+++|... .+... .-.|.... ...+.. ++..+.+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEE
Confidence 456789999999999999999999742 22110 00111111 011222 23448899
Q ss_pred EEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 60 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
+|||||+.+|...+..+++.+|++|+|+|+++....... ..|.. +.. .++|+++|+||+|+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~-~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQ-ANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEeCCCcccc
Confidence 999999999998888999999999999999987655443 33432 222 37899999999998654
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.70 E-value=6.6e-18 Score=136.00 Aligned_cols=154 Identities=18% Similarity=0.140 Sum_probs=99.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee---eee-----------eE-------------------------
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF---DNF-----------SA------------------------- 47 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~---~~~-----------~~------------------------- 47 (210)
...+|+|+|++|||||||+++|.+..+.+....+.. ... ..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 446999999999999999999999776332211110 000 00
Q ss_pred --------------EEEE-CCEEEEEEEEeCCCcccc-------------cccCcccccCccEEEEEEECCChhHHHHHH
Q 028362 48 --------------NVVA-EGTTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAFSLVSRASYENVL 99 (210)
Q Consensus 48 --------------~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 99 (210)
...+ ......+++||+||..++ ..+...++.+++++|+|+|.++.....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---
Confidence 0000 011235789999998776 445567789999999999876543222
Q ss_pred HHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHH
Q 028362 100 KKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174 (210)
Q Consensus 100 ~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 174 (210)
..|+..+.... .+.|+++|+||+|+..... ...+.+..+...++. +|+.+|+.++.++++.+..
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHHhccCCCH
Confidence 23333444333 4689999999999976543 334444444444554 7889999998888765544
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.69 E-value=4.1e-16 Score=134.91 Aligned_cols=116 Identities=18% Similarity=0.121 Sum_probs=82.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHc--CCCCCC------------------CCCceeeeeeEEEEECCEEEEEEEEeCC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPTD------------------YIPTVFDNFSANVVAEGTTVNLGLWDTA 64 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 64 (210)
..+..+|+|+|.+|+|||||+++|.. +.+... ...|.... ...+..++ +.+.+||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDTP 83 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSA-ATTAAWEG--HRVNIIDTP 83 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCS-EEEEEETT--EEEEEECCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeee-eEEEEECC--eeEEEEECc
Confidence 45789999999999999999999984 322110 00011000 11223333 678899999
Q ss_pred CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
|+.+|...+..+++.+|++|+|+|+++..+.... ..|.. +.. .++|+++|+||+|+...
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~-~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQ-ATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTC
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEECCCcccc
Confidence 9999988888899999999999999987766654 44443 333 37899999999998754
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.68 E-value=1.4e-16 Score=119.58 Aligned_cols=155 Identities=15% Similarity=0.043 Sum_probs=95.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee------------EE-EEEC------------------CEE
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS------------AN-VVAE------------------GTT 55 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~-~~~~------------------~~~ 55 (210)
+..+|+++|.+|||||||+++|...............++. .. ..++ ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4579999999999999999999865321111111100000 00 1111 123
Q ss_pred EEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCC
Q 028362 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 135 (210)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~ 135 (210)
+.+.+||++|+..... .+...++.+++|+|+++..... ..+...+ +.|+++|+||+|+.....
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~---~~~~~~~-----~~~~iiv~NK~Dl~~~~~------ 171 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVV---EKHPEIF-----RVADLIVINKVALAEAVG------ 171 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHH---HHCHHHH-----HTCSEEEEECGGGHHHHT------
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhh---hhhhhhh-----hcCCEEEEecccCCcchh------
Confidence 5678899999521111 1112567899999987654211 1122221 478899999999975422
Q ss_pred CCCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 136 GLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
...++........+ ..+++++||+++.|++++++++.+.+...
T Consensus 172 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 172 ----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp ----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred ----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 34556666665543 34889999999999999999999887654
No 191
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.67 E-value=1.9e-16 Score=128.67 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=47.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeeeE---E-----------------EEECC-EEEEEEEEeCCC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSA---N-----------------VVAEG-TTVNLGLWDTAG 65 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~---~-----------------~~~~~-~~~~~~i~D~~G 65 (210)
++|+|+|.+|||||||+|+|.+........| |....... . ..+++ ..+.+.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763222222 11111111 0 01232 357899999999
Q ss_pred ccc----ccccCc---ccccCccEEEEEEECCCh
Q 028362 66 QED----YNRLRP---LSYRGADVFVLAFSLVSR 92 (210)
Q Consensus 66 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 92 (210)
+.. .+.+.. ..++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 854 222333 457899999999999875
No 192
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.66 E-value=1.4e-17 Score=125.38 Aligned_cols=153 Identities=17% Similarity=0.090 Sum_probs=92.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-------------EEEEEC-CEE-----------------
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-------------ANVVAE-GTT----------------- 55 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~----------------- 55 (210)
+.++|+|+|.+|||||||+++|....+...+.++...++. ....++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 5689999999999999999999987665544555544332 111111 111
Q ss_pred --EEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC
Q 028362 56 --VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 133 (210)
Q Consensus 56 --~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~ 133 (210)
..+.++|++|.-.... .+-...+..+.+.|......... .+...+ ..|.++|+||+|+.....
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~~-----~~~~iiv~NK~Dl~~~~~---- 181 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGIM-----KTADLIVINKIDLADAVG---- 181 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHHH-----TTCSEEEEECGGGHHHHT----
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhHh-----hcCCEEEEeccccCchhH----
Confidence 1344455555211000 01112334556666432211110 011111 468899999999976432
Q ss_pred CCCCCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 134 HPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
...+++..++..++ ..+++++||+++.|++++|+++.+.+.
T Consensus 182 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 182 ------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp ------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 45666777776653 348999999999999999999988764
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.61 E-value=7.2e-17 Score=129.61 Aligned_cols=158 Identities=20% Similarity=0.189 Sum_probs=92.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCC------CCCcee--------------------eeee--------------
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD------YIPTVF--------------------DNFS-------------- 46 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~------~~~~~~--------------------~~~~-------------- 46 (210)
..++|+|+|.+|||||||+|+|.+..+.+. ..|+.. .++.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999998876421 123210 0000
Q ss_pred ----------EEEEEC-CEEEEEEEEeCCCccc-------------ccccCcccccCccEEE-EEEECCChhHHHHHHHH
Q 028362 47 ----------ANVVAE-GTTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFV-LAFSLVSRASYENVLKK 101 (210)
Q Consensus 47 ----------~~~~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~ 101 (210)
..+.+. .....+++|||||... +..+...++..++.++ +|.|.+....-... ..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence 000010 1135689999999642 3345555666665454 45565432221111 12
Q ss_pred HHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH--HHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 028362 102 WIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE--LRKQIGASYYIECSSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 102 ~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 177 (210)
++..+.. .+.|+++|+||+|+..... ...+.... +....+..+++.+||+++.|++++++++.+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcch----------hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3333332 4789999999999975432 11111110 000112235678999999999999998876
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.61 E-value=2.3e-14 Score=114.54 Aligned_cols=82 Identities=22% Similarity=0.212 Sum_probs=55.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeeeEEEEECCE---------------EEEEEEEeCCCccccc-
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVVAEGT---------------TVNLGLWDTAGQEDYN- 70 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~- 70 (210)
++|+|+|.+|||||||+|+|.+........| |...... .+.+++. ...+++||+||+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g-~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG-VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS-EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE-EEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 7899999999999999999998764322222 2222221 2333332 2578999999998763
Q ss_pred ---ccCcc---cccCccEEEEEEECCC
Q 028362 71 ---RLRPL---SYRGADVFVLAFSLVS 91 (210)
Q Consensus 71 ---~~~~~---~~~~~~~~i~v~d~~~ 91 (210)
.+... .++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 34433 3789999999999986
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.60 E-value=6.8e-16 Score=123.99 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=69.3
Q ss_pred EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC
Q 028362 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 134 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~ 134 (210)
.+.+.+|||||... .....+..+|++++|+|.........+ .....+.|+++|+||+|+.....
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l--------~~~~~~~p~ivVlNK~Dl~~~~~----- 234 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI--------KKGVLELADIVVVNKADGEHHKE----- 234 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC--------CTTSGGGCSEEEEECCCGGGHHH-----
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH--------HHhHhhcCCEEEEECCCCcChhH-----
Confidence 36788999999532 122345789999999998765544222 11112469999999999965421
Q ss_pred CCCCccCHHHHHHHHHH---cC------CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362 135 PGLVPVTTAQGEELRKQ---IG------ASYYIECSSKTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~---~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 181 (210)
.......+... .+ ..+++++||+++.|++++++++.+.+..
T Consensus 235 ------~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 235 ------ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp ------HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 11111222222 21 2478999999999999999999887753
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.59 E-value=3.4e-15 Score=131.65 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=85.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcC--CCCCC--------------CC--Cceeeee-eEEEE------------ECC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD--------------YI--PTVFDNF-SANVV------------AEG 53 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~--------------~~--~~~~~~~-~~~~~------------~~~ 53 (210)
..+..+|+|+|..++|||||+++|+.. ..... .. .|+.... ...+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 346789999999999999999999853 11100 00 1111111 11111 244
Q ss_pred EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (210)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 126 (210)
..+.+.+|||||+.+|...+..+++.+|++|+|+|++++.+++.. ..|..... .++|+++|+||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence 578999999999999999999999999999999999998777765 45554432 4689999999999974
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.57 E-value=3e-15 Score=126.33 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=78.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeeeeEE------EEECCE----------------------
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP---TDYIPTVFDNFSAN------VVAEGT---------------------- 54 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~------~~~~~~---------------------- 54 (210)
...++|+|+|.+|+|||||+|+|.+..+. ....|++....... ...+..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999988763 23333331100000 000000
Q ss_pred -E---------EEEEEEeCCCccc-----------ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCC
Q 028362 55 -T---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV 113 (210)
Q Consensus 55 -~---------~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 113 (210)
. ..+.+|||||... |...+..++..+|++|+|+|+++....... ..|+..+.. ...
