Query 028365
Match_columns 210
No_of_seqs 220 out of 1556
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:22:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 100.0 7.5E-29 1.6E-33 221.8 20.8 163 36-205 200-362 (367)
2 PLN00212 glutelin; Provisional 99.9 1E-24 2.2E-29 200.3 18.9 147 59-207 322-470 (493)
3 PF00190 Cupin_1: Cupin; Inte 99.9 5.7E-25 1.2E-29 172.8 14.4 134 55-199 3-143 (144)
4 TIGR03404 bicupin_oxalic bicup 99.9 2.3E-24 5E-29 192.9 18.4 151 44-205 32-185 (367)
5 smart00835 Cupin_1 Cupin. This 99.9 4.6E-21 1E-25 150.8 17.6 136 62-199 7-145 (146)
6 COG2140 Thermophilic glucose-6 99.8 6.4E-20 1.4E-24 150.7 12.5 151 46-207 49-201 (209)
7 PLN00212 glutelin; Provisional 99.8 6E-19 1.3E-23 162.3 18.2 140 63-205 59-249 (493)
8 PF07883 Cupin_2: Cupin domain 99.6 2.4E-14 5.2E-19 98.2 9.6 70 89-164 2-71 (71)
9 COG0662 {ManC} Mannose-6-phosp 99.5 1.4E-12 3.1E-17 100.5 12.4 83 83-171 34-116 (127)
10 PRK13290 ectC L-ectoine syntha 99.4 1.7E-12 3.6E-17 100.0 12.3 81 83-172 33-115 (125)
11 COG1917 Uncharacterized conser 99.4 1.3E-12 2.9E-17 100.6 11.4 85 76-166 34-118 (131)
12 PRK04190 glucose-6-phosphate i 99.3 3.8E-11 8.2E-16 98.8 13.6 90 77-167 60-157 (191)
13 TIGR01479 GMP_PMI mannose-1-ph 99.2 1.1E-10 2.3E-15 108.0 12.7 79 83-167 374-452 (468)
14 PRK09943 DNA-binding transcrip 99.2 2.1E-10 4.7E-15 93.5 12.1 76 83-165 105-181 (185)
15 COG3837 Uncharacterized conser 99.2 1.3E-10 2.8E-15 91.6 9.9 83 76-166 35-120 (161)
16 PRK15460 cpsB mannose-1-phosph 99.2 3.1E-10 6.6E-15 105.1 12.6 79 82-166 382-460 (478)
17 PF01050 MannoseP_isomer: Mann 99.2 4.8E-10 1E-14 89.0 11.6 77 83-165 61-137 (151)
18 PRK11171 hypothetical protein; 99.2 1.1E-09 2.4E-14 94.4 14.6 78 82-165 58-136 (266)
19 COG4101 Predicted mannose-6-ph 99.2 3.1E-10 6.7E-15 85.6 9.6 83 84-170 45-128 (142)
20 TIGR03214 ura-cupin putative a 99.1 6.1E-10 1.3E-14 95.7 11.0 73 84-162 178-250 (260)
21 TIGR03214 ura-cupin putative a 99.0 2.6E-09 5.6E-14 91.9 12.1 77 83-165 56-133 (260)
22 PRK11171 hypothetical protein; 99.0 9.4E-09 2E-13 88.7 14.3 72 84-162 183-255 (266)
23 PRK13264 3-hydroxyanthranilate 98.7 6.5E-08 1.4E-12 78.3 9.3 62 89-153 38-99 (177)
24 PF02311 AraC_binding: AraC-li 98.7 1E-07 2.2E-12 71.6 8.8 64 94-164 12-75 (136)
25 PF11699 CENP-C_C: Mif2/CENP-C 98.7 4.8E-07 1E-11 65.1 11.0 72 84-162 11-83 (85)
26 TIGR03037 anthran_nbaC 3-hydro 98.7 2.5E-07 5.5E-12 73.8 10.5 66 93-161 36-101 (159)
27 PF06560 GPI: Glucose-6-phosph 98.7 4.5E-07 9.8E-12 74.0 11.6 86 80-166 45-146 (182)
28 PRK10371 DNA-binding transcrip 98.6 1.8E-07 4E-12 81.8 8.9 62 87-155 28-89 (302)
29 PF02041 Auxin_BP: Auxin bindi 98.6 8.4E-07 1.8E-11 69.6 11.4 88 76-166 37-128 (167)
30 PRK15457 ethanolamine utilizat 98.5 2E-06 4.2E-11 72.3 12.0 70 84-164 156-225 (233)
31 PF03079 ARD: ARD/ARD' family; 98.5 1.9E-06 4E-11 68.9 11.0 71 97-170 84-154 (157)
32 PF12973 Cupin_7: ChrR Cupin-l 98.5 9.2E-07 2E-11 64.0 8.2 81 65-162 8-88 (91)
33 PRK10296 DNA-binding transcrip 98.4 2.4E-06 5.3E-11 73.2 10.4 51 95-152 33-83 (278)
34 PF05523 FdtA: WxcM-like, C-te 98.4 1E-05 2.3E-10 62.7 12.2 99 63-167 12-112 (131)
35 TIGR02451 anti_sig_ChrR anti-s 98.3 2.1E-06 4.6E-11 71.9 8.0 72 85-167 127-198 (215)
36 COG1791 Uncharacterized conser 98.3 7.3E-06 1.6E-10 65.7 9.7 73 98-173 88-160 (181)
37 PF06339 Ectoine_synth: Ectoin 98.3 1.9E-05 4.2E-10 60.3 11.4 85 81-172 31-115 (126)
38 PRK13501 transcriptional activ 98.2 4.2E-06 9.1E-11 72.3 8.3 62 84-154 19-80 (290)
39 TIGR02297 HpaA 4-hydroxyphenyl 98.2 4.1E-06 8.8E-11 71.9 7.7 57 95-157 33-89 (287)
40 PRK13500 transcriptional activ 98.2 8.1E-06 1.8E-10 71.6 9.0 56 93-155 56-111 (312)
41 TIGR02272 gentisate_1_2 gentis 98.2 6.2E-06 1.3E-10 73.3 7.6 75 84-164 80-154 (335)
42 PRK13502 transcriptional activ 98.1 1.4E-05 2.9E-10 68.6 8.7 56 92-154 25-80 (282)
43 COG4297 Uncharacterized protei 98.0 1.6E-05 3.5E-10 61.6 6.8 64 98-165 56-119 (163)
44 PF14499 DUF4437: Domain of un 98.0 1.4E-05 3.1E-10 68.3 6.5 73 83-161 34-106 (251)
45 PF05899 Cupin_3: Protein of u 98.0 4.5E-05 9.7E-10 53.3 7.9 59 85-151 7-65 (74)
46 PRK13503 transcriptional activ 98.0 1.6E-05 3.4E-10 67.8 6.0 53 94-153 24-76 (278)
47 KOG2107 Uncharacterized conser 98.0 1.6E-05 3.5E-10 63.3 5.5 57 97-155 85-141 (179)
48 COG3435 Gentisate 1,2-dioxygen 97.9 2.1E-05 4.6E-10 68.3 6.3 116 43-165 42-166 (351)
49 PF06249 EutQ: Ethanolamine ut 97.8 0.00012 2.5E-09 58.2 8.0 58 85-151 77-134 (152)
50 PF06052 3-HAO: 3-hydroxyanthr 97.7 0.00058 1.3E-08 53.8 10.9 79 87-170 35-113 (151)
51 COG3257 GlxB Uncharacterized p 97.7 0.00027 5.8E-09 59.0 9.4 75 85-165 61-136 (264)
52 TIGR02272 gentisate_1_2 gentis 97.6 0.00018 4E-09 64.0 7.6 86 66-162 232-318 (335)
53 COG3450 Predicted enzyme of th 97.5 0.00039 8.4E-09 52.8 6.4 59 85-151 45-103 (116)
54 COG1898 RfbC dTDP-4-dehydrorha 97.4 0.0033 7.1E-08 51.0 11.8 69 94-162 54-130 (173)
55 COG4766 EutQ Ethanolamine util 97.4 0.0018 3.8E-08 51.2 9.6 66 85-161 100-165 (176)
56 PF00908 dTDP_sugar_isom: dTDP 97.2 0.0046 1E-07 50.3 9.8 69 93-161 51-129 (176)
57 TIGR01221 rmlC dTDP-4-dehydror 97.1 0.024 5.2E-07 46.1 13.2 69 93-161 52-129 (176)
58 COG3435 Gentisate 1,2-dioxygen 97.0 0.0027 5.9E-08 55.4 7.6 91 64-165 241-332 (351)
59 PF05995 CDO_I: Cysteine dioxy 96.8 0.043 9.4E-07 44.4 12.3 82 85-166 75-164 (175)
60 PF13621 Cupin_8: Cupin-like d 96.6 0.018 3.9E-07 47.8 9.5 71 86-157 131-236 (251)
61 PF04209 HgmA: homogentisate 1 96.4 0.039 8.5E-07 50.6 11.0 62 98-165 138-199 (424)
62 PF05118 Asp_Arg_Hydrox: Aspar 96.3 0.03 6.5E-07 44.8 8.5 70 86-161 81-155 (163)
63 PF07385 DUF1498: Protein of u 96.0 0.094 2E-06 44.1 10.0 74 90-165 92-187 (225)
64 PRK10572 DNA-binding transcrip 95.9 0.036 7.8E-07 47.6 7.6 44 106-155 49-92 (290)
65 PF12852 Cupin_6: Cupin 95.8 0.063 1.4E-06 43.3 8.2 43 107-153 36-78 (186)
66 PRK05341 homogentisate 1,2-dio 95.5 0.13 2.9E-06 47.3 10.0 61 98-165 146-208 (438)
67 TIGR01015 hmgA homogentisate 1 95.4 0.15 3.2E-06 46.9 10.0 62 98-165 140-201 (429)
68 PF08007 Cupin_4: Cupin superf 95.3 0.22 4.8E-06 44.0 10.8 68 86-154 114-200 (319)
69 PLN02658 homogentisate 1,2-dio 95.2 0.24 5.3E-06 45.6 10.7 61 98-164 139-200 (435)
70 PRK09685 DNA-binding transcrip 95.1 0.19 4E-06 43.3 9.4 65 85-155 45-114 (302)
71 PF14499 DUF4437: Domain of un 95.1 0.016 3.4E-07 49.8 2.5 75 85-165 171-245 (251)
72 PF13759 2OG-FeII_Oxy_5: Putat 95.0 0.09 1.9E-06 38.4 6.1 75 90-164 5-100 (101)
73 PF02678 Pirin: Pirin; InterP 94.9 0.22 4.7E-06 37.3 8.0 62 95-161 39-103 (107)
74 PRK12335 tellurite resistance 94.7 0.17 3.6E-06 43.9 7.9 62 93-154 19-82 (287)
75 PF06865 DUF1255: Protein of u 94.2 0.7 1.5E-05 33.8 9.1 55 91-152 29-83 (94)
76 PF05726 Pirin_C: Pirin C-term 93.9 0.59 1.3E-05 34.4 8.5 66 88-162 2-67 (104)
77 PRK10579 hypothetical protein; 93.8 1.4 3E-05 32.2 10.0 54 92-152 30-83 (94)
78 COG3822 ABC-type sugar transpo 93.7 0.43 9.4E-06 39.3 7.9 76 89-166 90-187 (225)
79 PF02373 JmjC: JmjC domain, hy 93.6 0.12 2.5E-06 37.9 4.2 29 128-156 79-107 (114)
80 PF07847 DUF1637: Protein of u 93.6 0.42 9E-06 39.7 7.8 87 80-167 39-144 (200)
81 PRK15131 mannose-6-phosphate i 93.6 0.8 1.7E-05 41.8 10.3 58 85-151 321-378 (389)
82 KOG3995 3-hydroxyanthranilate 93.5 0.16 3.5E-06 42.4 5.1 61 93-156 41-101 (279)
83 KOG3706 Uncharacterized conser 93.3 0.045 9.8E-07 50.8 1.8 88 64-152 285-403 (629)
84 PF06172 Cupin_5: Cupin superf 93.3 2.6 5.7E-05 32.9 11.5 100 63-164 13-125 (139)
85 COG3257 GlxB Uncharacterized p 93.1 0.49 1.1E-05 39.9 7.4 71 82-159 179-250 (264)
86 TIGR02466 conserved hypothetic 93.0 0.63 1.4E-05 38.6 8.1 79 87-165 98-197 (201)
87 COG1741 Pirin-related protein 92.7 0.39 8.4E-06 41.9 6.7 60 89-153 48-109 (276)
88 PF14525 AraC_binding_2: AraC- 92.6 1.7 3.7E-05 33.5 9.8 44 106-155 55-98 (172)
89 TIGR00218 manA mannose-6-phosp 92.6 1.3 2.8E-05 38.8 9.9 59 84-151 234-292 (302)
90 COG3806 ChrR Transcriptional a 92.3 0.47 1E-05 39.3 6.2 72 84-166 127-198 (216)
91 PRK00924 5-keto-4-deoxyuronate 92.2 2.2 4.8E-05 37.1 10.6 84 83-169 173-262 (276)
92 PF11142 DUF2917: Protein of u 92.0 0.94 2E-05 30.5 6.5 57 90-152 2-58 (63)
93 COG5553 Predicted metal-depend 91.8 0.82 1.8E-05 36.8 6.9 72 85-158 73-149 (191)
94 COG3508 HmgA Homogentisate 1,2 91.8 2 4.4E-05 38.7 10.0 59 96-161 135-194 (427)
95 PLN02288 mannose-6-phosphate i 91.4 0.72 1.6E-05 42.2 7.1 58 84-146 333-390 (394)
96 PF09313 DUF1971: Domain of un 91.0 1.6 3.5E-05 31.1 7.1 61 95-156 13-76 (82)
97 KOG2757 Mannose-6-phosphate is 89.0 2.7 5.8E-05 38.1 8.4 72 85-164 333-405 (411)
98 PRK11753 DNA-binding transcrip 87.7 6.7 0.00015 31.5 9.6 55 87-142 20-74 (211)
99 PF04962 KduI: KduI/IolB famil 87.4 14 0.00031 31.9 11.8 79 85-168 151-247 (261)
100 COG2850 Uncharacterized conser 87.3 1.3 2.9E-05 40.0 5.5 62 91-153 125-202 (383)
101 PRK00924 5-keto-4-deoxyuronate 86.7 6.9 0.00015 34.1 9.5 52 105-162 72-126 (276)
102 PF00027 cNMP_binding: Cyclic 85.8 2.4 5.2E-05 28.7 5.2 47 91-140 3-51 (91)
103 COG1482 ManA Phosphomannose is 85.0 4.1 8.9E-05 36.1 7.3 59 84-151 241-299 (312)
104 PRK09391 fixK transcriptional 84.7 10 0.00023 31.4 9.5 64 84-148 35-98 (230)
105 smart00100 cNMP Cyclic nucleot 84.5 6.7 0.00015 27.2 7.2 55 88-143 18-72 (120)
106 COG3123 Uncharacterized protei 83.9 4.5 9.7E-05 29.0 5.7 43 105-151 40-82 (94)
107 PRK13918 CRP/FNR family transc 83.5 5.7 0.00012 31.8 7.2 53 89-142 8-62 (202)
108 PHA02984 hypothetical protein; 80.7 11 0.00024 32.7 8.1 52 107-161 92-145 (286)
