Query 028363
Match_columns 210
No_of_seqs 191 out of 1533
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 17:02:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 4.4E-40 1.5E-44 226.3 0.6 74 2-75 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 1.1E-39 3.9E-44 229.6 0.4 77 2-78 1-77 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 6.3E-38 2.2E-42 224.3 -0.0 71 1-71 16-86 (100)
4 1hbx_A SRF, serum response fac 100.0 8.4E-38 2.9E-42 220.9 -0.4 70 1-70 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 4.2E-37 1.4E-41 221.4 -0.1 69 1-69 9-77 (103)
6 1dip_A Delta-sleep-inducing pe 84.8 1.5 5.1E-05 28.8 4.4 33 150-182 16-48 (78)
7 2w6a_A ARF GTPase-activating p 83.5 6.3 0.00022 24.7 8.3 55 117-177 8-62 (63)
8 3nmd_A CGMP dependent protein 80.5 9.8 0.00033 24.9 7.5 51 115-180 14-64 (72)
9 2dgc_A Protein (GCN4); basic d 79.2 5.7 0.00019 25.2 5.6 26 155-180 29-54 (63)
10 2oqq_A Transcription factor HY 78.6 4.5 0.00016 23.5 4.4 27 154-180 15-41 (42)
11 2yy0_A C-MYC-binding protein; 77.7 4.8 0.00017 24.7 4.8 31 150-180 20-50 (53)
12 1j1d_C Troponin I, TNI; THIN f 77.4 19 0.00064 26.4 10.4 48 113-168 52-105 (133)
13 2jee_A YIIU; FTSZ, septum, coi 76.0 15 0.00051 24.6 8.5 22 119-140 3-24 (81)
14 1dh3_A Transcription factor CR 74.8 9.6 0.00033 23.4 5.6 26 156-181 22-47 (55)
15 1j1e_C Troponin I, TNI; THIN f 71.3 33 0.0011 26.4 9.4 49 113-169 52-106 (180)
16 2wt7_A Proto-oncogene protein 71.0 13 0.00046 23.3 5.8 26 155-180 22-47 (63)
17 3s9g_A Protein hexim1; cyclin 69.9 14 0.0005 25.5 6.0 26 155-180 64-89 (104)
18 1t2k_D Cyclic-AMP-dependent tr 69.6 15 0.00052 22.8 5.8 25 156-180 22-46 (61)
19 1t6f_A Geminin; coiled-coil, c 67.8 10 0.00034 21.2 4.0 29 148-176 6-34 (37)
20 1jnm_A Proto-oncogene C-JUN; B 67.5 18 0.0006 22.6 5.8 26 155-180 21-46 (62)
21 2v71_A Nuclear distribution pr 67.4 32 0.0011 26.7 8.4 24 157-180 89-112 (189)
22 1ci6_A Transcription factor AT 67.0 17 0.00058 22.9 5.6 26 155-180 22-47 (63)
23 2dfs_A Myosin-5A; myosin-V, in 66.1 36 0.0012 33.4 10.3 23 159-181 1019-1041(1080)
24 1ytz_T Troponin T; muscle, THI 61.0 37 0.0012 23.9 6.9 30 113-142 36-65 (107)
25 1uii_A Geminin; human, DNA rep 60.0 15 0.00051 24.7 4.5 31 150-180 47-77 (83)
26 1gk7_A Vimentin; intermediate 58.8 23 0.00078 20.2 5.0 30 152-181 9-38 (39)
27 1j1d_B Troponin T, TNT; THIN f 58.3 36 0.0012 23.8 6.5 28 115-142 38-65 (106)
28 1wlq_A Geminin; coiled-coil; 2 54.6 15 0.00053 24.6 3.8 28 151-178 40-67 (83)
29 2oxj_A Hybrid alpha/beta pepti 54.6 14 0.00048 20.3 3.0 20 159-178 4-23 (34)
30 3m48_A General control protein 53.7 12 0.00042 20.5 2.6 20 160-179 4-23 (33)
31 3s4r_A Vimentin; alpha-helix, 51.8 53 0.0018 22.3 11.0 72 85-180 9-80 (93)
32 3gp4_A Transcriptional regulat 50.6 47 0.0016 24.1 6.5 52 118-178 59-110 (142)
33 2zxx_A Geminin; coiled-coil, c 47.4 18 0.00063 24.0 3.3 28 151-178 36-63 (79)
34 2rpa_A Katanin P60 ATPase-cont 46.9 11 0.00039 24.9 2.2 35 29-74 16-50 (78)
35 3na7_A HP0958; flagellar bioge 46.0 1.1E+02 0.0038 24.3 8.6 23 120-142 88-110 (256)
36 3c3f_A Alpha/beta peptide with 45.8 24 0.00081 19.4 3.0 20 159-178 4-23 (34)
37 1gd2_E Transcription factor PA 45.8 51 0.0018 21.2 5.2 24 156-179 36-59 (70)
38 3oja_B Anopheles plasmodium-re 45.0 1.6E+02 0.0056 25.9 10.9 27 154-180 549-575 (597)
39 1kd8_B GABH BLL, GCN4 acid bas 44.9 24 0.00083 19.6 3.0 26 154-179 6-31 (36)
40 3ghg_A Fibrinogen alpha chain; 44.9 1.8E+02 0.006 26.3 10.5 38 130-176 114-151 (562)
41 2ky6_A Mediator of RNA polymer 44.6 15 0.00051 27.9 2.8 37 36-72 116-160 (166)
42 2l5g_A GPS2 protein, G protein 42.5 45 0.0015 18.8 4.1 22 155-176 14-35 (38)
43 2l5g_B Putative uncharacterize 42.2 49 0.0017 19.1 5.1 16 156-171 23-38 (42)
44 1a93_B MAX protein, coiled coi 42.1 38 0.0013 18.7 3.5 21 151-171 9-29 (34)
45 1fxk_A Prefoldin; archaeal pro 41.6 78 0.0027 21.3 8.9 28 153-180 76-103 (107)
46 3gpv_A Transcriptional regulat 41.5 78 0.0027 23.0 6.5 54 118-180 73-126 (148)
47 3c3g_A Alpha/beta peptide with 41.1 44 0.0015 18.2 3.6 18 161-178 5-22 (33)
48 1m1j_B Fibrinogen beta chain; 40.7 1.1E+02 0.0037 27.1 8.2 41 27-72 55-97 (464)
49 3s4r_A Vimentin; alpha-helix, 39.8 48 0.0016 22.5 4.6 37 123-165 10-46 (93)
50 1go4_E MAD1 (mitotic arrest de 39.2 10 0.00035 26.4 1.1 24 160-183 72-95 (100)
51 1m2d_A [2Fe-2S] ferredoxin; th 39.1 17 0.00057 25.2 2.2 32 39-71 59-91 (110)
52 2wvr_A Geminin; DNA replicatio 38.4 40 0.0014 26.4 4.5 30 151-180 117-146 (209)
53 2zqm_A Prefoldin beta subunit 38.3 93 0.0032 21.2 7.6 25 155-179 83-107 (117)
54 1m1j_C Fibrinogen gamma chain; 38.3 2E+02 0.0067 24.9 11.3 57 50-113 11-69 (409)
55 3hnw_A Uncharacterized protein 37.9 1.1E+02 0.0039 22.1 8.0 26 155-180 109-134 (138)
56 4gfh_A DNA topoisomerase 2; to 37.4 2.3E+02 0.0079 28.1 10.7 43 26-72 958-1000(1177)
57 3oja_B Anopheles plasmodium-re 37.1 2.2E+02 0.0074 25.1 10.6 29 155-183 557-585 (597)
58 1hjb_A Ccaat/enhancer binding 37.0 92 0.0031 20.9 5.6 21 160-180 40-60 (87)
59 2bni_A General control protein 36.4 37 0.0013 18.7 2.8 21 157-177 9-29 (34)
60 1q08_A Zn(II)-responsive regul 36.0 90 0.0031 20.6 5.7 54 118-180 16-70 (99)
61 1gu4_A CAAT/enhancer binding p 36.0 91 0.0031 20.4 5.6 23 158-180 38-60 (78)
62 2oa5_A Hypothetical protein BQ 35.5 1.1E+02 0.0039 21.4 6.6 58 85-142 8-67 (110)
63 3na7_A HP0958; flagellar bioge 35.5 1.7E+02 0.0057 23.3 8.3 23 153-175 94-116 (256)
64 3nrf_A APAG protein; structura 35.4 8.6 0.0003 27.0 0.2 41 12-57 22-62 (106)
65 2dfs_A Myosin-5A; myosin-V, in 35.1 2.7E+02 0.0094 27.2 10.8 11 152-162 1033-1043(1080)
66 2zvv_Y Cyclin-dependent kinase 34.6 9.2 0.00031 19.5 0.2 12 15-26 15-26 (26)
67 3hnw_A Uncharacterized protein 34.0 1.3E+02 0.0046 21.8 11.1 20 154-173 115-134 (138)
68 1deb_A APC protein, adenomatou 33.4 53 0.0018 19.8 3.4 20 161-180 8-27 (54)
69 3t98_B Nucleoporin NUP58/NUP45 33.2 1.1E+02 0.0039 20.7 9.4 75 87-179 14-88 (93)