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRG--HED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTT--CGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHh--cCC
Confidence 0 2578999999865 334445567889999999999875433333 456655543 357
Q ss_pred cEEEEeeCcccccc
Q 028362 114 PVVLVGTKLDLRED 127 (210)
Q Consensus 114 piilv~nK~D~~~~ 127 (210)
|+++|+||+|+...
T Consensus 220 pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 220 KIRVVLNKADMVET 233 (550)
T ss_dssp GEEEEEECGGGSCH
T ss_pred CEEEEEECCCccCH
Confidence 99999999999654
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.56 E-value=4.3e-15 Score=114.24 Aligned_cols=120 Identities=13% Similarity=-0.016 Sum_probs=67.8
Q ss_pred EEEEEEeCCCcccccccCc------ccccCccEEEEEEECCChhHHHHHHHHHHHHHh-ccCCCCcEEEEeeCccccccc
Q 028362 56 VNLGLWDTAGQEDYNRLRP------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDK 128 (210)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~ 128 (210)
+.+.+|||||+.+...... ..+.. +++++++|.....+.......+..... ....+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5789999999876543322 13355 788888887543222222111111111 111368999999999996542
Q ss_pred ccccCCCCCCcc--CHHHH------------------HHHHHHcCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 129 HYLADHPGLVPV--TTAQG------------------EELRKQIGA-SYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 129 ~~~~~~~~~~~~--~~~~~------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
.. .. .... ..+.. .+++..++. .+++++||+++.|++++++++.+.+.
T Consensus 188 ~~-~~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EK-ER---HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HH-HH---HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cH-HH---HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 10 00 0000 00000 001233332 37899999999999999999988764
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.53 E-value=2.1e-13 Score=109.55 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=53.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeeeEEEEECC-------------------EEEEEEEEeCCCcc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVVAEG-------------------TTVNLGLWDTAGQE 67 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~ 67 (210)
++|+|+|.+|||||||+|++.+........| |...+... ..+.+ ....+.+||+||..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~-~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV-VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE-EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee-EecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 6899999999999999999997542111111 22222111 11211 24578999999987
Q ss_pred cccc----cCc---ccccCccEEEEEEECCC
Q 028362 68 DYNR----LRP---LSYRGADVFVLAFSLVS 91 (210)
Q Consensus 68 ~~~~----~~~---~~~~~~~~~i~v~d~~~ 91 (210)
.+.+ +.. ..++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6532 222 23689999999999985
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=113.86 Aligned_cols=103 Identities=15% Similarity=0.086 Sum_probs=62.1
Q ss_pred EEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCC
Q 028362 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 135 (210)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~ 135 (210)
+.+.++||+|.... .......+|.+++|+|.+++.....+ .. .. -..|.++|+||+|+.....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~--~i-----l~~~~ivVlNK~Dl~~~~~------ 229 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR--GI-----IEMADLVAVTKSDGDLIVP------ 229 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH--HH-----HhcCCEEEEeeecCCCchh------
Confidence 56788999995321 23346789999999999876433222 11 11 2458899999999964311
Q ss_pred CCCccCHHHHHHHHHHc---------CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 136 GLVPVTTAQGEELRKQI---------GASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
.......+.... ...+++.+||+++.|++++++++.+.+.
T Consensus 230 -----~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 230 -----ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp -----HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 011122222211 1247789999999999999999988653
No 201
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.51 E-value=2.1e-13 Score=115.05 Aligned_cols=115 Identities=13% Similarity=0.029 Sum_probs=79.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc--CCCC------------CCCCCce------eeee---eEEEEECCEEEEEEEEeC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS--NKFP------------TDYIPTV------FDNF---SANVVAEGTTVNLGLWDT 63 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~--~~~~------------~~~~~~~------~~~~---~~~~~~~~~~~~~~i~D~ 63 (210)
+.-+|+|+|..++|||||..+|+. +... ....... +.++ ...+..++ +.++++||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 556899999999999999999972 1100 0000000 1111 11223344 77888999
Q ss_pred CCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 64 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
||+.+|.......++.+|++|+|+|+...-..+.. ..|.... . .++|.+++.||+|....
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~-~--~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCR-M--RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHH-H--TTCCEEEEEECTTSCCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHH-H--hCCceEEEEecccchhc
Confidence 99999999999999999999999999887655553 4454333 3 37999999999997654
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.48 E-value=1.4e-14 Score=115.66 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=65.7
Q ss_pred EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC
Q 028362 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 134 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~ 134 (210)
.+.+.+|||||....... ....+|++++|+|.+....+..+ .. .. .+.|.++|+||+|+.....
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l-~~--~~-----~~~p~ivv~NK~Dl~~~~~----- 211 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI-KK--GL-----MEVADLIVINKDDGDNHTN----- 211 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC-CH--HH-----HHHCSEEEECCCCTTCHHH-----
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH-HH--hh-----hcccCEEEEECCCCCChHH-----
Confidence 357889999997554322 46889999999999765432211 00 00 1468899999999965321
Q ss_pred CCCCccC--HHHHHHHHHHcC------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 135 PGLVPVT--TAQGEELRKQIG------ASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 135 ~~~~~~~--~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
.. .++........+ ..+++++||+++.|++++++++.+.+.
T Consensus 212 -----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 212 -----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp -----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11 112222222222 347889999999999999999988664
No 203
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.46 E-value=1.2e-12 Score=102.70 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=78.5
Q ss_pred cccccccCcccccCccEEEEEEECCChh-HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccC-HH
Q 028362 66 QEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT-TA 143 (210)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-~~ 143 (210)
++++..+...+++++|++++|+|++++. ++..+ ..|+..+.. .++|+++|+||+|+.+... +. .+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~~~~----------v~~~~ 132 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLNEEE----------KKELE 132 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCHHH----------HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCCccc----------cHHHH
Confidence 7788888888999999999999999986 77765 788877665 5799999999999965421 22 45
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 028362 144 QGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 176 (210)
Q Consensus 144 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 176 (210)
+...+.+..+. +++++||+++.|++++++.+.
T Consensus 133 ~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 133 RWISIYRDAGY-DVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHHHHHCCC-eEEEEECCCCCCHHHHHhhcc
Confidence 56666667776 889999999999999997764
No 204
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.43 E-value=9.4e-14 Score=101.80 Aligned_cols=108 Identities=6% Similarity=-0.058 Sum_probs=70.6
Q ss_pred eCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHH---HHHHhccC--CCCcEEEEeeCc-ccccccccccCCC
Q 028362 62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHYS--PGVPVVLVGTKL-DLREDKHYLADHP 135 (210)
Q Consensus 62 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~--~~~piilv~nK~-D~~~~~~~~~~~~ 135 (210)
+.+||..++.+|..|+.+.|++|||+|.+|++.++ ...++ ...+.... .++|++|++||. |++..
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A-------- 178 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-------- 178 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--------
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--------
Confidence 34489999999999999999999999999986443 33333 44444332 578999999995 67544
Q ss_pred CCCccCHHHHHHHHHH---cCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 136 GLVPVTTAQGEELRKQ---IGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.+..++.+.... ...+.+..|||++|+|+.+.++|+.+.+..+
T Consensus 179 ----ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 179 ----MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp ----CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred ----CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 333333322211 1345677899999999999999999877544
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.40 E-value=2.2e-13 Score=117.81 Aligned_cols=156 Identities=19% Similarity=0.142 Sum_probs=94.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCcee----ee-------------------------------------
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVF----DN------------------------------------- 44 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~----~~------------------------------------- 44 (210)
...+|+|+|.+++|||||+|+|.+..+ +....+++. ..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 567999999999999999999998765 211111110 00
Q ss_pred ----------eeEEEEECCEEEEEEEEeCCCcccc-------------cccCcccc-cCccEEEEEEECCChhHHHHHHH
Q 028362 45 ----------FSANVVAEGTTVNLGLWDTAGQEDY-------------NRLRPLSY-RGADVFVLAFSLVSRASYENVLK 100 (210)
Q Consensus 45 ----------~~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 100 (210)
....+... ....+.++||||-... ..+...++ ..+|++++|+|++......+. .
T Consensus 130 g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l 207 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L 207 (772)
T ss_dssp CSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-H
T ss_pred CCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-H
Confidence 00000000 1124778999996431 11222233 578999999999865332222 2
Q ss_pred HHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEEEEeccCCCCCHHHHHHHHH
Q 028362 101 KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYYIECSSKTQQNVKAVFDAAI 176 (210)
Q Consensus 101 ~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~ 176 (210)
.++..+.. .+.|+++|+||+|+..... .... ... ... ++..+++.+||+++.|++++++.+.