109 cd00038 CAP_ED effector domain 79.0 9.3 0.0002 26.4 6.2 53 88-141 18-70 (115)
110 PF04962 KduI: KduI/IolB famil 78.4 14 0.0003 31.9 8.1 67 85-161 27-103 (261)
111 PF13640 2OG-FeII_Oxy_3: 2OG-F 76.4 6.5 0.00014 27.9 4.8 64 90-153 4-86 (100)
112 PHA02890 hypothetical protein; 75.8 18 0.00039 31.2 7.9 44 107-152 91-136 (278)
113 PRK03606 ureidoglycolate hydro 74.5 34 0.00074 27.4 8.8 54 98-151 71-128 (162)
114 PRK10402 DNA-binding transcrip 73.3 11 0.00025 30.9 6.1 52 90-142 34-85 (226)
115 KOG2130 Phosphatidylserine-spe 72.7 8 0.00017 34.5 5.1 44 128-171 261-304 (407)
116 KOG2131 Uncharacterized conser 71.2 4.1 9E-05 36.9 3.1 60 95-156 208-294 (427)
117 PRK15186 AraC family transcrip 71.2 17 0.00037 31.8 6.9 46 107-157 39-84 (291)
118 PF04115 Ureidogly_hydro: Urei 71.1 51 0.0011 26.3 9.4 80 84-163 56-143 (165)
119 PHA00672 hypothetical protein 70.2 48 0.001 25.7 8.3 84 68-159 28-113 (152)
120 PF04622 ERG2_Sigma1R: ERG2 an 68.7 15 0.00032 31.0 5.8 52 94-152 110-161 (216)
121 TIGR03697 NtcA_cyano global ni 68.2 14 0.0003 29.1 5.4 36 106-141 11-46 (193)
122 TIGR00218 manA mannose-6-phosp 67.3 3.2 7E-05 36.3 1.6 19 131-149 152-170 (302)
123 PF06719 AraC_N: AraC-type tra 66.1 25 0.00054 27.5 6.4 50 107-162 24-76 (155)
124 COG3542 Uncharacterized conser 65.3 69 0.0015 25.5 13.7 101 91-202 50-159 (162)
125 PLN02868 acyl-CoA thioesterase 64.9 30 0.00065 31.5 7.5 53 88-142 32-84 (413)
126 COG1482 ManA Phosphomannose is 64.0 6.3 0.00014 35.0 2.8 21 131-151 159-179 (312)
127 KOG1417 Homogentisate 1,2-diox 63.2 90 0.0019 27.8 9.6 63 98-166 147-209 (446)
128 COG0664 Crp cAMP-binding prote 62.0 33 0.00072 26.8 6.5 57 87-144 23-79 (214)
129 PRK11161 fumarate/nitrate redu 61.5 48 0.001 27.1 7.6 52 90-142 40-91 (235)
130 PRK10202 ebgC cryptic beta-D-g 61.0 30 0.00066 27.1 6.0 53 99-151 58-127 (149)
131 PRK15131 mannose-6-phosphate i 59.7 8.9 0.00019 35.0 3.1 22 130-151 237-258 (389)
132 KOG4281 Uncharacterized conser 54.2 5.4 0.00012 33.6 0.6 40 83-122 73-112 (236)
133 COG2731 EbgC Beta-galactosidas 52.8 50 0.0011 26.3 5.9 58 98-155 61-137 (154)
134 COG3717 KduI 5-keto 4-deoxyuro 52.4 62 0.0014 27.8 6.7 89 79-170 171-265 (278)
135 COG3718 IolB Uncharacterized e 52.3 1.5E+02 0.0033 25.5 9.2 86 66-155 13-102 (270)
136 PRK09392 ftrB transcriptional 50.8 43 0.00092 27.5 5.6 51 89-141 32-82 (236)
137 PF04074 DUF386: Domain of unk 48.5 1.1E+02 0.0023 23.8 7.2 54 98-151 61-134 (153)
138 PF14801 GCD14_N: tRNA methylt 46.1 49 0.0011 21.7 4.0 36 118-154 11-46 (54)
139 PF13348 Y_phosphatase3C: Tyro 44.9 24 0.00053 23.4 2.7 24 183-206 44-67 (68)
140 PRK05467 Fe(II)-dependent oxyg 42.7 75 0.0016 26.8 5.8 25 131-155 142-166 (226)
141 TIGR00022 uncharacterized prot 42.6 1.4E+02 0.0029 23.0 6.9 25 98-122 61-85 (142)
142 KOG0498 K+-channel ERG and rel 40.0 54 0.0012 32.6 5.1 48 91-140 446-493 (727)
143 PF05962 HutD: HutD; InterPro 39.1 46 0.00099 27.0 3.9 34 105-144 134-167 (184)
144 PF02787 CPSase_L_D3: Carbamoy 38.9 31 0.00068 26.2 2.7 26 182-207 72-97 (123)
145 PLN02288 mannose-6-phosphate i 37.6 26 0.00056 32.1 2.4 20 131-150 252-271 (394)
146 PLN03192 Voltage-dependent pot 36.4 88 0.0019 31.2 6.1 52 87-140 397-448 (823)
147 PRK13395 ureidoglycolate hydro 36.3 2.3E+02 0.005 22.9 8.4 66 98-163 71-141 (171)
148 PF02796 HTH_7: Helix-turn-hel 34.8 59 0.0013 19.8 3.0 29 176-204 15-43 (45)
149 KOG1356 Putative transcription 34.0 16 0.00034 36.6 0.4 54 94-153 764-822 (889)
150 PF13384 HTH_23: Homeodomain-l 33.9 53 0.0012 20.0 2.8 27 181-207 16-42 (50)
151 PF13464 DUF4115: Domain of un 32.7 1.6E+02 0.0034 19.9 7.7 49 112-161 4-52 (77)
152 KOG0501 K+-channel KCNQ [Inorg 31.3 79 0.0017 30.9 4.5 58 85-152 569-626 (971)
153 PRK02290 3-dehydroquinate synt 30.9 2.8E+02 0.0061 25.0 7.8 84 64-152 250-336 (344)
154 COG3717 KduI 5-keto 4-deoxyuro 30.3 3.2E+02 0.0068 23.6 7.5 61 96-162 65-128 (278)
155 KOG2132 Uncharacterized conser 30.3 45 0.00098 29.9 2.6 77 76-153 241-349 (355)
156 TIGR02408 ectoine_ThpD ectoine 30.2 64 0.0014 27.7 3.6 37 132-168 213-251 (277)
157 PF02209 VHP: Villin headpiece 28.3 59 0.0013 19.4 2.1 22 183-204 2-23 (36)
158 PF05721 PhyH: Phytanoyl-CoA d 27.8 84 0.0018 24.3 3.7 27 130-156 180-207 (211)
159 PRK14585 pgaD putative PGA bio 27.6 64 0.0014 25.2 2.8 24 182-205 89-112 (137)
160 smart00153 VHP Villin headpiec 27.0 70 0.0015 19.0 2.3 22 183-204 2-23 (36)
161 PF13994 PgaD: PgaD-like prote 25.4 79 0.0017 24.3 3.0 23 183-205 101-123 (138)
162 PF12937 F-box-like: F-box-lik 25.3 75 0.0016 19.1 2.4 21 182-202 3-24 (47)
163 PF01959 DHQS: 3-dehydroquinat 24.1 4.4E+02 0.0096 23.9 7.8 85 64-153 260-347 (354)
164 PF00325 Crp: Bacterial regula 24.0 1E+02 0.0022 17.8 2.5 25 183-207 3-27 (32)
165 PF01987 AIM24: Mitochondrial 23.8 1.4E+02 0.0031 24.3 4.4 42 109-152 132-173 (215)
166 PRK00364 groES co-chaperonin G 23.5 2.7E+02 0.0059 20.0 5.3 33 126-159 51-83 (95)
167 PF13613 HTH_Tnp_4: Helix-turn 22.5 1E+02 0.0022 19.4 2.6 26 180-205 17-42 (53)
168 COG1741 Pirin-related protein 21.3 5.5E+02 0.012 22.3 10.9 42 77-120 166-207 (276)
169 PRK14584 hmsS hemin storage sy 20.7 1.1E+02 0.0025 24.3 3.0 24 182-205 98-121 (153)
170 KOG0500 Cyclic nucleotide-gate 20.7 2.1E+02 0.0045 27.3 5.1 47 90-140 333-379 (536)
171 KOG2968 Predicted esterase of 20.1 54 0.0012 33.5 1.3 61 78-140 499-560 (1158)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.97 E-value=7.5e-29 Score=221.77 Aligned_cols=163 Identities=20% Similarity=0.244 Sum_probs=142.9
Q ss_pred CCCCCCCCCCCCCceEEecCCCCCCccccCCceEEEeeccccCcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeC
Q 028365 36 GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHG 115 (210)
Q Consensus 36 g~pck~~~~~~~~df~f~~l~~~~~~~~~~gg~~~~~~~~~~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G 115 (210)
..+.++++...++.|+|+ +....+. ...||+++.+++.+||++++ +++++++++||+++++|||+++.||.||++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~~~p~-~~~gG~~~~~~~~~~p~~~~--~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G 275 (367)
T TIGR03404 200 QEAVTGPAGEVPGPFTYH-LSEQKPK-QVPGGTVRIADSTNFPVSKT--IAAAIVTVEPGAMRELHWHPNADEWQYFIQG 275 (367)
T ss_pred cccCcCCCCCCCccEEEE-hhhCCce-ecCCceEEEEChhhccCcce--EEEEEEEECCCCccCCeeCcCCCeEEEEEEE
Confidence 445566677777889999 6665553 67899999999999999886 7999999999999999999999999999999
Q ss_pred EEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEecCCCCCceechHhHHhhcCCHHHHHHhcCCC
Q 028365 116 CITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLD 195 (210)
Q Consensus 116 ~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~s~~pg~~~i~~~~f~s~~p~~vla~~f~~~ 195 (210)
++++++.++ +++..+..+++||+++||+|..|+++|.|+++++++++|++..++.+.++.++ +++|++||+++|+++
T Consensus 276 ~~~~~v~d~-~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l--~~~p~~vl~~~~~~~ 352 (367)
T TIGR03404 276 QARMTVFAA-GGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWL--ALTPPQLVAAHLNLD 352 (367)
T ss_pred EEEEEEEec-CCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHH--hhCCHHHHHHHhCcC
Confidence 999999876 44444569999999999999999999999999999999999888888775544 469999999999999
Q ss_pred HHHHHHHhhh
Q 028365 196 DATVKRLKAI 205 (210)
Q Consensus 196 ~~~v~~l~~~ 205 (210)
++++++|++.
T Consensus 353 ~~~~~~l~~~ 362 (367)
T TIGR03404 353 DEVIDSLKKE 362 (367)
T ss_pred HHHHHhcccc
Confidence 9999999976
No 2
>PLN00212 glutelin; Provisional
Probab=99.93 E-value=1e-24 Score=200.28 Aligned_cols=147 Identities=18% Similarity=0.283 Sum_probs=124.5
Q ss_pred CCccccCCceEEEeeccccCcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCC
Q 028365 59 GNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGD 138 (210)
Q Consensus 59 ~~~~~~~gg~~~~~~~~~~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GD 138 (210)
.+++++.+|+++.+++.+||+|++++|++.+++|.||+|.+||||++|+|++||++|+++++++++++.+++...|++||
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd 401 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ 401 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence 35668999999999999999999999999999999999999999999999999999999999999866889999999999
Q ss_pred EEEECCCCeeEEEeCCCCCEEEEEEecCCCCCceec--hHhHHhhcCCHHHHHHhcCCCHHHHHHHhhhhC
Q 028365 139 IMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQIT--DFALFANNLSSQLVEQTTFLDDATVKRLKAILG 207 (210)
Q Consensus 139 v~~~P~g~~H~~~N~g~~~a~~~~~f~s~~pg~~~i--~~~~f~s~~p~~vla~~f~~~~~~v~~l~~~~~ 207 (210)
+++||+|.+|..+. +.+...+++...+.++-...+ ..++|. .+|.+||+++|+++.+++++|+.++.
T Consensus 402 vfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~-alp~eVla~Af~is~eea~~lk~n~~ 470 (493)
T PLN00212 402 LLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFR-ALPVDVIANAYRISREEARRLKNNRG 470 (493)
T ss_pred EEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHH-hCCHHHHHHHcCCCHHHHHHHHhccc
Confidence 99999999997765 455555554333333211222 146777 69999999999999999999998753
No 3
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.93 E-value=5.7e-25 Score=172.78 Aligned_cols=134 Identities=28% Similarity=0.481 Sum_probs=111.5
Q ss_pred CCCCCCccccCCceEEEeeccccCcccCcc-eEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCC----eE
Q 028365 55 LGVAGNTTSIINAAVTPAFVAQFPAVNGLG-LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSAN----TV 129 (210)
Q Consensus 55 l~~~~~~~~~~gg~~~~~~~~~~P~l~~~g-is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~----~~ 129 (210)
+..+.+..+..+|+++.++..++|++.+.. +.+.++.++||++++|||| ++.|+.||++|+++++++.+++. +.