70 1go4_E MAD1 (mitotic arrest de 32.9 53 0.0018 22.8 3.9 24 157-180 13-36 (100)
71 2jee_A YIIU; FTSZ, septum, coi 31.6 1.1E+02 0.0039 20.2 7.1 23 152-174 23-45 (81)
72 2hy6_A General control protein 31.2 50 0.0017 18.1 2.8 24 156-179 8-31 (34)
73 3m9b_A Proteasome-associated A 30.7 1.2E+02 0.004 24.6 6.2 27 151-177 70-96 (251)
74 2l16_A SEC-independent protein 30.1 3.1 0.00011 27.8 -2.7 30 43-74 16-45 (78)
75 1uo4_A General control protein 29.7 55 0.0019 18.0 2.8 18 161-178 6-23 (34)
76 1g6u_A Domain swapped dimer; d 29.4 83 0.0028 17.9 4.4 26 117-142 15-40 (48)
77 1t2k_D Cyclic-AMP-dependent tr 29.1 1E+02 0.0035 18.8 5.1 28 152-179 32-59 (61)
78 1nkp_B MAX protein, MYC proto- 28.7 1.2E+02 0.0041 19.6 5.1 29 154-182 52-80 (83)
79 1ci6_A Transcription factor AT 28.1 1.1E+02 0.0038 19.0 4.8 29 151-179 32-60 (63)
80 3a7p_A Autophagy protein 16; c 27.9 1.9E+02 0.0064 21.5 10.9 23 156-178 110-132 (152)
81 1kd8_A GABH AIV, GCN4 acid bas 27.7 44 0.0015 18.6 2.2 24 155-178 7-30 (36)
82 1p9i_A Cortexillin I/GCN4 hybr 27.6 47 0.0016 17.3 2.2 16 165-180 8-23 (31)
83 1zps_A PRA-CH, phosphoribosyl- 27.0 15 0.00051 27.1 0.3 36 18-53 56-100 (138)
84 2oa5_A Hypothetical protein BQ 26.9 48 0.0017 23.3 2.9 24 158-181 10-33 (110)
85 1am9_A Srebp-1A, protein (ster 26.4 76 0.0026 20.8 3.7 23 158-180 52-74 (82)
86 3q4f_C DNA repair protein XRCC 25.6 75 0.0026 24.4 4.0 23 156-178 161-183 (186)
87 3h4p_A Proteasome subunit alph 23.9 17 0.00057 29.5 0.0 21 40-60 11-33 (264)
88 3nzj_F Proteasome component C1 23.7 16 0.00054 30.2 -0.1 23 37-59 4-28 (288)
89 3jrn_A AT1G72930 protein; TIR 23.7 39 0.0013 25.7 2.1 33 38-70 60-92 (176)
90 3tnu_B Keratin, type II cytosk 22.9 2E+02 0.007 20.2 9.8 14 92-105 36-49 (129)
91 3mq7_A Bone marrow stromal ant 22.8 2.1E+02 0.0071 20.3 7.6 30 151-180 73-102 (121)
92 4a17_T RPL24, 60S ribosomal pr 22.8 35 0.0012 25.7 1.6 45 34-79 6-54 (158)
93 3hvz_A Uncharacterized protein 22.7 42 0.0014 21.9 1.9 24 44-67 7-31 (78)
94 1ryp_E 20S proteasome; multica 22.4 17 0.00057 28.8 -0.3 17 43-59 2-20 (242)
95 1ryp_D 20S proteasome; multica 21.7 19 0.00065 28.5 -0.0 18 42-59 3-22 (241)
96 3w03_C DNA repair protein XRCC 21.6 1.1E+02 0.0038 23.5 4.3 25 154-178 150-174 (184)
97 1ybx_A Conserved hypothetical 21.5 2.4E+02 0.0083 20.6 6.5 68 86-161 42-132 (143)
98 3ol1_A Vimentin; structural ge 21.3 1.5E+02 0.005 20.8 4.7 22 154-175 18-39 (119)
99 1iru_G 20S proteasome; cell cy 21.0 20 0.0007 28.6 -0.0 22 38-59 4-27 (254)
100 1ryp_B 20S proteasome; multica 20.8 21 0.00072 28.4 0.0 19 41-59 5-25 (250)
101 1tu3_F RAB GTPase binding effe 20.5 1.9E+02 0.0064 18.9 4.5 43 87-142 14-56 (79)
102 3twe_A Alpha4H; unknown functi 20.4 97 0.0033 15.6 3.5 13 92-104 8-20 (27)
103 1iru_B 20S proteasome; cell cy 20.2 22 0.00075 27.9 0.0 19 41-59 5-25 (233)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=4.4e-40 Score=226.28 Aligned_cols=74 Identities=47% Similarity=0.805 Sum_probs=70.3
Q ss_pred CCcccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccchhhhhhHHhhhhcccc
Q 028363 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKD 75 (210)
Q Consensus 2 gR~Ki~ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~IieRY~~~~~~ 75 (210)
||+||+|++|+|+++|||||+|||+||||||+|||||||||||||||||+|++|+|+||+|+.||+||+..+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987653
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=1.1e-39 Score=229.57 Aligned_cols=77 Identities=45% Similarity=0.753 Sum_probs=74.0
Q ss_pred CCcccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccchhhhhhHHhhhhccccccc
Q 028363 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGI 78 (210)
Q Consensus 2 gR~Ki~ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~IieRY~~~~~~~~~ 78 (210)
||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|..||+||+..+.....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~ 77 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHES 77 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998776543
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=6.3e-38 Score=224.31 Aligned_cols=71 Identities=44% Similarity=0.657 Sum_probs=69.5
Q ss_pred CCCcccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccchhhhhhHHhhhh
Q 028363 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK 71 (210)
Q Consensus 1 MgR~Ki~ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~IieRY~~ 71 (210)
|||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+|++|+|+||++..|+++|..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=8.4e-38 Score=220.92 Aligned_cols=70 Identities=37% Similarity=0.562 Sum_probs=68.5
Q ss_pred CCCcccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccchhhhhhHHhhh
Q 028363 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQ 70 (210)
Q Consensus 1 MgR~Ki~ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~IieRY~ 70 (210)
|||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|..||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999774
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=4.2e-37 Score=221.41 Aligned_cols=69 Identities=38% Similarity=0.570 Sum_probs=67.8
Q ss_pred CCCcccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccchhhhhhHHhh
Q 028363 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERY 69 (210)
Q Consensus 1 MgR~Ki~ik~I~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~IieRY 69 (210)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+|..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999973
No 6
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=84.80 E-value=1.5 Score=28.84 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 150 QNQLFREQIEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 150 ~~~ll~~~i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
+.+.+.++|.+|..+...|+.||..|+.-+...