T Consensus 208 ~ll~~L~~--~g~pvIlVlNKiDlv~~~~----------~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~ 273 (772)
T 3zvr_A 208 KIAKEVDP--QGQRTIGVITKLDLMDEGT----------DARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 273 (772)
T ss_dssp HHHHHHCT--TCSSEEEEEECTTSSCTTC----------CSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHH
T ss_pred HHHHHHHh--cCCCEEEEEeCcccCCcch----------hhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHH
Confidence 34444443 3689999999999976532 1111 111 011 2334567799999999999999988
Q ss_pred HH
Q 028362 177 KV 178 (210)
Q Consensus 177 ~~ 178 (210)
+.
T Consensus 274 ~e 275 (772)
T 3zvr_A 274 AE 275 (772)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 206
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.38 E-value=8.3e-12 Score=100.31 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=84.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeeeEEEEECCEEEEEEEEeCCCccccccc-------CcccccC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-------RPLSYRG 79 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~ 79 (210)
..+|+|+|.||||||||+|+|.+..... ++..++.+.....+.+++ ..++++|+||...-... .-..++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 4689999999999999999999865332 222333333333455666 45778999996432111 1124678
Q ss_pred ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (210)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
+|++++|+|++++..-......-+..+...-.+.|.+++.||.|...-.. ...........++...+...+.
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i--~~~~~~~~l~~eeik~il~~~~ 221 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISI--TNTVPLTHLGNDEIRAVMSEYR 221 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEE--EESSCCSSCCHHHHHHHHHHTT
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhh--hcchhhhhccHHHHHHHHHHhc
Confidence 99999999999875433322222222222224678889999999643211 1111112245566666665554
No 207
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.38 E-value=5.8e-12 Score=109.46 Aligned_cols=118 Identities=17% Similarity=0.118 Sum_probs=79.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc--------CCCCCC--CCCce------eeee---eEEEEEC-----CEEEEEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS--------NKFPTD--YIPTV------FDNF---SANVVAE-----GTTVNLGLW 61 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~--------~~~~~~--~~~~~------~~~~---~~~~~~~-----~~~~~~~i~ 61 (210)
.+.-+|+|+|+.++|||||..+|+. +..... +..+. +.++ ...+... ..++.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 3566899999999999999999972 111110 01111 1111 1112222 246889999
Q ss_pred eCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 62 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
|||||-+|.......++-+|++|+|+|+...-..+.. ..|.+.... ++|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccCc
Confidence 9999999999889999999999999999876555443 344444333 6899999999997543
No 208
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.34 E-value=3e-13 Score=116.10 Aligned_cols=116 Identities=15% Similarity=0.043 Sum_probs=78.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc--CCCCCC----CCCce----------eeeee-EEEEECCEEEEEEEEeCCCccccc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS--NKFPTD----YIPTV----------FDNFS-ANVVAEGTTVNLGLWDTAGQEDYN 70 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~--~~~~~~----~~~~~----------~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~ 70 (210)
.-+|+|+|..++|||||..+|+. +..... .-.+. +.++. ......-+++.++++||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 45799999999999999999972 222110 00000 11110 011122244678899999999999
Q ss_pred ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
......++-+|++|+|+|+...-..+.. ..|...... ++|.+++.||+|....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSSC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEeccccccC
Confidence 9888999999999999999876544432 334433322 6899999999997654
No 209
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.29 E-value=3.5e-12 Score=97.92 Aligned_cols=108 Identities=7% Similarity=-0.060 Sum_probs=75.0
Q ss_pred eCCCcccccccCcccccCccEEEEEEECCChhHHHHHHH---HHHHHHhcc--CCCCcEEEEeeC-cccccccccccCCC
Q 028362 62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLK---KWIPELQHY--SPGVPVVLVGTK-LDLREDKHYLADHP 135 (210)
Q Consensus 62 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~~~~~--~~~~piilv~nK-~D~~~~~~~~~~~~ 135 (210)
+.+||+..+.+|..|+.+.|++|||+|.+|++.++ ... ++...+... -.++|++|++|| .|+...
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A-------- 263 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-------- 263 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--------
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--------
Confidence 35689999999999999999999999999987543 222 233444332 258999999996 588654
Q ss_pred CCCccCHHHHHHHHHH---cCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362 136 GLVPVTTAQGEELRKQ---IGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 182 (210)
.+..++.+.... ...+.+..|||.+|+|+.+.++|+.+.+..+
T Consensus 264 ----ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 264 ----MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp ----CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred ----CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 333333322111 1335667899999999999999999988654
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.27 E-value=4.2e-12 Score=101.09 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=62.9
Q ss_pred EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC
Q 028362 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 134 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~ 134 (210)
.+.+.++||+|...-. ......+|.+++|+|.........+ .... ...|.++++||+|+.....
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~~i-------~~~~~ivvlNK~Dl~~~~~----- 210 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KKGI-------FELADMIAVNKADDGDGER----- 210 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CTTH-------HHHCSEEEEECCSTTCCHH-----
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HHHH-------hccccEEEEEchhccCchh-----
Confidence 3568889999974321 1235689999999998654322111 0100 1235577789999743221
Q ss_pred CCCCccCHHHHHHHHHHc---C------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 135 PGLVPVTTAQGEELRKQI---G------ASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
......+.+.... . ..+++.+||+++.|++++++.+.+...
T Consensus 211 -----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 211 -----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp -----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222233333321 1 246788999999999999999987653
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.23 E-value=5.2e-12 Score=101.91 Aligned_cols=88 Identities=16% Similarity=0.073 Sum_probs=48.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCE---------------EEEEEEEeCCCccccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGT---------------TVNLGLWDTAGQEDYN 70 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~i~D~~G~~~~~ 70 (210)
..++|+|+|.+|||||||+|+|.+........|...... ...+.+.+. ...+++||+||...+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 457999999999999999999998765333333222111 122333321 2358999999987754
Q ss_pred c-------cCcccccCccEEEEEEECCChhH
Q 028362 71 R-------LRPLSYRGADVFVLAFSLVSRAS 94 (210)
Q Consensus 71 ~-------~~~~~~~~~~~~i~v~d~~~~~s 94 (210)
+ .+..+++++|++++|+|+++.++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 3 33456789999999999986443
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.12 E-value=1.2e-09 Score=88.38 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=55.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeee-eEEEEECCE---------------EEEEEEEeCCCcccc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNF-SANVVAEGT---------------TVNLGLWDTAGQEDY 69 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~i~D~~G~~~~ 69 (210)
...++.|+|++|||||||+|.|.+... .....|...... ...+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457999999999999999999998664 333333322111 223444431 135788999996442
Q ss_pred cc-------cCcccccCccEEEEEEECCC
Q 028362 70 NR-------LRPLSYRGADVFVLAFSLVS 91 (210)
Q Consensus 70 ~~-------~~~~~~~~~~~~i~v~d~~~ 91 (210)
.+ .....++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 22234578999999999863
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.03 E-value=3.1e-10 Score=91.33 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=73.7
Q ss_pred CCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHH
Q 028362 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA 143 (210)
Q Consensus 64 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~ 143 (210)
..+++|++++..+.+.++++++|+|++++. ..|...+.....+.|+++|+||+|+.+.. ...+
T Consensus 54 ~~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~ 116 (368)
T 3h2y_A 54 LTDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHD 116 (368)
T ss_dssp --CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHH
T ss_pred CCHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHH
Confidence 356789999999999999999999999864 34544555544589999999999997543 2233
Q ss_pred HH----HHHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 144 QG----EELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 144 ~~----~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
.. ..+++..+. .+++.+||+++.|++++++++.+..
T Consensus 117 ~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 117 KVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 33 333555665 2688999999999999999997654
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.91 E-value=9.6e-10 Score=88.55 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=71.7
Q ss_pred EeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCcc
Q 028362 61 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 140 (210)
Q Consensus 61 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~ 140 (210)
+....+++|++....+++.++++++|+|++++.+ .|...+.....+.|+++|+||+|+.+.. .
T Consensus 53 ~v~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-----------~ 115 (369)
T 3ec1_A 53 DVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-----------V 115 (369)
T ss_dssp ------CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-----------C
T ss_pred CCcCCHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-----------c
Confidence 3334588999999988899999999999998763 2222333333578999999999997643 2
Q ss_pred CHHHH----HHHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHH
Q 028362 141 TTAQG----EELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVV 179 (210)
Q Consensus 141 ~~~~~----~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~ 179 (210)
..+.. ..++...+. ..++.+||+++.|++++++.+.+..
T Consensus 116 ~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 116 KYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp CHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 23333 333555565 3678999999999999999987655
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.77 E-value=4.1e-09 Score=87.76 Aligned_cols=152 Identities=15% Similarity=0.057 Sum_probs=84.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc------CCC---C-CCCCCcee-----------eeeeEEEE--------------
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS------NKF---P-TDYIPTVF-----------DNFSANVV-------------- 50 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~------~~~---~-~~~~~~~~-----------~~~~~~~~-------------- 50 (210)
.+...|+++|.+||||||++++|.. .+. . +.+.|... ..+.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999982 211 0 01111100 00000000
Q ss_pred ECCEEEEEEEEeCCCccccc-ccCccc-----ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcE-EEEeeCcc
Q 028362 51 AEGTTVNLGLWDTAGQEDYN-RLRPLS-----YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLD 123 (210)
Q Consensus 51 ~~~~~~~~~i~D~~G~~~~~-~~~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 123 (210)
.....+.+.++||||..... .++... +..+|.+++|+|.......... ...+.. .+|+ ++|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH---HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh---hcCceEEEEeCCc
Confidence 00033678899999975422 111110 2268999999999875432222 223322 2575 78899999
Q ss_pred cccccccccCCCCCCccCHHHHHHHHHHcCCc-----------------EEEEeccCCCCC-HHHHHHHHHHH
Q 028362 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGAS-----------------YYIECSSKTQQN-VKAVFDAAIKV 178 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~Sa~~~~~-i~~~~~~i~~~ 178 (210)
...... . +.......+.+ +.+.+|+..|.| ++++++++.+.