T Consensus 3 ~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~ 81 (144)
T PF00190_consen 3 LREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRD 81 (144)
T ss_dssp TCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEE
T ss_pred CCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCcccccee
Confidence 555666668899999999999999666544 5555677799999999999 99999999999999999997321 34
Q ss_pred EEEE--EcCCCEEEECCCCeeEEEeCCCCCEEEEEEecCCCCCceechHhHHhhcCCHHHHHHhcCCCHHHH
Q 028365 130 YVKT--LKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATV 199 (210)
Q Consensus 130 ~~~~--l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~s~~pg~~~i~~~~f~s~~p~~vla~~f~~~~~~v 199 (210)
...+ +++||++++|+|.+||+.|.++++...+.+|++.++... +|++|++++|++++++.
T Consensus 82 ~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~----------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 82 FSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ----------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE----------SSHHHHHHHEESSHHHH
T ss_pred eeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc----------CCcHHHHHhcCCCcCcC
Confidence 4445 999999999999999999999888988888987777654 89999999999999875
No 4
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.93 E-value=2.3e-24 Score=192.92 Aligned_cols=151 Identities=17% Similarity=0.226 Sum_probs=126.5
Q ss_pred CCCCCceEEecCCCCCCccccCCceEEEeeccccCcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEe
Q 028365 44 MVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFIS 123 (210)
Q Consensus 44 ~~~~~df~f~~l~~~~~~~~~~gg~~~~~~~~~~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~ 123 (210)
.+....|.|+ +.+.. ...||+++.++..+||++++ +++.++++.||+++++|||. +.||+||++|++++++++
T Consensus 32 ~~p~~~~~~~-~~~~~---~~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d 104 (367)
T TIGR03404 32 SVPNLKWSFS-DSHNR---LENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVD 104 (367)
T ss_pred ccccceeeec-cccCc---cccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEc
Confidence 3444457777 55543 34799999999999999988 69999999999999999995 689999999999999988
Q ss_pred cCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEecCCC---CCceechHhHHhhcCCHHHHHHhcCCCHHHHH
Q 028365 124 SSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPN---PGLQITDFALFANNLSSQLVEQTTFLDDATVK 200 (210)
Q Consensus 124 ~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~s~~---pg~~~i~~~~f~s~~p~~vla~~f~~~~~~v~ 200 (210)
+ +++.+.+.|++||+++||+|.+|+++|.+ +.+.++.+|++.. ++.+.+..+ ++ .+|++||+++|++++++++
T Consensus 105 ~-~g~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~-l~-~~p~~Vla~~f~l~~~~~~ 180 (367)
T TIGR03404 105 E-NGRNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDW-LA-HTPKDVLAKNFGVPESAFD 180 (367)
T ss_pred C-CCcEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHH-HH-hCCHHHHHHHhCCCHHHHH
Confidence 6 67888778999999999999999999985 5677888887654 345556554 45 5999999999999999999
Q ss_pred HHhhh
Q 028365 201 RLKAI 205 (210)
Q Consensus 201 ~l~~~ 205 (210)
+|++.
T Consensus 181 ~l~~~ 185 (367)
T TIGR03404 181 NLPLK 185 (367)
T ss_pred hcccc
Confidence 99875
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.88 E-value=4.6e-21 Score=150.84 Aligned_cols=136 Identities=35% Similarity=0.567 Sum_probs=115.9
Q ss_pred cccCCceEEEeeccccCcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEE
Q 028365 62 TSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMI 141 (210)
Q Consensus 62 ~~~~gg~~~~~~~~~~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~ 141 (210)
.+..||+++.++...+|.+++.++.+.+++++||+..++|||+++.|++||++|++.+.+.++.+++.+...+++||+++
T Consensus 7 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 7 FSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred ccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 36789999999999999999999999999999999999999987899999999999999866423455667999999999
Q ss_pred ECCCCeeEEEeCCCCCEEEEEEecCCCCCceec---hHhHHhhcCCHHHHHHhcCCCHHHH
Q 028365 142 FPQGLLHFQVNSGADGALGFVSFNSPNPGLQIT---DFALFANNLSSQLVEQTTFLDDATV 199 (210)
Q Consensus 142 ~P~g~~H~~~N~g~~~a~~~~~f~s~~pg~~~i---~~~~f~s~~p~~vla~~f~~~~~~v 199 (210)
||+|..|+..|.+++++.++ ++.++++..-.. ..++|. ++++++++++|+++++++
T Consensus 87 ip~g~~H~~~n~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 87 VPQGHPHFQVNSGDENLEFV-AFNTNDPNRRFFLAGRNSVLR-GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred ECCCCEEEEEcCCCCCEEEE-EEecCCCCceeEeecccchhh-cCCHHHHHHHhCcChHHc
Confidence 99999999999999999988 466667654321 134554 699999999999999875
No 6
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.83 E-value=6.4e-20 Score=150.69 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=127.2
Q ss_pred CCCceEEecCCCCCCccccCCceEEEeeccccCcccCcceEEEEEEEeCCccccceecCCCCE--EEEEEeCEEEEEEEe
Q 028365 46 TADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASE--ILLVVHGCITAGFIS 123 (210)
Q Consensus 46 ~~~df~f~~l~~~~~~~~~~gg~~~~~~~~~~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~E--i~yVl~G~~~v~vv~ 123 (210)
..++|+|. +....+. ..||.++......+|+. ....+.+.||++++.||||+++| |.||++|++++.+.+
T Consensus 49 ~~~~~~ye-l~~~~~~--~~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYE-LLESEPG--ERGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEE-eeccccc--ccCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 56788888 5444332 33999999999999998 44567899999999999999999 999999999999988
Q ss_pred cCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEecCCCCCceechHhHHhhcCCHHHHHHhcCCCHHHHHHHh
Q 028365 124 SSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLK 203 (210)
Q Consensus 124 ~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~s~~pg~~~i~~~~f~s~~p~~vla~~f~~~~~~v~~l~ 203 (210)
+ +++..+..+++||++++|++..|+..|+|+++++++.+|............ |...++..+++..++.+....+..+
T Consensus 121 ~-~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~--~~~~~~~~~~~~~~~~~~~~~D~p~ 197 (209)
T COG2140 121 P-EGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIA--WLGGMPPVLVENGLNKNPKYVDVPR 197 (209)
T ss_pred C-CCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeee--hhccCCceeeccccccCcccccCcc
Confidence 8 578888899999999999999999999999999999999876665555544 4445889999999999988888877
Q ss_pred hhhC
Q 028365 204 AILG 207 (210)
Q Consensus 204 ~~~~ 207 (210)
.++.
T Consensus 198 ~~~~ 201 (209)
T COG2140 198 IKFA 201 (209)
T ss_pred cccc
Confidence 6655
No 7
>PLN00212 glutelin; Provisional
Probab=99.82 E-value=6e-19 Score=162.26 Aligned_cols=140 Identities=14% Similarity=0.256 Sum_probs=113.7
Q ss_pred ccCCceEEEeeccccCcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeE-------------
Q 028365 63 SIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTV------------- 129 (210)
Q Consensus 63 ~~~gg~~~~~~~~~~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~------------- 129 (210)
...||.+-.++ .+-+.|...|+++.|++++|++++.||+| ++.+++||++|++.++++.|.-.++
T Consensus 59 ~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~ 136 (493)
T PLN00212 59 RSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQ 136 (493)
T ss_pred cccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccc
Confidence 55677555555 67899999999999999999999999999 8999999999999999997510011
Q ss_pred -----------EEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEecCCCC------Cc--eec----------------
Q 028365 130 -----------YVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNP------GL--QIT---------------- 174 (210)
Q Consensus 130 -----------~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~s~~p------g~--~~i---------------- 174 (210)
....|++||+++||+|++||+.|.|+++++++.+++..++ +. +.+
T Consensus 137 ~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~ 216 (493)
T PLN00212 137 SQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIE 216 (493)
T ss_pred ccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCcccccccccccc
Confidence 1248999999999999999999999999988887764442 11 111
Q ss_pred ---hHhHHhhcCCHHHHHHhcCCCHHHHHHHhhh
Q 028365 175 ---DFALFANNLSSQLVEQTTFLDDATVKRLKAI 205 (210)
Q Consensus 175 ---~~~~f~s~~p~~vla~~f~~~~~~v~~l~~~ 205 (210)
+.++|. ++.+++|++||+++.++++||...
T Consensus 217 ~~~~~nifs-GF~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 217 QHSGQNIFS-GFSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred ccccCchhh-cCCHHHHHHHHCCCHHHHHHHhcc
Confidence 123665 799999999999999999999854
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.57 E-value=2.4e-14 Score=98.19 Aligned_cols=70 Identities=33% Similarity=0.487 Sum_probs=64.5
Q ss_pred EEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEe
Q 028365 89 RLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSF 164 (210)
Q Consensus 89 ~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f 164 (210)
+++++||+..++|+|+...|++||++|++++.+ +++.+ .+++||.+++|++..|...|.+++++.++.+|
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~----~~~~~--~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV----DGERV--ELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE----TTEEE--EEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE----ccEEe--EccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 578999999999999875599999999999997 78856 99999999999999999999999999999875
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.4e-12 Score=100.47 Aligned_cols=83 Identities=24% Similarity=0.266 Sum_probs=74.3
Q ss_pred cceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEE
Q 028365 83 LGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFV 162 (210)
Q Consensus 83 ~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~ 162 (210)
...+..++.+.||+...+|.|.+.+|++||++|++.+.+ +++.+ .|++||++++|+|..|.+.|.|..++.++.
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~----~~~~~--~v~~gd~~~iP~g~~H~~~N~G~~~L~lie 107 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI----GGEEV--EVKAGDSVYIPAGTPHRVRNTGKIPLVLIE 107 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE----CCEEE--EecCCCEEEECCCCcEEEEcCCCcceEEEE
Confidence 457889999999999888888888999999999999999 88866 999999999999999999999999999998
Q ss_pred EecCCCCCc
Q 028365 163 SFNSPNPGL 171 (210)
Q Consensus 163 ~f~s~~pg~ 171 (210)
+-.....+.
T Consensus 108 i~~p~~~~e 116 (127)
T COG0662 108 VQSPPYLGE 116 (127)
T ss_pred EecCCcCCC
Confidence 876555443
No 10
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.45 E-value=1.7e-12 Score=100.05 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=71.8
Q ss_pred cceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEE-EEecCC-CeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEE
Q 028365 83 LGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAG-FISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALG 160 (210)
Q Consensus 83 ~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~-vv~~~~-~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~ 160 (210)
.++++.+++++||+..+.|+|+. .|++||++|++++. + + ++.+ .|++||++++|++..|.+.|. +++.+
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i----~~g~~~--~L~aGD~i~~~~~~~H~~~N~--e~~~~ 103 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDL----ATGEVH--PIRPGTMYALDKHDRHYLRAG--EDMRL 103 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEc----CCCEEE--EeCCCeEEEECCCCcEEEEcC--CCEEE
Confidence 45788999999999999999976 69999999999999 6 4 7866 999999999999999999996 89999
Q ss_pred EEEecCCCCCce
Q 028365 161 FVSFNSPNPGLQ 172 (210)
Q Consensus 161 ~~~f~s~~pg~~ 172 (210)
+++++..-+|..
T Consensus 104 l~v~tP~~~~~~ 115 (125)
T PRK13290 104 VCVFNPPLTGRE 115 (125)
T ss_pred EEEECCCCCCcc
Confidence 999987666654
No 11
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.44 E-value=1.3e-12 Score=100.64 Aligned_cols=85 Identities=28% Similarity=0.456 Sum_probs=72.7
Q ss_pred ccCcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCC
Q 028365 76 QFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGA 155 (210)
Q Consensus 76 ~~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~ 155 (210)
..+...+..+.+.++.++||+..++|.||...+.+||++|++++++ +++.+ .+++||++++|+|..|+..|.++
T Consensus 34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~----~g~~~--~l~~Gd~i~ip~g~~H~~~a~~~ 107 (131)
T COG1917 34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL----EGEKK--ELKAGDVIIIPPGVVHGLKAVED 107 (131)
T ss_pred eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEe----cCCce--EecCCCEEEECCCCeeeeccCCC
Confidence 4444456678899999999999999999855899999999999998 67755 99999999999999999999998
Q ss_pred CCEEEEEEecC
Q 028365 156 DGALGFVSFNS 166 (210)
Q Consensus 156 ~~a~~~~~f~s 166 (210)
+....++++..
T Consensus 108 ~~~~~l~v~~~ 118 (131)
T COG1917 108 EPMVLLLVFPL 118 (131)
T ss_pred CceeEEEEeee
Confidence 87566666654
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.33 E-value=3.8e-11 Score=98.75 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=74.1
Q ss_pred cCcccCcceEEEEEEEeCCcc------ccceecCCC--CEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCee
Q 028365 77 FPAVNGLGLSLARLDLAKGGV------IPIHTHPAA--SEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLH 148 (210)
Q Consensus 77 ~P~l~~~gis~~~v~l~pgg~------~~pH~Hp~a--~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H 148 (210)
.|..+..++.+....++||.. .+.|+|+.. .|+.||++|++.+.+-+. +++.....+++||+++||+|..|
T Consensus 60 ~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~-~G~~~~~~v~pGd~v~IPpg~~H 138 (191)
T PRK04190 60 EPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDP-EGEARWIEMEPGTVVYVPPYWAH 138 (191)
T ss_pred cCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecC-CCcEEEEEECCCCEEEECCCCcE
Confidence 334555678999999999995 567999754 599999999999998544 33334559999999999999999
Q ss_pred EEEeCCCCCEEEEEEecCC
Q 028365 149 FQVNSGADGALGFVSFNSP 167 (210)
Q Consensus 149 ~~~N~g~~~a~~~~~f~s~ 167 (210)
...|.|++++++++++...
