Query 028363
Match_columns 210
No_of_seqs 191 out of 1533
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:20:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 3.2E-39 6.9E-44 261.5 4.9 163 1-171 1-190 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 5.6E-35 1.2E-39 203.0 3.5 75 2-76 1-75 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 8.1E-32 1.7E-36 189.8 4.0 77 2-78 1-78 (83)
4 smart00432 MADS MADS domain. 100.0 4.2E-31 9E-36 173.7 3.6 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 2.1E-30 4.5E-35 170.5 3.3 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 6.5E-29 1.4E-33 158.2 -1.7 51 9-59 1-51 (51)
7 KOG0015 Regulator of arginine 99.8 5.3E-21 1.2E-25 159.6 2.0 75 2-76 63-146 (338)
8 PF01486 K-box: K-box region; 99.8 1E-18 2.2E-23 127.4 11.3 90 84-181 11-100 (100)
9 COG5068 ARG80 Regulator of arg 99.5 9.6E-15 2.1E-19 127.3 2.6 67 1-67 81-147 (412)
10 PF06005 DUF904: Protein of un 91.5 2.6 5.7E-05 28.6 8.3 47 119-178 1-47 (72)
11 PF01166 TSC22: TSC-22/dip/bun 89.8 0.85 1.8E-05 29.6 4.3 32 150-181 15-46 (59)
12 PF10584 Proteasome_A_N: Prote 89.4 0.08 1.7E-06 27.9 -0.5 15 42-56 2-16 (23)
13 PRK04098 sec-independent trans 87.0 0.41 8.8E-06 37.6 1.8 81 43-133 15-95 (158)
14 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.7 13 0.00029 28.0 10.6 31 151-181 100-130 (132)
15 PF08317 Spc7: Spc7 kinetochor 82.6 10 0.00022 33.1 8.8 59 114-180 201-261 (325)
16 PF06698 DUF1192: Protein of u 81.1 2.8 6.1E-05 27.4 3.6 33 110-142 12-44 (59)
17 PRK10884 SH3 domain-containing 80.1 31 0.00068 28.2 10.8 30 151-180 141-170 (206)
18 smart00787 Spc7 Spc7 kinetocho 79.9 12 0.00027 32.6 8.3 30 113-142 195-224 (312)
19 cd07429 Cby_like Chibby, a nuc 79.2 3.2 6.9E-05 30.5 3.8 21 160-180 76-96 (108)
20 PRK13169 DNA replication intia 78.1 17 0.00037 26.8 7.3 49 121-182 7-55 (110)
21 KOG4797 Transcriptional regula 78.0 13 0.00029 27.2 6.5 28 151-178 69-96 (123)
22 PF06156 DUF972: Protein of un 77.5 17 0.00036 26.6 7.2 48 122-182 8-55 (107)
23 TIGR02449 conserved hypothetic 77.3 19 0.0004 24.0 6.9 53 123-181 1-53 (65)
24 KOG4797 Transcriptional regula 75.4 6.2 0.00013 28.9 4.3 46 129-182 48-93 (123)
25 PF14662 CCDC155: Coiled-coil 75.2 43 0.00093 27.2 10.9 21 88-108 18-38 (193)
26 COG4467 Regulator of replicati 73.9 26 0.00056 25.7 7.2 48 121-181 7-54 (114)
27 PF07106 TBPIP: Tat binding pr 71.3 30 0.00066 27.0 7.9 53 89-142 113-165 (169)
28 PF10504 DUF2452: Protein of u 70.5 24 0.00053 27.7 6.9 46 120-170 28-73 (159)
29 KOG4252 GTP-binding protein [S 69.9 31 0.00068 28.0 7.5 102 39-173 91-192 (246)
30 PF00170 bZIP_1: bZIP transcri 67.1 28 0.0006 22.6 5.8 26 155-180 25-50 (64)
31 TIGR02338 gimC_beta prefoldin, 66.7 36 0.00078 24.7 6.9 45 127-180 61-105 (110)
32 COG0139 HisI Phosphoribosyl-AM 65.8 3.2 6.8E-05 30.6 1.0 40 16-55 49-97 (111)
33 PF06156 DUF972: Protein of un 65.6 36 0.00078 24.9 6.6 30 151-180 17-46 (107)
34 smart00338 BRLZ basic region l 65.1 27 0.00059 22.6 5.5 25 156-180 26-50 (65)
35 PF07716 bZIP_2: Basic region 63.1 35 0.00075 21.4 5.6 26 155-180 24-49 (54)
36 cd00187 TOP4c DNA Topoisomeras 61.8 77 0.0017 29.1 9.5 60 7-73 257-328 (445)
37 KOG1962 B-cell receptor-associ 61.3 69 0.0015 26.5 8.2 58 119-182 155-212 (216)
38 PHA03155 hypothetical protein; 60.2 68 0.0015 23.8 7.7 58 85-142 8-65 (115)
39 PF04849 HAP1_N: HAP1 N-termin 59.7 46 0.00099 29.0 7.2 29 154-182 239-267 (306)
40 PRK13169 DNA replication intia 59.1 22 0.00047 26.2 4.5 30 151-180 17-46 (110)
41 PF09151 DUF1936: Domain of un 57.9 8 0.00017 21.8 1.5 27 34-60 2-30 (36)
42 PRK15422 septal ring assembly 57.3 61 0.0013 22.4 8.0 40 119-171 1-40 (79)
43 PF05812 Herpes_BLRF2: Herpesv 57.3 79 0.0017 23.6 7.5 57 86-142 4-64 (118)
44 PRK11637 AmiB activator; Provi 57.1 1.5E+02 0.0032 26.8 10.9 80 86-180 48-127 (428)
45 PF10211 Ax_dynein_light: Axon 57.0 47 0.001 26.7 6.5 22 159-180 166-187 (189)
46 KOG0184 20S proteasome, regula 55.3 5.3 0.00012 33.1 0.8 25 36-60 3-29 (254)
47 PRK09343 prefoldin subunit bet 53.7 89 0.0019 23.1 8.6 42 130-180 68-109 (121)
48 TIGR01478 STEVOR variant surfa 53.3 37 0.0008 29.3 5.5 44 7-71 25-69 (295)
49 PF15254 CCDC14: Coiled-coil d 53.2 2E+02 0.0044 28.4 10.8 87 87-182 389-481 (861)
50 PF13870 DUF4201: Domain of un 52.8 1.1E+02 0.0024 24.0 11.8 83 87-180 8-101 (177)
51 TIGR02231 conserved hypothetic 52.7 2E+02 0.0042 26.8 10.8 50 117-175 122-171 (525)
52 PF06005 DUF904: Protein of un 52.7 70 0.0015 21.6 7.2 25 152-176 14-38 (72)
53 COG3074 Uncharacterized protei 52.4 71 0.0015 21.6 7.7 20 119-138 1-20 (79)
54 PF14009 DUF4228: Domain of un 51.5 12 0.00026 28.8 2.2 33 40-72 13-46 (181)
55 PRK00888 ftsB cell division pr 51.4 36 0.00078 24.7 4.6 25 156-180 34-58 (105)
56 KOG0183 20S proteasome, regula 51.3 7.1 0.00015 32.2 0.9 20 41-60 4-25 (249)
57 COG2433 Uncharacterized conser 51.2 2.3E+02 0.005 27.2 11.1 52 122-176 450-501 (652)
58 PF01502 PRA-CH: Phosphoribosy 50.8 4.3 9.2E-05 27.9 -0.4 37 17-53 18-63 (75)
59 KOG4643 Uncharacterized coiled 50.6 56 0.0012 33.1 6.9 46 129-182 281-327 (1195)
60 PF10491 Nrf1_DNA-bind: NLS-bi 50.2 14 0.00031 30.2 2.5 47 26-72 35-88 (214)
61 PRK10884 SH3 domain-containing 49.5 1.1E+02 0.0023 25.1 7.5 21 90-110 91-111 (206)
62 PF09941 DUF2173: Uncharacteri 49.3 19 0.00042 26.4 2.8 27 32-59 3-29 (108)
63 PHA02592 52 DNA topisomerase I 49.2 2.1E+02 0.0047 26.2 11.7 29 42-72 298-326 (439)
64 PF11365 DUF3166: Protein of u 49.0 47 0.001 23.9 4.7 31 151-181 10-40 (96)
65 PF10226 DUF2216: Uncharacteri 48.0 1.5E+02 0.0032 24.1 8.2 30 151-180 110-139 (195)
66 PRK13824 replication initiatio 47.5 76 0.0016 28.8 6.9 95 34-142 103-213 (404)
67 PF14645 Chibby: Chibby family 47.1 31 0.00067 25.6 3.7 25 156-180 71-95 (116)
68 cd00632 Prefoldin_beta Prefold 46.7 1.1E+02 0.0023 21.9 6.8 27 153-179 74-100 (105)
69 PRK13729 conjugal transfer pil 46.7 1E+02 0.0022 28.6 7.6 30 151-180 92-121 (475)
70 KOG0250 DNA repair protein RAD 46.2 2.9E+02 0.0063 28.4 11.0 59 44-109 621-685 (1074)
71 COG4831 Roadblock/LC7 domain [ 45.4 23 0.00049 25.5 2.6 30 30-60 3-32 (109)
72 PLN03230 acetyl-coenzyme A car 44.4 92 0.002 28.5 6.9 78 53-142 38-125 (431)
73 PF04977 DivIC: Septum formati 44.3 54 0.0012 21.7 4.4 32 151-182 19-50 (80)
74 KOG4311 Histidinol dehydrogena 43.9 67 0.0015 27.6 5.6 60 15-74 180-261 (359)
75 cd01109 HTH_YyaN Helix-Turn-He 43.8 91 0.002 22.5 5.8 53 118-179 57-109 (113)
76 PHA01750 hypothetical protein 42.9 1E+02 0.0022 20.6 6.8 44 129-180 30-73 (75)
77 PF14915 CCDC144C: CCDC144C pr 42.9 2.3E+02 0.0049 24.7 9.5 79 90-182 4-82 (305)
78 PF09744 Jnk-SapK_ap_N: JNK_SA 42.7 1.6E+02 0.0035 23.0 9.2 29 153-181 86-114 (158)
79 COG4467 Regulator of replicati 41.4 50 0.0011 24.3 3.9 27 154-180 20-46 (114)
80 PF10226 DUF2216: Uncharacteri 40.7 1.1E+02 0.0023 24.8 6.0 32 151-182 50-81 (195)
81 PF04849 HAP1_N: HAP1 N-termin 40.6 38 0.00082 29.5 3.7 25 157-181 161-185 (306)
82 TIGR02894 DNA_bind_RsfA transc 40.1 1.8E+02 0.004 22.9 10.9 59 116-180 77-135 (161)
83 TIGR00606 rad50 rad50. This fa 40.0 3E+02 0.0066 28.8 10.8 59 119-179 822-880 (1311)
84 TIGR03017 EpsF chain length de 39.9 2.8E+02 0.006 24.9 9.7 121 62-184 150-282 (444)
85 PF03980 Nnf1: Nnf1 ; InterPr 39.2 80 0.0017 22.7 4.8 32 151-182 75-106 (109)
86 KOG3684 Ca2+-activated K+ chan 38.4 3.3E+02 0.0071 25.3 10.4 67 101-179 405-471 (489)
87 PF05529 Bap31: B-cell recepto 38.4 1.9E+02 0.0042 22.9 7.4 31 151-181 156-186 (192)
88 PF08700 Vps51: Vps51/Vps67; 38.0 1.3E+02 0.0027 20.3 7.3 37 118-155 18-54 (87)
89 PF07558 Shugoshin_N: Shugoshi 37.8 39 0.00086 20.7 2.5 29 151-179 16-44 (46)
90 COG4917 EutP Ethanolamine util 37.7 21 0.00046 27.3 1.5 24 35-58 59-82 (148)
91 PHA03162 hypothetical protein; 37.2 1.9E+02 0.004 22.1 10.4 59 84-142 12-74 (135)
92 PF14775 NYD-SP28_assoc: Sperm 36.9 1.2E+02 0.0026 19.7 6.2 44 120-180 14-57 (60)
93 TIGR03752 conj_TIGR03752 integ 36.7 3.5E+02 0.0077 25.1 10.5 72 87-179 68-139 (472)
94 KOG4637 Adaptor for phosphoino 36.5 28 0.00061 31.2 2.3 43 33-75 367-414 (464)
95 KOG0971 Microtubule-associated 35.7 4.9E+02 0.011 26.5 11.3 54 87-140 327-389 (1243)
96 KOG0804 Cytoplasmic Zn-finger 35.5 3.6E+02 0.0079 24.9 10.0 25 151-175 384-408 (493)
97 PLN02939 transferase, transfer 35.4 1.4E+02 0.0031 30.3 7.2 25 150-174 377-401 (977)
98 smart00338 BRLZ basic region l 35.3 1.2E+02 0.0027 19.5 4.9 29 151-179 35-63 (65)
99 PF12548 DUF3740: Sulfatase pr 35.3 68 0.0015 24.8 4.1 42 128-178 94-135 (145)
100 KOG4196 bZIP transcription fac 34.7 1.1E+02 0.0023 23.3 4.8 30 151-180 76-105 (135)
101 PF11232 Med25: Mediator compl 34.4 27 0.00058 27.3 1.7 34 37-70 109-150 (152)
102 PLN03194 putative disease resi 34.3 1.5E+02 0.0032 24.0 5.9 30 39-68 79-108 (187)
103 PF07888 CALCOCO1: Calcium bin 33.7 4.2E+02 0.0092 25.1 12.0 26 154-179 211-236 (546)
104 PF13815 Dzip-like_N: Iguana/D 33.6 1.9E+02 0.0041 21.1 7.0 28 152-179 90-117 (118)
105 PRK10803 tol-pal system protei 32.8 19 0.00041 30.5 0.7 50 59-108 35-84 (263)
106 PF07676 PD40: WD40-like Beta 32.3 32 0.00068 19.5 1.4 19 42-60 10-28 (39)
107 cd04769 HTH_MerR2 Helix-Turn-H 31.9 1.2E+02 0.0025 22.1 4.8 14 118-131 56-69 (116)
108 cd01107 HTH_BmrR Helix-Turn-He 31.8 1.8E+02 0.004 20.7 5.7 49 117-179 57-105 (108)
109 TIGR02209 ftsL_broad cell divi 31.4 1.2E+02 0.0026 20.4 4.6 32 151-182 26-57 (85)
110 PF09789 DUF2353: Uncharacteri 31.0 3E+02 0.0065 24.2 7.8 104 20-139 34-143 (319)
111 PF15397 DUF4618: Domain of un 30.7 3.3E+02 0.0071 23.2 7.8 30 151-180 188-217 (258)
112 PTZ00370 STEVOR; Provisional 30.7 1.2E+02 0.0026 26.3 5.1 42 8-71 26-68 (296)
113 cd04787 HTH_HMRTR_unk Helix-Tu 29.9 1.7E+02 0.0036 21.8 5.4 53 118-179 57-109 (133)
114 KOG0946 ER-Golgi vesicle-tethe 29.8 5.9E+02 0.013 25.6 11.1 79 89-180 615-695 (970)
115 PF10186 Atg14: UV radiation r 29.6 3.3E+02 0.0071 22.6 10.4 10 55-64 11-20 (302)
116 PF06785 UPF0242: Uncharacteri 29.6 4.1E+02 0.0088 23.7 8.8 79 87-180 94-172 (401)
117 cd02980 TRX_Fd_family Thioredo 29.3 52 0.0011 21.6 2.3 30 39-69 47-77 (77)
118 TIGR03007 pepcterm_ChnLen poly 29.3 4.4E+02 0.0096 24.0 11.2 71 62-134 140-216 (498)
119 PF04880 NUDE_C: NUDE protein, 29.2 1.1E+02 0.0023 24.3 4.3 14 124-137 2-15 (166)
120 PF13815 Dzip-like_N: Iguana/D 29.0 94 0.002 22.8 3.8 36 144-180 69-104 (118)
121 COG3883 Uncharacterized protei 28.9 3.3E+02 0.0072 23.3 7.5 21 122-142 80-100 (265)
122 PF09278 MerR-DNA-bind: MerR, 28.9 1.6E+02 0.0034 18.6 5.1 11 118-128 14-24 (65)
123 PF11629 Mst1_SARAH: C termina 28.5 74 0.0016 19.9 2.6 27 115-141 4-34 (49)
124 PF07407 Seadorna_VP6: Seadorn 28.5 1.4E+02 0.0031 26.4 5.3 36 113-168 23-58 (420)
125 PLN03229 acetyl-coenzyme A car 28.4 2.1E+02 0.0045 28.2 6.8 92 43-142 50-146 (762)
126 PF09789 DUF2353: Uncharacteri 28.4 4.1E+02 0.0089 23.3 9.9 33 151-183 81-113 (319)
127 PF05812 Herpes_BLRF2: Herpesv 28.3 92 0.002 23.3 3.6 27 157-183 4-30 (118)
128 PHA02109 hypothetical protein 28.3 2.4E+02 0.0051 22.7 6.1 25 109-133 178-204 (233)
129 TIGR02047 CadR-PbrR Cd(II)/Pb( 28.3 1.8E+02 0.0039 21.5 5.3 28 152-179 82-109 (127)
130 PF10623 PilI: Plasmid conjuga 28.3 53 0.0012 22.7 2.1 31 42-72 8-41 (83)
131 KOG0837 Transcriptional activa 27.6 2.4E+02 0.0051 24.2 6.3 55 114-178 192-249 (279)
132 TIGR02976 phageshock_pspB phag 27.6 1.2E+02 0.0025 20.7 3.8 43 65-107 22-64 (75)
133 TIGR00219 mreC rod shape-deter 27.3 1E+02 0.0023 26.3 4.3 18 166-183 94-111 (283)
134 KOG4005 Transcription factor X 27.3 1.1E+02 0.0024 25.8 4.2 30 151-180 106-135 (292)
135 KOG4673 Transcription factor T 27.0 6E+02 0.013 25.1 9.4 29 152-180 405-433 (961)
136 PHA03155 hypothetical protein; 26.7 1.1E+02 0.0023 22.8 3.6 25 158-182 10-34 (115)
137 cd04776 HTH_GnyR Helix-Turn-He 26.6 2.6E+02 0.0056 20.4 5.9 26 152-177 83-108 (118)
138 KOG0709 CREB/ATF family transc 26.4 51 0.0011 30.3 2.3 63 117-180 232-310 (472)
139 PF10224 DUF2205: Predicted co 26.3 2.2E+02 0.0049 19.6 6.6 23 159-181 40-62 (80)
140 PF07888 CALCOCO1: Calcium bin 26.2 5.7E+02 0.012 24.3 10.9 29 31-60 78-113 (546)
141 PF12018 DUF3508: Domain of un 26.1 42 0.0009 28.7 1.7 32 19-60 210-241 (281)
142 PF01920 Prefoldin_2: Prefoldi 26.1 2.3E+02 0.005 19.6 8.0 25 156-180 76-100 (106)