T Consensus 252 ~~~~~g----------~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG----------G----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT----------H----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH----------H----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 864321 1 11222233321 123378999998 99999888765
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.71 E-value=3e-07 Score=74.91 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=59.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCceeeeeeEEEEE--CCEEEEEEEEeCCCccccc-----------
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY----IPTVFDNFSANVVA--EGTTVNLGLWDTAGQEDYN----------- 70 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~----------- 70 (210)
.++++|+|++|+|||||++.+.+..+.... .+..... ...+.. .+-...++++|++|-....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 367999999999999999999976543211 1111111 111222 2223468899999853210
Q ss_pred --------------ccCc--ccccCc--cE-EEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 71 --------------RLRP--LSYRGA--DV-FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 71 --------------~~~~--~~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
.... ....++ |+ ++++.|...+-+..+ ..++..+. .+.|+|+|.||+|....
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--ieilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--LVTMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--HHHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--HHHHHHHh---hCCCEEEEEcchhccch
Confidence 0000 012233 33 445555543322222 23334443 57899999999998644
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.69 E-value=1.6e-07 Score=72.38 Aligned_cols=116 Identities=18% Similarity=0.206 Sum_probs=60.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC--------CCCceeeeeeEEEEEC--CEEEEEEEEeCCCcccccc---c--
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD--------YIPTVFDNFSANVVAE--GTTVNLGLWDTAGQEDYNR---L-- 72 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~---~-- 72 (210)
.++++|+|++|+|||||++.+.+-..... ..+.....-...+... +-...++++|++|-..... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999986322110 0111000001111111 1223678999997422100 0
Q ss_pred -----------------------CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362 73 -----------------------RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (210)
Q Consensus 73 -----------------------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 127 (210)
....+..+.+++++.|.... .+......++..+.. ..++++|.+|.|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK---VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh---cCcEEEEEeccccCCH
Confidence 01112235788888885421 111111233444443 3899999999998543
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.61 E-value=2.6e-08 Score=77.24 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=67.7
Q ss_pred EEeCCCcc-cccccCcccccCccEEEEEEECCChhHHHH-HHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCC
Q 028362 60 LWDTAGQE-DYNRLRPLSYRGADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 137 (210)
Q Consensus 60 i~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 137 (210)
+-..||+. .........+..+|+++.|+|+.++.+..+ ....|+ .++|.++|+||+|+.+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~--------- 66 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAA--------- 66 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHH---------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHH---------
Confidence 34578875 344445557889999999999999877642 123332 578999999999996532
Q ss_pred CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362 138 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180 (210)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 180 (210)
..+...++.+..+. +++.+||+++.|++++++.+.+.+.
T Consensus 67 ---~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 67 ---VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp ---HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence 12233344444455 7889999999999999998877664
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.61 E-value=5.4e-09 Score=84.18 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=75.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC------CCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccccc----Cccc--
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN------KFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL----RPLS-- 76 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~~~~-- 76 (210)
.+++++|.+|+|||||+|++.+. .......|.+... ........ .+.++||||-.....+ ....
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~-~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD-MIEIPLES---GATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE-EEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe-eEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 57999999999999999999975 2211112211111 11122222 2678999996433211 1111
Q ss_pred -c---cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362 77 -Y---RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (210)
Q Consensus 77 -~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (210)
+ ...+.++++++....-.+..+ . .+..+. ..+.|+++++||.|...... .......+.+..
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~l~~l~--~~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~~~ 303 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGL-A-RLDYIK--GGRRSFVCYMANELTVHRTK-----------LEKADSLYANQL 303 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEE--SSSEEEEEEECTTSCEEEEE-----------GGGHHHHHHHHB
T ss_pred HHhcccccCceEEEEcCCceEEECCE-E-EEEEcc--CCCceEEEEecCCccccccc-----------HHHHHHHHHHhc
Confidence 1 567888898887322111111 0 011111 14689999999999876542 233344455555
Q ss_pred CCcEEEEeccCCCCC
Q 028362 153 GASYYIECSSKTQQN 167 (210)
Q Consensus 153 ~~~~~~~~Sa~~~~~ 167 (210)
+. ...+.++.+..+
T Consensus 304 g~-~l~p~~~~~~~~ 317 (369)
T 3ec1_A 304 GE-LLSPPSKRYAAE 317 (369)
T ss_dssp TT-TBCSSCGGGTTT
T ss_pred CC-ccCCCCchhhhh
Confidence 54 444455544333
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.60 E-value=6e-07 Score=73.06 Aligned_cols=166 Identities=11% Similarity=0.062 Sum_probs=83.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-eeeee-EEEEE-CCEEEEEEEEeCCCcccccccCcc-----cccC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFS-ANVVA-EGTTVNLGLWDTAGQEDYNRLRPL-----SYRG 79 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~-~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~-----~~~~ 79 (210)
...++|+|++|+|||||+|.+.+-.......-+. +.... ..+.. ....-.+++||++|-......... -+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 3579999999999999999999743211100000 00000 01111 111114788999985321111111 1223
Q ss_pred ccEEEEEEECC--ChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC-CCCCCccCHHHHHHHHH----Hc
Q 028362 80 ADVFVLAFSLV--SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD-HPGLVPVTTAQGEELRK----QI 152 (210)
Q Consensus 80 ~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~ 152 (210)
.+..++ +|.. .+... .+...+.. .+.|+++|.||.|+.--+++... .+.......+.+.++.. +.
T Consensus 149 ~~~~~~-lS~G~~~kqrv-----~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDI-----DIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp CSEEEE-EESSCCCHHHH-----HHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeEE-eCCCCccHHHH-----HHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444 6765 22222 22223332 35899999999997522111110 00000012233333331 22
Q ss_pred C--CcEEEEecc--CCCCCHHHHHHHHHHHHhC
Q 028362 153 G--ASYYIECSS--KTQQNVKAVFDAAIKVVIK 181 (210)
Q Consensus 153 ~--~~~~~~~Sa--~~~~~i~~~~~~i~~~~~~ 181 (210)
+ ....+.+|+ .++.|++++.+.+.+.+..
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 2 235678999 6677899999999877644
No 221
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.51 E-value=5.9e-09 Score=83.91 Aligned_cols=113 Identities=10% Similarity=0.040 Sum_probs=61.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCC----ceeeeee-EEEEECCEEEEEEEEeCCCcccccccCc----cc--
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIP----TVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRP----LS-- 76 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~-~~~~----~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~----~~-- 76 (210)
.+++++|.+|+|||||+|++.+..... .... ..+.+.. ....+.+. +.++||||......+.. ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999999752111 0011 1111111 11222222 67899999644322111 11
Q ss_pred ----ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362 77 ----YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (210)
Q Consensus 77 ----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 128 (210)
....+.++++++....-.+..+ ..+..+. ..+.|+++++||.|.....
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~--~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVS--GGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEE--SSSEEEEEEECTTSCEEEE
T ss_pred HhccccccCceEEEEcCCCEEEEcce--EEEEEec--CCCceEEEEecCccccccc
Confidence 2456778888876322111111 0011111 1468999999999987654
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.39 E-value=3.2e-07 Score=71.09 Aligned_cols=58 Identities=24% Similarity=0.282 Sum_probs=34.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE 67 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 67 (210)
...++++++|.+|||||||+|++.+... .....|.+.... ..+.... .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~-~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ-QWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee-EEEEeCC---CEEEEECcCcC
Confidence 3568999999999999999999997653 222222111111 1122222 46789999974
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.35 E-value=2.1e-07 Score=71.36 Aligned_cols=56 Identities=14% Similarity=0.043 Sum_probs=34.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED 68 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~ 68 (210)
++++++|.+|||||||+|+|.+...... .++.+.+... .+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 6999999999999999999997654221 1222222111 11122 2568899999754
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.28 E-value=1.1e-06 Score=71.86 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=75.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC----CCC------CCCCCce-------eeeeeEEEEEC-----------------
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN----KFP------TDYIPTV-------FDNFSANVVAE----------------- 52 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~----~~~------~~~~~~~-------~~~~~~~~~~~----------------- 52 (210)
+...|+++|.+||||||++..|... ... +.+.|.. .......+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999988731 100 1111110 00000011100
Q ss_pred -CEEEEEEEEeCCCcccccc-cCc-----ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362 53 -GTTVNLGLWDTAGQEDYNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (210)
Q Consensus 53 -~~~~~~~i~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 125 (210)
...+.+.++||+|...... ... .....++.+++|+|.......... ...+... -.+..+|+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence 0226788999999543211 000 112357899999999765543332 2233321 23556889999996
Q ss_pred cccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHH
Q 028362 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 169 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 169 (210)
... ..+.......+. |+..++. |++++
T Consensus 253 ~~g--------------G~~ls~~~~~g~-PI~fig~--Ge~vd 279 (443)
T 3dm5_A 253 AKG--------------GGALSAVAATGA-PIKFIGT--GEKID 279 (443)
T ss_dssp SSH--------------HHHHHHHHTTCC-CEEEEEC--SSSTT
T ss_pred ccc--------------cHHHHHHHHHCC-CEEEEEc--CCChH
Confidence 542 233444555665 5555543 55443
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.22 E-value=4.8e-07 Score=69.37 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=60.4
Q ss_pred CCCcccc-cccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccC
Q 028362 63 TAGQEDY-NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT 141 (210)
Q Consensus 63 ~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~ 141 (210)
.|||... .......+.++|+++.|+|+.++.+..+. .+. .. ++|.++|+||+|+.+.. .