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspE 48 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLASPE 48 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 458899999999999999999999999876633
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=83.47 E-value=6.3 Score=24.72 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 117 EPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLRE 177 (210)
Q Consensus 117 ~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~ 177 (210)
+..+++|..++...|-.+=.+|..-. .-+.-+.+++..++++...|+.||..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLm------kVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLM------KVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHH------HHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 34788999999888888877776532 11456678889999999999999999974
No 8
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.50 E-value=9.8 Score=24.90 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 115 GLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 115 ~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.+++++. +.+|+..|......||.+- +.|..|.+......++...|+.++.
T Consensus 14 ~~~~mgt--i~eLq~~L~~K~eELr~kd-------------~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 14 SIEGRGS--LRDLQYALQEKIEELRQRD-------------ALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp -----CH--HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCc--HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 8899999999999998877 3356666666667777777777664
No 9
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=79.18 E-value=5.7 Score=25.23 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 155 REQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 155 ~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.+.++.|..++..|..+|..|..++.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888887765
No 10
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=78.63 E-value=4.5 Score=23.50 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 154 FREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 154 l~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
+.....+|..++.-|+.||.+||..+.
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 445567888899999999999998653
No 11
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=77.68 E-value=4.8 Score=24.70 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 150 QNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 150 ~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
...-|..+.++|+.++..|.+++..|+.++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788889999999999999999999876
No 12
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=77.37 E-value=19 Score=26.42 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=36.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHH------HHHHHHHHHHHHHH
Q 028363 113 GDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLF------REQIEKLKEKEKIL 168 (210)
Q Consensus 113 Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll------~~~i~~l~~k~~~l 168 (210)
.-+++++|.++|+++-..|...+..+.+-| ..+- ..+|++|+.++..|
T Consensus 52 pL~id~ls~~~L~e~~keLh~~I~~LEeEK--------YDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 52 PLELAGLGFAELQDLARQLHARVDKVDEER--------YDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHcchHHHHHHHHHHHH
Confidence 457999999999999999999999999988 4332 23466666666555
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.00 E-value=15 Score=24.58 Aligned_cols=22 Identities=14% Similarity=0.455 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 028363 119 CTIDELQQLENQLERSLSRIRA 140 (210)
Q Consensus 119 Ls~~EL~~LE~~Le~~L~~Ir~ 140 (210)
+|++=|.+||..++.++..|--
T Consensus 3 MS~ElleqLE~KIq~avdtI~l 24 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTITL 24 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 5777888999999998886544
No 14
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=74.80 E-value=9.6 Score=23.43 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 156 EQIEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 156 ~~i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
..+++|..++..|..+|..|..++..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688889999999999999988763
No 15
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=71.28 E-value=33 Score=26.42 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=39.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhH------HHHHHHHHHHHHHHHH
Q 028363 113 GDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQL------FREQIEKLKEKEKILI 169 (210)
Q Consensus 113 Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~l------l~~~i~~l~~k~~~l~ 169 (210)
.-++++||.++|+++-..|...+..+.+-+ +.+ -..+|++|+.++..|.
T Consensus 52 PLnid~Lse~~L~e~ckELh~~I~~LEeEK--------YDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 52 PLELAGLGFAELQDLARQLHARVDKVDEER--------YDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHhcchhHHHHHHHHHHHH
Confidence 358999999999999999999999999988 433 1246888888887774
No 16
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=71.00 E-value=13 Score=23.32 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 155 REQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 155 ~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.+.++.|..++..|..+|..|...+.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888888887764
No 17
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=69.85 E-value=14 Score=25.53 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 155 REQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 155 ~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
..+|..|..++..|..||..|+...+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777778877776654
No 18
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=69.59 E-value=15 Score=22.82 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 156 EQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 156 ~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
+.++.|..++..|..+|..|..++.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777666654
No 19
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=67.76 E-value=10 Score=21.24 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=23.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 148 FSQNQLFREQIEKLKEKEKILIEENTKLR 176 (210)
Q Consensus 148 ~~~~~ll~~~i~~l~~k~~~l~een~~L~ 176 (210)
+.+++.++-.|+.-......|.++|..|.
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34577788888888888889999998876
No 20
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=67.53 E-value=18 Score=22.62 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 155 REQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 155 ~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.+.++.|..++..|..+|..|..++.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~ 46 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTAN 46 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888888877765
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=67.41 E-value=32 Score=26.70 Aligned_cols=24 Identities=13% Similarity=0.100 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 157 QIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 157 ~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
+|..|+.....|...+..|..++.