143 PF04999 FtsL: Cell division p 25.8 1.7E+02 0.0036 20.4 4.5 31 151-181 37-67 (97)
144 PHA03162 hypothetical protein; 25.6 1.1E+02 0.0024 23.3 3.6 26 157-182 14-39 (135)
145 PF12128 DUF3584: Protein of u 25.4 6.9E+02 0.015 26.0 10.5 62 111-172 763-839 (1201)
146 PF06785 UPF0242: Uncharacteri 25.2 4.9E+02 0.011 23.2 8.0 51 121-180 101-151 (401)
147 PF06667 PspB: Phage shock pro 25.0 1.4E+02 0.0031 20.3 3.8 44 65-108 22-65 (75)
148 PRK11637 AmiB activator; Provi 24.9 5.1E+02 0.011 23.3 11.0 23 152-174 106-128 (428)
149 TIGR01950 SoxR redox-sensitive 24.8 1.6E+02 0.0036 22.3 4.6 55 118-180 57-111 (142)
150 PF07956 DUF1690: Protein of U 24.6 3.2E+02 0.007 20.9 9.0 73 64-136 13-92 (142)
151 PF05991 NYN_YacP: YacP-like N 24.6 3.4E+02 0.0073 21.1 7.7 109 20-129 23-163 (166)
152 PF02009 Rifin_STEVOR: Rifin/s 24.6 54 0.0012 28.5 2.1 30 37-74 20-49 (299)
153 COG1382 GimC Prefoldin, chaper 24.6 3E+02 0.0066 20.5 9.0 42 130-180 67-108 (119)
154 COG5000 NtrY Signal transducti 24.4 47 0.001 31.9 1.7 22 36-57 374-395 (712)
155 TIGR00606 rad50 rad50. This fa 24.3 7.8E+02 0.017 25.9 10.7 29 152-180 265-293 (1311)
156 cd01282 HTH_MerR-like_sg3 Heli 24.1 2.6E+02 0.0055 20.1 5.4 26 152-177 84-109 (112)
157 PF03670 UPF0184: Uncharacteri 23.7 2.6E+02 0.0057 19.5 6.1 42 124-181 31-72 (83)
158 PRK10227 DNA-binding transcrip 23.7 2.3E+02 0.005 21.3 5.2 54 118-180 57-110 (135)
159 COG0216 PrfA Protein chain rel 23.6 5.3E+02 0.012 23.0 9.7 94 61-175 8-102 (363)
160 TIGR01005 eps_transp_fam exopo 23.5 6.9E+02 0.015 24.3 11.3 97 87-183 196-315 (754)
161 COG1579 Zn-ribbon protein, pos 23.5 4.5E+02 0.0097 22.1 10.4 24 119-142 86-109 (239)
162 PF07106 TBPIP: Tat binding pr 23.4 3.5E+02 0.0077 20.9 8.6 52 87-142 81-132 (169)
163 PF13252 DUF4043: Protein of u 23.1 42 0.00091 29.7 1.2 28 31-58 270-299 (341)
164 PF09177 Syntaxin-6_N: Syntaxi 23.1 2.7E+02 0.0059 19.4 5.2 76 61-138 16-93 (97)
165 cd03064 TRX_Fd_NuoE TRX-like [ 23.0 69 0.0015 21.4 2.0 28 39-69 52-80 (80)
166 smart00340 HALZ homeobox assoc 23.0 1.4E+02 0.0031 18.1 3.0 24 159-182 8-31 (44)
167 PF08702 Fib_alpha: Fibrinogen 22.8 3.6E+02 0.0077 20.7 8.1 26 48-73 7-34 (146)
168 PF03428 RP-C: Replication pro 22.7 1.7E+02 0.0037 23.3 4.5 62 41-110 96-169 (177)
169 cd04785 HTH_CadR-PbrR-like Hel 22.6 2.7E+02 0.0059 20.4 5.4 53 118-179 57-109 (126)
170 COG5068 ARG80 Regulator of arg 22.3 59 0.0013 29.4 1.9 58 8-71 18-76 (412)
171 PF06657 Cep57_MT_bd: Centroso 22.2 2.7E+02 0.0058 19.0 8.0 52 87-142 19-70 (79)
172 cd08888 SRPBCC_PITPNA-B_like L 22.1 1.1E+02 0.0024 26.0 3.4 29 112-140 230-258 (258)
173 PF07926 TPR_MLP1_2: TPR/MLP1/ 22.1 3.4E+02 0.0073 20.2 7.4 12 149-160 119-130 (132)
174 cd04770 HTH_HMRTR Helix-Turn-H 22.0 2.8E+02 0.0061 20.1 5.3 53 118-179 57-109 (123)
175 TIGR01916 F420_cofE F420-0:gam 21.9 63 0.0014 27.2 1.9 27 34-60 134-160 (243)
176 TIGR02168 SMC_prok_B chromosom 21.8 8.3E+02 0.018 24.6 11.0 12 47-58 139-150 (1179)
177 cd01108 HTH_CueR Helix-Turn-He 21.6 3E+02 0.0066 20.2 5.5 54 118-180 57-110 (127)
178 COG5179 TAF1 Transcription ini 21.5 79 0.0017 30.5 2.6 47 26-73 446-492 (968)
179 PF02183 HALZ: Homeobox associ 21.5 2E+02 0.0044 17.4 4.8 31 151-181 7-37 (45)
180 PF06020 Roughex: Drosophila r 21.4 44 0.00096 28.9 0.9 16 36-51 183-198 (334)
181 KOG0930 Guanine nucleotide exc 21.1 3.2E+02 0.007 23.8 6.0 43 116-175 8-50 (395)
182 PF10337 DUF2422: Protein of u 20.9 4E+02 0.0086 24.3 7.1 52 87-138 257-309 (459)
183 PF04873 EIN3: Ethylene insens 20.8 33 0.00071 30.6 0.0 42 22-63 50-92 (354)
184 PRK13922 rod shape-determining 20.7 1.9E+02 0.0042 24.3 4.7 33 151-183 78-113 (276)
185 PF08946 Osmo_CC: Osmosensory 20.5 2.2E+02 0.0048 17.5 3.7 21 152-172 22-42 (46)
186 PRK15422 septal ring assembly 20.4 3E+02 0.0066 19.0 6.5 23 156-178 18-40 (79)
187 PRK15002 redox-sensitivie tran 20.2 2.7E+02 0.0058 21.6 5.0 54 118-179 67-120 (154)
188 PRK09514 zntR zinc-responsive 20.1 2.7E+02 0.0059 20.9 5.0 27 152-178 84-110 (140)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=3.2e-39 Score=261.51 Aligned_cols=163 Identities=47% Similarity=0.661 Sum_probs=131.0
Q ss_pred CCCcccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccchh--hhhhHHhhhhccccccc
Q 028363 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS--INKTIERYQKKTKDIGI 78 (210)
Q Consensus 1 MgR~Ki~ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~--~~~IieRY~~~~~~~~~ 78 (210)
|||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|++++ |.+|++||...+.....
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999998875 99999999998766543
Q ss_pred cccccccc---------------h-----HHHHHHHHhHHhHHHHHHHH---HHhhcCCCCCCCCH-HHHHHHHHHHHHH
Q 028363 79 NSKIVEDH---------------S-----QHAKEETSNMMTKLEFLEVA---KRKLLGDGLEPCTI-DELQQLENQLERS 134 (210)
Q Consensus 79 ~~~~~~~~---------------~-----e~lk~e~~kL~~~ie~le~~---~r~~~Ge~L~~Ls~-~EL~~LE~~Le~~ 134 (210)
........ . .....+...+....+.+... .+++.|+++.+++. .+|..++.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 33221110 0 11233445555556555533 68899999999999 9999999999999
Q ss_pred HHHHHHhhhhccccchhhHHHHHHH-HHHHHHHHHHHH
Q 028363 135 LSRIRARKFRNLVFSQNQLFREQIE-KLKEKEKILIEE 171 (210)
Q Consensus 135 L~~Ir~RK~~~~~~~~~~ll~~~i~-~l~~k~~~l~ee 171 (210)
+..++..+ ...+.+++. .++.+...+..+
T Consensus 161 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 190 (195)
T KOG0014|consen 161 LHNSRSSK--------SKPLSDSNFQVLQEKEKSLEAE 190 (195)
T ss_pred hcCCCCCC--------CcCCcchhhhhhcccchhcccc
Confidence 99999999 777777765 555555544433
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=5.6e-35 Score=203.01 Aligned_cols=75 Identities=76% Similarity=1.040 Sum_probs=72.7
Q ss_pred CCcccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccchhhhhhHHhhhhccccc
Q 028363 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDI 76 (210)
Q Consensus 2 gR~Ki~ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~IieRY~~~~~~~ 76 (210)
||+||+|++|+|+.+|++||+||++||||||+||||||||+||+|||||+|++|+|+||++++||+||...++..
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~~ 75 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGSS 75 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987654
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=8.1e-32 Score=189.83 Aligned_cols=77 Identities=52% Similarity=0.738 Sum_probs=72.4
Q ss_pred CCcccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccchh-hhhhHHhhhhccccccc
Q 028363 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS-INKTIERYQKKTKDIGI 78 (210)
Q Consensus 2 gR~Ki~ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~-~~~IieRY~~~~~~~~~ 78 (210)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+++.|++++ +..++++|...+...+.
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERK 78 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhh
Confidence 899999999999999999999999999999999999999999999999999999987765 99999999998876543
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=4.2e-31 Score=173.66 Aligned_cols=59 Identities=78% Similarity=1.100 Sum_probs=58.0
Q ss_pred CCcccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccch
Q 028363 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60 (210)
Q Consensus 2 gR~Ki~ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~ 60 (210)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999886
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=2.1e-30 Score=170.45 Aligned_cols=59 Identities=80% Similarity=1.116 Sum_probs=57.7
Q ss_pred CCcccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccch
Q 028363 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60 (210)
Q Consensus 2 gR~Ki~ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~ 60 (210)
||+||+|++|+|+..|++||+||+.||||||+||||||||+||+|||||+|+++.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 89999999999999999999999999999999999999999999999999999999875
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.94 E-value=6.5e-29 Score=158.20 Aligned_cols=51 Identities=69% Similarity=1.072 Sum_probs=47.1
Q ss_pred eeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccc
Q 028363 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59 (210)
Q Consensus 9 k~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s 59 (210)
|+|+|++.|++||+||+.||||||+||||||||+||+|||||+|++|.|||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999987
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.81 E-value=5.3e-21 Score=159.59 Aligned_cols=75 Identities=37% Similarity=0.554 Sum_probs=66.1
Q ss_pred CCcccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccchhhh---------hhHHhhhhc
Q 028363 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSIN---------KTIERYQKK 72 (210)
Q Consensus 2 gR~Ki~ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~---------~IieRY~~~ 72 (210)
||+||+|++|+|+..|.|||||||.||||||+|||||.|.+|-|+|.|.+|.+|.|+.|.++ ++|.-..+.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~ 142 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA 142 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999998544 455555555
Q ss_pred cccc
Q 028363 73 TKDI 76 (210)
Q Consensus 73 ~~~~ 76 (210)
+...
T Consensus 143 pd~~ 146 (338)
T KOG0015|consen 143 PDTP 146 (338)
T ss_pred CCCC
Confidence 5443
No 8
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.79 E-value=1e-18 Score=127.43 Aligned_cols=90 Identities=42% Similarity=0.623 Sum_probs=86.6
Q ss_pred ccchHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHH
Q 028363 84 EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKE 163 (210)
Q Consensus 84 ~~~~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~ 163 (210)
..+.+.+..++.+|+.+++.|+..+|+++|++|++||++||..||.+|+.+|.+||+|| +++|.++|+.|++
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK--------~~~l~~~i~~l~~ 82 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRK--------DQLLMEQIEELKK 82 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHH--------HHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 028363 164 KEKILIEENTKLREQCGM 181 (210)
Q Consensus 164 k~~~l~een~~L~~~~~~ 181 (210)
|+..|.++|..|+.++.+
T Consensus 83 ke~~l~~en~~L~~~~~e 100 (100)
T PF01486_consen 83 KERELEEENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999998763
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.49 E-value=9.6e-15 Score=127.31 Aligned_cols=67 Identities=40% Similarity=0.603 Sum_probs=62.8
Q ss_pred CCCcccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccchhhhhhHH
Q 028363 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIE 67 (210)
Q Consensus 1 MgR~Ki~ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~Iie 67 (210)
|||+|+.|.+|+|+.+|.|||+||+.||+|||.||+||.|.+|.|+|.|.+|+++.|+.|..+.|+.
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~ 147 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK 147 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999985555543
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.47 E-value=2.6 Score=28.61 Aligned_cols=47 Identities=34% Similarity=0.517 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 119 CTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~ 178 (210)
+|++.|..||..+..++..|..=+ .+++.|+.+...|.++|..|...
T Consensus 1 M~~E~l~~LE~ki~~aveti~~Lq-------------~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALLQ-------------MENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhHHHHHHHHHHH
Confidence 478889999999999999887655 45556666655444444444443
No 11
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=89.77 E-value=0.85 Score=29.57 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 150 QNQLFREQIEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 150 ~~~ll~~~i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
+.+.+.++|.+|..+...|+.||..|+..+..
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~p 46 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNASP 46 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 46889999999999999999999999987663
No 12
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=89.44 E-value=0.08 Score=27.89 Aligned_cols=15 Identities=33% Similarity=0.888 Sum_probs=11.7
Q ss_pred ceeeeeecCCCCccc
Q 028363 42 EVALIIFSPRGKLYE 56 (210)
Q Consensus 42 ~valivfs~~gk~~~ 56 (210)
|-.+.+|||.|+++.