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~------~l~-ll-~k~~iivlNK~DL~~~~------------~ 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY------GVD-FS-RKETIILLNKVDIADEK------------T 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT------TSC-CT-TSEEEEEEECGGGSCHH------------H
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh------HHH-hc-CCCcEEEEECccCCCHH------------H
Confidence 4666432 23444568899999999999988765432 111 11 78999999999996532 1
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 028362 142 TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177 (210)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 177 (210)
.+...++.+..+. ++ .+||+++.|++++++.+..
T Consensus 64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHH
Confidence 2233444445565 56 8999999999999877654
No 226
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.14 E-value=2e-06 Score=67.23 Aligned_cols=90 Identities=24% Similarity=0.249 Sum_probs=60.9
Q ss_pred cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCcc--CHHHHHHHH
Q 028362 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV--TTAQGEELR 149 (210)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~ 149 (210)
+....+.++|.+++|+|+.+|..-.+....++...+. .++|.+||+||+|+.+... . ..+......
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~----------~~~~~~~~~~~y 146 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQD----------TEDTIQAYAEDY 146 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHH----------HHHHHHHHHHHH
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhh----------hHHHHHHHHHHH
Confidence 4445688999999999998776443344666655443 4789999999999975420 0 022333444
Q ss_pred HHcCCcEEEEeccCCCCCHHHHHHH
Q 028362 150 KQIGASYYIECSSKTQQNVKAVFDA 174 (210)
Q Consensus 150 ~~~~~~~~~~~Sa~~~~~i~~~~~~ 174 (210)
+..+. +.+.+||.++.|+++++..
T Consensus 147 ~~~g~-~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 147 RNIGY-DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp HHHTC-CEEECCHHHHTTCTTTGGG
T ss_pred HhCCC-eEEEEecCCCCCHHHHHhh
Confidence 44565 6788999999888876643
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.14 E-value=1.9e-06 Score=73.10 Aligned_cols=64 Identities=22% Similarity=0.111 Sum_probs=38.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-eeeeeE---EEEE-CCEEEEEEEEeCCCcccc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSA---NVVA-EGTTVNLGLWDTAGQEDY 69 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~---~~~~-~~~~~~~~i~D~~G~~~~ 69 (210)
.+.++|+|+|.+|||||||+|+|.+....-...++. ..+... .... ......+.++||||....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 467899999999999999999999865211111111 111111 0111 122345778999997543
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.00 E-value=4.3e-06 Score=68.50 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=39.4
Q ss_pred EEEEEEEeCCCcccccc-cC-----cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCC-c-EEEEeeCccccc
Q 028362 55 TVNLGLWDTAGQEDYNR-LR-----PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV-P-VVLVGTKLDLRE 126 (210)
Q Consensus 55 ~~~~~i~D~~G~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-iilv~nK~D~~~ 126 (210)
.+.+.++||||...... +. ...+..+|.+++|+|........ .....+. ... | ..+|+||.|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~---~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAG----IQAKAFK---EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHH----HHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHH----HHHHHHh---hcccCCeEEEEeCCCCcc
Confidence 46788999999654211 00 01123689999999986654221 2222332 235 6 789999999853
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.93 E-value=1.1e-05 Score=65.86 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=52.2
Q ss_pred EEEEEEEeCCCccc--ccc-cCc-----ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362 55 TVNLGLWDTAGQED--YNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (210)
Q Consensus 55 ~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 126 (210)
.+.+.++|+||... ... +.. ......+.+++|+|........+.. ..+... -.+..+|+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a----~~f~~~--~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA----SRFHQA--SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH----HHHHHH--CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH----HHHhcc--cCCcEEEEecccccc
Confidence 46678899999643 110 000 0112468999999997665443332 233321 135678999999864
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH
Q 028362 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 168 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (210)
. ...+.......+. |+..++. |+++
T Consensus 253 ~--------------~G~als~~~~~g~-Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 K--------------GGGALSAVVATGA-TIKFIGT--GEKI 277 (433)
T ss_dssp C--------------HHHHHHHHHHHTC-EEEEEEC--CSSS
T ss_pred c--------------chHHHHHHHHHCC-CEEEEEC--CCCh
Confidence 3 2234455555665 7666654 5554
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.84 E-value=1.3e-05 Score=68.53 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~ 32 (210)
..++|+|++|+|||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999998754
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.81 E-value=1.7e-05 Score=61.75 Aligned_cols=92 Identities=14% Similarity=0.080 Sum_probs=53.8
Q ss_pred EEEEEEEeCCCccc--ccc-cCc-----ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccc
Q 028362 55 TVNLGLWDTAGQED--YNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLR 125 (210)
Q Consensus 55 ~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~ 125 (210)
.+.+.++||||... ... +.. .....+|.+++|+|........ .....+.. ..| ..+|.||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~~---~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY----DLASKFNQ---ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH----HHHHHHHH---TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH----HHHHHHHh---hCCCCEEEEeCCCCC
Confidence 46788999999865 211 110 1234689999999986543221 11223322 356 67889999985
Q ss_pred cccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHH
Q 028362 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 170 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 170 (210)
.. ...+.......+. |+..++ .|+++++
T Consensus 253 ~~--------------~g~~~~~~~~~~~-pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 AK--------------GGGALSAVAATGA-TIKFIG--TGEKIDE 280 (297)
T ss_dssp TT--------------HHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred cc--------------hHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence 32 2234556666775 555554 4666654
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.71 E-value=0.00011 Score=58.55 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=55.3
Q ss_pred cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCcc-CHHHHHHHHHHcCC
Q 028362 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV-TTAQGEELRKQIGA 154 (210)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 154 (210)
...++|.+++|.+. +|..-.+....++-..+. .++|.+||+||+|+.+... . ..+.........+.
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~----------~~~~~~~~~~y~~~G~ 193 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEG----------MDFVNEQMDIYRNIGY 193 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCchh----------HHHHHHHHHHHHhCCC
Confidence 46889999988665 455333334555544443 3688899999999965421 0 01122223334565
Q ss_pred cEEEEeccCCCCCHHHHHHHH
Q 028362 155 SYYIECSSKTQQNVKAVFDAA 175 (210)
Q Consensus 155 ~~~~~~Sa~~~~~i~~~~~~i 175 (210)
+.+.+||.++.|++++...+
T Consensus 194 -~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 194 -RVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp -CEEECBTTTTBTHHHHHHHH
T ss_pred -cEEEEecCCCcCHHHHHHhc
Confidence 67889999999999887543
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.49 E-value=1.7e-06 Score=71.85 Aligned_cols=101 Identities=16% Similarity=-0.048 Sum_probs=58.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCccc--ccccC--------c
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQED--YNRLR--------P 74 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~ 74 (210)
.....|+++|.+|+||||+.++|..... ....++...... ......+......+||..|++. .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999885422 111222211100 0000011113345789988733 33333 4
Q ss_pred ccccCccEEEEEEECCChhHHHHHHHHHHHHHhcc
Q 028362 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY 109 (210)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 109 (210)
.++....+.++|+|.++.. .... ..|.+.+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~~-~~~R-~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT-RERR-AMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS-HHHH-HHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCCC-HHHH-HHHHHHHHhc
Confidence 4565677889999999874 3332 5666665543
No 234
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.44 E-value=0.00011 Score=52.32 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=23.5
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
|.+....--.++|+|++|+||||+++.+..
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 666555556799999999999999998864
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.35 E-value=0.00018 Score=59.07 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=22.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
.+..-|.|+|.+++|||||+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 4566788999999999999999985
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.34 E-value=0.00012 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
+++|+|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 237
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.32 E-value=0.00015 Score=52.16 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=24.2
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
+++...+...|+|+|.+|+||||+.+.|...
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3556666678999999999999999988754
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=0.00012 Score=52.55 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|||||||++.+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998853
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.25 E-value=0.00015 Score=52.86 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.++|+|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 240
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.23 E-value=0.00021 Score=52.38 Aligned_cols=30 Identities=17% Similarity=0.017 Sum_probs=24.3
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
|.+..++...|+|.|.+|+||||+++.|..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 444444567899999999999999998874
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.16 E-value=0.00026 Score=51.01 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.++|+|++|+|||||++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999864
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.15 E-value=0.00022 Score=51.41 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 028362 11 CVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~ 30 (210)
++|+|++|+|||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999885
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.15 E-value=0.00023 Score=51.81 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999988864
No 244
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.13 E-value=0.00027 Score=51.15 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
|+|+|++|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999853
No 245
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.12 E-value=0.00025 Score=51.98 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
.+...|+|+|++|+|||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998875
No 246
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.11 E-value=0.00016 Score=56.45 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
.++|+|++|||||||+|.+.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999998643
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.10 E-value=0.00027 Score=52.49 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
--++|+|++|||||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36789999999999999998864
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.10 E-value=0.00025 Score=50.46 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 028362 10 KCVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~ 29 (210)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 249
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.08 E-value=0.00034 Score=50.78 Aligned_cols=31 Identities=23% Similarity=0.132 Sum_probs=23.4
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
|.+-..+...|+|.|.+||||||+.+.|...
