BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028365
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 20 VNDFCVADLK-LSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQF 77
+ DFCVADL + S G+ C P + DDF+FS L AGNT++ +AVT VA++
Sbjct: 6 LQDFCVADLDGKAVSVNGHTCKPMSEA-GDDFLFSSKLTKAGNTSTPNGSAVTELDVAEW 64
Query: 78 PAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLK 135
P N LG+S+AR+D A GG P H HP A+EI +V+ G + G + S S N +Y + ++
Sbjct: 65 PGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVR 124
Query: 136 KGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTF 193
G+ + P+GL+HFQ N G A VSFNS NPG+ LF ++ + + ++ +
Sbjct: 125 AGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTKALR 184
Query: 194 LDDATVKRLKAILGG 208
++ V+ LK+ G
Sbjct: 185 VEAGVVELLKSKFAG 199
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 112/195 (57%), Gaps = 7/195 (3%)
Query: 20 VNDFCVADLK-LSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQF 77
+ DFCVADL + S G+ C P + DDF+FS L AGNT++ +AVT VA++
Sbjct: 6 LQDFCVADLDGKAVSVNGHTCKPMSEA-GDDFLFSSKLTKAGNTSTPNGSAVTELDVAEW 64
Query: 78 PAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLK 135
P N LG+S+ R+D A GG P H HP A+EI +V+ G + G + S S N +Y + ++
Sbjct: 65 PGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVR 124
Query: 136 KGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTF 193
G+ + P+GL+HFQ N G A VSFNS NPG+ LF ++ + + ++ +
Sbjct: 125 AGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTKALR 184
Query: 194 LDDATVKRLKAILGG 208
++ V+ LK+ G
Sbjct: 185 VEAGVVELLKSKFAG 199
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 112/195 (57%), Gaps = 7/195 (3%)
Query: 20 VNDFCVADLK-LSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQF 77
+ DFCVADL + S G+ C P + DDF+FS L AGNT++ +AVT VA++
Sbjct: 6 LQDFCVADLDGKAVSVNGHTCKPMSEA-GDDFLFSSKLTKAGNTSTPNGSAVTELDVAEW 64
Query: 78 PAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLK 135
P N LG+S+ R+D A GG P H HP A+EI +V+ G + G + S S N +Y + ++
Sbjct: 65 PGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVR 124
Query: 136 KGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTF 193
G+ + P+GL+HFQ N G A VSFNS NPG+ LF ++ + + ++ +
Sbjct: 125 AGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTKALR 184
Query: 194 LDDATVKRLKAILGG 208
++ V+ LK+ G
Sbjct: 185 VEAGVVELLKSKFAG 199
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 77 FPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKK 136
PA+ GLS + L + G+ H + A+ ++ V G ++ N V+ L++
Sbjct: 359 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNXQGNAVFDGELRR 418
Query: 137 GDIMIFPQGLLHFQVNSGADGALGFVSFNS 166
G +++ PQ + G + L +V F +
Sbjct: 419 GQLLVVPQNFV--VAEQGGEQGLEYVVFKT 446
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 77 FPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKK 136
PA+ GLS + L + G+ H + A+ ++ V G ++ N V+ L++
Sbjct: 358 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRR 417
Query: 137 GDIMIFPQGLLHFQVNSGADGALGFVSFNS 166
G +++ PQ + G + L +V F +
Sbjct: 418 GQLLVVPQNFV--VAEQGGEQGLEYVVFKT 445
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQ 144
L+ + L G + +H H A E +++G + + ++ + +GD+ FP
Sbjct: 79 LASVNMRLKPGAIAELHWHKEA-EWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLWYFPS 136
Query: 145 GLLHFQVNSGADGALGFVSFN----SPNPGLQITDF 176
GL H + + +GA + F+ S N Q+TD+
Sbjct: 137 GLPH-SIQALEEGAEFLLVFDDGSFSENSTFQLTDW 171
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQ 144
L+ + L G + +H H A E +++G + + ++ + +GD+ FP
Sbjct: 79 LASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLWYFPS 136
Query: 145 GLLHFQVNSGADGALGFVSFN----SPNPGLQITDF 176
GL H + + +GA + F+ S N Q+TD+
Sbjct: 137 GLPH-SIQALEEGAEFLLVFDDGSFSENSTFQLTDW 171
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 84 GLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFP 143
G++ + L G + +H H A+E V+ G T ++S V + + KG + FP