T Consensus 2 D~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 2 DRSITTFSPDGRLFQ 16 (23)
T ss_dssp SSSTTSBBTTSSBHH
T ss_pred CCCceeECCCCeEEe
Confidence 345678999999984
No 13
>PRK04098 sec-independent translocase; Provisional
Probab=86.99 E-value=0.41 Score=37.55 Aligned_cols=81 Identities=25% Similarity=0.240 Sum_probs=44.8
Q ss_pred eeeeeecCCCCcccccchhhhhhHHhhhhccccccccccccccchHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHH
Q 028363 43 VALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTID 122 (210)
Q Consensus 43 valivfs~~gk~~~~~s~~~~~IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~ 122 (210)
||||||+|. +++..+. .+...+..|++.....+..- ..+-.+..++.+..+.+..++.....+|. .++++
T Consensus 15 VaLlvfGP~-KLP~~~r-~lGk~ir~~K~~~~~~k~~l-~~Ei~~~elk~e~~k~k~~l~~~~~~l~~-------~~~~e 84 (158)
T PRK04098 15 VAIIFLGPD-KLPQAMV-DIAKFFKAVKKTINDAKSTL-DKEINIEEIKEEALKYKKEFESAVESLKK-------KLKFE 84 (158)
T ss_pred HHHhhcCch-HHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHh-------ccChH
Confidence 789999998 6665543 45555666665543321100 00113445666666666666655554442 26677
Q ss_pred HHHHHHHHHHH
Q 028363 123 ELQQLENQLER 133 (210)
Q Consensus 123 EL~~LE~~Le~ 133 (210)
+|.++-..+..
T Consensus 85 el~~~~~~~~~ 95 (158)
T PRK04098 85 ELDDLKITAEN 95 (158)
T ss_pred HHHHHhhhhhh
Confidence 77776544444
No 14
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.71 E-value=13 Score=27.97 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
...|..+++.++++...|..+|..|..++..
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4788899999999999999999999998864
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.62 E-value=10 Score=33.14 Aligned_cols=59 Identities=31% Similarity=0.537 Sum_probs=39.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 114 DGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQL--FREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 114 e~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~l--l~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
..++.++.++|..+...|...-..|..++ ..+ +..+.+.++.++..+.++...+...+.
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k--------~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKK--------KELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999988888777 332 334445555555544444444444433
No 16
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=81.15 E-value=2.8 Score=27.36 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=27.3
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 110 KLLGDGLEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 110 ~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
+..|+||+.||++||.+--..|+.-+.+++.-.
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999998888888777777654
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.13 E-value=31 Score=28.23 Aligned_cols=30 Identities=13% Similarity=0.005 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
++-+.+++..++.+...|..+|..+.+...
T Consensus 141 n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 141 NQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888888876654
No 18
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.87 E-value=12 Score=32.60 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=26.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 113 GDGLEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 113 Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
-++++.++.++|..+...|......|...+
T Consensus 195 ~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~ 224 (312)
T smart00787 195 EDELEDCDPTELDRAKEKLKKLLQEIMIKV 224 (312)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 366889999999999999999998888877
No 19
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=79.22 E-value=3.2 Score=30.51 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 028363 160 KLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 160 ~l~~k~~~l~een~~L~~~~~ 180 (210)
.++++...|+|||+.|+.+++
T Consensus 76 rlkkk~~~LeEENNlLklKie 96 (108)
T cd07429 76 RLKKKNQQLEEENNLLKLKIE 96 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888876
No 20
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=78.07 E-value=17 Score=26.80 Aligned_cols=49 Identities=37% Similarity=0.419 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 121 IDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 121 ~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
++.+.+||.+|...+..+.+=| .++..+-..-..|.-||..|+.++...
T Consensus 7 fd~l~~le~~l~~l~~el~~LK-------------~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALK-------------KQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777777777777766666 344456666677778888888888853
No 21
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=77.99 E-value=13 Score=27.23 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~ 178 (210)
.+.+.++|.+|..+...|++||..|+.-
T Consensus 69 Ve~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 69 VEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677778888888888888888877654
No 22
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=77.54 E-value=17 Score=26.65 Aligned_cols=48 Identities=38% Similarity=0.447 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 122 DELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 122 ~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
+.+.+||.+|...+..|.+=| .++..|-..-..|.-||..|+.++...
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK-------------~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELK-------------KQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777776666666555 334455555666777777788877643
No 23
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=77.28 E-value=19 Score=24.01 Aligned_cols=53 Identities=34% Similarity=0.470 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 123 ELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 123 EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
+|..|+..|+.-+.....=+ .++.++.++...++..-..|.+.|..-+.+++.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~------~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLK------SENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888887776655 236677777777777777777777777766653
No 24
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=75.43 E-value=6.2 Score=28.92 Aligned_cols=46 Identities=26% Similarity=0.403 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 129 NQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 129 ~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
..++.++.-|+..- +--..++++.|+.+.+.|.+.|..|..+....
T Consensus 48 NKIeQAMDLVKtHL--------mfAVREEVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 48 NKIEQAMDLVKTHL--------MFAVREEVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred hHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777 77778999999999999999999998876543
No 25
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=75.17 E-value=43 Score=27.17 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=9.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHH
Q 028363 88 QHAKEETSNMMTKLEFLEVAK 108 (210)
Q Consensus 88 e~lk~e~~kL~~~ie~le~~~ 108 (210)
+.+..+..+|+..++.++...
T Consensus 18 ~~L~~en~kL~~~ve~~ee~n 38 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGN 38 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444333
No 26
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=73.90 E-value=26 Score=25.70 Aligned_cols=48 Identities=35% Similarity=0.476 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 121 IDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 121 ~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
++.+.+||.+|-..+..|-.-| +++..|-..-..|.=||..|+++++.
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK-------------~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLK-------------QHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3567777888777777776666 33345555566677788888888887
No 27
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.34 E-value=30 Score=27.00 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=28.0
Q ss_pred HHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 89 HAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 89 ~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
.+...+..|..+++.++..+..+.+ +-...+.+|...++.......+..+.||
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444443 2233556666666666666666555555
No 28
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=70.53 E-value=24 Score=27.67 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 028363 120 TIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIE 170 (210)
Q Consensus 120 s~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~e 170 (210)
+..||..|-++++.+-.-+|++- +++..++.+||..|+++-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t-----~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANT-----CNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999887 33467888999999987776654
No 29
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=69.90 E-value=31 Score=28.01 Aligned_cols=102 Identities=23% Similarity=0.373 Sum_probs=52.8
Q ss_pred cCcceeeeeecCCCCcccccchhhhhhHHhhhhccccccccccccccchHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCC
Q 028363 39 CDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEP 118 (210)
Q Consensus 39 Cda~valivfs~~gk~~~~~s~~~~~IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~ 118 (210)
-||++||+|||.+++ -|.+.+++=|.+.......-..+.-+ .+|+.++.. -
T Consensus 91 rgaqa~vLVFSTTDr------~SFea~~~w~~kv~~e~~~IPtV~vq-------------NKIDlveds----------~ 141 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDR------YSFEATLEWYNKVQKETERIPTVFVQ-------------NKIDLVEDS----------Q 141 (246)
T ss_pred ccccceEEEEecccH------HHHHHHHHHHHHHHHHhccCCeEEee-------------ccchhhHhh----------h
Confidence 589999999998864 14566666666544332211112111 122222211 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 028363 119 CTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENT 173 (210)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~ 173 (210)
+.-+|...|-+.|...|-++-.++ -++-++.+.--++.+.++.+.--.+|.
T Consensus 142 ~~~~evE~lak~l~~RlyRtSvke----d~NV~~vF~YLaeK~~q~~kq~~~~~~ 192 (246)
T KOG4252|consen 142 MDKGEVEGLAKKLHKRLYRTSVKE----DFNVMHVFAYLAEKLTQQKKQSLNANE 192 (246)
T ss_pred cchHHHHHHHHHhhhhhhhhhhhh----hhhhHHHHHHHHHHHHHHHHHHhhhch
Confidence 233455666666777776666666 222246666555655554444333333
No 30
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=67.14 E-value=28 Score=22.57 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 155 REQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 155 ~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
...++.|..++..|..+|..|...+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~ 50 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELE 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777766554
No 31
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=66.66 E-value=36 Score=24.68 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 127 LENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 127 LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
++...+.++..+..|+ +.+...|..+.++...+.+.-..+...+.
T Consensus 61 v~~~~~e~~~~l~~r~---------e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 61 VKTDKEEAIQELKEKK---------ETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred heecHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666 33366666666666666666665555543
No 32
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=65.83 E-value=3.2 Score=30.56 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=29.5
Q ss_pred Cccccccccccch---------hhhhhhhhcccCcceeeeeecCCCCcc
Q 028363 16 SRQVTFSKRRNGL---------LKKAFELSVLCDAEVALIIFSPRGKLY 55 (210)
Q Consensus 16 ~RqvTf~KRr~GL---------~KKA~ELsvLCda~valivfs~~gk~~ 55 (210)
.+-..||+-|+-| +-|+.|+.+-||.|+-+++..+.|.+.
T Consensus 49 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg~a 97 (111)
T COG0139 49 GEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGGPA 97 (111)
T ss_pred CeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCCCc
Confidence 3444557766644 555789999999999999999966543
No 33
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=65.55 E-value=36 Score=24.88 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
..-+.+++..|+..+..|.+||..|+....
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~ 46 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENE 46 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355668899999999999999999988765
No 34
>smart00338 BRLZ basic region leucin zipper.
Probab=65.15 E-value=27 Score=22.64 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 156 EQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 156 ~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
..+..|..++..|..+|..|..++.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~ 50 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIE 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666665554
No 35
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=63.07 E-value=35 Score=21.37 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 155 REQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 155 ~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
...+..|...+..|..+|..|..++.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888877764
No 36
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=61.82 E-value=77 Score=29.13 Aligned_cols=60 Identities=18% Similarity=0.450 Sum_probs=37.6
Q ss_pred ceeeecCCCCc-ccccc---ccc-------cchhhhhh-hhhcccCcceeeeeecCCCCcccccchhhhhhHHhhhhcc
Q 028363 7 QMKRIENATSR-QVTFS---KRR-------NGLLKKAF-ELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKT 73 (210)
Q Consensus 7 ~ik~I~n~~~R-qvTf~---KRr-------~GL~KKA~-ELsvLCda~valivfs~~gk~~~~~s~~~~~IieRY~~~~ 73 (210)
.|.-|.+.+.| .+.|. ||. .+|+|+-. +-++-| -+++|.++|+|..| ++.+||..|..+-
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~----Nm~~~~~~g~p~~~---~l~~iL~~f~~~R 328 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGI----NMVAFDPNGRPKKL---NLKEILQEFLDHR 328 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhcCCceeeee----eEEEEecCCeeEEe---CHHHHHHHHHHHH
Confidence 46677777777 34442 332 25554432 222223 67888899998888 6789999887753
No 37
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=61.29 E-value=69 Score=26.51 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 119 CTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
-..+|+..|+..++..-....... ++..-+.-|.+.+.+....|-|+|..|+.++...
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~------~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQ------KKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 334577777777777666665555 1245566888999999999999999999998754
No 38
>PHA03155 hypothetical protein; Provisional
Probab=60.20 E-value=68 Score=23.76 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=47.6
Q ss_pred cchHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 85 DHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 85 ~~~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
..++.+..++.+|+-++..|...+++-.+++-.-|+..+=..+-.....+|...-++|
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999988776655555577999999888888888888877777
No 39
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=59.66 E-value=46 Score=29.03 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 154 FREQIEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 154 l~~~i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
+..+|-+++++.+.+.-||..|...+...
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45788889999999999999988877643
No 40
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=59.10 E-value=22 Score=26.23 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
..-+..++..|++.+..|.+||..|+-...
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~iEN~ 46 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRLEND 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667899999999999999999988744
No 41
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=57.92 E-value=8 Score=21.81 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=17.7
Q ss_pred hhhcccCcceeeeeecCCCC--cccccch
Q 028363 34 ELSVLCDAEVALIIFSPRGK--LYEFSSC 60 (210)
Q Consensus 34 ELsvLCda~valivfs~~gk--~~~~~s~ 60 (210)
.|+--||+-|-+-||...|. .|..+.|
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvfrcsnp 30 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVFRCSNP 30 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEEEES-T
T ss_pred ccCCccCceEEEEeecCCCcEEEEEcCCC
Confidence 36677999999999999995 4544555
No 42
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=57.35 E-value=61 Score=22.38 Aligned_cols=40 Identities=30% Similarity=0.572 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 028363 119 CTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEE 171 (210)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~ee 171 (210)
+|++=|..||..+..++..|- ++.-+|++|+.+-..|.++
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-------------LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-------------LLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 467778888888888887764 4445566666665555443
No 43
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=57.26 E-value=79 Score=23.60 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=43.3
Q ss_pred chHHHHHHHHhHHhHHHHHHHHHHhhcC----CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 86 HSQHAKEETSNMMTKLEFLEVAKRKLLG----DGLEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 86 ~~e~lk~e~~kL~~~ie~le~~~r~~~G----e~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
.++.+..++.+|+-++..|...+++-.| .+-.-|+..+=..+-.....+|...-.+|
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K 64 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999988888777 66677999998888888888887777777
No 44
>PRK11637 AmiB activator; Provisional
Probab=57.12 E-value=1.5e+02 Score=26.76 Aligned_cols=80 Identities=10% Similarity=0.204 Sum_probs=40.7
Q ss_pred chHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHH
Q 028363 86 HSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKE 165 (210)
Q Consensus 86 ~~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~ 165 (210)
+++.++.++..++.++..++..+... ..+|..++.+|...-..|.... .+..-+..+|+.++...
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~---------~~~l~~l~~qi~~~~~~i~~~~------~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASL---------LAQLKKQEEAISQASRKLRETQ------NTLNQLNKQIDELNASI 112 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 34445555555555555444443322 2356666666666655555544 11334445566666655
Q ss_pred HHHHHHHHHHHHHhc
Q 028363 166 KILIEENTKLREQCG 180 (210)
Q Consensus 166 ~~l~een~~L~~~~~ 180 (210)
..++.+-..++..++
T Consensus 113 ~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 113 AKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555544444444
No 45
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.96 E-value=47 Score=26.71 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 028363 159 EKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 159 ~~l~~k~~~l~een~~L~~~~~ 180 (210)
...+..+..|...|..|+.+++
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555556666666554
No 46
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=55.27 E-value=5.3 Score=33.07 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=20.5
Q ss_pred hcccCcceeeeeecCCCCccc--ccch
Q 028363 36 SVLCDAEVALIIFSPRGKLYE--FSSC 60 (210)
Q Consensus 36 svLCda~valivfs~~gk~~~--~~s~ 60 (210)
||=.|-|.|.-+|||+|+.|+ |+..
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~K 29 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQK 29 (254)
T ss_pred cccccccccceeeCCCCceehHHHHHH
Confidence 455788999999999999996 7664
No 47
>PRK09343 prefoldin subunit beta; Provisional
Probab=53.66 E-value=89 Score=23.14 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 130 QLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 130 ~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
..+.+...+..|+ +.+...|..|.++...+.+.-..+...+.
T Consensus 68 d~~e~~~~l~~r~---------E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 68 DKTKVEKELKERK---------ELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred cHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554 34445556666666665555555544443
No 48
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=53.31 E-value=37 Score=29.26 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=31.6
Q ss_pred ceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccc-hhhhhhHHhhhh
Q 028363 7 QMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS-CSINKTIERYQK 71 (210)
Q Consensus 7 ~ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s-~~~~~IieRY~~ 71 (210)
.+..|.|.+.|..+=++ .||..|.+ ++| .|-+ |.|++|++.|..