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 5555566788999999999999999998864
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.07 E-value=0.00033 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
--|+|+|++|+|||||++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45889999999999999999865
No 251
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.05 E-value=0.00042 Score=50.57 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
--|+|+|++|+|||||+++|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 46889999999999999999853
No 252
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.05 E-value=0.00031 Score=51.50 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999988754
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.05 E-value=0.00032 Score=52.02 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|+|||||++.+.+-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999988863
No 254
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.04 E-value=0.0011 Score=51.70 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 028362 10 KCVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~ 29 (210)
.++++|++|||||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 255
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.03 E-value=0.0004 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=21.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~ 32 (210)
.-.++|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999988653
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.01 E-value=0.00041 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
..-|+|+|++|||||||+++|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999754
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.99 E-value=0.00042 Score=48.88 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998743
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.98 E-value=0.00043 Score=48.79 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHH
Q 028362 10 KCVTVGDGAVGKTCMLICY 28 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l 28 (210)
-|+|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 259
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.96 E-value=0.00057 Score=49.05 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
...|+|.|.+|+||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.96 E-value=0.00046 Score=48.84 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
..|+|+|++|+||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988753
No 261
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.96 E-value=0.00049 Score=50.13 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
.--|+|+|++|+||||+++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 262
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.95 E-value=0.00048 Score=48.94 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
+|+|+|++|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998874
No 263
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.95 E-value=0.00053 Score=51.22 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=20.7
Q ss_pred CCCCCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362 1 MASSASRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 1 m~~~~~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
|+++.-..+++.|+|++||||||+..+|..
T Consensus 1 ~~~~~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 1 MAHHHHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --------CEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcccccccceeeECCCCCCHHHHHHHHHH
Confidence 677777889999999999999999998874
No 264
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.94 E-value=0.00053 Score=50.68 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
++...|+|.|.+||||||+.+.|..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998874
No 265
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.93 E-value=0.00052 Score=48.74 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
.-|+|.|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 266
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.92 E-value=0.00059 Score=49.65 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
.-.|+|+|++|+||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999998874
No 267
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.92 E-value=0.00055 Score=50.35 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 268
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.90 E-value=0.00058 Score=50.25 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 269
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.90 E-value=0.00057 Score=50.10 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=21.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.+-..|+|+|++|+|||||++.+.+-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999988753
No 270
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.90 E-value=0.00055 Score=49.24 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-++|+|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999974
No 271
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.90 E-value=0.0006 Score=51.36 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHH
Q 028362 8 FIKCVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~ 29 (210)
.-.|+|+|++|+||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999988
No 272
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.88 E-value=0.00077 Score=50.78 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=22.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
.+..+|+|.|++||||||++++|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999874
No 273
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.87 E-value=0.00059 Score=47.97 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
-++|+|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999888654
No 274
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.87 E-value=0.00055 Score=51.40 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3689999999999999877753
No 275
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.86 E-value=0.00065 Score=54.15 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
.++|+|++|||||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999754
No 276
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.84 E-value=0.00063 Score=49.80 Aligned_cols=25 Identities=20% Similarity=0.022 Sum_probs=21.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
++...|+|.|.+||||||+++.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998874
No 277
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.83 E-value=0.00072 Score=49.70 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
..|+|+|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.83 E-value=0.00068 Score=49.34 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
..|+|+|.+|+||||+++.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988743
No 279
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.83 E-value=0.00071 Score=48.05 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-|+|.|.+|+||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998853
No 280
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.81 E-value=0.00084 Score=49.67 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
..|+|+|++|+||||+++.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 281
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.81 E-value=0.00093 Score=48.57 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=21.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
.....|+|.|.+|+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
No 282
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.80 E-value=0.001 Score=47.59 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
...|+|.|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 283
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.79 E-value=0.0007 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+...|+|.|.+||||||+++.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998874
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.78 E-value=0.0007 Score=48.60 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.|+|.|.+||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 285
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.78 E-value=0.00087 Score=48.57 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998875
No 286
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.78 E-value=0.00064 Score=50.61 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999877653
No 287
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.77 E-value=0.00081 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999888754
No 288
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.77 E-value=0.001 Score=47.84 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 289
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.76 E-value=0.00076 Score=48.86 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.++|+|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999998775
No 290
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.76 E-value=0.0012 Score=47.92 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=21.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
.+...|+|.|.+|+||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998874
No 291
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.0011 Score=48.33 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 292
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.74 E-value=0.00091 Score=47.94 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
..|+|.|.+||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 293
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.73 E-value=0.001 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+...|+|.|.+|+||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345789999999999999998874
No 294
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.73 E-value=0.0007 Score=48.34 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.++|+|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988754
No 295
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.73 E-value=0.00085 Score=49.61 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999887754
No 296
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.72 E-value=0.001 Score=47.78 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
..-|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 297
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.72 E-value=0.00085 Score=51.21 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999877754
No 298
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.72 E-value=0.00084 Score=51.60 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999877754
No 299
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.71 E-value=0.0012 Score=48.22 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
+.|+|+|++|+||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999975
No 300
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.71 E-value=0.0011 Score=47.48 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
..|+++|++|+||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 301
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.70 E-value=0.00087 Score=50.35 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999887754
No 302
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.70 E-value=0.00087 Score=49.29 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
+|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998874
No 303
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.70 E-value=0.00092 Score=48.66 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
.+|+|+|++|+||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 304
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.69 E-value=0.0013 Score=47.81 Aligned_cols=24 Identities=21% Similarity=0.019 Sum_probs=21.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
...|+|.|.+|+||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998865
No 305
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.69 E-value=0.00093 Score=51.12 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3589999999999999888754
No 306
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.68 E-value=0.00091 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999887754
No 307
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.66 E-value=0.0012 Score=47.23 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-++|.|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999999864
No 308
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.66 E-value=0.001 Score=48.43 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
+.--|+|+|++|+||||+++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999887743
No 309
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.66 E-value=0.00099 Score=50.80 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.++|+|++|+|||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999998875
No 310
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.65 E-value=0.001 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4689999999999999887754
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.65 E-value=0.00064 Score=50.64 Aligned_cols=20 Identities=20% Similarity=0.059 Sum_probs=14.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 028362 10 KCVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~ 29 (210)
-++|+|++|+|||||++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 312
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.65 E-value=0.0011 Score=49.67 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 028362 10 KCVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~ 29 (210)
-++|+|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 36899999999999999887
No 313
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.65 E-value=0.001 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999887754
No 314
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.64 E-value=0.0011 Score=49.90 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999887754
No 315
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.64 E-value=0.0011 Score=50.08 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999887654
No 316
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.64 E-value=0.001 Score=50.04 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999887754
No 317
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.63 E-value=0.0011 Score=50.14 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999988864
No 318
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.63 E-value=0.0011 Score=50.50 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999887754
No 319
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.62 E-value=0.0011 Score=50.21 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4689999999999999887754
No 320
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.61 E-value=0.0012 Score=51.54 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|+|||||++.+.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999987743
No 321
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.60 E-value=0.0012 Score=50.43 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999888864
No 322
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.60 E-value=0.00084 Score=49.41 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 323
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.59 E-value=0.001 Score=51.76 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
.++++|++|+|||||+|.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998643
No 324
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.59 E-value=0.001 Score=49.22 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+...|+|.|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998874
No 325
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.59 E-value=0.0014 Score=48.56 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.58 E-value=0.0013 Score=47.43 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+...|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998874
No 327
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.58 E-value=0.0015 Score=45.80 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 328
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.58 E-value=0.0013 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4689999999999999887754
No 329
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.57 E-value=0.0012 Score=50.65 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999877754
No 330
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.56 E-value=0.0013 Score=48.56 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+...|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998874
No 331
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.55 E-value=0.0014 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4689999999999999877754
No 332
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.55 E-value=0.0016 Score=50.27 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
.+..-|+|.|++||||||++++|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999974
No 333
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.55 E-value=0.0013 Score=49.97 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999887754
No 334
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.54 E-value=0.0019 Score=47.83 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=18.4
Q ss_pred eE-EEEECCCCCCHHHHHHHHHc
Q 028362 9 IK-CVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~k-v~llG~~~~GKStli~~l~~ 30 (210)
.| |+|+|+|||||+|.+.+|..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44 46789999999999998874
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.53 E-value=0.0017 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.082 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+..-|.|+|+.|+|||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998875
No 336
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.51 E-value=0.0014 Score=50.13 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4689999999999999887654
No 337
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.49 E-value=0.0016 Score=46.89 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-|+|.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 338
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.49 E-value=0.0021 Score=46.88 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=21.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
+...|+|+|++|+||||+++.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999988864
No 339
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.48 E-value=0.0019 Score=45.86 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
...+.|.|.+|+|||||+.++...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346889999999999999998853
No 340
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.48 E-value=0.0021 Score=50.27 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=21.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
.+..-|+|+|++|+|||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4456789999999999999998875
No 341
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.48 E-value=0.0013 Score=48.58 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+|||||++.+...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 342
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.47 E-value=0.0019 Score=48.73 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=21.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
..+.+.|+|.|.+|+||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998875
No 343
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.45 E-value=0.0018 Score=49.47 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999887754
No 344
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.45 E-value=0.002 Score=48.04 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+...|+|.|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998874