Sbjct: 51 GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGR-TRITLTSPEGKVEIADVDKGGLWYFP 109
Query: 144 QGLLHFQVNSGADGALGFVSFN 165
+G H G D A + FN
Sbjct: 110 RGWGHSIEGIGPDTAKFLLVFN 131
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQ 144
L+ + L G + +H H A E +++G + + ++ + +GD+ FP
Sbjct: 79 LASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLWYFPS 136
Query: 145 GLLHFQVNSGADGALGFVSFN----SPNPGLQITDF 176
GL H + + +GA + F+ S N Q+TD+
Sbjct: 137 GLPH-SIQALEEGAEFLLVFDDGSFSANSTFQLTDW 171
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQ 144
L+ + L G + +H H A E +++G + + ++ + +GD+ FP
Sbjct: 74 LASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLWYFPS 131
Query: 145 GLLHFQVNSGADGALGFVSFN----SPNPGLQITDF 176
GL H + + +GA + F+ S N Q+TD+
Sbjct: 132 GLPH-SIQALEEGAEFLLVFDDGSFSENSVFQLTDW 166
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQ 144
L+ + L G + +H H A E +++G + + ++ + +GD+ FP
Sbjct: 79 LASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLWYFPS 136
Query: 145 GLLHF--QVNSGADGALGFV--SFNSPNPGLQITDF 176
GL H + GA+ L F SF+S N Q+TD+
Sbjct: 137 GLPHSIQALEEGAEFLLVFDDGSFDSSN-TFQLTDW 171
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQ 144
L+ + L G + +H H A E +++G + + ++ + +GD+ FP
Sbjct: 79 LASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLWYFPS 136
Query: 145 GLLHFQVNSGADGALGFVSFN----SPNPGLQITDF 176
GL H + + +GA + F+ + N Q+TD+
Sbjct: 137 GLPH-SIQALEEGAEFLLVFDDGSFAENSTFQLTDW 171
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 92 LAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQV 151
L G + +H H A E ++G + + ++ + +GD+ FP GL H +
Sbjct: 86 LKPGAIRELHWHKEA-EWAYXIYGSARVTIVDEKGRS-FIDDVGEGDLWYFPSGLPH-SI 142
Query: 152 NSGADGALGFVSFN----SPNPGLQITDF 176
+ +GA + F+ S N Q+TD+
Sbjct: 143 QALEEGAEFLLVFDDGSFSENSTFQLTDW 171
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQ 144
L+ + L G + +H H A E +++G + + ++ + +GD+ FP
Sbjct: 79 LASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLWYFPS 136
Query: 145 GLLHFQVNSGADGALGFVSFN--SPNPGLQITDF 176
GL H + + +GA + F+ S + Q+TD+
Sbjct: 137 GLPH-SIQALEEGAEFLLVFDDGSFSSTFQLTDW 169
>pdb|2ZUH|A Chain A, Crystal Structure Of Camphor-Soaked Ferric Cytochrome
P450cam Mutant (D297a)
Length = 415
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 104 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGL 146
PAA E LL + AG I +S + LKKGD ++ PQ L
Sbjct: 283 PAACEELLRRFSLVAAGRILTSDYEFHGVQLKKGDQILLPQML 325
>pdb|4EK1|A Chain A, Crystal Structure Of Electron-Spin Labeled Cytochrome
P450cam
pdb|4EK1|B Chain B, Crystal Structure Of Electron-Spin Labeled Cytochrome
P450cam
Length = 414
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 104 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGL 146
PAASE LL + G I +S + LKKGD ++ PQ L
Sbjct: 282 PAASEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQML 324
>pdb|2F4P|A Chain A, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|B Chain B, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|C Chain C, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|D Chain D, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
Length = 147
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 101 HTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQ 150
H+HP +IL+V G GF + LKKGD++ P ++H+
Sbjct: 64 HSHPGG-QILIVTRG---KGFYQERGKPARI--LKKGDVVEIPPNVVHWH 107
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 48 DDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAAS 107
D +VFSG + G T I V A + + P G G +A + L++G T +
Sbjct: 218 DFYVFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG------TTWTKA 270
Query: 108 EILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHF---QVNS-------GADG 157
T G I A YV L +I + Q L+H+ Q+ S G
Sbjct: 271 PWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQN 330
Query: 158 ALGFVSFN 165
LG ++FN
Sbjct: 331 RLGVIAFN 338