T Consensus 139 ~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 139 RSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EeEECCCCCEEEEEEEcCC
Confidence 9999999999999988643
No 13
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.23 E-value=1.1e-10 Score=108.03 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=72.2
Q ss_pred cceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEE
Q 028365 83 LGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFV 162 (210)
Q Consensus 83 ~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~ 162 (210)
-++.+.+++++||+..+.|+|+...|.+||++|++++.+ +++.+ .|++||++++|+|..|.+.|.|++++.+++
T Consensus 374 ~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~----dg~~~--~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~ 447 (468)
T TIGR01479 374 DRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI----GDETL--LLTENESTYIPLGVIHRLENPGKIPLELIE 447 (468)
T ss_pred CCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE----CCEEE--EecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 357889999999998888998888999999999999998 88866 999999999999999999999999999999
Q ss_pred EecCC
Q 028365 163 SFNSP 167 (210)
Q Consensus 163 ~f~s~ 167 (210)
+....
T Consensus 448 v~~~~ 452 (468)
T TIGR01479 448 VQSGS 452 (468)
T ss_pred EEcCC
Confidence 87643
No 14
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.21 E-value=2.1e-10 Score=93.46 Aligned_cols=76 Identities=20% Similarity=0.152 Sum_probs=65.8
Q ss_pred cceEEEEEEEeCCccc-cceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEE
Q 028365 83 LGLSLARLDLAKGGVI-PIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGF 161 (210)
Q Consensus 83 ~gis~~~v~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~ 161 (210)
..+.+....++||+.. +.|+|+. .|++||++|++.+.+ +++.+ .|++||.++||.+.+|.+.|.+++++.++
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~~-~E~~~Vl~G~~~~~~----~~~~~--~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l 177 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQG-EEIGTVLEGEIVLTI----NGQDY--HLVAGQSYAINTGIPHSFSNTSAGICRII 177 (185)
T ss_pred CeeEEEEEEccCCCCcccccccCC-cEEEEEEEeEEEEEE----CCEEE--EecCCCEEEEcCCCCeeeeCCCCCCeEEE
Confidence 3456777789999964 5777864 999999999999998 78866 99999999999999999999999999998
Q ss_pred EEec
Q 028365 162 VSFN 165 (210)
Q Consensus 162 ~~f~ 165 (210)
++..
T Consensus 178 ~~~~ 181 (185)
T PRK09943 178 SAHT 181 (185)
T ss_pred EEeC
Confidence 8754
No 15
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.20 E-value=1.3e-10 Score=91.57 Aligned_cols=83 Identities=20% Similarity=0.152 Sum_probs=70.3
Q ss_pred ccCcccCcceEEEEEEEeCCcc-ccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCC--CeeEEEe
Q 028365 76 QFPAVNGLGLSLARLDLAKGGV-IPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQG--LLHFQVN 152 (210)
Q Consensus 76 ~~P~l~~~gis~~~v~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g--~~H~~~N 152 (210)
.+-+|+..|+ ....++||+. ...|||...+|++||++|++.+.+ ++..+ .|+|||++-||+| ..|...|
T Consensus 35 ~~~Gl~~fGv--n~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~----d~~e~--~lrpGD~~gFpAG~~~aHhliN 106 (161)
T COG3837 35 DALGLKRFGV--NLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE----DGGET--RLRPGDSAGFPAGVGNAHHLIN 106 (161)
T ss_pred hhcChhhccc--ceEEeCCCCccccccccccCceEEEEEcCceEEEE----CCeeE--EecCCceeeccCCCcceeEEee
Confidence 4456766544 4556799995 899999999999999999999988 77756 9999999999999 8999999
Q ss_pred CCCCCEEEEEEecC
Q 028365 153 SGADGALGFVSFNS 166 (210)
Q Consensus 153 ~g~~~a~~~~~f~s 166 (210)
.++..++.+++=+.
T Consensus 107 ~s~~~~~yL~vG~r 120 (161)
T COG3837 107 RSDVILRYLEVGTR 120 (161)
T ss_pred cCCceEEEEEeccc
Confidence 99999998876553
No 16
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.17 E-value=3.1e-10 Score=105.15 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=71.1
Q ss_pred CcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEE
Q 028365 82 GLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGF 161 (210)
Q Consensus 82 ~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~ 161 (210)
+.++.+.+++++||+....|+|....|..||++|++++.+ +++.+ .|++||.++||+|.+|.+.|.|++++.++
T Consensus 382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i----dg~~~--~L~~GDSi~ip~g~~H~~~N~g~~~l~iI 455 (478)
T PRK15460 382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI----DGDIK--LLGENESIYIPLGATHCLENPGKIPLDLI 455 (478)
T ss_pred CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE----CCEEE--EecCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence 3457889999999998777888777899999999999999 88866 99999999999999999999999999999
Q ss_pred EEecC
Q 028365 162 VSFNS 166 (210)
Q Consensus 162 ~~f~s 166 (210)
++...
T Consensus 456 ~V~~g 460 (478)
T PRK15460 456 EVRSG 460 (478)
T ss_pred EEEcC
Confidence 88654
No 17
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.16 E-value=4.8e-10 Score=89.03 Aligned_cols=77 Identities=25% Similarity=0.328 Sum_probs=70.2
Q ss_pred cceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEE
Q 028365 83 LGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFV 162 (210)
Q Consensus 83 ~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~ 162 (210)
-+...-++.+.||....+|.|....|..+|++|++.+.+ +++.+ .+++||.++||+|..|.+.|.|+.++.++.
T Consensus 61 ~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~----~~~~~--~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IE 134 (151)
T PF01050_consen 61 EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL----DDEEF--TLKEGDSVYIPRGAKHRIENPGKTPLEIIE 134 (151)
T ss_pred CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE----CCEEE--EEcCCCEEEECCCCEEEEECCCCcCcEEEE
Confidence 356788999999999999999888999999999999998 78866 999999999999999999999999999987
Q ss_pred Eec
Q 028365 163 SFN 165 (210)
Q Consensus 163 ~f~ 165 (210)
+=.
T Consensus 135 Vq~ 137 (151)
T PF01050_consen 135 VQT 137 (151)
T ss_pred Eec
Confidence 543
No 18
>PRK11171 hypothetical protein; Provisional
Probab=99.16 E-value=1.1e-09 Score=94.45 Aligned_cols=78 Identities=24% Similarity=0.235 Sum_probs=68.9
Q ss_pred CcceEEEEEEEeCCccccceecC-CCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEE
Q 028365 82 GLGLSLARLDLAKGGVIPIHTHP-AASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALG 160 (210)
Q Consensus 82 ~~gis~~~v~l~pgg~~~pH~Hp-~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~ 160 (210)
+..+.+.+++++||+....|+|+ ...|++||++|++++.+ +++.+ .|++||.+++|++..|.+.|.+++++.+
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~----~g~~~--~L~~GDsi~~p~~~~H~~~N~g~~~a~~ 131 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL----EGKTH--ALSEGGYAYLPPGSDWTLRNAGAEDARF 131 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE----CCEEE--EECCCCEEEECCCCCEEEEECCCCCEEE
Confidence 44588999999999987777775 45899999999999998 78866 9999999999999999999999999999
Q ss_pred EEEec
Q 028365 161 FVSFN 165 (210)
Q Consensus 161 ~~~f~ 165 (210)
+++..
T Consensus 132 l~v~~ 136 (266)
T PRK11171 132 HWIRK 136 (266)
T ss_pred EEEEc
Confidence 88754
No 19
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=3.1e-10 Score=85.56 Aligned_cols=83 Identities=19% Similarity=0.351 Sum_probs=72.5
Q ss_pred ceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCe-EEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEE
Q 028365 84 GLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANT-VYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFV 162 (210)
Q Consensus 84 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~-~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~ 162 (210)
+|-+..++++||+....|.|.+-.-.+||++|+..+++ +++ ++..+.++||++|||+|++|.-.|.+++++..+.
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~----G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vI 120 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWY----GNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVI 120 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeee----ccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEE
Confidence 47888899999999999999887778999999999998 554 3466899999999999999999999999999888
Q ss_pred EecCCCCC
Q 028365 163 SFNSPNPG 170 (210)
Q Consensus 163 ~f~s~~pg 170 (210)
+-++.++.
T Consensus 121 aRsDp~~~ 128 (142)
T COG4101 121 ARSDPNPQ 128 (142)
T ss_pred EccCCCCC
Confidence 77765553
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.11 E-value=6.1e-10 Score=95.75 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=64.6
Q ss_pred ceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEE
Q 028365 84 GLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFV 162 (210)
Q Consensus 84 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~ 162 (210)
++.+.+++++||+..+.|.|....|..||++|++.+.+ +++.+ .+++||++++|++.+|+..|.|+++..+|.
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~----~g~~~--~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ 250 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL----DNNWV--PVEAGDYIWMGAYCPQACYAGGRGEFRYLL 250 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE----CCEEE--EecCCCEEEECCCCCEEEEecCCCcEEEEE
Confidence 57888899999999986444456899999999999998 88866 999999999999999999999999998874
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.05 E-value=2.6e-09 Score=91.86 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=66.9
Q ss_pred cceEEEEEEEeCCcc-ccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEE
Q 028365 83 LGLSLARLDLAKGGV-IPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGF 161 (210)
Q Consensus 83 ~gis~~~v~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~ 161 (210)
..+.+..++++||+- ..+|+|+...|++||++|++++.+ +++.+ .|++||.+++|++..|.+.|.+++++.++
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~----~g~~~--~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l 129 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA----EGETH--ELREGGYAYLPPGSKWTLANAQAEDARFF 129 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE----CCEEE--EECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 347889999999875 456677766899999999999998 78866 99999999999999999999999999998
Q ss_pred EEec
Q 028365 162 VSFN 165 (210)
Q Consensus 162 ~~f~ 165 (210)
++-+
T Consensus 130 ~v~k 133 (260)
T TIGR03214 130 LYKK 133 (260)
T ss_pred EEEe
Confidence 7653
No 22
>PRK11171 hypothetical protein; Provisional
Probab=99.02 E-value=9.4e-09 Score=88.68 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=65.1
Q ss_pred ceEEEEEEEeCCccccce-ecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEE
Q 028365 84 GLSLARLDLAKGGVIPIH-THPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFV 162 (210)
Q Consensus 84 gis~~~v~l~pgg~~~pH-~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~ 162 (210)
++.+.+++++||+..+.| +| ...|.+||++|++++.+ +++.+ .|++||++.++.+..|+++|.|+++++++.
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~----~~~~~--~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~ 255 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRL----NNDWV--EVEAGDFIWMRAYCPQACYAGGPGPFRYLL 255 (266)
T ss_pred CcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEE----CCEEE--EeCCCCEEEECCCCCEEEECCCCCcEEEEE
Confidence 368899999999998885 56 56899999999999998 88866 999999999999999999999999998875
No 23
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.75 E-value=6.5e-08 Score=78.30 Aligned_cols=62 Identities=11% Similarity=0.194 Sum_probs=51.4
Q ss_pred EEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeC
Q 028365 89 RLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNS 153 (210)
Q Consensus 89 ~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~ 153 (210)
++.=.||....+|+|+ ..|++|+++|++.+.+++ +++.....|++||++++|+|+.|..+..
T Consensus 38 mvvgGpn~r~d~H~~~-tdE~FyqleG~~~l~v~d--~g~~~~v~L~eGd~fllP~gvpHsP~r~ 99 (177)
T PRK13264 38 MVVGGPNARTDFHYDP-GEEFFYQLEGDMYLKVQE--DGKRRDVPIREGEMFLLPPHVPHSPQRE 99 (177)
T ss_pred EEEccCCcccccccCC-CceEEEEECCeEEEEEEc--CCceeeEEECCCCEEEeCCCCCcCCccC
Confidence 3434677788999997 599999999999999987 4543455999999999999999988763
No 24
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.71 E-value=1e-07 Score=71.57 Aligned_cols=64 Identities=25% Similarity=0.296 Sum_probs=47.4
Q ss_pred CCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEe
Q 028365 94 KGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSF 164 (210)
Q Consensus 94 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f 164 (210)
++...++|||+ ..|+.||++|++.+.+ +++.+ .+++||++++|+|.+|.....++++...+.+.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~----~~~~~--~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHI----DGQEY--PLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEE----TTEEE--EE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEE----CCEEE--EEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 45567999997 5999999999999998 88977 99999999999999999988776666655444
No 25
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.67 E-value=4.8e-07 Score=65.12 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=55.0
Q ss_pred ceEEEEEEEeCCccc-cceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEE
Q 028365 84 GLSLARLDLAKGGVI-PIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFV 162 (210)
Q Consensus 84 gis~~~v~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~ 162 (210)
.++...++|+|++.- +-+.+ +..-++||++|.+++++ .+..+ .+.+|+++++|+|-.-.++|.++++++++-
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~-~~~~vF~V~~G~v~Vti----~~~~f--~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF 83 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSR-DNTMVFYVIKGKVEVTI----HETSF--VVTKGGSFQVPRGNYYSIKNIGNEEAKLFF 83 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE---SEEEEEEEEESEEEEEE----TTEEE--EEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred CceeEEEEeCCCCccCCcccC-CcEEEEEEEeCEEEEEE----cCcEE--EEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence 368889999999974 55555 55888999999999999 77866 999999999999999999999999998763
No 26
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.67 E-value=2.5e-07 Score=73.76 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=51.3
Q ss_pred eCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEE
Q 028365 93 AKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGF 161 (210)
Q Consensus 93 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~ 161 (210)
.||....+|.|+ ..|++|+++|++.+.+.+ +++.....|++||++++|+|+.|.....++....++
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d--~g~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvI 101 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTE--EGKREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVI 101 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEc--CCcEEEEEECCCCEEEeCCCCCcccccCCCcEEEEE
Confidence 555567789986 699999999999999876 454345599999999999999998877544333333
No 27
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.65 E-value=4.5e-07 Score=74.01 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=56.6
Q ss_pred ccCcceEEEEEEEeCCcc------ccceecCC------CCEEEEEEeCEEEEEEEecCCC----eEEEEEEcCCCEEEEC
Q 028365 80 VNGLGLSLARLDLAKGGV------IPIHTHPA------ASEILLVVHGCITAGFISSSAN----TVYVKTLKKGDIMIFP 143 (210)
Q Consensus 80 l~~~gis~~~v~l~pgg~------~~pH~Hp~------a~Ei~yVl~G~~~v~vv~~~~~----~~~~~~l~~GDv~~~P 143 (210)
+...++......+.||.+ ..=|+|+. ..|+.+|++|++.+-+-+. ++ +.+...+++||+++||
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~-~~~~~~~~~~v~~~~G~~v~IP 123 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKE-EGDDVGDVIAVEAKPGDVVYIP 123 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-T-TS-----EEEEEE-TTEEEEE-
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEec-CCCcceeEEEEEeCCCCEEEEC
Confidence 344457777788888764 35699998 7999999999999998776 45 6667799999999999
Q ss_pred CCCeeEEEeCCCCCEEEEEEecC
Q 028365 144 QGLLHFQVNSGADGALGFVSFNS 166 (210)
Q Consensus 144 ~g~~H~~~N~g~~~a~~~~~f~s 166 (210)
++..|...|+|++++++.....+
T Consensus 124 p~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 124 PGYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp TT-EEEEEE-SSS-EEEEEEEET
T ss_pred CCceEEEEECCCCcEEEEEEEec
Confidence 99999999999999998877763
No 28
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.61 E-value=1.8e-07 Score=81.80 Aligned_cols=62 Identities=18% Similarity=0.108 Sum_probs=52.1
Q ss_pred EEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCC
Q 028365 87 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGA 155 (210)
Q Consensus 87 ~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~ 155 (210)
.+...-+|..|.++|||.+ .|+.|+++|++.+.+ +++.+ .+++||+++++.|.+|.....++
T Consensus 28 ~~~~~~~~~~m~~~HwH~e-~Ei~yv~~G~~~~~i----~g~~~--~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 28 LEIEFRPPHIMPTSHWHGQ-VEVNVPFDGDVEYLI----NNEKV--QINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred eEEEeeCCCCCCCCCcccc-EEEEEecCCcEEEEE----CCEEE--EEcCCcEEEEecCCcccccccCC
Confidence 3334556778899999965 999999999999998 88977 99999999999999998765443
No 29
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.60 E-value=8.4e-07 Score=69.60 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=54.8
Q ss_pred ccCcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecC---CCeEEEEEEcCCCEEEECCCCeeEEEe
Q 028365 76 QFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSS---ANTVYVKTLKKGDIMIFPQGLLHFQVN 152 (210)
Q Consensus 76 ~~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~---~~~~~~~~l~~GDv~~~P~g~~H~~~N 152 (210)
-.-+++. +.+.+-++.||...|+|-| ...|+++|++|+++..+.... .|+.....+.+++.+.||.+..|.+.|
T Consensus 37 ~~hGmke--vEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~N 113 (167)
T PF02041_consen 37 LLHGMKE--VEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWN 113 (167)
T ss_dssp HHH--SS--EEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE-
T ss_pred hhcCcee--eeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeec
Confidence 4456665 6888889999999999999 469999999999999886542 144445599999999999999999999
Q ss_pred CCC-CCEEEEEEecC
Q 028365 153 SGA-DGALGFVSFNS 166 (210)
Q Consensus 153 ~g~-~~a~~~~~f~s 166 (210)
++. |++.++++++.