No 345
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.45 E-value=0.002 Score=46.25 Aligned_cols=21 Identities=19% Similarity=-0.026 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 346
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.44 E-value=0.0024 Score=49.40 Aligned_cols=26 Identities=15% Similarity=0.018 Sum_probs=22.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
..+...|+|.|++|+|||||++.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999987763
No 347
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.43 E-value=0.0023 Score=50.27 Aligned_cols=25 Identities=20% Similarity=0.044 Sum_probs=21.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
...+-|.|.|++|||||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567799999999999999988764
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.43 E-value=0.0014 Score=47.33 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
...|+|.|.+|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998875
No 349
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.43 E-value=0.0013 Score=52.49 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-+++|+|++|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999988764
No 350
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.42 E-value=0.0024 Score=47.01 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
.+.|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 351
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.42 E-value=0.0014 Score=46.71 Aligned_cols=23 Identities=22% Similarity=-0.041 Sum_probs=16.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 352
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.41 E-value=0.0012 Score=45.79 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|+|||||++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988864
No 353
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.40 E-value=0.0021 Score=45.67 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.++|.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988754
No 354
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.40 E-value=0.0029 Score=45.27 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+...|+|.|.+|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346789999999999999998874
No 355
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.39 E-value=0.0018 Score=49.64 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
++|+|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999988763
No 356
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.38 E-value=0.0022 Score=45.19 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 357
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.38 E-value=0.0026 Score=46.27 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=21.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
.+..-|+|+|++|+||||+++.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998874
No 358
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.37 E-value=0.00079 Score=47.97 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|+|||||++.+..-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999988753
No 359
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.35 E-value=0.0026 Score=48.36 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
..-|+|.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 360
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.35 E-value=0.002 Score=48.55 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
++|+|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988864
No 361
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.34 E-value=0.0022 Score=48.59 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-|+|+|++|+|||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998874
No 362
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.34 E-value=0.0018 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCC
Q 028362 11 CVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~ 32 (210)
++|+|++|+|||||++.+.+-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 6899999999999998877643
No 363
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.34 E-value=0.0018 Score=49.05 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
.+...|+++|++|+||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998874
No 364
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.33 E-value=0.0022 Score=51.12 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3689999999999999888754
No 365
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.32 E-value=0.0024 Score=45.62 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998874
No 366
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.31 E-value=0.0028 Score=47.89 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 028362 9 IKCVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~ 29 (210)
..|+|+|++|+||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999887
No 367
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.30 E-value=0.0021 Score=50.07 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=19.1
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 028362 9 IKCVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~ 29 (210)
--++|+|++||||||+++.+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 468899999999999999887
No 368
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.30 E-value=0.0023 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 3689999999999999888754
No 369
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.30 E-value=0.0023 Score=51.38 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
++|+|++|+|||||++.+.+-
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHHcC
Confidence 689999999999999888754
No 370
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.29 E-value=0.0014 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5789999999999999777643
No 371
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.29 E-value=0.0031 Score=48.57 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=21.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
.+.+.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998873
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.29 E-value=0.00078 Score=49.33 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-|+|.|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998874
No 373
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.29 E-value=0.0024 Score=51.01 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
++|+|++|+|||||++.+.+-
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHhcC
Confidence 579999999999999877754
No 374
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.27 E-value=0.0024 Score=50.97 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3689999999999999888754
No 375
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.27 E-value=0.0036 Score=45.39 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=22.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-..+.|.|.|.+||||||+.+.|...
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHh
Confidence 346789999999999999999988754
No 376
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.25 E-value=0.0023 Score=50.98 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|+|||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999988753
No 377
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.25 E-value=0.0025 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.148 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
--++++|+.|+||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998874
No 378
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.25 E-value=0.0022 Score=49.60 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999887754
No 379
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.24 E-value=0.0026 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.230 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 3589999999999999887754
No 380
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.23 E-value=0.0026 Score=51.02 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
++|+|++|+|||||++.+.+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCcHHHHHHHHHHcC
Confidence 689999999999999887754
No 381
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.21 E-value=0.0029 Score=47.32 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+.+.|+|.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998873
No 382
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.21 E-value=0.0026 Score=50.14 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+.--++++|++|+||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999998874
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.20 E-value=0.0029 Score=45.01 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
-..|+|.|.+|+||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998875
No 384
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.20 E-value=0.0042 Score=46.27 Aligned_cols=25 Identities=16% Similarity=-0.020 Sum_probs=21.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
+-.-|+|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467999999999999999988854
No 385
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.19 E-value=0.0019 Score=48.04 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
+-.-|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999988764
No 386
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.19 E-value=0.0036 Score=43.98 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 387
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.17 E-value=0.0027 Score=50.05 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999988754
No 388
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.14 E-value=0.0032 Score=46.42 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+|||||+..+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999988843
No 389
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.13 E-value=0.0027 Score=50.76 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|+|||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998864
No 390
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.13 E-value=0.003 Score=48.34 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
++|+|++|+|||||++.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999988864
No 391
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.12 E-value=0.0029 Score=50.79 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|+||||+++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999988853
No 392
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.12 E-value=0.0035 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+..-|+|+|++|+|||||++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998875
No 393
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.08 E-value=0.0033 Score=44.78 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999998864
No 394
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.08 E-value=0.0035 Score=47.34 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.++|.|++|+|||||++.+...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999988753
No 395
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.07 E-value=0.0027 Score=44.94 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.++|.|++|+|||++++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999999988753
No 396
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.06 E-value=0.0037 Score=45.75 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
..-|+|.|.+|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998764
No 397
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.05 E-value=0.0027 Score=50.09 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988864
No 398
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.04 E-value=0.0022 Score=50.95 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 3689999999999999887754
No 399
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.03 E-value=0.0039 Score=46.12 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988753
No 400
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.02 E-value=0.0038 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.++|.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988754
No 401
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.00 E-value=0.0036 Score=47.37 Aligned_cols=22 Identities=23% Similarity=0.054 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
-.|+|+|++|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 402
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.99 E-value=0.0034 Score=50.63 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.++|+|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 468999999999999988775
No 403
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.97 E-value=0.004 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.086 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
.--++++|+.|+||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34688999999999999998874
No 404
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.97 E-value=0.0038 Score=50.82 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998864
No 405
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.92 E-value=0.0045 Score=47.81 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
.-|+|.|.+|+||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999885
No 406
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.90 E-value=0.022 Score=45.47 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 028362 11 CVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~ 29 (210)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999877
No 407
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.89 E-value=0.0049 Score=45.06 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-++|+|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 408
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.89 E-value=0.0051 Score=42.23 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=21.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~~ 32 (210)
...|+|.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999887653
No 409
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.87 E-value=0.0022 Score=51.11 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3689999999999999887754
No 410
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.85 E-value=0.0053 Score=45.65 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 411
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.0037 Score=51.56 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999988753
No 412
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.82 E-value=0.0061 Score=42.21 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 028362 11 CVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~ 29 (210)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999876
No 413
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.82 E-value=0.0043 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
.++|+|++|+||||+++.+.+-.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999988643
No 414
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.81 E-value=0.0067 Score=47.94 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-|+|.|++|||||||..+|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999988853
No 415
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.80 E-value=0.0048 Score=48.99 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
++.|+|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999888764
No 416
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.79 E-value=0.0044 Score=47.85 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|++|+|||||+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3789999999999999988754
No 417
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.78 E-value=0.0059 Score=44.92 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-++|.|++|+||||+++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998874
No 418
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.77 E-value=0.0059 Score=44.34 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
++|.|++|+|||++++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988753
No 419
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.72 E-value=0.0057 Score=47.10 Aligned_cols=24 Identities=17% Similarity=0.121 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-.++|.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999999988764
No 420
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.72 E-value=0.0056 Score=46.80 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-.++|.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998754
No 421
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.69 E-value=0.0075 Score=44.94 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
.+...|+|+|.+|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999998874
No 422
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.68 E-value=0.0036 Score=48.45 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=17.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+.+-|+|.|++|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998764
No 423
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.68 E-value=0.0064 Score=45.77 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.++|.|++|+|||++++.+...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988753
No 424
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.68 E-value=0.0043 Score=47.12 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=21.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.+...|+|.|.+|+||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 35578999999999999999887754
No 425
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.67 E-value=0.0091 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
.--++|+|.+|+|||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34688999999999999998873
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.60 E-value=0.0066 Score=48.75 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
--++|+|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3688999999999999998884
No 427
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.59 E-value=0.0066 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
--++|.|++|+|||||++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999988753
No 428
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.57 E-value=0.0078 Score=50.66 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999888864
No 429
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.57 E-value=0.0078 Score=46.54 Aligned_cols=25 Identities=12% Similarity=-0.096 Sum_probs=20.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.+.-+++.|+||+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456777799999999999988754
No 430
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.56 E-value=0.0044 Score=48.58 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.--++|+|..|+|||||++.+.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 345789999999999999999965
No 431
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.56 E-value=0.007 Score=46.95 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.++|.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999988864
No 432
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.55 E-value=0.0094 Score=46.75 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.51 E-value=0.007 Score=49.62 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
+++|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999888764
No 434
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.49 E-value=0.019 Score=44.70 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=25.2
Q ss_pred cEEEEEEECCChhH-HHHHHHHHHHHHhccCCCCcEEEEeeCccc
Q 028362 81 DVFVLAFSLVSRAS-YENVLKKWIPELQHYSPGVPVVLVGTKLDL 124 (210)
Q Consensus 81 ~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 124 (210)
..-++++|=.+.-+ -.. ...++..++....+.++|+..|..+.