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666777777766654
No 22
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.01 E-value=17 Score=22.90 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 155 REQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 155 ~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.+.++.|..++..|..+|..|..++.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666655543
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=66.09 E-value=36 Score=33.38 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 028363 159 EKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 159 ~~l~~k~~~l~een~~L~~~~~~ 181 (210)
++|+.++..|.+||..|+.++.+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888888877654
No 24
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=61.03 E-value=37 Score=23.86 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=27.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 113 GDGLEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 113 Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
.-++++||.++|+++-..|...+..+.+-|
T Consensus 36 pL~id~l~~~~L~e~~keLh~~I~~lEeEK 65 (107)
T 1ytz_T 36 PLNIDHLNEDKLRDKAKELWDWLYQLQTEK 65 (107)
T ss_dssp CCCCSSSCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999988
No 25
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=59.99 E-value=15 Score=24.67 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 150 QNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 150 ~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
+++.|..+|+.++.....|.++|..|+.-.+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888888888888888888876543
No 26
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=58.79 E-value=23 Score=20.17 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 152 QLFREQIEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 152 ~ll~~~i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
+-+.+.....-.|++.|+++|..|..++..
T Consensus 9 q~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 9 QELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455556667899999999999888753
No 27
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=58.33 E-value=36 Score=23.84 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 115 GLEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 115 ~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
++++||.++|+++-..|...+..+.+-|
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEK 65 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEK 65 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999988
No 28
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=54.63 E-value=15 Score=24.59 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~ 178 (210)
++.|...|+.++.....|.++|..|+.-
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888888888888887654
No 29
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=54.61 E-value=14 Score=20.34 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028363 159 EKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 159 ~~l~~k~~~l~een~~L~~~ 178 (210)
+.|..|+..|..+|..|..+
T Consensus 4 nQLE~kVEeLl~~n~~Le~e 23 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHH
Confidence 34444444444444444443
No 30
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=53.72 E-value=12 Score=20.50 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 028363 160 KLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 160 ~l~~k~~~l~een~~L~~~~ 179 (210)
.|..|+..|..+|..|...+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV 23 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEV 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 44455555555555555544
No 31
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=51.84 E-value=53 Score=22.26 Aligned_cols=72 Identities=24% Similarity=0.437 Sum_probs=45.1
Q ss_pred cchHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHH
Q 028363 85 DHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEK 164 (210)
Q Consensus 85 ~~~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k 164 (210)
..++.+...++..-.++..|+..++.+. .++..+. ..-..+- ..++...|..|+++
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le---------~~i~~l~-------~~~~~~~--------~~~ye~~i~~Lr~~ 64 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILL---------AELEQLK-------GQGKSRL--------GDLYEEEMRELRRQ 64 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH-------HHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHh-------hccCCCc--------HHHHHHHHHHHHHH
Confidence 3466666666666666666666554432 1122221 1223344 66788889999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 028363 165 EKILIEENTKLREQCG 180 (210)
Q Consensus 165 ~~~l~een~~L~~~~~ 180 (210)
+..+..++..|.-++.
T Consensus 65 i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 65 VDQLTNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998888888766543
No 32
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=50.56 E-value=47 Score=24.11 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 118 PCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~ 178 (210)
++|++++..+-...+.+-..+..+ ..++.++++.+.++...|+.....|..+
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~---------~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 110 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR---------AELLKKQRIELKNRIDVMQEALDRLDFK 110 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777665443321112221 2344444555555555554444444443
No 33
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=47.41 E-value=18 Score=24.02 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~ 178 (210)
+..|+.+|+.++.....|.+||..|..-
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888778888888777544
No 34
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=46.94 E-value=11 Score=24.94 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=29.1
Q ss_pred hhhhhhhhcccCcceeeeeecCCCCcccccchhhhhhHHhhhhccc
Q 028363 29 LKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTK 74 (210)
Q Consensus 29 ~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~IieRY~~~~~ 74 (210)
+|+|+|.+.+++=|.|++.|. ++-.-|+||.....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~-----------g~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ-----------GVLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-----------HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHH-----------HHHHHHHHHHHhcC
Confidence 589999999999888887764 56788889988664
No 35
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=46.00 E-value=1.1e+02 Score=24.34 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhh
Q 028363 120 TIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 120 s~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
+.+|+..|...++..-.++...-
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777776655555544
No 36
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=45.79 E-value=24 Score=19.40 Aligned_cols=20 Identities=5% Similarity=0.194 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028363 159 EKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 159 ~~l~~k~~~l~een~~L~~~ 178 (210)
+.|..|+..|..+|..|..+
T Consensus 4 nQLEdKVEeLl~~~~~Le~E 23 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHH
Confidence 34444444444444444443
No 37
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.75 E-value=51 Score=21.22 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 156 EQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 156 ~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
.++..|......+..||..|+.++
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i 59 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKV 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555443
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.03 E-value=1.6e+02 Score=25.93 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 154 FREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 154 l~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
+..+++..+++...+.+|+..++.++.
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 334445555555666666666655554
No 39
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=44.89 E-value=24 Score=19.64 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 154 FREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 154 l~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
+.+.+++|-.+-..|+.|-..|+..+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.87 E-value=1.8e+02 Score=26.25 Aligned_cols=38 Identities=11% Similarity=0.262 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 130 QLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLR 176 (210)
Q Consensus 130 ~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~ 176 (210)
.|+..+..|+.+. +..+ .+|..||..++.+..+...|.
T Consensus 114 ELRRrIqyLKekV--------dnQl-snIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKV--------IEKV-QHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHH--------HHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555 3333 455555555555555555553
No 41
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=44.60 E-value=15 Score=27.92 Aligned_cols=37 Identities=16% Similarity=0.450 Sum_probs=27.7
Q ss_pred hcccCcceeeeeecCCCCccc-ccc-h------hhhhhHHhhhhc
Q 028363 36 SVLCDAEVALIIFSPRGKLYE-FSS-C------SINKTIERYQKK 72 (210)
Q Consensus 36 svLCda~valivfs~~gk~~~-~~s-~------~~~~IieRY~~~ 72 (210)
+.-|++.|-+++|||+-+.|. |-. . .++.||..|+..
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~~ 160 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQV 160 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 556999999999999988886 533 2 467777776653
No 42
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.54 E-value=45 Score=18.75 Aligned_cols=22 Identities=50% Similarity=0.483 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028363 155 REQIEKLKEKEKILIEENTKLR 176 (210)
Q Consensus 155 ~~~i~~l~~k~~~l~een~~L~ 176 (210)
.+||..|+.+...|.+|--.|-
T Consensus 14 keQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888777765554
No 43
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.21 E-value=49 Score=19.13 Aligned_cols=16 Identities=56% Similarity=0.692 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 028363 156 EQIEKLKEKEKILIEE 171 (210)
Q Consensus 156 ~~i~~l~~k~~~l~ee 171 (210)
++|..|+++.+.|++.
T Consensus 23 ~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 23 QQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4557788888777664
No 44
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=42.08 E-value=38 Score=18.71 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 028363 151 NQLFREQIEKLKEKEKILIEE 171 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~ee 171 (210)
++--...|++|+++-..|.++
T Consensus 9 n~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHH
Confidence 333444455555544444443
No 45
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=41.63 E-value=78 Score=21.29 Aligned_cols=28 Identities=4% Similarity=0.165 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 153 LFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 153 ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
-+...|+.|.++...+..+...+...+.
T Consensus 76 ~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 76 TLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666665543
No 46
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=41.54 E-value=78 Score=23.02 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 118 PCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
++|++++..+-......-..+..+ ..++.++++.+.++...|+.....|...+.