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 46788898888776332 57888875 444 2444 799999999865
No 49
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=53.21 E-value=2e+02 Score=28.43 Aligned_cols=87 Identities=22% Similarity=0.224 Sum_probs=52.3
Q ss_pred hHHHHHHHHhHHhHHHHHHHHHHhhc------CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHH
Q 028363 87 SQHAKEETSNMMTKLEFLEVAKRKLL------GDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEK 160 (210)
Q Consensus 87 ~e~lk~e~~kL~~~ie~le~~~r~~~------Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~ 160 (210)
++-++.|..-|++++..|...+|.-. |..--++-+--|+.|-..|+..|..-..- -+++...-++
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~---------~e~lq~knee 459 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKS---------QELLQSKNEE 459 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHh---------HHHHHHhHHH
Confidence 34566777777777776665555321 21111344446666665665555543322 3566666777
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q 028363 161 LKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 161 l~~k~~~l~een~~L~~~~~~~ 182 (210)
|-+-...+.+||+.|...+.+.
T Consensus 460 llk~~e~q~~Enk~~~~~~~ek 481 (861)
T PF15254_consen 460 LLKVIENQKEENKRLRKMFQEK 481 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8788888888898888776643
No 50
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=52.77 E-value=1.1e+02 Score=23.96 Aligned_cols=83 Identities=23% Similarity=0.328 Sum_probs=50.7
Q ss_pred hHHHHHHHHhHHhHHHHHHHHHHhh--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHH---------
Q 028363 87 SQHAKEETSNMMTKLEFLEVAKRKL--LGDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFR--------- 155 (210)
Q Consensus 87 ~e~lk~e~~kL~~~ie~le~~~r~~--~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~--------- 155 (210)
+..++-.+..++.++..++..++.. .| ++|++-|..+|.-.-......|.+|- .++..
T Consensus 8 i~~~Rl~~~~lk~~l~k~~~ql~~ke~lg---e~L~~iDFeqLkien~~l~~kIeERn--------~eL~~Lk~~~~~~v 76 (177)
T PF13870_consen 8 ISKLRLKNITLKHQLAKLEEQLRQKEELG---EGLHLIDFEQLKIENQQLNEKIEERN--------KELLKLKKKIGKTV 76 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 4555666666667776666665554 34 44677777777777777777776666 33332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 156 EQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 156 ~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
..+...+.|...+..++..++..+.
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~l~ 101 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQELK 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2244555666666666666666555
No 51
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=52.70 E-value=2e+02 Score=26.77 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 117 EPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKL 175 (210)
Q Consensus 117 ~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L 175 (210)
+..++.++.++-..+...+..++.+. . -+..++..++++...|+.+-..|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTED--------R-EAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 35688899999999999888888877 3 34455566666666665554444
No 52
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=52.70 E-value=70 Score=21.61 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 152 QLFREQIEKLKEKEKILIEENTKLR 176 (210)
Q Consensus 152 ~ll~~~i~~l~~k~~~l~een~~L~ 176 (210)
+-..+.|..|+.++..|.++|..|.
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344455555555555555555554
No 53
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.41 E-value=71 Score=21.59 Aligned_cols=20 Identities=15% Similarity=0.524 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 028363 119 CTIDELQQLENQLERSLSRI 138 (210)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~I 138 (210)
+|++=|..||..+..++..|
T Consensus 1 MSlEv~ekLE~KiqqAvdTI 20 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI 20 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 35566667777776666554
No 54
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=51.46 E-value=12 Score=28.85 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=25.1
Q ss_pred CcceeeeeecCCCCcccccch-hhhhhHHhhhhc
Q 028363 40 DAEVALIIFSPRGKLYEFSSC-SINKTIERYQKK 72 (210)
Q Consensus 40 da~valivfs~~gk~~~~~s~-~~~~IieRY~~~ 72 (210)
+...++-|..++|++.+|..| .+.+|+..|=.+
T Consensus 13 ~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 13 SSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred CCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCC
Confidence 344444444489999999888 999999998665
No 55
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=51.36 E-value=36 Score=24.69 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 156 EQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 156 ~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.++..++++...++++|..|+.++.
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 56
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.30 E-value=7.1 Score=32.22 Aligned_cols=20 Identities=35% Similarity=0.755 Sum_probs=16.2
Q ss_pred cceeeeeecCCCCccc--ccch
Q 028363 41 AEVALIIFSPRGKLYE--FSSC 60 (210)
Q Consensus 41 a~valivfs~~gk~~~--~~s~ 60 (210)
-|-|+-||||+|.++. |+..
T Consensus 4 ydraltvFSPDGhL~QVEYAqE 25 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQVEYAQE 25 (249)
T ss_pred cccceEEECCCCCEEeeHhHHH
Confidence 4678999999999985 7654
No 57
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=51.19 E-value=2.3e+02 Score=27.20 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 122 DELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLR 176 (210)
Q Consensus 122 ~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~ 176 (210)
.++..|+..|+..-.+++...+++. ..+.+...|..|+++...-...-..|.
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~r---ei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDR---EIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777666666654432211 134455666666665444333333333
No 58
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=50.77 E-value=4.3 Score=27.86 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=27.5
Q ss_pred ccccccccccchhhh---------hhhhhcccCcceeeeeecCCCC
Q 028363 17 RQVTFSKRRNGLLKK---------AFELSVLCDAEVALIIFSPRGK 53 (210)
Q Consensus 17 RqvTf~KRr~GL~KK---------A~ELsvLCda~valivfs~~gk 53 (210)
+-+-||+-|++|-.| +.|+.+-||.|+-|+..-|.|.
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 444568888777555 5799999999999999998886
No 59
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=50.61 E-value=56 Score=33.08 Aligned_cols=46 Identities=26% Similarity=0.318 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhhhccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 129 NQLERSLSRIRARKFRNLVFSQNQ-LFREQIEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 129 ~~Le~~L~~Ir~RK~~~~~~~~~~-ll~~~i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
..|+.-|.+.|+|- .+ =+..+|-.++++...+..++...+.+.+..
T Consensus 281 eMLeeQLq~lrars--------e~~tleseiiqlkqkl~dm~~erdtdr~kteeL 327 (1195)
T KOG4643|consen 281 EMLEEQLQKLRARS--------EGATLESEIIQLKQKLDDMRSERDTDRHKTEEL 327 (1195)
T ss_pred HHHHHHHHHHHhcc--------ccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34666677777666 43 345677778888888888888888887743
No 60
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=50.18 E-value=14 Score=30.20 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=36.9
Q ss_pred cchhhhh----hhhhcccCcceeeeeecCCC---CcccccchhhhhhHHhhhhc
Q 028363 26 NGLLKKA----FELSVLCDAEVALIIFSPRG---KLYEFSSCSINKTIERYQKK 72 (210)
Q Consensus 26 ~GL~KKA----~ELsvLCda~valivfs~~g---k~~~~~s~~~~~IieRY~~~ 72 (210)
.-|+.|. .|++|-+|-++.|++.+|+- ..-.|+...++.|+..|...
T Consensus 35 ~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~~ 88 (214)
T PF10491_consen 35 TRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKPV 88 (214)
T ss_pred HHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHHH
Confidence 4466664 79999999999999999873 34458887788888888764
No 61
>PRK10884 SH3 domain-containing protein; Provisional
Probab=49.53 E-value=1.1e+02 Score=25.14 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=10.9
Q ss_pred HHHHHHhHHhHHHHHHHHHHh
Q 028363 90 AKEETSNMMTKLEFLEVAKRK 110 (210)
Q Consensus 90 lk~e~~kL~~~ie~le~~~r~ 110 (210)
....+..++.+++.++..+..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544433
No 62
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=49.31 E-value=19 Score=26.44 Aligned_cols=27 Identities=37% Similarity=0.310 Sum_probs=21.5
Q ss_pred hhhhhcccCcceeeeeecCCCCcccccc
Q 028363 32 AFELSVLCDAEVALIIFSPRGKLYEFSS 59 (210)
Q Consensus 32 A~ELsvLCda~valivfs~~gk~~~~~s 59 (210)
-.+|-.|-|| +|+..||++|++.+|-.
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEeeec
Confidence 4577778887 46678999999999855
No 63
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=49.24 E-value=2.1e+02 Score=26.23 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=22.8
Q ss_pred ceeeeeecCCCCcccccchhhhhhHHhhhhc
Q 028363 42 EVALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (210)
Q Consensus 42 ~valivfs~~gk~~~~~s~~~~~IieRY~~~ 72 (210)
-+-+++|+++|++..|. ++.+||..|-.+
T Consensus 298 ~~Nm~~~d~~g~~~~~~--~~~~Il~~f~~~ 326 (439)
T PHA02592 298 SQNITVINENGKLKVYE--NAEDLIRDFVEI 326 (439)
T ss_pred eeeEEEEecCCeeeecC--CHHHHHHHHHHH
Confidence 36788899999988884 458888888664
No 64
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=48.98 E-value=47 Score=23.88 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
-|+..++.+-|+++...+.++|..|..++..
T Consensus 10 LqFvEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 10 LQFVEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999887663
No 65
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=48.01 E-value=1.5e+02 Score=24.05 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
...+.+.+..|..+...|..||..|+.-|-
T Consensus 110 V~~Y~~KL~eLE~kq~~L~rEN~eLKElcl 139 (195)
T PF10226_consen 110 VAQYQQKLKELEDKQEELIRENLELKELCL 139 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344555556666666667778888877654
No 66
>PRK13824 replication initiation protein RepC; Provisional
Probab=47.46 E-value=76 Score=28.77 Aligned_cols=95 Identities=19% Similarity=0.327 Sum_probs=56.4
Q ss_pred hhhcccCcceeeeee--cCCCCcccccch----------hhhhhHHhhhhccccccccccccccchHHHHHHHHhHHhHH
Q 028363 34 ELSVLCDAEVALIIF--SPRGKLYEFSSC----------SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKL 101 (210)
Q Consensus 34 ELsvLCda~valivf--s~~gk~~~~~s~----------~~~~IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~kL~~~i 101 (210)
-|+.|.+ ++||++ ||+||=|.+-.. +..-++.||....... +..+.-+.++..++.++
T Consensus 103 hla~Lve--aGLI~rrDSpNGKRyarr~~~G~i~~AfGfDLsPL~~R~~El~~~A--------~~~~ae~~~~r~lr~~i 172 (404)
T PRK13824 103 HLAALVE--AGLIIRRDSPNGKRYARKGRGGEIEEAFGFDLAPLLARAEEFEALA--------EQVAAERKALRRLRERL 172 (404)
T ss_pred HHHHHHH--CCCeEeecCCCCcccceeCCCCceeeeeccchHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 4556644 456666 589998765321 4666788886654432 22333355566667777
Q ss_pred HHHHHHHHhhcC----CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 102 EFLEVAKRKLLG----DGLEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 102 e~le~~~r~~~G----e~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
..+.+..+.+.. +.+.+ +...+...+...+..++.+.
T Consensus 173 t~~rRdi~~li~~a~~~~~~~----~w~~~~~~~~~i~~~l~R~~ 213 (404)
T PRK13824 173 TLCRRDIAKLIEAAIEEGVPG----DWEGVEQRFRAIVARLPRRA 213 (404)
T ss_pred HHHHHHHHHHHHHHHhccCCC----cHHHHHHHHHHHHHHcCCCC
Confidence 767666665442 22221 47777777777777777443
No 67
>PF14645 Chibby: Chibby family
Probab=47.11 E-value=31 Score=25.61 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 156 EQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 156 ~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.....++++.+.|+|||+.|+-+++
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777888888877765
No 68
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=46.70 E-value=1.1e+02 Score=21.93 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 153 LFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 153 ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
.+...|+.+.++...+..+...++.++
T Consensus 74 ~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 74 TIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544
No 69
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.65 E-value=1e+02 Score=28.61 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.+++..+.++++.+.+.++.||..|+.+++
T Consensus 92 lq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 92 LDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356666777888889999999999999985
No 70
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=46.16 E-value=2.9e+02 Score=28.37 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=31.5
Q ss_pred eeeeecCCCCcccccchhhhhhHHhhhhccccc---c---ccccccccchHHHHHHHHhHHhHHHHHHHHHH
Q 028363 44 ALIIFSPRGKLYEFSSCSINKTIERYQKKTKDI---G---INSKIVEDHSQHAKEETSNMMTKLEFLEVAKR 109 (210)
Q Consensus 44 alivfs~~gk~~~~~s~~~~~IieRY~~~~~~~---~---~~~~~~~~~~e~lk~e~~kL~~~ie~le~~~r 109 (210)
+.-+|.++|...-|+.|. |.-++... + -.....+..++.++.+..+++.++-.++...+
T Consensus 621 ~~~aytldg~~~~~~g~~-------~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~ 685 (1074)
T KOG0250|consen 621 VTKAYTLDGRQIFAGGPN-------YRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRR 685 (1074)
T ss_pred ceeeeccCccccccCCCC-------cceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677887655565553 22222211 1 11112345677777777777776666555443
No 71
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=45.45 E-value=23 Score=25.50 Aligned_cols=30 Identities=37% Similarity=0.336 Sum_probs=22.9
Q ss_pred hhhhhhhcccCcceeeeeecCCCCcccccch
Q 028363 30 KKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60 (210)
Q Consensus 30 KKA~ELsvLCda~valivfs~~gk~~~~~s~ 60 (210)
-|..||--+-||- |.=.|||+||+.+|-++
T Consensus 3 ekLdeLlqi~Gv~-AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 3 EKLDELLQIKGVM-AAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hhHHHHhCcccee-EeceeCCCCceEEeeCC
Confidence 3566777777764 45579999999999775
No 72
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=44.43 E-value=92 Score=28.48 Aligned_cols=78 Identities=8% Similarity=0.108 Sum_probs=39.9
Q ss_pred Ccccccch------hhhh----hHHhhhhccccccccccccccchHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHH
Q 028363 53 KLYEFSSC------SINK----TIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTID 122 (210)
Q Consensus 53 k~~~~~s~------~~~~----IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~ 122 (210)
..++||+| .+.. .+.+|+-+....... . -.....+..|..+|+.|+.... ..+.+ + -+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----l~fe~pi~ele~ki~el~~~~~-~~~~~---~-~~ 105 (431)
T PLN03230 38 LEHEYPWPEKLPQGELTTGALKILNRFKPLKNKPKPV--T-----LPFEKPIVDLENRIDEVRELAN-KTGVD---F-SA 105 (431)
T ss_pred CCCCCCCcccCCCCcccccHHHHHHhcCCCCCCCCCC--c-----cchhhHHHHHHHHHHHHHhhhh-ccccc---H-HH
Confidence 34777776 2333 677776655433211 1 1122345556666665553211 11222 2 25
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 028363 123 ELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 123 EL~~LE~~Le~~L~~Ir~RK 142 (210)
|+..|+..++.....|-..-
T Consensus 106 ei~~l~~~~~~~~~~i~~~L 125 (431)
T PLN03230 106 QIAELEERYDQVRRELYSRL 125 (431)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 77778777777666655543
No 73
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.31 E-value=54 Score=21.68 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
..-+..++..++++...+..+|..|..++...
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556777888888888888888888877755
No 74
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=43.90 E-value=67 Score=27.61 Aligned_cols=60 Identities=18% Similarity=0.454 Sum_probs=39.5
Q ss_pred CCccccccccccch---------hhhhhhhhcccCcceeeeeecCCCCcc-------cccch-----hhhhhHHh-hhhc
Q 028363 15 TSRQVTFSKRRNGL---------LKKAFELSVLCDAEVALIIFSPRGKLY-------EFSSC-----SINKTIER-YQKK 72 (210)
Q Consensus 15 ~~RqvTf~KRr~GL---------~KKA~ELsvLCda~valivfs~~gk~~-------~~~s~-----~~~~IieR-Y~~~ 72 (210)
+.|-|.||+-|..| +-+.-.++|-||-|.-..+.-++|+-| .|... +.+.||.. -...
T Consensus 180 ~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfCHl~t~~Cfg~~~~gL~~LEs~l~~Rk~~a 259 (359)
T KOG4311|consen 180 SGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFCHLGTETCFGTSVFGLYSLESILSKRKETA 259 (359)
T ss_pred cCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCcccccCcceeeeeechhhhhHHHHHHHhhhcC
Confidence 45667778777745 444568899999998877777887633 34332 67777554 4444
Q ss_pred cc
Q 028363 73 TK 74 (210)
Q Consensus 73 ~~ 74 (210)
|+
T Consensus 260 Pe 261 (359)
T KOG4311|consen 260 PE 261 (359)
T ss_pred Cc
Confidence 43
No 75
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=43.76 E-value=91 Score=22.46 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 118 PCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
|+|++|+..+-......-..+. .. ..++.+++..+.++...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~-~~--------~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIP-ER--------LELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777776544322111111 12 35666666677776666666665555544
No 76
>PHA01750 hypothetical protein
Probab=42.92 E-value=1e+02 Score=20.61 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 129 NQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 129 ~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
+.+.++.+.|-..- --=+..+|+.++.+..+++++-+.+.+++.