T Consensus 114 T~e~eDlqvlViiSr 128 (167)
T PF02041_consen 114 TNEHEDLQVLVIISR 128 (167)
T ss_dssp --SSS-EEEEEEEES
T ss_pred CCCCcceEEEEEecC
Confidence 994 88888887774
No 30
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.51 E-value=2e-06 Score=72.32 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=51.6
Q ss_pred ceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEE
Q 028365 84 GLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVS 163 (210)
Q Consensus 84 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~ 163 (210)
.|++..+.+.. ...+ ||.+..|+.||++|++++.+ +++.+ .+++||+++||+|..|.+.+.+ .+.++.+
T Consensus 156 ~m~aGf~~~~~-~sf~--wtl~~dEi~YVLEGe~~l~I----dG~t~--~l~pGDvlfIPkGs~~hf~tp~--~aRflyV 224 (233)
T PRK15457 156 SMAAGFMQWEN-AFFP--WTLNYDEIDMVLEGELHVRH----EGETM--IAKAGDVMFIPKGSSIEFGTPS--SVRFLYV 224 (233)
T ss_pred ceeeEEEEEec-Cccc--eeccceEEEEEEEeEEEEEE----CCEEE--EeCCCcEEEECCCCeEEecCCC--CeeEEEE
Confidence 35666666664 3334 66667899999999999999 88966 9999999999999995444433 5555443
Q ss_pred e
Q 028365 164 F 164 (210)
Q Consensus 164 f 164 (210)
.
T Consensus 225 ~ 225 (233)
T PRK15457 225 A 225 (233)
T ss_pred E
Confidence 3
No 31
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.49 E-value=1.9e-06 Score=68.92 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=51.2
Q ss_pred cccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEecCCCCC
Q 028365 97 VIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPG 170 (210)
Q Consensus 97 ~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~s~~pg 170 (210)
+...|.|.+ .|+-|+++|++.+.+.+. +++..+..+++||.+++|+|+.|++.-.......++=.|. ..+|
T Consensus 84 f~~EH~H~d-eEvR~i~~G~g~Fdvr~~-~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~-~~~g 154 (157)
T PF03079_consen 84 FFEEHTHED-EEVRYIVDGSGYFDVRDG-DDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK-DEPG 154 (157)
T ss_dssp HCS-EEESS--EEEEEEECEEEEEEE-T-TCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES-SCGG
T ss_pred hheeEecCh-heEEEEeCcEEEEEEEcC-CCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec-CCCC
Confidence 467999976 999999999999999876 5665567999999999999999999754455566665555 3454
No 32
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.48 E-value=9.2e-07 Score=64.03 Aligned_cols=81 Identities=27% Similarity=0.461 Sum_probs=57.8
Q ss_pred CCceEEEeeccccCcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECC
Q 028365 65 INAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQ 144 (210)
Q Consensus 65 ~gg~~~~~~~~~~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~ 144 (210)
.|.+++.+.... ...+..+..++++||+..|.|.|+. .|.+|||+|++.. ++. .+.+||.++.|+
T Consensus 8 ~Gv~~~~L~~~~----~~~g~~~~L~r~~pG~~~p~H~H~g-~ee~~VLeG~~~d------~~~----~~~~G~~~~~p~ 72 (91)
T PF12973_consen 8 PGVSVKPLHRDE----GETGERVSLLRLEPGASLPRHRHPG-GEEILVLEGELSD------GDG----RYGAGDWLRLPP 72 (91)
T ss_dssp TTEEEEEEEECS----SSTTEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEEE------TTC----EEETTEEEEE-T
T ss_pred CCEEEEEeccCC----CcccCEEEEEEECCCCCcCccCCCC-cEEEEEEEEEEEE------CCc----cCCCCeEEEeCC
Confidence 455555554321 1124578889999999999999975 8889999999763 233 569999999999
Q ss_pred CCeeEEEeCCCCCEEEEE
Q 028365 145 GLLHFQVNSGADGALGFV 162 (210)
Q Consensus 145 g~~H~~~N~g~~~a~~~~ 162 (210)
|..|.... ++.+.++.
T Consensus 73 g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 73 GSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TEEEEEEE--SSCEEEEE
T ss_pred CCccccCc--CCCEEEEE
Confidence 99998884 56677664
No 33
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.41 E-value=2.4e-06 Score=73.21 Aligned_cols=51 Identities=25% Similarity=0.355 Sum_probs=44.6
Q ss_pred CccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEe
Q 028365 95 GGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN 152 (210)
Q Consensus 95 gg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N 152 (210)
+...++|||. ..|++||++|++.+.+ +++.+ .+.+||++++|+|..|....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i----~~~~~--~l~~g~l~~i~p~~~H~~~~ 83 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEI----NGKRV--LLERGDFVFIPLGSHHQSFY 83 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEE----CCEEE--EECCCcEEEeCCCCccceee
Confidence 3356899995 5999999999999998 88877 99999999999999996643
No 34
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=98.37 E-value=1e-05 Score=62.67 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=56.5
Q ss_pred ccCCceEEEeeccccCcccCcceEEEEEE-EeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCC-EE
Q 028365 63 SIINAAVTPAFVAQFPAVNGLGLSLARLD-LAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGD-IM 140 (210)
Q Consensus 63 ~~~gg~~~~~~~~~~P~l~~~gis~~~v~-l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GD-v~ 140 (210)
....|.++.+....-....- -.++.+. .++|..+.+|+|....|+++|++|++.+.+-+..+.+ ...|...+ .+
T Consensus 12 ~D~RG~L~~~e~~~~ipf~i--~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~--~~~L~~~~~~L 87 (131)
T PF05523_consen 12 SDERGSLSVIERFDDIPFEI--KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEE--EFILDEPNKGL 87 (131)
T ss_dssp EETTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EE--EEEE--TTEEE
T ss_pred eCCCCcEEEEeccCCCCCCc--cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcE--EEEECCCCeEE
Confidence 34578888887764332321 1344443 4455569999999999999999999999986642223 34776665 79
Q ss_pred EECCCCeeEEEeCCCCCEEEEEEecCC
Q 028365 141 IFPQGLLHFQVNSGADGALGFVSFNSP 167 (210)
Q Consensus 141 ~~P~g~~H~~~N~g~~~a~~~~~f~s~ 167 (210)
.+|+|+.|.+.|.+++ +++++ +.+.
T Consensus 88 ~Ippg~w~~~~~~s~~-svlLv-~as~ 112 (131)
T PF05523_consen 88 YIPPGVWHGIKNFSED-SVLLV-LASE 112 (131)
T ss_dssp EE-TT-EEEEE---TT--EEEE-EESS
T ss_pred EECCchhhHhhccCCC-cEEEE-EcCC
Confidence 9999999999998777 66554 5544
No 35
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.33 E-value=2.1e-06 Score=71.94 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=62.0
Q ss_pred eEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEe
Q 028365 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSF 164 (210)
Q Consensus 85 is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f 164 (210)
..+..+++.||+.++.|.|. ..|+.+|++|++. + ++. .+.+||.+..|.|..|...+.++++++++++.
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----d--e~g----~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~ 195 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----D--ETG----VYGVGDFEEADGSVQHQPRTVSGGDCLCLAVL 195 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----c--CCC----ccCCCeEEECCCCCCcCcccCCCCCeEEEEEe
Confidence 46778899999999999995 5899999999952 3 233 78999999999999999999988999999988
Q ss_pred cCC
Q 028365 165 NSP 167 (210)
Q Consensus 165 ~s~ 167 (210)
+..
T Consensus 196 dap 198 (215)
T TIGR02451 196 DAP 198 (215)
T ss_pred cCC
Confidence 754
No 36
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.28 E-value=7.3e-06 Score=65.67 Aligned_cols=73 Identities=22% Similarity=0.293 Sum_probs=60.4
Q ss_pred ccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEecCCCCCcee
Q 028365 98 IPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQI 173 (210)
Q Consensus 98 ~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~s~~pg~~~ 173 (210)
..-|.|.+ .|+.|++.|.+.+.+..+ +++.+...+.+||.+.+|+|+-||+.-..+-..+.+-.|. ..+|.+-
T Consensus 88 ~~EH~H~d-~EvRy~vaG~GiF~v~~~-d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWVa 160 (181)
T COG1791 88 LQEHLHTD-DEVRYFVAGEGIFDVHSP-DGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWVA 160 (181)
T ss_pred HHHhccCC-ceEEEEEecceEEEEECC-CCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCcee
Confidence 46899965 999999999999999887 7788989999999999999999999765555566665565 5677764
No 37
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.28 E-value=1.9e-05 Score=60.31 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=74.5
Q ss_pred cCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEE
Q 028365 81 NGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALG 160 (210)
Q Consensus 81 ~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~ 160 (210)
.+.|+|+..-.+.+|.....|+-. --|-+||++|++++...+ +|+.+ .++||.++...+.-.|+.... ++..+
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~--~G~~~--~i~pGt~YaLd~hD~H~lra~--~dm~~ 103 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLD--TGEVH--PIKPGTMYALDKHDRHYLRAK--TDMRL 103 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEcc--CCcEE--EcCCCeEEecCCCccEEEEec--CCEEE
Confidence 567899999999999999999964 489999999999999876 68867 999999999999999999864 48999
Q ss_pred EEEecCCCCCce
Q 028365 161 FVSFNSPNPGLQ 172 (210)
Q Consensus 161 ~~~f~s~~pg~~ 172 (210)
+++||..-.|..
T Consensus 104 vCVFnPpltG~E 115 (126)
T PF06339_consen 104 VCVFNPPLTGRE 115 (126)
T ss_pred EEEcCCCCcCce
Confidence 999998776655
No 38
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.25 E-value=4.2e-06 Score=72.31 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=49.9
Q ss_pred ceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCC
Q 028365 84 GLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 154 (210)
Q Consensus 84 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g 154 (210)
.+.+.+ ..+....++|||. ..|++||++|++++.+ +++.+ .+++||+++||+|.+|.+...+
T Consensus 19 ~~~~~~--~~~~~~~~~H~H~-~~ei~~i~~G~~~~~i----~~~~~--~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 19 PVAVTN--RYPQETFVEHTHQ-FCEIVIVWRGNGLHVL----NDHPY--RITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred ceEEec--CCCCCCCcccccc-ceeEEEEecCceEEEE----CCeee--eecCCeEEEEcCCCcccccccC
Confidence 344443 2344457799995 5999999999999998 88866 9999999999999999887543
No 39
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.23 E-value=4.1e-06 Score=71.90 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=47.9
Q ss_pred CccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCC
Q 028365 95 GGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADG 157 (210)
Q Consensus 95 gg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~ 157 (210)
+...++|||.+..|++|+++|++.+.+ +++.+ .+++||++++|+|..|.+...++..