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~~---------~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~ 126 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILHR---------LKLMKQQEANVLQLIQDTEKNLKKIQQKIA 126 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888766443221122222 245666666666666666666666665554
No 47
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=41.14 E-value=44 Score=18.23 Aligned_cols=18 Identities=6% Similarity=0.073 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028363 161 LKEKEKILIEENTKLREQ 178 (210)
Q Consensus 161 l~~k~~~l~een~~L~~~ 178 (210)
|..|+..|..+|..|..+
T Consensus 5 LEdKvEeLl~~~~~Le~E 22 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENX 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHH
Confidence 334444444444444433
No 48
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=40.70 E-value=1.1e+02 Score=27.09 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=20.0
Q ss_pred chhhhhhhhhcccCcceeeeeecCCCCcccccch--hhhhhHHhhhhc
Q 028363 27 GLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC--SINKTIERYQKK 72 (210)
Q Consensus 27 GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~--~~~~IieRY~~~ 72 (210)
|+-||.-|.. -||+-|.+ +++.+-.||.. .+.+.|-+|+..
T Consensus 55 ~~~~~~~~~~--~~a~~c~~---~~~~~G~~CPTtC~l~D~L~k~q~~ 97 (464)
T 1m1j_B 55 QAMKKGPIIY--PDAGGCKH---PLDELGVLCPTGCELQTTLLKQEKT 97 (464)
T ss_dssp --------CC--CCCSCEEC---SSTTTCEEEECTTHHHHHHHHHHHH
T ss_pred hhhccCcccC--CCCCCccc---cCCCccCcCCCccHHHHHHHHhhhh
Confidence 5567777766 66666643 45555556543 577777777663
No 49
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=39.81 E-value=48 Score=22.50 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHH
Q 028363 123 ELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKE 165 (210)
Q Consensus 123 EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~ 165 (210)
+|+.|-..+-..+.+||.=- .++..|..+|..++.+.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LE------qqN~~Le~~i~~l~~~~ 46 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLE------QQNKILLAELEQLKGQG 46 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhcc
Confidence 45666666666666666433 22566666666666543
No 50
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.21 E-value=10 Score=26.43 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC
Q 028363 160 KLKEKEKILIEENTKLREQCGMQP 183 (210)
Q Consensus 160 ~l~~k~~~l~een~~L~~~~~~~~ 183 (210)
..++.+..|+.|+..|+.++....
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666777777777766443
No 51
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=39.08 E-value=17 Score=25.24 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=23.5
Q ss_pred cCcceeeeeecCCCCcccccch-hhhhhHHhhhh
Q 028363 39 CDAEVALIIFSPRGKLYEFSSC-SINKTIERYQK 71 (210)
Q Consensus 39 Cda~valivfs~~gk~~~~~s~-~~~~IieRY~~ 71 (210)
|+---.++|+ |+|..|...+| .+.+||+.|..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 5544455566 88888877777 89999998754
No 52
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=38.39 E-value=40 Score=26.39 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
++-|..+|+.++..+..|.++|..|+.-++
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777765544
No 53
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=38.35 E-value=93 Score=21.23 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 155 REQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 155 ~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
...|+.|.++...+..+...+...+
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444443
No 54
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=38.32 E-value=2e+02 Score=24.94 Aligned_cols=57 Identities=11% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCCCcccccch--hhhhhHHhhhhccccccccccccccchHHHHHHHHhHHhHHHHHHHHHHhhcC
Q 028363 50 PRGKLYEFSSC--SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLG 113 (210)
Q Consensus 50 ~~gk~~~~~s~--~~~~IieRY~~~~~~~~~~~~~~~~~~e~lk~e~~kL~~~ie~le~~~r~~~G 113 (210)
++.++-.||.. .+.+.|.+|+...... -..++..-.++.++...+..+-..+...+.
T Consensus 11 ~~~~~G~~CPT~C~i~d~L~k~e~~V~~~-------l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~ 69 (409)
T 1m1j_C 11 LDERFGSYCPTTCGIADFFNKYRLTTDGE-------LLEIEGLLQQATNSTGSIEYLIQHIKTIYP 69 (409)
T ss_dssp CCGGGCCEEECTTHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCcccCCcCCCcccHHHHHHHHHhcchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44445555554 7999999998844321 123444455555665555555544444443
No 55
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.90 E-value=1.1e+02 Score=22.14 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 155 REQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 155 ~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
..+++.|+++...|+.++..|...++
T Consensus 109 ~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 109 AKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666655443
No 56
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=37.39 E-value=2.3e+02 Score=28.11 Aligned_cols=43 Identities=19% Similarity=0.452 Sum_probs=27.3
Q ss_pred cchhhhhhhhhcccCcceeeeeecCCCCcccccchhhhhhHHhhhhc
Q 028363 26 NGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (210)
Q Consensus 26 ~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~IieRY~~~ 72 (210)
++|+|.- .|.+-.++ ..+++|.+.|++..|.+ +++||+.|..+
T Consensus 958 ~~L~k~t-~L~~s~~~-~Nm~~~d~~g~i~k~~~--l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 958 IGFYERF-KLISPISL-MNMVAFDPHGKIKKYNS--VNEILSEFYYV 1000 (1177)
T ss_dssp HCHHHHT-TCEEEECC-SCCEEECTTSCEEECSS--HHHHHHHHHHH
T ss_pred HhHHHhc-cCcceecc-eEEEEEcCCCCccCcCC--HHHHHHHHHHH
Confidence 3555543 34433332 25788999999888865 57787777554
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.08 E-value=2.2e+02 Score=25.09 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 028363 155 REQIEKLKEKEKILIEENTKLREQCGMQP 183 (210)
Q Consensus 155 ~~~i~~l~~k~~~l~een~~L~~~~~~~~ 183 (210)
.+++.++++....+.++.+.|..++...+
T Consensus 557 ~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 557 RAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34556667766777777777777665443
No 58
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.02 E-value=92 Score=20.90 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 028363 160 KLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 160 ~l~~k~~~l~een~~L~~~~~ 180 (210)
.+..++..|..||..|+.++.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 59
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=36.43 E-value=37 Score=18.69 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028363 157 QIEKLKEKEKILIEENTKLRE 177 (210)
Q Consensus 157 ~i~~l~~k~~~l~een~~L~~ 177 (210)
.++.|=.+...|+.|-..|+.
T Consensus 9 KvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 9 KLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHH
Confidence 333333334444444444443
No 60
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=36.05 E-value=90 Score=20.57 Aligned_cols=54 Identities=7% Similarity=0.140 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 118 PCTIDELQQLENQLERSLS-RIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~L~-~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
|+|++|+..+-......-. .+. .. ..++.+++..+.++...|..-...|...+.
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~~-~~--------~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTCQ-ES--------KGIVQERLQEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccHH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888887654321100 111 12 356666677777777777766666666554
No 61
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.99 E-value=91 Score=20.43 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 028363 158 IEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 158 i~~l~~k~~~l~een~~L~~~~~ 180 (210)
...+..++..|..||..|+.++.