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 48 DDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAAS 107
D +VFSG + G T I V A + + P G G +A + L++G T +
Sbjct: 218 DFYVFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG------TTWTKA 270
Query: 108 EILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHF---QVNS-------GADG 157
T G I A YV L +I + Q L+H+ Q+ S G
Sbjct: 271 PWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQA 330
Query: 158 ALGFVSFN 165
LG ++FN
Sbjct: 331 RLGVIAFN 338
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 48 DDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAAS 107
D +VFSG + G T I V A + + P G G +A + L++G T +
Sbjct: 220 DFYVFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG------TTWTKA 272
Query: 108 EILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHF---QVNS-------GADG 157
T G I A YV L +I + Q L+H+ Q+ S G
Sbjct: 273 PWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQN 332
Query: 158 ALGFVSFN 165
LG ++FN
Sbjct: 333 RLGVIAFN 340
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 48 DDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAAS 107
D +VFSG + G T I V A + + P G G +A + L++G T +
Sbjct: 218 DFYVFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG------TTWTKA 270
Query: 108 EILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHF---QVNS-------GADG 157
T G I A YV L +I + Q L+H+ Q+ S G
Sbjct: 271 PWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQN 330
Query: 158 ALGFVSFN 165
LG ++FN
Sbjct: 331 RLGVIAFN 338
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 87 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKT--LKKGDIMIFPQ 144
L LDL + IH P+ +I L + +T I+ +AN +++ L+ DI+ F
Sbjct: 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423
Query: 145 GLLHFQV 151
+ H Q+
Sbjct: 424 RVPHLQI 430
>pdb|3H8U|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
With Double- Stranded Beta-Helix Domain (Yp_001338853.1)
From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
At 1.80 A Resolution
pdb|3H8U|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
With Double- Stranded Beta-Helix Domain (Yp_001338853.1)
From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
At 1.80 A Resolution
Length = 125
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 81 NGLGLSLARLDLAKGGVIPIHTHPAASEILLVVH--GCITAGFISSSANTVY----VKTL 134
NG + L+ V+ H HP EI VH G T IS A V L
Sbjct: 25 NGEPIRSVVLETNDSVVVVWHAHPG-QEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHL 83
Query: 135 KKGDIMIFPQGLLHFQVNSGADGALGFVSFNSP 167
K GDI I G +H NSG + + FVS +P
Sbjct: 84 KAGDIAIAKPGQVHGAXNSGPEPFI-FVSVVAP 115
>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|B Chain B, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|C Chain C, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|D Chain D, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|E Chain E, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|F Chain F, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L
Length = 496
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 21/128 (16%)
Query: 17 NAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQ 76
N + C A L+L+ P+ P D G TS+
Sbjct: 311 NGLEETVCTAKLRLNIGPSSSP----------DIYNPEAGRIKTVTSL-----------D 349
Query: 77 FPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKK 136
P + L LS L K + H + A+ I+ + G ++ + NTV+ L+
Sbjct: 350 LPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEA 409
Query: 137 GDIMIFPQ 144
G + PQ
Sbjct: 410 GRALTVPQ 417
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 131 VKTLKKGDIMIFPQGLLHFQVNSG 154
++ L++GDI P G+ H+ N+G
Sbjct: 131 IRHLREGDIFAMPAGVSHWAYNNG 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,682,432
Number of Sequences: 62578
Number of extensions: 217268
Number of successful extensions: 706
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 32
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)