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~----~~~~~--~l~~g~~~ii~~~~~H~~~~~~~~~ 89 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQL----DEHEY--SEYAPCFFLTPPSVPHGFVTDLDAD 89 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEE----CCEEE--EecCCeEEEeCCCCccccccCCCcc
Confidence 456899999645899999999999988 78866 9999999999999999886544433
No 40
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.19 E-value=8.1e-06 Score=71.60 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=48.0
Q ss_pred eCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCC
Q 028365 93 AKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGA 155 (210)
Q Consensus 93 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~ 155 (210)
.|....++|||+ ..|++||++|++...+ +++.+ .+++||+++||+|.+|......+
T Consensus 56 ~~~~~~~~H~H~-~~el~~v~~G~g~~~v----~~~~~--~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 56 YPQDVFAEHTHD-FCELVIVWRGNGLHVL----NDRPY--RITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCCccccc-eEEEEEEEcCeEEEEE----CCEEE--eecCCeEEEECCCCeecccccCC
Confidence 444557999996 5999999999999998 88867 99999999999999998776443
No 41
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.16 E-value=6.2e-06 Score=73.34 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=62.9
Q ss_pred ceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEE
Q 028365 84 GLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVS 163 (210)
Q Consensus 84 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~ 163 (210)
.|.+..-.+.||...++|-|. +.-+.||++|++.+++| +++.+ .+++||+++.|.+..|...|.|+++++.+..
T Consensus 80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V---~g~~~--~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~ 153 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAV---DGERT--TMHPGDFIITPSWTWHDHGNPGDEPMIWLDG 153 (335)
T ss_pred hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEE---CCEEE--eeeCCCEEEeCCCeeEecccCCCCcEEEEec
Confidence 355666778999999999995 68999999999965555 67866 9999999999999999999999998776544
Q ss_pred e
Q 028365 164 F 164 (210)
Q Consensus 164 f 164 (210)
.
T Consensus 154 l 154 (335)
T TIGR02272 154 L 154 (335)
T ss_pred C
Confidence 4
No 42
>PRK13502 transcriptional activator RhaR; Provisional
Probab=98.12 E-value=1.4e-05 Score=68.63 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=47.8
Q ss_pred EeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCC
Q 028365 92 LAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 154 (210)
Q Consensus 92 l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g 154 (210)
..|....++|||. ..|++||.+|++.+.+ +++.+ .+++||++++|+|.+|.....+
T Consensus 25 ~~~~~~~~~H~h~-~~~l~~v~~G~~~~~i----~~~~~--~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 25 RYPQDVFAEHTHE-FCELVMVWRGNGLHVL----NERPY--RITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred CCCCCCCCccccc-eEEEEEEecCcEEEEE----CCEEE--eecCCcEEEECCCCcccccccC
Confidence 3555557899995 6999999999999998 78867 9999999999999999876533
No 43
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.04 E-value=1.6e-05 Score=61.62 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=52.1
Q ss_pred ccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEec
Q 028365 98 IPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFN 165 (210)
Q Consensus 98 ~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~ 165 (210)
.--|+|..+.|++.|++|++.+.+-.+ +++.. .+.+||++++|.|+-|. .+..+-+..++..+.
T Consensus 56 ~yHHYHs~aHEVl~vlrgqA~l~iGG~-~G~el--~v~~GDvlliPAGvGH~-rl~sS~DF~VvGaYp 119 (163)
T COG4297 56 NYHHYHSGAHEVLGVLRGQAGLQIGGA-DGQEL--EVGEGDVLLIPAGVGHC-RLHSSADFQVVGAYP 119 (163)
T ss_pred ccccccCCcceEEEEecceeEEEecCC-CCcee--eecCCCEEEEecCcccc-cccCCCCeEEEcccC
Confidence 467899999999999999999998665 67755 99999999999999994 444555666665554
No 44
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=98.00 E-value=1.4e-05 Score=68.30 Aligned_cols=73 Identities=25% Similarity=0.237 Sum_probs=46.1
Q ss_pred cceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEE
Q 028365 83 LGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGF 161 (210)
Q Consensus 83 ~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~ 161 (210)
-|.+..++++++|-..|||+|. +++-.||++|.+..+ +.+...+-|.+|..+..|+|..|+....+++.+.++
T Consensus 34 ~g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~-----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 34 DGPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG-----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp TS-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET-----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred CCcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC-----CCcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 4568889999999999999995 699999999986553 333334579999999999999998876666555544
No 45
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=98.00 E-value=4.5e-05 Score=53.28 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=44.5
Q ss_pred eEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEE
Q 028365 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQV 151 (210)
Q Consensus 85 is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~ 151 (210)
++.......||. ...++. ..|++||++|++++.. . +++.+ .+++||++++|+|..-.+.
T Consensus 7 ~~~g~w~~~pg~-~~~~~~--~~E~~~vleG~v~it~--~-~G~~~--~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 7 FSAGVWECTPGK-FPWPYP--EDEFFYVLEGEVTITD--E-DGETV--TFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp EEEEEEEEECEE-EEEEES--SEEEEEEEEEEEEEEE--T-TTEEE--EEETTEEEEE-TTEEEEEE
T ss_pred EEEEEEEECCce-eEeeCC--CCEEEEEEEeEEEEEE--C-CCCEE--EEcCCcEEEECCCCEEEEE
Confidence 566667778865 445555 3899999999998885 2 57755 9999999999999865443
No 46
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.96 E-value=1.6e-05 Score=67.85 Aligned_cols=53 Identities=26% Similarity=0.366 Sum_probs=46.0
Q ss_pred CCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeC
Q 028365 94 KGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNS 153 (210)
Q Consensus 94 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~ 153 (210)
+....++|||. ..|++||++|++++.+ +++.+ .+++||++++|++..|.....
T Consensus 24 ~~~~~~~H~H~-~~ei~~v~~G~~~~~i----~~~~~--~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHD-FHEIVIVEHGTGIHVF----NGQPY--TLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccC-ceeEEEEecCceeeEe----cCCcc--cccCCcEEEECCCccchhhhc
Confidence 44567999995 5999999999999998 77866 999999999999999977654
No 47
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.95 E-value=1.6e-05 Score=63.32 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=49.5
Q ss_pred cccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCC
Q 028365 97 VIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGA 155 (210)
Q Consensus 97 ~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~ 155 (210)
+.+.|.|++ .||-||++|++.+-+.+. +++-++.-+++||.+++|+|+-|.+.-+.+
T Consensus 85 FfEEhlh~d-eeiR~il~GtgYfDVrd~-dd~WIRi~vekGDlivlPaGiyHRFTtt~~ 141 (179)
T KOG2107|consen 85 FFEEHLHED-EEIRYILEGTGYFDVRDK-DDQWIRIFVEKGDLIVLPAGIYHRFTTTPS 141 (179)
T ss_pred HHHHhcCch-hheEEEeecceEEeeccC-CCCEEEEEEecCCEEEecCcceeeeecCch
Confidence 468999987 999999999999999877 677778899999999999999998765433
No 48
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.93 E-value=2.1e-05 Score=68.34 Aligned_cols=116 Identities=19% Similarity=0.262 Sum_probs=83.6
Q ss_pred CCCCCCceEEecCCC----CCCccccCCceEEEeeccccCcccCcc-----eEEEEEEEeCCccccceecCCCCEEEEEE
Q 028365 43 AMVTADDFVFSGLGV----AGNTTSIINAAVTPAFVAQFPAVNGLG-----LSLARLDLAKGGVIPIHTHPAASEILLVV 113 (210)
Q Consensus 43 ~~~~~~df~f~~l~~----~~~~~~~~gg~~~~~~~~~~P~l~~~g-----is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl 113 (210)
....+.-|.|..++. .+.... ..+.++.+-.-+-|+|++.. +.+..--|.||...|.|.|. ..-+-+|+
T Consensus 42 ~~~vp~lW~~~~ir~ll~~sgeli~-~~~a~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvv 119 (351)
T COG3435 42 PDCVPALWKYEEIRPLLLRSGELIS-AREAVRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVV 119 (351)
T ss_pred CccccccccHHHHHHHHHHhhhccC-cccceeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEE
Confidence 344455566654422 222212 22335555556778887753 23344467899999999995 58999999
Q ss_pred eCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEec
Q 028365 114 HGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFN 165 (210)
Q Consensus 114 ~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~ 165 (210)
+|++-+++|+ |+ +..+++||.++-|++..|...|.|.+|++.+-.++
T Consensus 120 eG~Ga~T~Vd---Ge--r~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLD 166 (351)
T COG3435 120 EGKGAYTVVD---GE--RTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLD 166 (351)
T ss_pred eccceeEeec---Cc--eeeccCCCEEEccCceeccCCCCCCCceEEEcccc
Confidence 9999988885 55 34899999999999999999999999999886554
No 49
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.80 E-value=0.00012 Score=58.22 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=42.7
Q ss_pred eEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEE
Q 028365 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQV 151 (210)
Q Consensus 85 is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~ 151 (210)
|++..++++.. +.-|.-.-+|+.||++|++.+.. +|+.+ ..++||+++||+|.--.+.
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~----~G~~~--~A~~GDvi~iPkGs~I~fs 134 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI----DGQTV--TAKPGDVIFIPKGSTITFS 134 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE----TTEEE--EEETT-EEEE-TT-EEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE----CCEEE--EEcCCcEEEECCCCEEEEe
Confidence 56666666653 45577677999999999999886 79977 9999999999999865443
No 50
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.74 E-value=0.00058 Score=53.83 Aligned_cols=79 Identities=11% Similarity=0.232 Sum_probs=49.6
Q ss_pred EEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEecC
Q 028365 87 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNS 166 (210)
Q Consensus 87 ~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~s 166 (210)
+..+.=.|+...-.|.-+ ..||+|-++|...+.+++ +++.....+++||+++.|++++|.-+-.. +.+-+++-..
T Consensus 35 ~VmvVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e--~g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr~ 109 (151)
T PF06052_consen 35 IVMVVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVE--DGKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIERK 109 (151)
T ss_dssp EEEEEESSB--SSEEE-S-S-EEEEEEES-EEEEEEE--TTEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE-
T ss_pred EEEEEcCCCCCCccccCC-cceEEEEEeCcEEEEEEe--CCceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEec
Confidence 334455777778899996 499999999999999988 46666779999999999999999987754 3444444443
Q ss_pred CCCC
Q 028365 167 PNPG 170 (210)
Q Consensus 167 ~~pg 170 (210)
..+|
T Consensus 110 R~~~ 113 (151)
T PF06052_consen 110 RPEG 113 (151)
T ss_dssp --TT
T ss_pred cCCC
Confidence 3333
No 51
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.73 E-value=0.00027 Score=58.99 Aligned_cols=75 Identities=19% Similarity=0.146 Sum_probs=64.1
Q ss_pred eEEEEEEEeCCc-cccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEE
Q 028365 85 LSLARLDLAKGG-VIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVS 163 (210)
Q Consensus 85 is~~~v~l~pgg-~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~ 163 (210)
++-+.+++.|+| .-.+-.-+++.-++||++|++.+.+ +|+.+ .|++|+..++|+|..|...|...+++.+.+.
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~----~G~th--~l~eggyaylPpgs~~~~~N~~~~~~rfhw~ 134 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA----EGKTH--ALREGGYAYLPPGSGWTLRNAQKEDSRFHWI 134 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE----cCeEE--EeccCCeEEeCCCCcceEeeccCCceEEEEE
Confidence 456678998877 5667777788889999999999998 88966 9999999999999999999999999988765
Q ss_pred ec
Q 028365 164 FN 165 (210)
Q Consensus 164 f~ 165 (210)
-.
T Consensus 135 rk 136 (264)
T COG3257 135 RK 136 (264)
T ss_pred ee
Confidence 43
No 52
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.63 E-value=0.00018 Score=64.03 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=63.5
Q ss_pred CceEEEeeccccC-cccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECC
Q 028365 66 NAAVTPAFVAQFP-AVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQ 144 (210)
Q Consensus 66 gg~~~~~~~~~~P-~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~ 144 (210)
|-.+..+++.+=+ .+.+++.. ...+++|....+|-|. ...++||++|+++..+ +++.+ ..++||+|++|.
T Consensus 232 g~~l~y~NP~TG~~~~pti~~~--~q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~i----g~~~~--~W~~gD~f~vPs 302 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPTIGAF--IQLLPKGFRTATYRST-DATVFCVVEGRGQVRI----GDAVF--RFSPKDVFVVPS 302 (335)
T ss_pred eEEEEEeCCCCCCCcchhHHHH--HhccCCCCCCCCcccc-ccEEEEEEeCeEEEEE----CCEEE--EecCCCEEEECC
Confidence 3345566654444 33454333 3567888889999995 5899999999999999 78866 999999999999
Q ss_pred CCeeEEEeCCCCCEEEEE
Q 028365 145 GLLHFQVNSGADGALGFV 162 (210)
Q Consensus 145 g~~H~~~N~g~~~a~~~~ 162 (210)
-..|...|. +++.++.
T Consensus 303 W~~~~h~a~--~da~Lf~ 318 (335)
T TIGR02272 303 WHPVRFEAS--DDAVLFS 318 (335)
T ss_pred CCcEecccC--CCeEEEE
Confidence 988766663 4565553
No 53
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.47 E-value=0.00039 Score=52.80 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=46.2
Q ss_pred eEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEE
Q 028365 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQV 151 (210)
Q Consensus 85 is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~ 151 (210)
+......-.||. +|++-...|++++|+|++++.- .+|+.+ .+++||+++||+|..=.++
T Consensus 45 ~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~---d~Ge~v--~~~aGD~~~~~~G~~g~W~ 103 (116)
T COG3450 45 VETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTP---DGGEPV--EVRAGDSFVFPAGFKGTWE 103 (116)
T ss_pred eeEeEEEecCcc---ceEEcccceEEEEEeeEEEEEC---CCCeEE--EEcCCCEEEECCCCeEEEE
Confidence 566666667765 5666667999999999998774 267866 9999999999999876554
No 54
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.44 E-value=0.0033 Score=51.03 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=56.1
Q ss_pred CCccccceecCCC-CEEEEEEeCEEEEEEEecCC-----CeEEEEEEcCC--CEEEECCCCeeEEEeCCCCCEEEEE
Q 028365 94 KGGVIPIHTHPAA-SEILLVVHGCITAGFISSSA-----NTVYVKTLKKG--DIMIFPQGLLHFQVNSGADGALGFV 162 (210)
Q Consensus 94 pgg~~~pH~Hp~a-~Ei~yVl~G~~~v~vv~~~~-----~~~~~~~l~~G--Dv~~~P~g~~H~~~N~g~~~a~~~~ 162 (210)
+|-++.+|+|..- .+++.|++|++....+|-.. ++.....+.+- ..++||+|..|..++.+++..+++.