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666667766666655
No 62
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=35.51 E-value=1.1e+02 Score=21.40 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=41.9
Q ss_pred cchHHHHHHHHhHHhHHHHHHHHHHhh--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 85 DHSQHAKEETSNMMTKLEFLEVAKRKL--LGDGLEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 85 ~~~e~lk~e~~kL~~~ie~le~~~r~~--~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
..++.+..++.+|+-++..|...++.- .+.+-.-|+..+=..+-...-.+|...-.+|
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888899999999998888766542 2245567999998888888888888777777
No 63
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=35.49 E-value=1.7e+02 Score=23.26 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028363 153 LFREQIEKLKEKEKILIEENTKL 175 (210)
Q Consensus 153 ll~~~i~~l~~k~~~l~een~~L 175 (210)
-+..+|+.++++...+.++-..+
T Consensus 94 aL~kEie~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENL 116 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333
No 64
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=35.41 E-value=8.6 Score=27.04 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=31.3
Q ss_pred cCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccc
Q 028363 12 ENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF 57 (210)
Q Consensus 12 ~n~~~RqvTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~ 57 (210)
.++.....||-=.-..|.++.-+|+.+ |++.|+|.|+-|..
T Consensus 22 ~~k~~ytktFdV~vaNl~~~~idLsk~-----C~~a~~~~gkef~l 62 (106)
T 3nrf_A 22 GDKHFRTQAFKVRLVNAAKSEISLKNS-----CLVAQSAAGQSFRL 62 (106)
T ss_dssp TTEEEEEEEEEEEEECCSSSCEECTTC-----EEEEEETTSCEEEE
T ss_pred CCeeEEEEEEEEEEecCCCCccccchh-----hheeeCcCCCEEEe
Confidence 444455666766778888999999955 69999999987654
No 65
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=35.11 E-value=2.7e+02 Score=27.21 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=5.5
Q ss_pred hHHHHHHHHHH
Q 028363 152 QLFREQIEKLK 162 (210)
Q Consensus 152 ~ll~~~i~~l~ 162 (210)
+.+.+|+++|.
T Consensus 1033 ~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1033 TLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455555554
No 66
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=34.60 E-value=9.2 Score=19.51 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=8.8
Q ss_pred CCcccccccccc
Q 028363 15 TSRQVTFSKRRN 26 (210)
Q Consensus 15 ~~RqvTf~KRr~ 26 (210)
+.|++.|+||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 467788888864
No 67
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=34.05 E-value=1.3e+02 Score=21.77 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028363 154 FREQIEKLKEKEKILIEENT 173 (210)
Q Consensus 154 l~~~i~~l~~k~~~l~een~ 173 (210)
+..++..|+++...|+.++.
T Consensus 115 l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 115 LKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666654443
No 68
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.36 E-value=53 Score=19.78 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 028363 161 LKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 161 l~~k~~~l~een~~L~~~~~ 180 (210)
|-+++..|..||..|++.+.
T Consensus 8 L~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34455566667777776655
No 69
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=33.18 E-value=1.1e+02 Score=20.67 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=47.6
Q ss_pred hHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHH
Q 028363 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEK 166 (210)
Q Consensus 87 ~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~~~~~~~~~ll~~~i~~l~~k~~ 166 (210)
+......+...+..|+.++..+.-.. .-..+|+.+|...-+.+....-.+-++- ..+...+.
T Consensus 14 v~~fe~rL~~Yr~~IeelE~~L~s~s--~~~~~Tpq~L~~~l~~~h~~FiaLAa~l----------------~~lH~~V~ 75 (93)
T 3t98_B 14 VQQFEVQLQQYRQQIEELENHLATQA--NNSHITPQDLSMAMQKIYQTFVALAAQL----------------QSIHENVK 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHH--HHTTSCHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH
Confidence 44556667777888888885443322 2256788777777777776665555554 56666666
Q ss_pred HHHHHHHHHHHHh
Q 028363 167 ILIEENTKLREQC 179 (210)
Q Consensus 167 ~l~een~~L~~~~ 179 (210)
.+.++-..+++.+
T Consensus 76 ~~Ke~Yl~~rr~~ 88 (93)
T 3t98_B 76 VLKEQYLSYRKMF 88 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666654
No 70
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.91 E-value=53 Score=22.77 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 157 QIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 157 ~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
++..|++++..|..||..|+.+..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555443
No 71
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.61 E-value=1.1e+02 Score=20.21 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028363 152 QLFREQIEKLKEKEKILIEENTK 174 (210)
Q Consensus 152 ~ll~~~i~~l~~k~~~l~een~~ 174 (210)
.++..+|++|+.+-..|.++|..
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666655554443333
No 72
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=31.19 E-value=50 Score=18.11 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 156 EQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 156 ~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
+.+++|-.+-..|+.|-..|+.-+
T Consensus 8 dkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 8 DAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 333444444444444444444433
No 73
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.66 E-value=1.2e+02 Score=24.60 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLRE 177 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~ 177 (210)
++.|.+.+..++++...|.+|+..|..
T Consensus 70 Ne~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 70 NSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 677788888999999999999888764
No 74
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=30.11 E-value=3.1 Score=27.77 Aligned_cols=30 Identities=40% Similarity=0.661 Sum_probs=20.6
Q ss_pred eeeeeecCCCCcccccchhhhhhHHhhhhccc
Q 028363 43 VALIIFSPRGKLYEFSSCSINKTIERYQKKTK 74 (210)
Q Consensus 43 valivfs~~gk~~~~~s~~~~~IieRY~~~~~ 74 (210)
|+||||+|. |+++.+. ++-..+..|++...
T Consensus 16 VaLlvfGpk-kLP~l~r-~lGk~ir~fK~~~~ 45 (78)
T 2l16_A 16 IALIIFGPS-KLPEIGR-AAGRTLLEFKSATK 45 (78)
T ss_dssp HHHHHSCTT-THHHHHH-HHHHHHHHHHHHHH
T ss_pred HHhheeCcc-HhHHHHH-HHHHHHHHHHHHHH
Confidence 789999986 7766654 45566666666544
No 75
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=29.70 E-value=55 Score=17.97 Aligned_cols=18 Identities=6% Similarity=0.300 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028363 161 LKEKEKILIEENTKLREQ 178 (210)
Q Consensus 161 l~~k~~~l~een~~L~~~ 178 (210)
|..|+..|..+|..|...
T Consensus 6 LEdKVEeLl~~n~~Le~E 23 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 334444444444444433
No 76
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=29.41 E-value=83 Score=17.93 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 117 EPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 117 ~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
+++|.+||..||..|+..-+..-.-|
T Consensus 15 egfspeelaaleselqalekklaalk 40 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALK 40 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999988766544444333
No 77
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.07 E-value=1e+02 Score=18.83 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 152 QLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 152 ~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
.-+..+...|+..+..|.+|+..|+..+
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666667777777777776554
No 78
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.65 E-value=1.2e+02 Score=19.63 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 028363 154 FREQIEKLKEKEKILIEENTKLREQCGMQ 182 (210)
Q Consensus 154 l~~~i~~l~~k~~~l~een~~L~~~~~~~ 182 (210)
|..++..|+.....|..+|..|..++...