T Consensus 30 q~lkdAvkeIV~~E--------LdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 30 QALKDAVKEIVNSE--------LDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 34444444554444 444455666666666666666666666543
No 77
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=42.86 E-value=2.3e+02 Score=24.70 Aligned_cols=79 Identities=10% Similarity=0.208 Sum_probs=48.2
Q ss_pred HHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHH
Q 028363 90 AKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILI 169 (210)
Q Consensus 90 lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~ 169 (210)
++.+++.|+-+++.+......-... -++|..-+....+..-+.|+- . .+.+...|.........|.
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~k-----y~ediei~Kekn~~Lqk~lKL-n--------eE~ltkTi~qy~~QLn~L~ 69 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKK-----YLEDIEILKEKNDDLQKSLKL-N--------EETLTKTIFQYNGQLNVLK 69 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHHHhh-h--------HHHHHHHHHHHhhhHHHHH
Confidence 4566666666666555433221111 134555555555554444433 2 4677788888888899999
Q ss_pred HHHHHHHHHhccC
Q 028363 170 EENTKLREQCGMQ 182 (210)
Q Consensus 170 een~~L~~~~~~~ 182 (210)
-||++|..++...
T Consensus 70 aENt~L~SkLe~E 82 (305)
T PF14915_consen 70 AENTMLNSKLEKE 82 (305)
T ss_pred HHHHHHhHHHHHh
Confidence 9999998888643
No 78
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=42.74 E-value=1.6e+02 Score=23.01 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 153 LFREQIEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 153 ll~~~i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
-+..+..+|..++..|+++|..|..++..
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555667888888888888888876654
No 79
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=41.43 E-value=50 Score=24.25 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 154 FREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 154 l~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
+..+++.|++....+.+||..|+....
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe 46 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENE 46 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHH
Confidence 447899999999999999999987755
No 80
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=40.73 E-value=1.1e+02 Score=24.85 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
.+.-..+|..|+.-...|+++|..|+.-|.-.
T Consensus 50 lQ~hl~EIR~LKe~NqkLqedNqELRdLCCFL 81 (195)
T PF10226_consen 50 LQQHLNEIRGLKEVNQKLQEDNQELRDLCCFL 81 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 35555667777777888899999998887743
No 81
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=40.61 E-value=38 Score=29.51 Aligned_cols=25 Identities=48% Similarity=0.585 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 157 QIEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 157 ~i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
+++.|++|.+.|++||..|+.....
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~ 185 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQ 185 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999988663
No 82
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.08 E-value=1.8e+02 Score=22.86 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 116 LEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 116 L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
...+++++...+-+.+.........-. ++++-+..++..|+++...|+.+|..|..+..
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~------~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQ------KENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999988888876533332221 12556777778888888888888877766544
No 83
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.02 E-value=3e+02 Score=28.84 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 119 CTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
.++++|..--..++..+..++... +-+-...+-+..+|..|+.++..+..+...+...+
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~--e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l 880 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKI--ELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNL 880 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477877777777777777664433 00111134445666666666655555555554433
No 84
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=39.89 E-value=2.8e+02 Score=24.85 Aligned_cols=121 Identities=11% Similarity=0.067 Sum_probs=61.2
Q ss_pred hhhhHHhhhhccccccccccccccchHHHHHHHHhHHhHHHHHHHHHHhhcC-C---CC---CCCCHHHHHHHHHHHHHH
Q 028363 62 INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLG-D---GL---EPCTIDELQQLENQLERS 134 (210)
Q Consensus 62 ~~~IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~kL~~~ie~le~~~r~~~G-e---~L---~~Ls~~EL~~LE~~Le~~ 134 (210)
+..+++-|....-...... .......+..++..++.+++..+..+..+.- . ++ .++....|.+|..++...
T Consensus 150 ~n~~~~~y~~~~~~~~~~~--~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~ 227 (444)
T TIGR03017 150 ANAFAQAYIDTNIELKVEP--AQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAA 227 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHH
Confidence 4555667776544322111 1233567778888888888877776654421 1 11 123345666666665554
Q ss_pred HHHHHHhhhhccccch----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 028363 135 LSRIRARKFRNLVFSQ----NQL-FREQIEKLKEKEKILIEENTKLREQCGMQPR 184 (210)
Q Consensus 135 L~~Ir~RK~~~~~~~~----~~l-l~~~i~~l~~k~~~l~een~~L~~~~~~~~~ 184 (210)
-.....-..+.-.-.. ..+ -...|..|+.+...++.+-..|....+..++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP 282 (444)
T TIGR03017 228 QAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHP 282 (444)
T ss_pred HHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3322111100000000 000 1123567777777777777777777776553
No 85
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=39.21 E-value=80 Score=22.67 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
......+++.|......+..+|..|...+...
T Consensus 75 ~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 75 APYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666778899999999999999999887643
No 86
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=38.42 E-value=3.3e+02 Score=25.28 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 101 LEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 101 ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
....+.++|+++.. .-|+-|+..+...+.+.+..+.+|. ++ +..+|+.|..|...|.+.-+.+-.-+
T Consensus 405 fR~Vk~~qRkl~e~---~nsl~d~aK~~~~myd~~~~l~~~q--------~~-le~qI~~Le~kl~~l~~~l~s~~~~~ 471 (489)
T KOG3684|consen 405 FRSVKWEQRKLSEQ---ANSLVDLAKTQNDMYDLLQELHSRQ--------EE-LEKQIDTLESKLEALTASLSSLPGLL 471 (489)
T ss_pred HHHHHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 34455556666533 3456799999999999999999998 54 55788888888888887766554433
No 87
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.36 E-value=1.9e+02 Score=22.86 Aligned_cols=31 Identities=32% Similarity=0.325 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
.....++|+.++++....+.+...|+++++.
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888764
No 88
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=38.01 E-value=1.3e+02 Score=20.34 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHH
Q 028363 118 PCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFR 155 (210)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~ 155 (210)
..++.++..++..|........... +.+++....-|.
T Consensus 18 ~~s~~~i~~~~~~L~~~i~~~~~eL-r~~V~~nY~~fI 54 (87)
T PF08700_consen 18 NSSIKEIRQLENKLRQEIEEKDEEL-RKLVYENYRDFI 54 (87)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHH
Confidence 4445555555555555544444443 444444444333
No 89
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=37.80 E-value=39 Score=20.68 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
+..+...|.+|.++...|..||..|+..+
T Consensus 16 Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 16 NSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------HHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 56777889999999999999999998865
No 90
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=37.66 E-value=21 Score=27.29 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=19.7
Q ss_pred hhcccCcceeeeeecCCCCccccc
Q 028363 35 LSVLCDAEVALIIFSPRGKLYEFS 58 (210)
Q Consensus 35 LsvLCda~valivfs~~gk~~~~~ 58 (210)
+.++|||||-++|-+.+.+-..||
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred HHHhhccceeeeeecccCccccCC
Confidence 678999999999999887755554
No 91
>PHA03162 hypothetical protein; Provisional
Probab=37.20 E-value=1.9e+02 Score=22.06 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHhHHhHHHHHHHHHHhhcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 84 EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDG----LEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 84 ~~~~e~lk~e~~kL~~~ie~le~~~r~~~Ge~----L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
+..++.+..++.+|+-++..|...++.-.|.+ -..|+..+=..+-.....+|...-.+|
T Consensus 12 ~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kK 74 (135)
T PHA03162 12 QPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKK 74 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999998887655554 345899888888888888887777777
No 92
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=36.90 E-value=1.2e+02 Score=19.69 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 120 TIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 120 s~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.++.-..|+..++...+...+|. .+.+....|+++|..|+.-+.
T Consensus 14 ~~~~W~~L~~~l~rY~~vL~~R~-----------------~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 14 KIRLWDALENFLKRYNKVLLDRA-----------------ALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777666666666 455556788899999987654
No 93
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.65 E-value=3.5e+02 Score=25.12 Aligned_cols=72 Identities=15% Similarity=0.284 Sum_probs=36.8
Q ss_pred hHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHH
Q 028363 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEK 166 (210)
Q Consensus 87 ~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~ 166 (210)
+..++.++..+..+++.+..++..+. .....+..+++.++...+. -+..+.+.|+....
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~---------~r~~~id~~i~~av~~~~~------------~~~~~~~ql~~~~~ 126 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQ---------KREQSIDQQIQQAVQSETQ------------ELTKEIEQLKSERQ 126 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhhH------------HHHHHHHHHHHHHH
Confidence 34455555555555555555443321 1223345555555555443 33445556666555
Q ss_pred HHHHHHHHHHHHh
Q 028363 167 ILIEENTKLREQC 179 (210)
Q Consensus 167 ~l~een~~L~~~~ 179 (210)
.++..-..|..++
T Consensus 127 ~~~~~l~~l~~~l 139 (472)
T TIGR03752 127 QLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHH
Confidence 5655555666655
No 94
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=36.53 E-value=28 Score=31.19 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=30.4
Q ss_pred hhhhcccCcce--eeeeecCCCCcccccch---hhhhhHHhhhhcccc
Q 028363 33 FELSVLCDAEV--ALIIFSPRGKLYEFSSC---SINKTIERYQKKTKD 75 (210)
Q Consensus 33 ~ELsvLCda~v--alivfs~~gk~~~~~s~---~~~~IieRY~~~~~~ 75 (210)
.=|||+||-+| |||--..+|=-|.-|.. ++++++.-|+..+-.
T Consensus 367 yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~SLe 414 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTSLE 414 (464)
T ss_pred eEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhhHH
Confidence 56999999888 77665566644433332 789999999887643
No 95
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.73 E-value=4.9e+02 Score=26.54 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=33.9
Q ss_pred hHHHHHHHHhHHhHHHHHHHHHHhh------cCCCCCCCCHHHHHHHHHH---HHHHHHHHHH
Q 028363 87 SQHAKEETSNMMTKLEFLEVAKRKL------LGDGLEPCTIDELQQLENQ---LERSLSRIRA 140 (210)
Q Consensus 87 ~e~lk~e~~kL~~~ie~le~~~r~~------~Ge~L~~Ls~~EL~~LE~~---Le~~L~~Ir~ 140 (210)
.+.++.++..++.+++.|+..+.-+ .|.+.-..|.-++.+||.+ |-.+|-+.|+
T Consensus 327 aesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777766655332 2556656666677777764 5566655554
No 96
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.53 E-value=3.6e+02 Score=24.94 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKL 175 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L 175 (210)
.+.+...+..+++....+.|+|+.|
T Consensus 384 ~~q~q~k~~k~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKEEREENKKL 408 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 97
>PLN02939 transferase, transferring glycosyl groups
Probab=35.43 E-value=1.4e+02 Score=30.28 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 028363 150 QNQLFREQIEKLKEKEKILIEENTK 174 (210)
Q Consensus 150 ~~~ll~~~i~~l~~k~~~l~een~~ 174 (210)
+.+++.+.++.++.....|.+|+..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 377 YIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4578888888888888888877754
No 98
>smart00338 BRLZ basic region leucin zipper.
Probab=35.35 E-value=1.2e+02 Score=19.46 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
.+.|..+.+.|+.++..|..++..|...+
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666777777777666554
No 99
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=35.25 E-value=68 Score=24.80 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 128 ENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 128 E~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~ 178 (210)
+..|-..+..=+..| .-+..+|+.|+.|...|.+--..|+..
T Consensus 94 s~~iY~d~~aWk~hr---------~~ID~eIe~Lq~Ki~~LKeiR~hLk~~ 135 (145)
T PF12548_consen 94 SNVIYQDPKAWKDHR---------LHIDHEIETLQDKIKNLKEIRGHLKKK 135 (145)
T ss_pred cHhhhcCHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555 346789999999999999988888765
No 100
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=34.66 E-value=1.1e+02 Score=23.35 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.+-|..+-..|.+.+..|.+||..++.++.
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677777777777777766654
No 101
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=34.44 E-value=27 Score=27.27 Aligned_cols=34 Identities=21% Similarity=0.522 Sum_probs=23.3
Q ss_pred cccCcceeeeeecCCCCccc-ccch-------hhhhhHHhhh
Q 028363 37 VLCDAEVALIIFSPRGKLYE-FSSC-------SINKTIERYQ 70 (210)
Q Consensus 37 vLCda~valivfs~~gk~~~-~~s~-------~~~~IieRY~ 70 (210)
.-|++.|-+++|||.-+.|. |... .+..|++.++
T Consensus 109 p~c~iKvL~LlYs~kk~~flG~IP~DQ~~Fv~~lr~Vi~~~k 150 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAFLGFIPNDQEGFVNRLRQVIQIQK 150 (152)
T ss_dssp SSSS-SEEEEEEETTTTEEEEEEESTHHHHHHHHHHHCHHHC
T ss_pred CCCceEEEEEEEcCCCceEEEEcCCCHHHHHHHHHHHHHHhh
Confidence 57999999999999988765 5432 3555555543
No 102
>PLN03194 putative disease resistance protein; Provisional
Probab=34.25 E-value=1.5e+02 Score=24.03 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=21.0
Q ss_pred cCcceeeeeecCCCCcccccchhhhhhHHh
Q 028363 39 CDAEVALIIFSPRGKLYEFSSCSINKTIER 68 (210)
Q Consensus 39 Cda~valivfs~~gk~~~~~s~~~~~IieR 68 (210)
=.+.++|+||||+=--..||-..+..|++.
T Consensus 79 eeSri~IvVfS~~Ya~S~WCLdEL~~I~e~ 108 (187)
T PLN03194 79 RNCKVGVAVFSPRYCESYFCLHELALIMES 108 (187)
T ss_pred HhCeEEEEEECCCcccchhHHHHHHHHHHc
Confidence 467899999999844444555566667664
No 103
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.70 E-value=4.2e+02 Score=25.14 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 154 FREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 154 l~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
+..+..+++.++..|+++...|..+.
T Consensus 211 L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 211 LKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555665555555444
No 104
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=33.63 E-value=1.9e+02 Score=21.14 Aligned_cols=28 Identities=43% Similarity=0.497 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 152 QLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 152 ~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
+-...+++.++++...+.++.+.|++++
T Consensus 90 ~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 90 QELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555566666666666666665543
No 105
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=32.77 E-value=19 Score=30.50 Aligned_cols=50 Identities=4% Similarity=0.078 Sum_probs=23.8
Q ss_pred chhhhhhHHhhhhccccccccccccccchHHHHHHHHhHHhHHHHHHHHH
Q 028363 59 SCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAK 108 (210)
Q Consensus 59 s~~~~~IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~kL~~~ie~le~~~ 108 (210)
++++++-+.+..+........-...+..++.++.|+.+|+.++|.+.-.+
T Consensus 35 ~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l 84 (263)
T PRK10803 35 SGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQL 84 (263)
T ss_pred CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455555555444332211001123456666677777766666555433
No 106
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=32.29 E-value=32 Score=19.48 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=14.3
Q ss_pred ceeeeeecCCCCcccccch
Q 028363 42 EVALIIFSPRGKLYEFSSC 60 (210)
Q Consensus 42 ~valivfs~~gk~~~~~s~ 60 (210)
.-.-..|||+|+-..|+|.
T Consensus 10 ~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEE
T ss_pred cccCEEEecCCCEEEEEec
Confidence 4556789999999888874
No 107
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.90 E-value=1.2e+02 Score=22.06 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=8.2
Q ss_pred CCCHHHHHHHHHHH
Q 028363 118 PCTIDELQQLENQL 131 (210)
Q Consensus 118 ~Ls~~EL~~LE~~L 131 (210)
+++++|+..+-...
T Consensus 56 G~sl~eI~~~l~~~ 69 (116)
T cd04769 56 GFTLAELKAIFAGH 69 (116)
T ss_pred CCCHHHHHHHHhcc
Confidence 46666666665443
No 108
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=31.78 E-value=1.8e+02 Score=20.73 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 117 EPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 117 ~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
-|+++.|+..+-..... ... ..++..+++.+.++...++..-..|...+
T Consensus 57 ~G~sl~~i~~l~~~~~~------~~~--------~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 57 LGFPLEEIKEILDADND------DEL--------RKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred cCCCHHHHHHHHhcCCH------HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777776655442 333 45666666666666666665555555443
No 109
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=31.37 E-value=1.2e+02 Score=20.37 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
..-+..++..++++...++.+|..|+.++...