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~ 130 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYK 130 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEE
Confidence 8889999999887 89999999999988887432 34555567765 7899999999999999988754443
No 55
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.41 E-value=0.0018 Score=51.24 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=49.1
Q ss_pred eEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEE
Q 028365 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGF 161 (210)
Q Consensus 85 is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~ 161 (210)
+++...+.++ ..++|-.. -+|+-||++|++.+.. +|+.. .-+|||+++||+|.---+.-.|. +.++
T Consensus 100 l~aG~m~~~~-~tf~wtl~--yDe~d~VlEGrL~V~~----~g~tv--~a~aGDvifiPKgssIefst~ge--a~fl 165 (176)
T COG4766 100 LGAGLMEMKN-TTFPWTLN--YDEIDYVLEGRLHVRI----DGRTV--IAGAGDVIFIPKGSSIEFSTTGE--AKFL 165 (176)
T ss_pred cccceeeecc-ccCcceec--ccceeEEEeeeEEEEE----cCCeE--ecCCCcEEEecCCCeEEEeccce--EEEE
Confidence 4555566677 56666555 4799999999999998 78855 99999999999998765544333 4443
No 56
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=97.16 E-value=0.0046 Score=50.31 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=53.9
Q ss_pred eCCccccceecCCC---CEEEEEEeCEEEEEEEecC-----CCeEEEEEEcCCC--EEEECCCCeeEEEeCCCCCEEEE
Q 028365 93 AKGGVIPIHTHPAA---SEILLVVHGCITAGFISSS-----ANTVYVKTLKKGD--IMIFPQGLLHFQVNSGADGALGF 161 (210)
Q Consensus 93 ~pgg~~~pH~Hp~a---~Ei~yVl~G~~~v~vv~~~-----~~~~~~~~l~~GD--v~~~P~g~~H~~~N~g~~~a~~~ 161 (210)
.+|.++.+|+|..- ..++.|++|++..-++|-. -++.....|.+++ .++||+|..|..+..+++..+++
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y 129 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLY 129 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEE
Confidence 45888999999764 5899999999999988832 2677777898887 69999999999999977644444
No 57
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=97.07 E-value=0.024 Score=46.15 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=54.6
Q ss_pred eCCccccceecC--CCCEEEEEEeCEEEEEEEecC-----CCeEEEEEEcC--CCEEEECCCCeeEEEeCCCCCEEEE
Q 028365 93 AKGGVIPIHTHP--AASEILLVVHGCITAGFISSS-----ANTVYVKTLKK--GDIMIFPQGLLHFQVNSGADGALGF 161 (210)
Q Consensus 93 ~pgg~~~pH~Hp--~a~Ei~yVl~G~~~v~vv~~~-----~~~~~~~~l~~--GDv~~~P~g~~H~~~N~g~~~a~~~ 161 (210)
.+|.++.+|.|. .-..+++|++|++..-++|-. -++.....|.+ +..++||+|..|..+..+++..+.+
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y 129 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLY 129 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEE
Confidence 568889999983 358999999999999998852 25666668887 5699999999999999886633333
No 58
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.02 E-value=0.0027 Score=55.44 Aligned_cols=91 Identities=23% Similarity=0.197 Sum_probs=67.1
Q ss_pred cCCceEEEeeccccC-cccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEE
Q 028365 64 IINAAVTPAFVAQFP-AVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIF 142 (210)
Q Consensus 64 ~~gg~~~~~~~~~~P-~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~ 142 (210)
-.|-.++.+++.+=- ...+ |.+..--++||-.-.+|-|.+ .-+.-|.+|++.+.+ +++.| ..++||+|++
T Consensus 241 ~dG~~~ryvNP~TGg~~mpt--I~a~mqlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~I----g~~rf--~~~~~D~fvV 311 (351)
T COG3435 241 FDGYKMRYVNPVTGGYAMPT--IGAFMQLLPPGFHGKAHRHTD-STIYHVVEGSGYTII----GGERF--DWSAGDIFVV 311 (351)
T ss_pred CCcceEEEecCCCCCCcCch--HHHHHHhcCCcccCCceeccC-CEEEEEEecceeEEE----CCEEe--eccCCCEEEc
Confidence 446666666653321 1122 333334568888889999976 788889999999999 88977 9999999999
Q ss_pred CCCCeeEEEeCCCCCEEEEEEec
Q 028365 143 PQGLLHFQVNSGADGALGFVSFN 165 (210)
Q Consensus 143 P~g~~H~~~N~g~~~a~~~~~f~ 165 (210)
|.=..|...| |.+++.+++ |+
T Consensus 312 PsW~~~~~~~-gs~da~LFs-fs 332 (351)
T COG3435 312 PSWAWHEHVN-GSEDAVLFS-FS 332 (351)
T ss_pred cCcceeeccc-CCcceEEEe-cC
Confidence 9999998887 477787774 44
No 59
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=96.75 E-value=0.043 Score=44.43 Aligned_cols=82 Identities=20% Similarity=0.202 Sum_probs=55.8
Q ss_pred eEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCC---e----EEEEEEcCCCEEEECCCCeeEEEeCC-CC
Q 028365 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSAN---T----VYVKTLKKGDIMIFPQGLLHFQVNSG-AD 156 (210)
Q Consensus 85 is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~---~----~~~~~l~~GDv~~~P~g~~H~~~N~g-~~ 156 (210)
+.+..+.-.||...++|=|..+.=++.|++|+++-......++ . .....+..|..++++.+.+|.+.|.+ ++
T Consensus 75 ~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~~ 154 (175)
T PF05995_consen 75 FELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGDE 154 (175)
T ss_dssp -EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SSS
T ss_pred eEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCCC
Confidence 5677788999999999999877778899999988776543223 1 12335677777889999999999987 77
Q ss_pred CEEEEEEecC
Q 028365 157 GALGFVSFNS 166 (210)
Q Consensus 157 ~a~~~~~f~s 166 (210)
+++-+=++..
T Consensus 155 ~avSLHvYsp 164 (175)
T PF05995_consen 155 PAVSLHVYSP 164 (175)
T ss_dssp -EEEEEEEES
T ss_pred CEEEEEEcCC
Confidence 8877766664
No 60
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.62 E-value=0.018 Score=47.84 Aligned_cols=71 Identities=23% Similarity=0.383 Sum_probs=50.1
Q ss_pred EEEEEEEeCCc-cccceecCCCCEEEEEEeCEEEEEEEecC--------C--------------------------CeEE
Q 028365 86 SLARLDLAKGG-VIPIHTHPAASEILLVVHGCITAGFISSS--------A--------------------------NTVY 130 (210)
Q Consensus 86 s~~~v~l~pgg-~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~--------~--------------------------~~~~ 130 (210)
....+.+.+++ ..++|+.+ ..-+..+++|+=++.++.+. . -+.+
T Consensus 131 ~~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~ 209 (251)
T PF13621_consen 131 QSSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPY 209 (251)
T ss_dssp CEEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EE
T ss_pred cccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCcee
Confidence 34456777744 68999987 58899999999999888762 0 1345
Q ss_pred EEEEcCCCEEEECCCCeeEEEeCCCCC
Q 028365 131 VKTLKKGDIMIFPQGLLHFQVNSGADG 157 (210)
Q Consensus 131 ~~~l~~GDv~~~P~g~~H~~~N~g~~~ 157 (210)
..+|+|||+++||+|..|+++|..+++
T Consensus 210 ~~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 210 EVVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEEECCCeEEEECCCCeEEEEEcCCCC
Confidence 779999999999999999999984444
No 61
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.44 E-value=0.039 Score=50.63 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=40.7
Q ss_pred ccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEec
Q 028365 98 IPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFN 165 (210)
Q Consensus 98 ~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~ 165 (210)
...-.+-+++|++++.+|++++.- +-... .+++||.++||+|+.+.+.-.|.....++.++.
T Consensus 138 ~~~f~NaDGD~Li~~q~G~l~l~T----e~G~L--~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E~~~ 199 (424)
T PF04209_consen 138 DRAFRNADGDELIFPQQGSLRLET----EFGRL--DVRPGDYVVIPRGTRFRVELPGPARGYIIENFG 199 (424)
T ss_dssp SEEEEESSEEEEEEEEES-EEEEE----TTEEE--EE-TTEEEEE-TT--EEEE-SSSEEEEEEEEES
T ss_pred CcceEcCCCCEEEEEEECCEEEEe----cCeeE--EEcCCeEEEECCeeEEEEEeCCCceEEEEEcCC
Confidence 344457789999999999998875 43433 899999999999999988766444444444454
No 62
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=96.30 E-value=0.03 Score=44.78 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=46.0
Q ss_pred EEEEEEEeCCccccceecCCCCEEE----EEE-eCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEE
Q 028365 86 SLARLDLAKGGVIPIHTHPAASEIL----LVV-HGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALG 160 (210)
Q Consensus 86 s~~~v~l~pgg~~~pH~Hp~a~Ei~----yVl-~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~ 160 (210)
.+....+.||+.+.||.-+....+- .++ .+.+.+.+ +++.+ ..++|++++|.....|...|.|+++-+.
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v----~~~~~--~w~~G~~~~fD~s~~H~~~N~~~~~Rv~ 154 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV----GGETR--HWREGECWVFDDSFEHEVWNNGDEDRVV 154 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE----TTEEE--B--CTEEEEE-TTS-EEEEESSSS-EEE
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE----CCeEE--EeccCcEEEEeCCEEEEEEeCCCCCEEE
Confidence 3555678999999999987543332 233 24566666 77755 8999999999999999999999876554
Q ss_pred E
Q 028365 161 F 161 (210)
Q Consensus 161 ~ 161 (210)
+
T Consensus 155 L 155 (163)
T PF05118_consen 155 L 155 (163)
T ss_dssp E
T ss_pred E
Confidence 4
No 63
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.95 E-value=0.094 Score=44.07 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=45.3
Q ss_pred EEEeCCccccceecCCCCEEEEEEe-CEEEEEEEecC---------------CCeEE------EEEEcCCCEEEECCCCe
Q 028365 90 LDLAKGGVIPIHTHPAASEILLVVH-GCITAGFISSS---------------ANTVY------VKTLKKGDIMIFPQGLL 147 (210)
Q Consensus 90 v~l~pgg~~~pH~Hp~a~Ei~yVl~-G~~~v~vv~~~---------------~~~~~------~~~l~~GDv~~~P~g~~ 147 (210)
+.+.+|...|.|.|..-.|=++..- |.+.+.+.... +|..+ ...|+||+.+-+++|..
T Consensus 92 m~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~y 171 (225)
T PF07385_consen 92 MIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIY 171 (225)
T ss_dssp EEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEE
T ss_pred eeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCCe
Confidence 5668899999999999888887775 57766665431 22211 34899999999999999
Q ss_pred eEEEeCCCCCEEEEEEec
Q 028365 148 HFQVNSGADGALGFVSFN 165 (210)
Q Consensus 148 H~~~N~g~~~a~~~~~f~ 165 (210)
|+++-.+.. +++.-++
T Consensus 172 H~Fw~e~g~--vLigEVS 187 (225)
T PF07385_consen 172 HWFWGEGGD--VLIGEVS 187 (225)
T ss_dssp EEEEE-TTS--EEEEEEE
T ss_pred eeEEecCCC--EEEEeee
Confidence 999875444 5554444
No 64
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.88 E-value=0.036 Score=47.64 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=37.2
Q ss_pred CCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCC
Q 028365 106 ASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGA 155 (210)
Q Consensus 106 a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~ 155 (210)
.-++.++++|++.+.+ +++.+ .+++||++++|+|.+|......+
T Consensus 49 ~~~i~~~~~G~~~~~~----~~~~~--~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 49 GYILNLTIRGQGVIFN----GGRAF--VCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred ceEEEEEEeccEEEec----CCeeE--ecCCCCEEEECCCCceeeccCCC
Confidence 4688999999999886 77866 99999999999999997655443
No 65
>PF12852 Cupin_6: Cupin
Probab=95.76 E-value=0.063 Score=43.29 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=34.4
Q ss_pred CEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeC
Q 028365 107 SEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNS 153 (210)
Q Consensus 107 ~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~ 153 (210)
.-+.+|++|+.++.+-+ +++.. .|++||++++|+|..|.+...
T Consensus 36 ~~fh~V~~G~~~l~~~~--~~~~~--~L~~GDivllp~g~~H~l~~~ 78 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPG--GGEPI--RLEAGDIVLLPRGTAHVLSSD 78 (186)
T ss_pred eEEEEEECCeEEEEEcC--CCCeE--EecCCCEEEEcCCCCeEeCCC
Confidence 56778999999999711 23544 999999999999999988543
No 66
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.51 E-value=0.13 Score=47.30 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=44.3
Q ss_pred ccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEE--EEEec
Q 028365 98 IPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALG--FVSFN 165 (210)
Q Consensus 98 ~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~--~~~f~ 165 (210)
-..-.+-+++|++++.+|++.+.- +-- ...+++||+++||+|+.+.+.- .++++.. +..+.
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~T----EfG--~L~v~pgei~VIPRG~~frv~l-~~gp~rgyi~E~~g 208 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLAT----ELG--VLDVEPGEIAVIPRGVKFRVEL-PDGPARGYVCENYG 208 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEE----ecc--ceEecCCCEEEEcCccEEEEec-CCCCeeEEEEEecC
Confidence 455567789999999999998875 222 3389999999999999988763 3344444 44443
No 67
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=95.43 E-value=0.15 Score=46.88 Aligned_cols=62 Identities=6% Similarity=0.037 Sum_probs=46.3
Q ss_pred ccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEec
Q 028365 98 IPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFN 165 (210)
Q Consensus 98 ~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~ 165 (210)
...-..-+.+|++++.+|++.+.-. =| ...+++||+++||+|+.+.+.-.+.....++..+.