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666677777788888888877643
No 79
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.11 E-value=1.1e+02 Score=18.95 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQC 179 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~ 179 (210)
.+-+..+...|+.++..|..|+..|+.-+
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777777777776544
No 80
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.92 E-value=1.9e+02 Score=21.53 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028363 156 EQIEKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 156 ~~i~~l~~k~~~l~een~~L~~~ 178 (210)
-+...+..+.+.|++||..|..+
T Consensus 110 lq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 110 IENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888899999887655
No 81
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.67 E-value=44 Score=18.58 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 155 REQIEKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 155 ~~~i~~l~~k~~~l~een~~L~~~ 178 (210)
.+.+++|-.+...|+.|-..|+..
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 82
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=27.62 E-value=47 Score=17.27 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhc
Q 028363 165 EKILIEENTKLREQCG 180 (210)
Q Consensus 165 ~~~l~een~~L~~~~~ 180 (210)
...|+-||++|..+++
T Consensus 8 lasleaenkqlkakve 23 (31)
T 1p9i_A 8 LASLEAENKQLKAKVE 23 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456666766666654
No 83
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=26.96 E-value=15 Score=27.08 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=27.6
Q ss_pred cccccccccch---------hhhhhhhhcccCcceeeeeecCCCC
Q 028363 18 QVTFSKRRNGL---------LKKAFELSVLCDAEVALIIFSPRGK 53 (210)
Q Consensus 18 qvTf~KRr~GL---------~KKA~ELsvLCda~valivfs~~gk 53 (210)
-..||+-|+.| +-+..|+.+-||.|+-|+..-|.|-
T Consensus 56 ~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q~G~ 100 (138)
T 1zps_A 56 AHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGG 100 (138)
T ss_dssp CEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESSC
T ss_pred EEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEecCC
Confidence 33457767655 4567899999999999999988873
No 84
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=26.94 E-value=48 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 028363 158 IEKLKEKEKILIEENTKLREQCGM 181 (210)
Q Consensus 158 i~~l~~k~~~l~een~~L~~~~~~ 181 (210)
+++|..+...|+-||+.|++++..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888899999999999999975
No 85
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=26.35 E-value=76 Score=20.77 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 028363 158 IEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 158 i~~l~~k~~~l~een~~L~~~~~ 180 (210)
|..|+..+..|.+++..|+..+.
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888887765
No 86
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=25.57 E-value=75 Score=24.43 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028363 156 EQIEKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 156 ~~i~~l~~k~~~l~een~~L~~~ 178 (210)
++|.+|+.+...|++||..|...
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888888899888754
No 87
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=23.93 E-value=17 Score=29.51 Aligned_cols=21 Identities=33% Similarity=0.776 Sum_probs=13.3
Q ss_pred CcceeeeeecCCCCccc--ccch
Q 028363 40 DAEVALIIFSPRGKLYE--FSSC 60 (210)
Q Consensus 40 da~valivfs~~gk~~~--~~s~ 60 (210)
+-|-++-+|||.|++|. |+..
T Consensus 11 ~yd~~~t~fSp~Grl~QvEYA~~ 33 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQVEYARE 33 (264)
T ss_dssp -----CCCCCSSSSCHHHHHHHH
T ss_pred ccCCCcceECCCCeeHHHHhHHH
Confidence 44677889999999995 7653
No 88
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=23.68 E-value=16 Score=30.16 Aligned_cols=23 Identities=17% Similarity=0.505 Sum_probs=17.3
Q ss_pred cccCcceeeeeecCCCCccc--ccc
Q 028363 37 VLCDAEVALIIFSPRGKLYE--FSS 59 (210)
Q Consensus 37 vLCda~valivfs~~gk~~~--~~s 59 (210)
+-.+-|-.+-+|||.|++|. |+.
T Consensus 4 ~~~~yd~~~t~fSP~Grl~QvEYA~ 28 (288)
T 3nzj_F 4 IGTGYDLSNSVFSPDGRNFQVEYAV 28 (288)
T ss_dssp -CCCTTSSTTCCCTTSCCHHHHHHH
T ss_pred CcCCccCCcccCCCCCchHHHHHHH
Confidence 44566778889999999985 544
No 89
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=23.68 E-value=39 Score=25.74 Aligned_cols=33 Identities=6% Similarity=0.035 Sum_probs=24.7
Q ss_pred ccCcceeeeeecCCCCcccccchhhhhhHHhhh
Q 028363 38 LCDAEVALIIFSPRGKLYEFSSCSINKTIERYQ 70 (210)
Q Consensus 38 LCda~valivfs~~gk~~~~~s~~~~~IieRY~ 70 (210)
..++.+++||||++=--..||-..+..|++...
T Consensus 60 Ie~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~ 92 (176)
T 3jrn_A 60 IEVSRFAVVVVSENYAASSWCLDELVTIMDFEK 92 (176)
T ss_dssp CTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEEEecCCcCCChhHHHHHHHHHhhhc
Confidence 467889999999995555566667778887653
No 90
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.86 E-value=2e+02 Score=20.23 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=5.6
Q ss_pred HHHHhHHhHHHHHH
Q 028363 92 EETSNMMTKLEFLE 105 (210)
Q Consensus 92 ~e~~kL~~~ie~le 105 (210)
.++..++..+..|+
T Consensus 36 ~Ei~elrr~iq~L~ 49 (129)
T 3tnu_B 36 HEISEMNRMIQRLR 49 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 91
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.82 E-value=2.1e+02 Score=20.31 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028363 151 NQLFREQIEKLKEKEKILIEENTKLREQCG 180 (210)
Q Consensus 151 ~~ll~~~i~~l~~k~~~l~een~~L~~~~~ 180 (210)
.+-+.++|.+|.++......+-..|+....
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 677889999999999998888888888765
No 92
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=22.81 E-value=35 Score=25.72 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=28.5
Q ss_pred hhhcccCcce----eeeeecCCCCcccccchhhhhhHHhhhhcccccccc
Q 028363 34 ELSVLCDAEV----ALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGIN 79 (210)
Q Consensus 34 ELsvLCda~v----alivfs~~gk~~~~~s~~~~~IieRY~~~~~~~~~~ 79 (210)
|+|.-||.+| +....-.+|+.|.|+|+--...+ .....|....|.
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f-~~krnPRkl~WT 54 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLS-LRKVKAQKITWT 54 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHH-HHTCCGGGSTTS
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHH-HcccCcccchhH
Confidence 5677788777 44445578899999998333333 345556555543
No 93
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=22.74 E-value=42 Score=21.92 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=18.4
Q ss_pred eeeeecCCCCcccccch-hhhhhHH
Q 028363 44 ALIIFSPRGKLYEFSSC-SINKTIE 67 (210)
Q Consensus 44 alivfs~~gk~~~~~s~-~~~~Iie 67 (210)
-+.||.|+|..++++.. .+.++..