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888899999998887743
No 110
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=31.04 E-value=3e+02 Score=24.21 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=51.6
Q ss_pred cccccccchhhhhhhhhcccCcceeeeeecCCCCcccccc---hhhhhhHHhhhhccccccccccccccchHHHHHHHHh
Q 028363 20 TFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS---CSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSN 96 (210)
Q Consensus 20 Tf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s---~~~~~IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~k 96 (210)
++..|..+|-++-.|+--.|+ ..|++..+|. .++..++..+...... ...++..+++.+..
T Consensus 34 qLqer~q~LKkk~~el~~~~~---------~~~d~~~~~~~~~~~La~lL~~sre~Nk~-------L~~Ev~~Lrqkl~E 97 (319)
T PF09789_consen 34 QLQERYQALKKKYRELIQEAA---------GFGDPSIPPEKENKNLAQLLSESREQNKK-------LKEEVEELRQKLNE 97 (319)
T ss_pred HHHHHHHHHHHHHHHhhhhhc---------ccCCccCCcccchhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 345566777777776653221 2333333332 2566666666542221 13445666677777
Q ss_pred HHhHHHHHHHHHHhh--cCCCCCC-CCHHHHHHHHHHHHHHHHHHH
Q 028363 97 MMTKLEFLEVAKRKL--LGDGLEP-CTIDELQQLENQLERSLSRIR 139 (210)
Q Consensus 97 L~~~ie~le~~~r~~--~Ge~L~~-Ls~~EL~~LE~~Le~~L~~Ir 139 (210)
++..+..|...+... .+..++. -.+.|=..|-.+|+..-..+.
T Consensus 98 ~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~ 143 (319)
T PF09789_consen 98 AQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIE 143 (319)
T ss_pred HhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHH
Confidence 777776666655332 1122221 112555555555555444433
No 111
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=30.70 E-value=3.3e+02 Score=23.19 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
++.+..+|...++-+..+.++...|+..++
T Consensus 188 N~~m~kei~~~re~i~el~e~I~~L~~eV~ 217 (258)
T PF15397_consen 188 NQVMQKEIVQFREEIDELEEEIPQLRAEVE 217 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555544
No 112
>PTZ00370 STEVOR; Provisional
Probab=30.67 E-value=1.2e+02 Score=26.28 Aligned_cols=42 Identities=21% Similarity=0.468 Sum_probs=27.2
Q ss_pred eeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccc-hhhhhhHHhhhh
Q 028363 8 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS-CSINKTIERYQK 71 (210)
Q Consensus 8 ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s-~~~~~IieRY~~ 71 (210)
+..|.|.+.|. |-+-| .||..|. |+| .|-+ |.|++|++.|..
T Consensus 26 ~~li~n~t~~~-t~~sR------------~L~Ecel----~~p-----~YdNDpemK~i~d~~n~ 68 (296)
T PTZ00370 26 VSLIQNNTQRT-TIKSR------------LLAQTQN----HNP-----HYHNDPELKEIIDKMNE 68 (296)
T ss_pred cccccCCCccc-cccee------------ehhhhhc----CCC-----CCCCcHHHHHHHHHHhH
Confidence 45677777765 32222 5787776 555 2444 799999999865
No 113
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=29.95 E-value=1.7e+02 Score=21.82 Aligned_cols=53 Identities=8% Similarity=0.254 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 118 PCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
|+|++|+..+-...+..-... ... ..++..+++.+..+...|..--..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~--------~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMV--------RRLIEQRLAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778777654332210000 111 24555556666666665555444444443
No 114
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.76 E-value=5.9e+02 Score=25.59 Aligned_cols=79 Identities=24% Similarity=0.171 Sum_probs=36.1
Q ss_pred HHHHHHHhHHhHHHHHHHHHHhhc--CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHH
Q 028363 89 HAKEETSNMMTKLEFLEVAKRKLL--GDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEK 166 (210)
Q Consensus 89 ~lk~e~~kL~~~ie~le~~~r~~~--Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~ 166 (210)
.+..+..+|-++++.+-+.+-.-. .+..+.+..+.+.++-......-.-||.- ..+|+.+++++.
T Consensus 615 ~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~l-------------D~~~e~lkQ~~~ 681 (970)
T KOG0946|consen 615 ALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIREL-------------DYQIENLKQMEK 681 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHH
Confidence 455566666666655544332211 12334455555555554444433333322 234444555444
Q ss_pred HHHHHHHHHHHHhc
Q 028363 167 ILIEENTKLREQCG 180 (210)
Q Consensus 167 ~l~een~~L~~~~~ 180 (210)
.+.-||..|..++.
T Consensus 682 ~l~~e~eeL~~~vq 695 (970)
T KOG0946|consen 682 ELQVENEELEEEVQ 695 (970)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 115
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=29.63 E-value=3.3e+02 Score=22.63 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=4.8
Q ss_pred ccccchhhhh
Q 028363 55 YEFSSCSINK 64 (210)
Q Consensus 55 ~~~~s~~~~~ 64 (210)
.-||..++..
T Consensus 11 ~~~C~~C~~~ 20 (302)
T PF10186_consen 11 RFYCANCVNN 20 (302)
T ss_pred CeECHHHHHH
Confidence 3355554444
No 116
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.56 E-value=4.1e+02 Score=23.69 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=38.0
Q ss_pred hHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHH
Q 028363 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEK 166 (210)
Q Consensus 87 ~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~ 166 (210)
++.-+.|.+.|+-+++.|...+-+..+ + +-....--++||..+.+.+++. +-+.-+.+.+++.-+
T Consensus 94 ~~e~q~e~~qL~~qnqkL~nqL~~~~~--v----f~k~k~~~q~LE~li~~~~EEn---------~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 94 VEERQQESEQLQSQNQKLKNQLFHVRE--V----FMKTKGDIQHLEGLIRHLREEN---------QCLQLQLDALQQECG 158 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH--H----HHHhcchHHHHHHHHHHHHHHH---------HHHHHhHHHHHHHHh
Confidence 444555566666666655555433221 0 0011112344555555555554 444555666666555
Q ss_pred HHHHHHHHHHHHhc
Q 028363 167 ILIEENTKLREQCG 180 (210)
Q Consensus 167 ~l~een~~L~~~~~ 180 (210)
.-+||+..|-.++.
T Consensus 159 Ekeeesq~LnrELa 172 (401)
T PF06785_consen 159 EKEEESQTLNRELA 172 (401)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555544433
No 117
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=29.33 E-value=52 Score=21.58 Aligned_cols=30 Identities=17% Similarity=0.520 Sum_probs=21.1
Q ss_pred cCcceeeeeecCCCCcccccch-hhhhhHHhh
Q 028363 39 CDAEVALIIFSPRGKLYEFSSC-SINKTIERY 69 (210)
Q Consensus 39 Cda~valivfs~~gk~~~~~s~-~~~~IieRY 69 (210)
|+.--.++|+ |.|..|...+| .+.+|++.+
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEEL 77 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHhC
Confidence 6655555555 67788887776 788888753
No 118
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=29.29 E-value=4.4e+02 Score=24.02 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=39.5
Q ss_pred hhhhHHhhhhccccccccccccccchHHHHHHHHhHHhHHHHHHHHHHhhcCCC------CCCCCHHHHHHHHHHHHHH
Q 028363 62 INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDG------LEPCTIDELQQLENQLERS 134 (210)
Q Consensus 62 ~~~IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~kL~~~ie~le~~~r~~~Ge~------L~~Ls~~EL~~LE~~Le~~ 134 (210)
++.+++-|.......... ....-.+++..++..++.+++..+..++.+.-+. -.+.....+.++..++...
T Consensus 140 ~n~l~~~yi~~~~~~~~~--~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 216 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQ--DSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAA 216 (498)
T ss_pred HHHHHHHHHHhhcccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHH
Confidence 555666687755432111 1123456778888888888888887776553211 1122344555555554443
No 119
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=29.16 E-value=1.1e+02 Score=24.29 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 028363 124 LQQLENQLERSLSR 137 (210)
Q Consensus 124 L~~LE~~Le~~L~~ 137 (210)
|.++|..+..++.+
T Consensus 2 LeD~EsklN~AIER 15 (166)
T PF04880_consen 2 LEDFESKLNQAIER 15 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666555543
No 120
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=28.98 E-value=94 Score=22.82 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=20.3
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 144 RNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 144 ~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.||+++| +.+..++..+..+.+.+.+++..|+..+.
T Consensus 69 eYLl~~q-~~L~~~~~~l~~~~~~~~~~~~~l~~~~~ 104 (118)
T PF13815_consen 69 EYLLHCQ-EYLSSQLEQLEERLQELQQEIEKLKQKLK 104 (118)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444442 23445566666666666666666666554
No 121
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.92 E-value=3.3e+02 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 028363 122 DELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 122 ~EL~~LE~~Le~~L~~Ir~RK 142 (210)
.++..|+..|+..=.+|++|+
T Consensus 80 ~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 80 AEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366667777777777777776
No 122
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=28.86 E-value=1.6e+02 Score=18.62 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=6.1
Q ss_pred CCCHHHHHHHH
Q 028363 118 PCTIDELQQLE 128 (210)
Q Consensus 118 ~Ls~~EL~~LE 128 (210)
|+|++|+.++-
T Consensus 14 GfsL~eI~~~l 24 (65)
T PF09278_consen 14 GFSLEEIRELL 24 (65)
T ss_dssp T--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 46677777665
No 123
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=28.55 E-value=74 Score=19.90 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=14.0
Q ss_pred CCCCCCHHHHHHHHH----HHHHHHHHHHHh
Q 028363 115 GLEPCTIDELQQLEN----QLERSLSRIRAR 141 (210)
Q Consensus 115 ~L~~Ls~~EL~~LE~----~Le~~L~~Ir~R 141 (210)
.|..+|++||++.-. .++.-+..+|.|
T Consensus 4 fLk~ls~~eL~~rl~~LD~~ME~Eieelr~R 34 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASLDPEMEQEIEELRQR 34 (49)
T ss_dssp GGGGS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456778888776433 334444444443
No 124
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=28.54 E-value=1.4e+02 Score=26.39 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=25.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHH
Q 028363 113 GDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKIL 168 (210)
Q Consensus 113 Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l 168 (210)
...|++.|++|+-.|.+. ++-|..++++|+.++..|
T Consensus 23 ~~~~~~~~~~e~~aLr~E--------------------N~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 23 NHELEGVSIDENFALRME--------------------NHSLKKENNDLKIEVERL 58 (420)
T ss_pred cccccccchhhhhhHHHH--------------------hHHHHHHHHHHHHHHHHH
Confidence 456888999988777543 455566677777777666
No 125
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=28.37 E-value=2.1e+02 Score=28.23 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=45.9
Q ss_pred eeeeeecCCCCcccccch-----hhhhhHHhhhhccccccccccccccchHHHHHHHHhHHhHHHHHHHHHHhhcCCCCC
Q 028363 43 VALIIFSPRGKLYEFSSC-----SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLE 117 (210)
Q Consensus 43 valivfs~~gk~~~~~s~-----~~~~IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~ 117 (210)
+.|+.---.||-++|||| +++.=.-+|.+.-.......+. ..-.....+..|..+|+.++..-. ..|-+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ldfEkpi~ele~ki~el~~~~~-~~~~~-- 123 (762)
T PLN03229 50 LAVVAKIRKGKKHEYPWPADPDPNVKGGVLSYLSHFKPLKEKPKP---VTLDFEKPLVDLEKKIVDVRKMAN-ETGLD-- 123 (762)
T ss_pred eEEEeeeccccccCCCCCCCCCCCcccchhhHhhccCCCCCCCCC---CCcchhhHHHHHHHHHHHHHhhhh-ccccc--
Confidence 445444567888888886 3433333343332222111111 111123345566666666553211 11222
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 118 PCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
+ -+|+..|+..+......|-.+-
T Consensus 124 -~-~~ei~~Le~k~~~~~~~iy~~L 146 (762)
T PLN03229 124 -F-SDQIISLESKYQQALKDLYTHL 146 (762)
T ss_pred -H-HHHHHHHHHHHHHHHHHHHccC
Confidence 2 2578888888888777766654
No 126
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=28.35 E-value=4.1e+02 Score=23.35 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCGMQP 183 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~~~~ 183 (210)
+.-+..+++.|+++...++.++..|+.++....
T Consensus 81 Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 81 NKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 467788999999999999999999999887543
No 127
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=28.35 E-value=92 Score=23.25 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Q 028363 157 QIEKLKEKEKILIEENTKLREQCGMQP 183 (210)
Q Consensus 157 ~i~~l~~k~~~l~een~~L~~~~~~~~ 183 (210)
.+++|..+...|+-||..|++++....
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 468889999999999999999998554
No 128
>PHA02109 hypothetical protein
Probab=28.34 E-value=2.4e+02 Score=22.69 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=17.0
Q ss_pred HhhcCCCCCCCC--HHHHHHHHHHHHH
Q 028363 109 RKLLGDGLEPCT--IDELQQLENQLER 133 (210)
Q Consensus 109 r~~~Ge~L~~Ls--~~EL~~LE~~Le~ 133 (210)
+...|+.|++|+ ++|+..|+..|+.
T Consensus 178 ~~~t~~~L~~~~~~L~~I~~L~~ki~~ 204 (233)
T PHA02109 178 RSHTGENLEGLTDKLKQISELTIKLEA 204 (233)
T ss_pred hccchhhhhhhhHHHHhhHHHHHHHHH
Confidence 566788888877 5566666665553
No 129
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=28.31 E-value=1.8e+02 Score=21.50 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 152 QLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 152 ~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
+++..+++.+.++...|++.-..|....
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02047 82 ALLDEHISHVRARIIKLQALIEQLVDLR 109 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777666666555555443
No 130
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=28.30 E-value=53 Score=22.69 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=23.3
Q ss_pred ceeeeeecCCC--Ccccccch-hhhhhHHhhhhc
Q 028363 42 EVALIIFSPRG--KLYEFSSC-SINKTIERYQKK 72 (210)
Q Consensus 42 ~valivfs~~g--k~~~~~s~-~~~~IieRY~~~ 72 (210)
.+-++|++.+| ++|.++.+ ....++.+|...
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~Tp 41 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCTP 41 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccCc
Confidence 46688999887 56666554 888899999763
No 131
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=27.65 E-value=2.4e+02 Score=24.16 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCCCCCCH--HHHHHHHH-HHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 114 DGLEPCTI--DELQQLEN-QLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 114 e~L~~Ls~--~EL~~LE~-~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~ 178 (210)
+.|..+.+ +|+..+|+ .+-+....-+.|+ +..+.|..|++++..|.-+|..|-..
T Consensus 192 ~pispid~e~qe~~kleRkrlrnreaa~Kcr~----------rkLdrisrLEdkv~~lk~~n~~L~~~ 249 (279)
T KOG0837|consen 192 EPISPIDMEDQEKIKLERKRLRNREAASKCRK----------RKLDRISRLEDKVKTLKIYNRDLASE 249 (279)
T ss_pred CCCCcccchhHHHHHHHHHHhhhHHHHHHHHH----------HHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence 33444333 45556655 3444444444444 55677888888887776666655443
No 132
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=27.63 E-value=1.2e+02 Score=20.74 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=26.6
Q ss_pred hHHhhhhccccccccccccccchHHHHHHHHhHHhHHHHHHHH
Q 028363 65 TIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVA 107 (210)
Q Consensus 65 IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~kL~~~ie~le~~ 107 (210)
++-.|.+.............+.++.+....++|+..++.||+-
T Consensus 22 l~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T TIGR02976 22 LILHYRSKRKTAASLSTDDQALLQELYAKADRLEERIDTLERI 64 (75)
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556765444333222222345677788889999999888854
No 133
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=27.28 E-value=1e+02 Score=26.35 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhccCC
Q 028363 166 KILIEENTKLREQCGMQP 183 (210)
Q Consensus 166 ~~l~een~~L~~~~~~~~ 183 (210)
..+++||..|++.++...