T Consensus 105 ~~~vliiDEi~~l~~~~~-~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAES-QRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGHHH-HHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcHHH-HHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 45556666554433 222 25566666665567788888887663
No 435
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.48 E-value=0.0077 Score=49.90 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-++|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999998873
No 436
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.47 E-value=0.0085 Score=43.62 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~ 32 (210)
..|+|+|++|+|||||...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998654
No 437
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.46 E-value=0.012 Score=44.65 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=22.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.....++|.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44567999999999999999988764
No 438
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.45 E-value=0.0092 Score=43.21 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.|+|.|++|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 439
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.45 E-value=0.0077 Score=50.70 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|+|+.|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999888864
No 440
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.42 E-value=0.0067 Score=44.42 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.+++.|+||+||||++..+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999887764
No 441
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.41 E-value=0.011 Score=45.77 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
....++|.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999986653
No 442
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.0088 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4789999999999999988864
No 443
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.36 E-value=0.0097 Score=50.58 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999887754
No 444
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.35 E-value=0.01 Score=45.80 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-.++|.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988753
No 445
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.32 E-value=0.0085 Score=50.94 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5789999999999999877654
No 446
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.27 E-value=0.014 Score=47.54 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
...-|+|+|.+|+||||+.++|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456889999999999999998753
No 447
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.26 E-value=0.0087 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.--++|.|++|+|||||++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988753
No 448
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.25 E-value=0.01 Score=44.18 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999877764
No 449
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.25 E-value=0.0096 Score=45.55 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998874
No 450
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.25 E-value=0.017 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.++|.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36899999999999999988754
No 451
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.23 E-value=0.0092 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=18.7
Q ss_pred eEEEEECCCCCCHHHHHHHHH
Q 028362 9 IKCVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~ 29 (210)
-.++++|++|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999776
No 452
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.23 E-value=0.012 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-|++-|.+|+||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999988854
No 453
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.20 E-value=0.0088 Score=47.20 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 028362 11 CVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~ 30 (210)
++|.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 454
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.19 E-value=0.011 Score=46.30 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.++|.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999988864
No 455
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.16 E-value=0.0054 Score=42.03 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
..|+|.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45899999999999999776643
No 456
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.16 E-value=0.011 Score=46.57 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
+++.|++|+||||+++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988764
No 457
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.15 E-value=0.011 Score=46.99 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988854
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.14 E-value=0.012 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999888764
No 459
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.13 E-value=0.014 Score=46.09 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-|+|+|++|||||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998853
No 460
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.11 E-value=0.013 Score=45.63 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=19.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
--++++|++|+||||++..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 4578999999999999997773
No 461
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.11 E-value=0.017 Score=42.78 Aligned_cols=26 Identities=15% Similarity=-0.006 Sum_probs=21.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHHc
Q 028362 5 ASRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 5 ~~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
..+..-|++-|.+|+||||+++.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999998874
No 462
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.11 E-value=0.018 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.164 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
..-|+|+|++|||||||...+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 345789999999999999999743
No 463
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.10 E-value=0.014 Score=45.60 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-|+|.|++|||||||..++...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5789999999999999999754
No 464
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.10 E-value=0.012 Score=46.01 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-.++|.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999988754
No 465
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.08 E-value=0.013 Score=42.95 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHHc
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~ 30 (210)
.+.|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 466
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.07 E-value=0.015 Score=42.43 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 028362 11 CVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~ 29 (210)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4788999999999999775
No 467
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.03 E-value=0.019 Score=42.15 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=22.9
Q ss_pred CCC-CCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362 1 MAS-SASRFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 1 m~~-~~~~~~kv~llG~~~~GKStli~~l~~ 30 (210)
|++ +.-..+-|.|.|..|+||||+.+.|..
T Consensus 1 ~~~~~~~~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 1 MAHHHHHHMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp -----CCSCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcccccceeEEEEECCCCCCHHHHHHHHHH
Confidence 452 344668999999999999999998875
No 468
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.03 E-value=0.0091 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999877654
No 469
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.02 E-value=0.018 Score=42.33 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+-.-|+|.|.+|+||||+++.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 346689999999999999998864
No 470
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.02 E-value=0.013 Score=49.40 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999888764
No 471
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.01 E-value=0.0099 Score=50.70 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6799999999999999877643
No 472
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.00 E-value=0.013 Score=46.03 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 028362 11 CVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~ 31 (210)
++|.|++|+||||+++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988754
No 473
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.00 E-value=0.015 Score=45.32 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-.++|.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999888753
No 474
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.99 E-value=0.012 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.128 Sum_probs=17.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
+-.-|+|.|.+|+||||+++.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998874
No 475
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.99 E-value=0.015 Score=48.88 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988864
No 476
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.014 Score=47.60 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
--|++.|+||+|||+|++++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998854
No 477
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.97 E-value=0.0061 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
.++|.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999988753
No 478
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.95 E-value=0.016 Score=41.16 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~ 32 (210)
.-|++.|++|+||||+.-.|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 358999999999999999998754
No 479
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.94 E-value=0.016 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
.++|+|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999888643
No 480
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.94 E-value=0.015 Score=43.91 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~~ 32 (210)
.-++|.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 468999999999999999888653
No 481
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.91 E-value=0.012 Score=46.73 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~~ 31 (210)
..-.++|.|++|+|||++++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3447899999999999999988753
No 482
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.89 E-value=0.025 Score=44.90 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Q 028362 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 7 ~~~kv~llG~~~~GKStli~~l~~ 30 (210)
...+|+|+|++|+||||+.+.+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999986653
No 483
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.88 E-value=0.015 Score=45.57 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.++|.|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 484
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.015 Score=47.46 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-.|++.|+||+|||+|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999998864
No 485
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.86 E-value=0.015 Score=47.74 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
--++|.|++|+|||||++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988753
No 486
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.85 E-value=0.013 Score=46.43 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.++|.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988754
No 487
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.85 E-value=0.0088 Score=50.81 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.++++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 578999999999999976554
No 488
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.83 E-value=0.014 Score=46.26 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~~ 32 (210)
-+.|+|++|+|||||+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999988653
No 489
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.80 E-value=0.061 Score=44.12 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=38.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHHc------------------CCCCC--C-CCCceeeeeeE-EEEE---CCEEEEEEE
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYTS------------------NKFPT--D-YIPTVFDNFSA-NVVA---EGTTVNLGL 60 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~~------------------~~~~~--~-~~~~~~~~~~~-~~~~---~~~~~~~~i 60 (210)
.+..=|.|+|..++|||+|+|.+.. ..|.. . ..-|.+.-... ...+ ++....+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3556667999999999999995541 22321 1 11122332221 1111 567788999
Q ss_pred EeCCCccc
Q 028362 61 WDTAGQED 68 (210)
Q Consensus 61 ~D~~G~~~ 68 (210)
.||.|...
T Consensus 145 lDTEG~~d 152 (457)
T 4ido_A 145 MDTQGTFD 152 (457)
T ss_dssp EEECCBTC
T ss_pred EeccCCCC
Confidence 99999644
No 490
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.80 E-value=0.018 Score=45.09 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 028362 10 KCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~~ 31 (210)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 491
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.78 E-value=0.017 Score=45.94 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHcC
Q 028362 9 IKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~~ 31 (210)
-.|+|.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999988854
No 492
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.017 Score=47.27 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.--|++.|+||+|||+|++++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999998854
No 493
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.017 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCC
Q 028362 11 CVTVGDGAVGKTCMLICYTSNK 32 (210)
Q Consensus 11 v~llG~~~~GKStli~~l~~~~ 32 (210)
++|+|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999998888643
No 494
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.77 E-value=0.025 Score=42.00 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=19.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHH
Q 028362 6 SRFIKCVTVGDGAVGKTCMLICYT 29 (210)
Q Consensus 6 ~~~~kv~llG~~~~GKStli~~l~ 29 (210)
.-.++|++.|.+||||||++-.+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 345899999999999999965444
No 495
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.77 E-value=0.017 Score=46.17 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
...++|.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999988754
No 496
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.77 E-value=0.011 Score=50.26 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999976664
No 497
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.75 E-value=0.017 Score=45.89 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-.++|.|++|+|||++++.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988754
No 498
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.71 E-value=0.016 Score=48.76 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 028362 10 KCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 10 kv~llG~~~~GKStli~~l~~ 30 (210)
-++|+|++|+|||||++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 499
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.71 E-value=0.018 Score=45.81 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Q 028362 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (210)
Q Consensus 8 ~~kv~llG~~~~GKStli~~l~~~ 31 (210)
.-.++|.|++|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988754
No 500
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.71 E-value=0.016 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHc
Q 028362 9 IKCVTVGDGAVGKTCMLICYTS 30 (210)
Q Consensus 9 ~kv~llG~~~~GKStli~~l~~ 30 (210)
-.++|+|++|+|||++++.+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998774
Done!