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~ 31 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAY 31 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHH
Confidence 37899999999999875 5555543
No 94
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=22.40 E-value=17 Score=28.83 Aligned_cols=17 Identities=35% Similarity=0.792 Sum_probs=12.9
Q ss_pred eeeeeecCCCCccc--ccc
Q 028363 43 VALIIFSPRGKLYE--FSS 59 (210)
Q Consensus 43 valivfs~~gk~~~--~~s 59 (210)
-++-+|||.|++|. |+.
T Consensus 2 ~~~t~fsp~Grl~QvEyA~ 20 (242)
T 1ryp_E 2 RGVSTFSPEGRLFQVEYSL 20 (242)
T ss_dssp CCTTCBCTTSCBHHHHHHH
T ss_pred CCCceECCCCcChHHHhHH
Confidence 34568999999995 754
No 95
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=21.72 E-value=19 Score=28.47 Aligned_cols=18 Identities=39% Similarity=0.864 Sum_probs=14.0
Q ss_pred ceeeeeecCCCCccc--ccc
Q 028363 42 EVALIIFSPRGKLYE--FSS 59 (210)
Q Consensus 42 ~valivfs~~gk~~~--~~s 59 (210)
|-++-+|||.|++|. |+.
T Consensus 3 d~~~t~fsp~Grl~QvEya~ 22 (241)
T 1ryp_D 3 DRALSIFSPDGHIFQVEYAL 22 (241)
T ss_dssp CCCCSCCBTTTBCHHHHHHH
T ss_pred CCCceeECCCCcchHHHHHH
Confidence 456779999999995 653
No 96
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.63 E-value=1.1e+02 Score=23.51 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028363 154 FREQIEKLKEKEKILIEENTKLREQ 178 (210)
Q Consensus 154 l~~~i~~l~~k~~~l~een~~L~~~ 178 (210)
+.+.+..|+.+...|+++|..|+..
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777778888777665
No 97
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=21.49 E-value=2.4e+02 Score=20.61 Aligned_cols=68 Identities=12% Similarity=0.241 Sum_probs=42.4
Q ss_pred chHHHHHHHHhHHhHHHHHHHHHHhhc---------------CC--------CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 86 HSQHAKEETSNMMTKLEFLEVAKRKLL---------------GD--------GLEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 86 ~~e~lk~e~~kL~~~ie~le~~~r~~~---------------Ge--------~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
++..+-.++.+++++++.++.++.... |. |-+-+..+|...||+.|-.++.....+-
T Consensus 42 nm~~mmkQAQkmQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~ka 121 (143)
T 1ybx_A 42 NINNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKA 121 (143)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777777777765532 11 1123455677778888888888887777
Q ss_pred hhccccchhhHHHHHHHHH
Q 028363 143 FRNLVFSQNQLFREQIEKL 161 (210)
Q Consensus 143 ~~~~~~~~~~ll~~~i~~l 161 (210)
.+...+.+..+
T Consensus 122 --------~e~~~e~M~~l 132 (143)
T 1ybx_A 122 --------DEMVTAEISKI 132 (143)
T ss_dssp --------HHHHHHHHHHH
T ss_pred --------HHHHHHHHHHH
Confidence 66665555544
No 98
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.31 E-value=1.5e+02 Score=20.85 Aligned_cols=22 Identities=14% Similarity=0.502 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028363 154 FREQIEKLKEKEKILIEENTKL 175 (210)
Q Consensus 154 l~~~i~~l~~k~~~l~een~~L 175 (210)
|...|+.|++++..+..+|..|
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l 39 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARV 39 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333333
No 99
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=20.95 E-value=20 Score=28.65 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=16.5
Q ss_pred ccCcceeeeeecCCCCccc--ccc
Q 028363 38 LCDAEVALIIFSPRGKLYE--FSS 59 (210)
Q Consensus 38 LCda~valivfs~~gk~~~--~~s 59 (210)
-.+=|-++-+|||.|++|+ |+.
T Consensus 4 ~~~yd~~~t~fsp~Grl~QvEyA~ 27 (254)
T 1iru_G 4 GTGYDLSASTFSPDGRVFQVEYAM 27 (254)
T ss_dssp CSSTTSCTTCCCTTSCCHHHHHHH
T ss_pred ccccCCCCccCCcCCccHHHHhHH
Confidence 3455667789999999995 754
No 100
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=20.81 E-value=21 Score=28.44 Aligned_cols=19 Identities=37% Similarity=0.600 Sum_probs=14.9
Q ss_pred cceeeeeecCCCCccc--ccc
Q 028363 41 AEVALIIFSPRGKLYE--FSS 59 (210)
Q Consensus 41 a~valivfs~~gk~~~--~~s 59 (210)
-|-.+-+|||.|++|. |+.
T Consensus 5 yd~~~t~fsp~Grl~QvEyA~ 25 (250)
T 1ryp_B 5 YSFSLTTFSPSGKLGQIDYAL 25 (250)
T ss_dssp CCSBSSCBCTTSCBHHHHHHH
T ss_pred ccCCceeECCCCccHHHHhHH
Confidence 4567789999999995 754
No 101
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=20.47 E-value=1.9e+02 Score=18.87 Aligned_cols=43 Identities=26% Similarity=0.406 Sum_probs=27.3
Q ss_pred hHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028363 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARK 142 (210)
Q Consensus 87 ~e~lk~e~~kL~~~ie~le~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 142 (210)
+..++..+..|+.+++..+..+| |.-.|.+.|...|.+||.--
T Consensus 14 ~~e~k~kv~~LQ~eLdtsE~VQr-------------DFVkLSQsLQvqLE~IRqad 56 (79)
T 1tu3_F 14 MFEEKNKAQRLQTELDVSEQVQR-------------DFVKLSQTLQVQLERIRQAD 56 (79)
T ss_dssp -------CHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhh
Confidence 34455666777777777777665 55678889999999998754
No 102
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.37 E-value=97 Score=15.55 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=5.1
Q ss_pred HHHHhHHhHHHHH
Q 028363 92 EETSNMMTKLEFL 104 (210)
Q Consensus 92 ~e~~kL~~~ie~l 104 (210)
.|++.|+..+..+
T Consensus 8 keledlqerlrkl 20 (27)
T 3twe_A 8 KELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444433333
No 103
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=20.18 E-value=22 Score=27.93 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=14.8
Q ss_pred cceeeeeecCCCCccc--ccc
Q 028363 41 AEVALIIFSPRGKLYE--FSS 59 (210)
Q Consensus 41 a~valivfs~~gk~~~--~~s 59 (210)
-|-.+-+|||.|++|. |+.
T Consensus 5 yd~~~t~fsp~Grl~QvEya~ 25 (233)
T 1iru_B 5 YSFSLTTFSPSGKLVQIEYAL 25 (233)
T ss_dssp CCSBSCCCCTTSCCHHHHHHH
T ss_pred ccCCceeECCCCeEehhHhHH
Confidence 3566789999999995 754
Done!