T Consensus 94 ~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 94 QNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 348899999999988654
No 134
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=27.27 E-value=1.1e+02 Score=25.80 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
+++|..+-+.|+.+-+.|.-+|..|...++
T Consensus 106 n~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 106 NEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344555555555555555555555555554
No 135
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=27.00 E-value=6e+02 Score=25.09 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 152 QLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 152 ~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.=+.+.|..|.+|+..+-.|.-.|+.++.
T Consensus 405 ~e~~QRva~lEkKvqa~~kERDalr~e~k 433 (961)
T KOG4673|consen 405 EEYHQRVATLEKKVQALTKERDALRREQK 433 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44556666666666665555555544433
No 136
>PHA03155 hypothetical protein; Provisional
Probab=26.67 E-value=1.1e+02 Score=22.77 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 158 IEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 158 i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
+++|..+...|+-||..|++++...
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~ 34 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQH 34 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5788888999999999999999755
No 137
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=26.56 E-value=2.6e+02 Score=20.41 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 152 QLFREQIEKLKEKEKILIEENTKLRE 177 (210)
Q Consensus 152 ~ll~~~i~~l~~k~~~l~een~~L~~ 177 (210)
+++.+++..+.++...|.+--..|..
T Consensus 83 ~~l~~~~~~l~~~~~~l~~~~~~L~~ 108 (118)
T cd04776 83 EKIEKRRAELEQQRRDIDAALAELDA 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444444433
No 138
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=26.41 E-value=51 Score=30.31 Aligned_cols=63 Identities=27% Similarity=0.255 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhccccch----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 117 EPCTIDELQQLENQLERSLSRIRARKFRNLVFSQ----------------NQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 117 ~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~----------------~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
++.++.+.--|.+.=|..|++||.+. +|..--| ...+..+-..|++|+..|+.+|..|..++.
T Consensus 232 EG~slPs~lPLTKaEEriLKrvRRKI-rNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~ 310 (472)
T KOG0709|consen 232 EGYSLPSKLPLTKAEERILKRVRRKI-RNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLK 310 (472)
T ss_pred ccCcCcccCCchHHHHHHHHHHHHHH-HhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHH
Confidence 34556666667777778888887654 3221111 122333445566666666666666655554
No 139
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=26.33 E-value=2.2e+02 Score=19.63 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 028363 159 EKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 159 ~~l~~k~~~l~een~~L~~~~~~ 181 (210)
+.-+..-..|..||..|..-++.
T Consensus 40 e~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 40 EEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556677788888777763
No 140
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=26.16 E-value=5.7e+02 Score=24.28 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=14.0
Q ss_pred hhhhhhcccCcceeeeeecC-CC------Ccccccch
Q 028363 31 KAFELSVLCDAEVALIIFSP-RG------KLYEFSSC 60 (210)
Q Consensus 31 KA~ELsvLCda~valivfs~-~g------k~~~~~s~ 60 (210)
+|+.|--.- .+-=..||.. .| .||.|..|
T Consensus 78 ~ayyLPk~~-~e~YqfcYv~~~g~V~G~S~pFqf~~~ 113 (546)
T PF07888_consen 78 QAYYLPKDD-DEFYQFCYVDQKGEVRGASTPFQFRAP 113 (546)
T ss_pred CcccCCCCC-CCeEEEEEECCCccEEEecCCcccCCC
Confidence 355555432 2333334443 22 37777665
No 141
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=26.14 E-value=42 Score=28.73 Aligned_cols=32 Identities=31% Similarity=0.600 Sum_probs=23.9
Q ss_pred ccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccch
Q 028363 19 VTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60 (210)
Q Consensus 19 vTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~ 60 (210)
+||.+|. ||+ +--++.++++.| .|+.|.|+|+
T Consensus 210 ~tl~~~~-GLL-------lPG~p~~Gv~~~--~~k~y~F~s~ 241 (281)
T PF12018_consen 210 WTLAERD-GLL-------LPGNPSIGVLKY--KDKYYAFSSR 241 (281)
T ss_pred EEEeccC-cee-------ecCCCccceeEE--cCEEEEeCCH
Confidence 4666664 654 556678888888 7799999997
No 142
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.05 E-value=2.3e+02 Score=19.63 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 156 EQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 156 ~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.+|+.+.++...+..+-..+...+.
T Consensus 76 ~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 76 KEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555443
No 143
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=25.75 E-value=1.7e+02 Score=20.39 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
...+..+++.+++....|.+||..|+-+...
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677999999999999999999877663
No 144
>PHA03162 hypothetical protein; Provisional
Probab=25.65 E-value=1.1e+02 Score=23.30 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 157 QIEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 157 ~i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
.+++|..+...|+-||..|++++...
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36788889999999999999999755
No 145
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=25.45 E-value=6.9e+02 Score=26.04 Aligned_cols=62 Identities=31% Similarity=0.486 Sum_probs=39.4
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh--------hhccccch-------hhHHHHHHHHHHHHHHHHHHHH
Q 028363 111 LLGDGLEPCTIDELQQLENQLERSLSRIRARK--------FRNLVFSQ-------NQLFREQIEKLKEKEKILIEEN 172 (210)
Q Consensus 111 ~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK--------~~~~~~~~-------~~ll~~~i~~l~~k~~~l~een 172 (210)
+.|.+++.=.+.+|..=-..|+..|..|..+. |....|++ ...+..++..++++...+.++-
T Consensus 763 L~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 839 (1201)
T PF12128_consen 763 LAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQEL 839 (1201)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777888888888877 55555664 4444445555554444444433
No 146
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.15 E-value=4.9e+02 Score=23.19 Aligned_cols=51 Identities=25% Similarity=0.258 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 121 IDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 121 ~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.++|+.--++|-+.|..+|+ - --.....+..|..-++.+.|||..|..++.
T Consensus 101 ~~qL~~qnqkL~nqL~~~~~-v--------f~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 101 SEQLQSQNQKLKNQLFHVRE-V--------FMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHhHHHHHHHHHHHHH-H--------HHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45666666777777777776 3 334445566666777777888888776655
No 147
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=25.03 E-value=1.4e+02 Score=20.32 Aligned_cols=44 Identities=27% Similarity=0.167 Sum_probs=26.7
Q ss_pred hHHhhhhccccccccccccccchHHHHHHHHhHHhHHHHHHHHH
Q 028363 65 TIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAK 108 (210)
Q Consensus 65 IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~kL~~~ie~le~~~ 108 (210)
++--|.......+.-+....+.++.+.+..++|...++.||+-+
T Consensus 22 L~lHY~sk~~~~~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 22 LILHYRSKWKSSQGLSEEDEQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556654433322222223456778888899999998888543
No 148
>PRK11637 AmiB activator; Provisional
Probab=24.85 E-value=5.1e+02 Score=23.28 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028363 152 QLFREQIEKLKEKEKILIEENTK 174 (210)
Q Consensus 152 ~ll~~~i~~l~~k~~~l~een~~ 174 (210)
..+..+|..++.+...+.+.-..
T Consensus 106 ~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 106 DELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666555544333
No 149
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=24.77 E-value=1.6e+02 Score=22.35 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 118 PCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
++|++++..+-..+...-...-... ..++.+++..+.++...|..--..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~--------~~~l~~~~~~l~~ki~~L~~~~~~L~~~~~ 111 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDW--------ARLSSQWREELDERIDQLNALRDQLDGCIG 111 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778888877665432111111112 234555555666666555555555555544
No 150
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=24.63 E-value=3.2e+02 Score=20.89 Aligned_cols=73 Identities=22% Similarity=0.216 Sum_probs=31.7
Q ss_pred hhHHhhhhccccccccccccccchH-HHHHHHHhHHhH-HHHHHHHHHh-hc----CCCCCCCCHHHHHHHHHHHHHHHH
Q 028363 64 KTIERYQKKTKDIGINSKIVEDHSQ-HAKEETSNMMTK-LEFLEVAKRK-LL----GDGLEPCTIDELQQLENQLERSLS 136 (210)
Q Consensus 64 ~IieRY~~~~~~~~~~~~~~~~~~e-~lk~e~~kL~~~-ie~le~~~r~-~~----Ge~L~~Ls~~EL~~LE~~Le~~L~ 136 (210)
.+|+...+.+..+.......+..++ ...+++.+|+.+ ...++..+.. +. +..-.++|...+..=-..|...|.
T Consensus 13 ~ll~~L~~s~etD~sR~q~~e~~iq~Rva~eL~~L~~~~~~~~~~~l~~~~~~ed~~~~~~~lSs~~v~~~i~~L~~kLe 92 (142)
T PF07956_consen 13 SLLSQLQSSTETDSSRAQTLELHIQERVAEELKRLEEEELKKFEEALEKSLLSEDEKDQDPGLSSKSVNEEIEKLREKLE 92 (142)
T ss_pred HHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHH
Confidence 4566666665554332222222232 345666666533 2223322211 12 233455665555444444444444
No 151
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=24.63 E-value=3.4e+02 Score=21.10 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=58.3
Q ss_pred cccccccchhhhhhhhhcccCcceeeeeecCC----CC---------cccccch--hhhhhHHhhhhccccccccccccc
Q 028363 20 TFSKRRNGLLKKAFELSVLCDAEVALIIFSPR----GK---------LYEFSSC--SINKTIERYQKKTKDIGINSKIVE 84 (210)
Q Consensus 20 Tf~KRr~GL~KKA~ELsvLCda~valivfs~~----gk---------~~~~~s~--~~~~IieRY~~~~~~~~~~~~~~~ 84 (210)
.|-.=|.-|+.-..+.+-+.+.+|. |||... +. -..|+.. +++..|++|.......+..-.+..
T Consensus 23 ~l~~aR~~Li~~L~~y~~~~~~~v~-VVFDa~~~~~~~~~~~~~~gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVT 101 (166)
T PF05991_consen 23 DLEAARERLIEMLSEYAQFSGYEVI-VVFDAYKVPGGSEEREEYGGIEVVFTKEGETADDYIERLVRELKNRPRQVTVVT 101 (166)
T ss_pred CHHHHHHHHHHHHHHHhcccCCEEE-EEEeCCcCCCCCceeeeeCceEEEECCCCCCHHHHHHHHHHHhccCCCeEEEEe
Confidence 3445566778888888899997764 566632 11 1125442 899999999886554221111111
Q ss_pred ----------------cchHHHHHHHHhHHhHHHHHHHHHHh-hcCCCCCCCCHHHHHHHHH
Q 028363 85 ----------------DHSQHAKEETSNMMTKLEFLEVAKRK-LLGDGLEPCTIDELQQLEN 129 (210)
Q Consensus 85 ----------------~~~e~lk~e~~kL~~~ie~le~~~r~-~~Ge~L~~Ls~~EL~~LE~ 129 (210)
-..+.+..++.....++...-..... .....-+.||.+++..|++
T Consensus 102 SD~~iq~~~~~~GA~~iss~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~l~~ 163 (166)
T PF05991_consen 102 SDREIQRAARGRGAKRISSEEFLRELKAAKREIRKEARERSSKKKKKLDDRLSPEELEKLEK 163 (166)
T ss_pred CCHHHHHHHhhCCCEEEcHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCHHHHHHHHH
Confidence 11234445555555544421111111 1122335677888777765
No 152
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=24.57 E-value=54 Score=28.50 Aligned_cols=30 Identities=17% Similarity=0.435 Sum_probs=21.5
Q ss_pred cccCcceeeeeecCCCCcccccchhhhhhHHhhhhccc
Q 028363 37 VLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTK 74 (210)
Q Consensus 37 vLCda~valivfs~~gk~~~~~s~~~~~IieRY~~~~~ 74 (210)
+||..|.=.-.|..+ |.|++|++.|.+.+.
T Consensus 20 ~LcECely~snYDND--------PeMK~Vme~F~rqTs 49 (299)
T PF02009_consen 20 SLCECELYTSNYDND--------PEMKSVMENFDRQTS 49 (299)
T ss_pred chhhhcccccCCCCc--------HHHHHHHHHHHHHHH
Confidence 578877644444443 899999999987654
No 153
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.57 E-value=3e+02 Score=20.53 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 130 QLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 130 ~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.-+.+...+..|+ +.+.-+|.+|.+++..+.++-..|+..+-
T Consensus 67 ~k~~~~~eL~er~---------E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 67 SKEEAVDELEERK---------ETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555 56666778888888888887777776654
No 154
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=24.36 E-value=47 Score=31.91 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.2
Q ss_pred hcccCcceeeeeecCCCCcccc
Q 028363 36 SVLCDAEVALIIFSPRGKLYEF 57 (210)
Q Consensus 36 svLCda~valivfs~~gk~~~~ 57 (210)
|||.|+-++||.|.++|.++.+
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~ 395 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTV 395 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEee
Confidence 6999999999999999988875
No 155
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.25 E-value=7.8e+02 Score=25.90 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 152 QLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 152 ~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
+-+..+++.++.+.....+.+..|...++
T Consensus 265 ~~l~~ql~~l~~~~~~~~~~~~rL~~~i~ 293 (1311)
T TIGR00606 265 MKLDNEIKALKSRKKQMEKDNSELELKME 293 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555665555566666666665443
No 156
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.14 E-value=2.6e+02 Score=20.13 Aligned_cols=26 Identities=12% Similarity=0.321 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 152 QLFREQIEKLKEKEKILIEENTKLRE 177 (210)
Q Consensus 152 ~ll~~~i~~l~~k~~~l~een~~L~~ 177 (210)
+++.+++..+..+...|..--..|..
T Consensus 84 ~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (112)
T cd01282 84 AVLRRELARIDRQIADLTRSRDRLDA 109 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444443
No 157
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=23.74 E-value=2.6e+02 Score=19.50 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 124 LQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 124 L~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
+..--.+|..+|..+..|. + .|..+.+.|.+-|...|.++..
T Consensus 31 ins~LD~Lns~LD~LE~rn--------D--------~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 31 INSMLDQLNSCLDHLEQRN--------D--------HLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHHHhh--------h--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566777777777 4 4445555666666666666543
No 158
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=23.69 E-value=2.3e+02 Score=21.29 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 118 PCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
+++++|+.++-...+..=... ... .+++.+++..+..+...|+..-..|...+.
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~--------~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T PRK10227 57 GFNLEESGELVNLFNDPQRHS-ADV--------KRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_pred CCCHHHHHHHHHhhccCCCCH-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788777655432110001 111 234555666666666666666555655443
No 159
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=23.60 E-value=5.3e+02 Score=23.01 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=49.1
Q ss_pred hhhhhHHhhhhcccccccccc-ccccchHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028363 61 SINKTIERYQKKTKDIGINSK-IVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIR 139 (210)
Q Consensus 61 ~~~~IieRY~~~~~~~~~~~~-~~~~~~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir 139 (210)
.++.+.+||............ .+......+..+...|..-+.. +.++..+...|+.+-.-+.
T Consensus 8 kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~-----------------~~~~~~~~~~l~~a~~~l~ 70 (363)
T COG0216 8 KLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEK-----------------YREYKKAQEDLEDAKEMLA 70 (363)
T ss_pred HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHh
Confidence 678889999887654321111 1112233344444444332222 2345555555555544444
Q ss_pred HhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 140 ARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKL 175 (210)
Q Consensus 140 ~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L 175 (210)
..+=..| ..+..++|..++.+...|+++-..|
T Consensus 71 ~~~D~em----~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 71 EEKDPEM----REMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred ccCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3330001 2567788888888888888776655
No 160
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=23.53 E-value=6.9e+02 Score=24.28 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=51.5
Q ss_pred hHHHHHHHHhHHhHHHHHHHHHHhhc------CCCCCCCCHHHHHHHHHHHHHHHHH----------HHHhhh--hcccc
Q 028363 87 SQHAKEETSNMMTKLEFLEVAKRKLL------GDGLEPCTIDELQQLENQLERSLSR----------IRARKF--RNLVF 148 (210)
Q Consensus 87 ~e~lk~e~~kL~~~ie~le~~~r~~~------Ge~L~~Ls~~EL~~LE~~Le~~L~~----------Ir~RK~--~~~~~ 148 (210)
.+.+..++..++++++..+..+..+. +..-..+...+|.+|..+|..+-.. ++..-. +....
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~ 275 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDV 275 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 45677788888888877776665432 1122345557888888877754322 221110 00000
Q ss_pred chhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 028363 149 SQNQ-----LFREQIEKLKEKEKILIEENTKLREQCGMQP 183 (210)
Q Consensus 149 ~~~~-----ll~~~i~~l~~k~~~l~een~~L~~~~~~~~ 183 (210)
...- .....|..|+.+...++.+-..|..+.+..+
T Consensus 276 ~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~h 315 (754)
T TIGR01005 276 LPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANH 315 (754)
T ss_pred hhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 0000 0114566777766666666666666665554
No 161
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.47 E-value=4.5e+02 Score=22.10 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 119 CTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
-+..++..|...++.+-.++.+--
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le 109 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLE 109 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766665555543
No 162
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.35 E-value=3.5e+02 Score=20.86 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=30.0
Q ss_pred hHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 87 ~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
+..++.++..++.++..++..+..+. ..++.+||...-..|..-+..+.+|-
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554443 34566777766666666666665555
No 163
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=23.12 E-value=42 Score=29.68 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=21.1
Q ss_pred hhhhhhcccCcceeeeeecCC--CCccccc
Q 028363 31 KAFELSVLCDAEVALIIFSPR--GKLYEFS 58 (210)
Q Consensus 31 KA~ELsvLCda~valivfs~~--gk~~~~~ 58 (210)
.+-.-++||||.++++.|+.. |-.|.|.
T Consensus 270 ~~v~ralLlGaQA~~~A~G~~~~~~~~~w~ 299 (341)
T PF13252_consen 270 VAVARALLLGAQALVIAFGKSGSGMRFFWV 299 (341)
T ss_pred cceeeeeeechhheeeeeeccCCCcccccc
Confidence 445668999999999999983 4455554
No 164
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=23.06 E-value=2.7e+02 Score=19.44 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=35.1
Q ss_pred hhhhhHHhhhhccccccccccccccchHHHHHHHHhHHhHHHHHHHHHHhhcCC--CCCCCCHHHHHHHHHHHHHHHHHH
Q 028363 61 SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGD--GLEPCTIDELQQLENQLERSLSRI 138 (210)
Q Consensus 61 ~~~~IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~kL~~~ie~le~~~r~~~Ge--~L~~Ls~~EL~~LE~~Le~~L~~I 138 (210)
.+..++.+|........ ...........+...+..+...++.|+....-.... .. +++..|+..-...+...-..|
T Consensus 16 ~l~~~~~~~~~~~~~~~-~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~l~~~Ei~~Rr~fv~~~~~~i 93 (97)
T PF09177_consen 16 RLESLYRRWQRLRSDTS-SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-NLSEEEISRRRQFVSAIRNQI 93 (97)
T ss_dssp HHHHHHHHHHHHTTHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCC-CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCHHHHHHHHHHHHHHHHHH
Confidence 56777788877665443 000001112334445555555555555544333222 11 455555555555554444333
No 165
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=23.00 E-value=69 Score=21.43 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=20.4
Q ss_pred cCcceeeeeecCCCCcccccch-hhhhhHHhh
Q 028363 39 CDAEVALIIFSPRGKLYEFSSC-SINKTIERY 69 (210)
Q Consensus 39 Cda~valivfs~~gk~~~~~s~-~~~~IieRY 69 (210)
|+--.+++| +|..|...+| .+.+|++.|
T Consensus 52 C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 52 CDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred CCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 776666666 3788888777 788888764
No 166
>smart00340 HALZ homeobox associated leucin zipper.
Probab=22.98 E-value=1.4e+02 Score=18.06 Aligned_cols=24 Identities=33% Similarity=0.327 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Q 028363 159 EKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 159 ~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
+.|++=-..|.+||..|++.+.+.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677888888888887643
No 167
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=22.79 E-value=3.6e+02 Score=20.71 Aligned_cols=26 Identities=8% Similarity=0.342 Sum_probs=16.5
Q ss_pred ecCCCCcccccch--hhhhhHHhhhhcc
Q 028363 48 FSPRGKLYEFSSC--SINKTIERYQKKT 73 (210)
Q Consensus 48 fs~~gk~~~~~s~--~~~~IieRY~~~~ 73 (210)
|..++..-.||.+ .|...|.+|..-.
T Consensus 7 ~~~de~~G~~CPTgC~i~~~L~k~~~~v 34 (146)
T PF08702_consen 7 CCADEDFGSYCPTGCGIQDFLDKYERDV 34 (146)
T ss_dssp ECSSTTTTEEEE-HHHHHHHHHHHHHHH
T ss_pred cccCccccCCCCCcchHHHHHHHHccch
Confidence 3344444445443 7999999998744
No 168
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=22.70 E-value=1.7e+02 Score=23.31 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=35.4
Q ss_pred cceeeeeec--CCCCcccccch----------hhhhhHHhhhhccccccccccccccchHHHHHHHHhHHhHHHHHHHHH
Q 028363 41 AEVALIIFS--PRGKLYEFSSC----------SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAK 108 (210)
Q Consensus 41 a~valivfs--~~gk~~~~~s~----------~~~~IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~kL~~~ie~le~~~ 108 (210)
+|++||+.. |+||=|..-++ +...++.||....... +...........++.++..+....
T Consensus 96 veaGLI~rrDS~NgkRy~~R~~~G~I~~A~GfdLsPL~~R~~El~~~a--------~~~~~~~~~~r~lr~~it~~rR~i 167 (177)
T PF03428_consen 96 VEAGLIVRRDSPNGKRYARRDRGGRIVEAFGFDLSPLIARAEELAALA--------EAARAERRALRRLRRRITLLRRDI 167 (177)
T ss_pred HHCCCeeeccCCCCCccCccCCCCCEEeEeCcCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888874 88988764332 4677788887655432 122233344455555555554444
Q ss_pred Hh
Q 028363 109 RK 110 (210)
Q Consensus 109 r~ 110 (210)
+.
T Consensus 168 ~~ 169 (177)
T PF03428_consen 168 RK 169 (177)
T ss_pred HH
Confidence 33
No 169
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=22.63 E-value=2.7e+02 Score=20.43 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 118 PCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
|++++|+..+-......-... ... .+++..++..+.++...|+.-...|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~--------~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (126)
T cd04785 57 GFSLEEIRALLALSDRPDRSC-AEA--------DAIARAHLADVRARIADLRRLEAELKRMV 109 (126)
T ss_pred CCCHHHHHHHHhhhhcCCCCH-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778777654332110011 112 34566666777777777766666666555
No 170
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=22.29 E-value=59 Score=29.43 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=45.0
Q ss_pred eeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccch-hhhhhHHhhhh
Q 028363 8 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC-SINKTIERYQK 71 (210)
Q Consensus 8 ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~-~~~~IieRY~~ 71 (210)
|+++-+...-..||..|+.| ||+.+||..+-+.||....-...|+++ -+.+.-+-|+.
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~q~~a~~q~ 76 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEEPIEQTKAQLQK 76 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcccccccHHHHhh
Confidence 77888888888999999999 999999999998888877777777775 33333333443
No 171
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=22.20 E-value=2.7e+02 Score=19.04 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=35.4
Q ss_pred hHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 87 ~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
+..++.|+..++-+...+....+.+. .+++...-..|+..|+..++.+-.+-
T Consensus 19 l~~LqDE~~hm~~e~~~L~~~~~~~d----~s~~~~~R~~L~~~l~~lv~~mE~K~ 70 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQDEYKQMD----PSLGRRKRRDLEQELEELVKRMEAKA 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc----cccChHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655555444443 35677788889999999888887777
No 172
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=22.14 E-value=1.1e+02 Score=26.03 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=24.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028363 112 LGDGLEPCTIDELQQLENQLERSLSRIRA 140 (210)
Q Consensus 112 ~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~ 140 (210)
|=+.=-+||++++..+|......|..+|.
T Consensus 230 W~DeW~gltmedIR~~E~~t~~~l~~~~~ 258 (258)
T cd08888 230 WLDKWHGLTMDDIRRMEDETKKELDEMRE 258 (258)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHHHHhhC
Confidence 34556789999999999999999999873
No 173
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=22.10 E-value=3.4e+02 Score=20.18 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=7.0
Q ss_pred chhhHHHHHHHH
Q 028363 149 SQNQLFREQIEK 160 (210)
Q Consensus 149 ~~~~ll~~~i~~ 160 (210)
.|+.+|++||+.
T Consensus 119 ~QN~lLh~QlE~ 130 (132)
T PF07926_consen 119 EQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHhh
Confidence 446666666654
No 174
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.99 E-value=2.8e+02 Score=20.05 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 118 PCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
+++++|+..+-.....+-... ... .+++..+++.+.++...|..-...|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~--------~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 57 GFSLAEIRELLSLRDDGAAPC-AEV--------RALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred CCCHHHHHHHHHhhhcCCCCH-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777655433210000 112 34455555555555555555555554433
No 175
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=21.92 E-value=63 Score=27.21 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=22.7
Q ss_pred hhhcccCcceeeeeecCCCCcccccch
Q 028363 34 ELSVLCDAEVALIIFSPRGKLYEFSSC 60 (210)
Q Consensus 34 ELsvLCda~valivfs~~gk~~~~~s~ 60 (210)
+|.-.+|++|+|||+.+.|+++--+.+
T Consensus 134 ~l~~~~g~~v~VIItDt~gr~~R~G~~ 160 (243)
T TIGR01916 134 GLRELTGVDVGVIITDTNGRPFREGQV 160 (243)
T ss_pred HHHHHHCCCEEEEEECCCCCccccCCC
Confidence 455678999999999999999887665
No 176
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=21.77 E-value=8.3e+02 Score=24.57 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=7.9
Q ss_pred eecCCCCccccc
Q 028363 47 IFSPRGKLYEFS 58 (210)
Q Consensus 47 vfs~~gk~~~~~ 58 (210)
.|-+.|++..|.
T Consensus 139 ~~~~q~~~~~~~ 150 (1179)
T TIGR02168 139 SIIEQGKISEII 150 (1179)
T ss_pred hheecccHHHHH
Confidence 344777777776
No 177
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=21.56 E-value=3e+02 Score=20.19 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 118 PCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
++|++|+..+-......-... ... ..++..++..+.++...|+.-...|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~--------~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~ 110 (127)
T cd01108 57 GFSLEEIRELLALWRDPSRAS-ADV--------KALALEHIAELERKIAELQAMRRTLQQLAD 110 (127)
T ss_pred CCCHHHHHHHHHHHhCCCCCH-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777654322110001 112 245556666666666666655555555443
No 178
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=21.48 E-value=79 Score=30.49 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=38.1
Q ss_pred cchhhhhhhhhcccCcceeeeeecCCCCcccccchhhhhhHHhhhhcc
Q 028363 26 NGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKT 73 (210)
Q Consensus 26 ~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~IieRY~~~~ 73 (210)
.++|++|.||.|=--+.+.|+=||.. .|+..+.|.|...|.-|.+-+
T Consensus 446 ~e~i~t~~elTvgDtsp~~L~EySEe-~P~~Lsn~GMas~l~nYYRK~ 492 (968)
T COG5179 446 QEIIKTAGELTVGDTSPFSLFEYSEE-EPFFLSNPGMASLLNNYYRKS 492 (968)
T ss_pred hhhhccccceeccCCCceeeeeeccc-CceeecCchHHHHHHHHHHhc
Confidence 68999999999999999999999976 566666788887777766543
No 179
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.47 E-value=2e+02 Score=17.43 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
...+...-+.|+..-..|..||..|+.++..
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888888888888887653
No 180
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=21.39 E-value=44 Score=28.89 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=13.2
Q ss_pred hcccCcceeeeeecCC
Q 028363 36 SVLCDAEVALIIFSPR 51 (210)
Q Consensus 36 svLCda~valivfs~~ 51 (210)
.-+||+||||+||--.
T Consensus 183 ~~~~~~EICLavYek~ 198 (334)
T PF06020_consen 183 GQVSGFEICLAVYEKG 198 (334)
T ss_pred CccccceEEeeehhhh
Confidence 4579999999999754
No 181
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.10 E-value=3.2e+02 Score=23.80 Aligned_cols=43 Identities=30% Similarity=0.470 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 116 LEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKL 175 (210)
Q Consensus 116 L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L 175 (210)
-++||.+|-..| .+||.|| .+|+ ++|+.|+..+....+|-..+
T Consensus 8 p~~Ls~~E~~eL--------~~ir~rk--------~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 8 PNDLSEEERMEL--------ENIRRRK--------QELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCHHHHHhH--------HHHHHHH--------HHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 456777776554 5789999 6655 67888888877776665544
No 182
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=20.94 E-value=4e+02 Score=24.27 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=35.3
Q ss_pred hHHHHHHHHhHHhHHHHHHHHHHhhcCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q 028363 87 SQHAKEETSNMMTKLEFLEVAKRKLLGD-GLEPCTIDELQQLENQLERSLSRI 138 (210)
Q Consensus 87 ~e~lk~e~~kL~~~ie~le~~~r~~~Ge-~L~~Ls~~EL~~LE~~Le~~L~~I 138 (210)
...++....+++.....++..++...-| ...-++.+||..+...+...+..+
T Consensus 257 ~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl~~~Dl~~i~~~lr~l~~~~ 309 (459)
T PF10337_consen 257 LKKLKATKAKLRALYAKLQAALRFLKLEISYGRLSPDDLKPIFSLLRSLMIPL 309 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecCCHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776655432 356688999988887766644433
No 183
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=20.84 E-value=33 Score=30.57 Aligned_cols=42 Identities=36% Similarity=0.422 Sum_probs=0.0
Q ss_pred cccccchhhhhhhhhcccCcceee-eeecCCCCcccccchhhh
Q 028363 22 SKRRNGLLKKAFELSVLCDAEVAL-IIFSPRGKLYEFSSCSIN 63 (210)
Q Consensus 22 ~KRr~GL~KKA~ELsvLCda~val-ivfs~~gk~~~~~s~~~~ 63 (210)
+.=..|++|=+.=..-+|+|..+| -+.+..||+-+|+||++.
T Consensus 50 s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 50 SRAQDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp -------------------------------------------
T ss_pred hhhhhHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 333456666667778999999999 888999999999999776
No 184
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.70 E-value=1.9e+02 Score=24.25 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCC
Q 028363 151 NQLFREQIEKLKEKEK---ILIEENTKLREQCGMQP 183 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~---~l~een~~L~~~~~~~~ 183 (210)
++.|.+++..|+.... .+.+||..|+..+....
T Consensus 78 n~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 78 NEELKKELLELESRLQELEQLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4555666666665554 67889999999887544
No 185
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=20.52 E-value=2.2e+02 Score=17.49 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 028363 152 QLFREQIEKLKEKEKILIEEN 172 (210)
Q Consensus 152 ~ll~~~i~~l~~k~~~l~een 172 (210)
+-+.++|.+|++|-..|...+
T Consensus 22 edid~qIaeLe~KR~~Lv~qH 42 (46)
T PF08946_consen 22 EDIDEQIAELEAKRQRLVDQH 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 444566677777766665544
No 186
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.40 E-value=3e+02 Score=18.99 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028363 156 EQIEKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 156 ~~i~~l~~k~~~l~een~~L~~~ 178 (210)
+.|.-|+-.+..|.++|..|...
T Consensus 18 dtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 187
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=20.24 E-value=2.7e+02 Score=21.58 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 118 PCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
|+|++|+..+-......-...-... ..++.++++.+.++...|+.--..|...+
T Consensus 67 G~sL~eIk~ll~~~~~~~~~~~~~~--------~~ll~~k~~~l~~~I~~L~~~~~~L~~~i 120 (154)
T PRK15002 67 GIPLATIGEAFGVLPEGHTLSAKEW--------KQLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_pred CCCHHHHHHHHHHhhcCCCCCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777776654321110000111 24445555555555555555555555544
No 188
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=20.13 E-value=2.7e+02 Score=20.94 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 152 QLFREQIEKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 152 ~ll~~~i~~l~~k~~~l~een~~L~~~ 178 (210)
.++..+++.+.++...|.+-...|...
T Consensus 84 ~~l~~~~~~l~~~i~~L~~~~~~L~~~ 110 (140)
T PRK09514 84 GIVDEKLAEVEAKIAELQHMRRSLQRL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666555555544444443
Done!