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TE---fG---~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTE---FG---RLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEe---cc---ceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 4555677899999999999988751 13 23899999999999999988765544455555544
No 68
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.34 E-value=0.22 Score=44.01 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=43.7
Q ss_pred EEEEEEEeCCc--cccceecCCCCEEEEEEeCEEEEEEEecC------------C-----CeEEEEEEcCCCEEEECCCC
Q 028365 86 SLARLDLAKGG--VIPIHTHPAASEILLVVHGCITAGFISSS------------A-----NTVYVKTLKKGDIMIFPQGL 146 (210)
Q Consensus 86 s~~~v~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~------------~-----~~~~~~~l~~GDv~~~P~g~ 146 (210)
..+.+.+.|++ -+.|||=.. +-+++=++|+=+..+-.+. . ......+|+|||++|+|+|.
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~~-dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDDH-DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-SS-EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECCc-ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 34456677877 689999754 6667778888777765520 0 11235699999999999999
Q ss_pred eeEEEeCC
Q 028365 147 LHFQVNSG 154 (210)
Q Consensus 147 ~H~~~N~g 154 (210)
+|.....+
T Consensus 193 ~H~~~~~~ 200 (319)
T PF08007_consen 193 WHQAVTTD 200 (319)
T ss_dssp EEEEEESS
T ss_pred cCCCCCCC
Confidence 99999887
No 69
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.22 E-value=0.24 Score=45.56 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=43.9
Q ss_pred ccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEe-CCCCCEEEEEEe
Q 028365 98 IPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSF 164 (210)
Q Consensus 98 ~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N-~g~~~a~~~~~f 164 (210)
...-.+-+.+|++++.+|++.+.-. =|+ ..+++||+++||+|+.+.+.- .|.....++..+
T Consensus 139 ~~~f~NaDGD~Livpq~G~l~i~TE---fG~---L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~ 200 (435)
T PLN02658 139 DCAFCNADGDFLIVPQQGRLWIKTE---LGK---LQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIF 200 (435)
T ss_pred cceeecCCCCEEEEEEeCCEEEEEe---ccc---eEecCCCEEEecCccEEEEecCCCCeeEEEEeec
Confidence 3445677899999999999988751 233 389999999999999987763 233334444444
No 70
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=95.08 E-value=0.19 Score=43.33 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=45.9
Q ss_pred eEEEEEEEeCCcc-----ccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCC
Q 028365 85 LSLARLDLAKGGV-----IPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGA 155 (210)
Q Consensus 85 is~~~v~l~pgg~-----~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~ 155 (210)
+.+.++...+..+ ...|.+.+..-++++++|++.+.. +++.+ .+++||++++|.+.+|.+...++
T Consensus 45 ~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~----~g~~~--~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 45 LKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ----DDRQV--QLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred EEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE----CCeEE--EEcCCCEEEEECCCCcEeecCCC
Confidence 4555555544432 123444454567788999999987 78866 99999999999999997765443
No 71
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.07 E-value=0.016 Score=49.78 Aligned_cols=75 Identities=21% Similarity=0.197 Sum_probs=43.7
Q ss_pred eEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEe
Q 028365 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSF 164 (210)
Q Consensus 85 is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f 164 (210)
+....+.++.|.-..+|+|+ ..|-.|||+|++.++.-. ......|.+|-.+.-|.+..|... .++++++++.-.
T Consensus 171 ~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~----~~~~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRt 244 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYG----ASNFGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRT 244 (251)
T ss_dssp E-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEE----EETTEEEEE-TT-EE--E-------EESS-EEEEEEE
T ss_pred eeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecc----cCCCccccCCcccccCCccccccc-ccCCCEEEEEEE
Confidence 44556677777779999997 489999999999986522 222459999999999999999988 678888888655
Q ss_pred c
Q 028365 165 N 165 (210)
Q Consensus 165 ~ 165 (210)
+
T Consensus 245 d 245 (251)
T PF14499_consen 245 D 245 (251)
T ss_dssp S
T ss_pred C
Confidence 4
No 72
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=94.98 E-value=0.09 Score=38.38 Aligned_cols=75 Identities=25% Similarity=0.343 Sum_probs=33.6
Q ss_pred EEEeCCccccceecCCCC--EEEEEE--eCEEEEEEEecC-----------------CCeEEEEEEcCCCEEEECCCCee
Q 028365 90 LDLAKGGVIPIHTHPAAS--EILLVV--HGCITAGFISSS-----------------ANTVYVKTLKKGDIMIFPQGLLH 148 (210)
Q Consensus 90 v~l~pgg~~~pH~Hp~a~--Ei~yVl--~G~~~v~vv~~~-----------------~~~~~~~~l~~GDv~~~P~g~~H 148 (210)
...++|+..++|.|+++. =+.||- ++...+.+.+++ ....+....++||+++||.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 345688899999998742 222332 222223333331 11234558899999999999999
Q ss_pred EEEeCCCCCEEEEEEe
Q 028365 149 FQVNSGADGALGFVSF 164 (210)
Q Consensus 149 ~~~N~g~~~a~~~~~f 164 (210)
.+.....+.-++-.+|
T Consensus 85 ~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 85 GVPPNNSDEERISISF 100 (101)
T ss_dssp EE----SSS-EEEEEE
T ss_pred eccCcCCCCCEEEEEc
Confidence 9864333333333344
No 73
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=94.90 E-value=0.22 Score=37.27 Aligned_cols=62 Identities=23% Similarity=0.407 Sum_probs=43.5
Q ss_pred CccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECC--CCeeEEEeCCC-CCEEEE
Q 028365 95 GGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQ--GLLHFQVNSGA-DGALGF 161 (210)
Q Consensus 95 gg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~--g~~H~~~N~g~-~~a~~~ 161 (210)
+.-+++|-|.+-.-+.||++|+++-. |. .+. ...|++||+-++-+ |+.|.-.|.++ +++..+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds-~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DS-LGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ET-TSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CC-CCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 45679999977555568999988655 44 455 34899999966654 78898888877 566554
No 74
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.65 E-value=0.17 Score=43.86 Aligned_cols=62 Identities=8% Similarity=-0.020 Sum_probs=47.2
Q ss_pred eCCccccceec-CCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCC-CEEEECCCCeeEEEeCC
Q 028365 93 AKGGVIPIHTH-PAASEILLVVHGCITAGFISSSANTVYVKTLKKG-DIMIFPQGLLHFQVNSG 154 (210)
Q Consensus 93 ~pgg~~~pH~H-p~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~G-Dv~~~P~g~~H~~~N~g 154 (210)
-|++++.+|.| +...|.+.|++|++.+...++.+.......+.+. +.-++|++..|.+....
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 36778999999 5678999999999999998873333334456664 56679999999988753
No 75
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=94.22 E-value=0.7 Score=33.80 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=37.6
Q ss_pred EEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEe
Q 028365 91 DLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN 152 (210)
Q Consensus 91 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N 152 (210)
.+.||. ....++ +.|++-|++|++++.+ .+..-.+.+++|+.+.+|.+.---++-
T Consensus 29 Vm~pGe-Y~F~T~--~~E~M~vvsG~l~V~l----pg~~ew~~~~aGesF~VpanssF~v~v 83 (94)
T PF06865_consen 29 VMLPGE-YTFGTS--APERMEVVSGELEVKL----PGEDEWQTYSAGESFEVPANSSFDVKV 83 (94)
T ss_dssp EE-SEC-EEEEES--S-EEEEEEESEEEEEE----TT-SS-EEEETT-EEEE-TTEEEEEEE
T ss_pred EEeeeE-EEEcCC--CCEEEEEEEeEEEEEc----CCCcccEEeCCCCeEEECCCCeEEEEE
Confidence 456665 344444 6899999999999998 443335699999999999998876665
No 76
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=93.90 E-value=0.59 Score=34.35 Aligned_cols=66 Identities=17% Similarity=0.337 Sum_probs=42.6
Q ss_pred EEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEE
Q 028365 88 ARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFV 162 (210)
Q Consensus 88 ~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~ 162 (210)
..++++||+......-+...-++||++|++.+. ++. ..+.+|+++++..|..=.+.+.+ +.+.++.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~------~~~--~~~~~~~~~~l~~g~~i~~~a~~-~~a~~ll 67 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG------GEE--DPLEAGQLVVLEDGDEIELTAGE-EGARFLL 67 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET------TTT--EEEETTEEEEE-SECEEEEEESS-SSEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC------CCc--ceECCCcEEEECCCceEEEEECC-CCcEEEE
Confidence 467889999755444444568999999997553 331 47999999999976665566543 6666553
No 77
>PRK10579 hypothetical protein; Provisional
Probab=93.83 E-value=1.4 Score=32.21 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=41.4
Q ss_pred EeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEe
Q 028365 92 LAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN 152 (210)
Q Consensus 92 l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N 152 (210)
+.||. -+.-..+.|++-|++|++++.+ .+..-.+.+++|+.|.+|.+.---++.
T Consensus 30 m~pGe---y~F~T~~~E~MeivsG~l~V~L----pg~~ew~~~~aG~sF~VpanssF~l~v 83 (94)
T PRK10579 30 MAEGE---YTFSTAEPEEMTVISGALNVLL----PGATDWQVYEAGEVFNVPGHSEFHLQV 83 (94)
T ss_pred EeeeE---EEEcCCCcEEEEEEeeEEEEEC----CCCcccEEeCCCCEEEECCCCeEEEEE
Confidence 45655 3344457899999999999998 444335699999999999998776654
No 78
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=93.71 E-value=0.43 Score=39.31 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=46.0
Q ss_pred EEEEeCCccccceecCCCCEEEEEEe-CEEEEEEE--ecC-------------CCeEE------EEEEcCCCEEEECCCC
Q 028365 89 RLDLAKGGVIPIHTHPAASEILLVVH-GCITAGFI--SSS-------------ANTVY------VKTLKKGDIMIFPQGL 146 (210)
Q Consensus 89 ~v~l~pgg~~~pH~Hp~a~Ei~yVl~-G~~~v~vv--~~~-------------~~~~~------~~~l~~GDv~~~P~g~ 146 (210)
.+.+.+|...|+|.|++-.|=+.=-. |++.+.+. +.. +++.. ...|+||+.+-+|+|.
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~ 169 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL 169 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence 46678999999999996555433222 23333222 100 11111 3389999999999999
Q ss_pred eeEEEeCCCCCEEEEEEecC
Q 028365 147 LHFQVNSGADGALGFVSFNS 166 (210)
Q Consensus 147 ~H~~~N~g~~~a~~~~~f~s 166 (210)
-|+++..+.. +++.-.++
T Consensus 170 ~HsFwae~g~--vlvgEvSs 187 (225)
T COG3822 170 YHSFWAEEGG--VLVGEVSS 187 (225)
T ss_pred eeeeeecCCc--EEEEEEee
Confidence 9999874332 44443333
No 79
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.58 E-value=0.12 Score=37.89 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCEEEECCCCeeEEEeCCCC
Q 028365 128 TVYVKTLKKGDIMIFPQGLLHFQVNSGAD 156 (210)
Q Consensus 128 ~~~~~~l~~GDv~~~P~g~~H~~~N~g~~ 156 (210)
+.++.+-++||.+++|+|..|++.|.|..
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCce
Confidence 45577999999999999999999998864
No 80
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=93.57 E-value=0.42 Score=39.73 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=62.0
Q ss_pred ccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCC---C------eEEEE-------EEcCCC-EEEE
Q 028365 80 VNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA---N------TVYVK-------TLKKGD-IMIF 142 (210)
Q Consensus 80 l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~---~------~~~~~-------~l~~GD-v~~~ 142 (210)
.....+++...-++||+.+|+|=||+-+-+.-|+.|++.+.-.+--+ . +.... .-.+++ .+.-
T Consensus 39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~ 118 (200)
T PF07847_consen 39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY 118 (200)
T ss_pred EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence 34445788888999999999999999999999999999987654210 0 11111 122334 3566
Q ss_pred CCC--CeeEEEeCCCCCEEEEEEecCC
Q 028365 143 PQG--LLHFQVNSGADGALGFVSFNSP 167 (210)
Q Consensus 143 P~g--~~H~~~N~g~~~a~~~~~f~s~ 167 (210)
|.. -+|.+.+.+ +++.++-++...
T Consensus 119 P~~ggNiH~f~a~~-~p~AflDIL~PP 144 (200)
T PF07847_consen 119 PTSGGNIHEFTALT-GPCAFLDILAPP 144 (200)
T ss_pred cCCCCeeEEEEeCC-CCeEEEEEccCC
Confidence 664 899999987 899998888643
No 81
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=93.57 E-value=0.8 Score=41.81 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=41.9
Q ss_pred eEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEE
Q 028365 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQV 151 (210)
Q Consensus 85 is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~ 151 (210)
..+.++++..+. .++..+..++++|++|++++.. ++..+ .|++|+++++|++......
T Consensus 321 F~~~~~~l~~~~---~~~~~~~~~Illv~~G~~~i~~----~~~~~--~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 321 FAFSLHDLSDQP---TTLSQQSAAILFCVEGEAVLWK----GEQQL--TLKPGESAFIAANESPVTV 378 (389)
T ss_pred cEEEEEEECCce---EEecCCCcEEEEEEcceEEEEe----CCeEE--EECCCCEEEEeCCCccEEE
Confidence 566666665542 2233356899999999998864 56645 8999999999998776554
No 82
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=93.47 E-value=0.16 Score=42.45 Aligned_cols=61 Identities=11% Similarity=0.221 Sum_probs=48.8
Q ss_pred eCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCC
Q 028365 93 AKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD 156 (210)
Q Consensus 93 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~ 156 (210)
.|+..---|..+. .|++|=.+|.....+++. ++.....+++||++..|..++|.-+--.++
T Consensus 41 GPN~RkdyHieeg-eE~FyQ~KGdMvLKVie~--g~~rDivI~qGe~flLParVpHSPqRFant 101 (279)
T KOG3995|consen 41 GPNTRKDYHIEEG-EEVFYQLKGDMVLKVLEQ--GKHRDVVIRQGEIFLLPARVPHSPQRFANT 101 (279)
T ss_pred CCCcccccccCCc-chhheeecCceEEeeecc--CcceeeEEecCcEEEeccCCCCChhhhccc
Confidence 4555667888865 999999999999999985 554566999999999999999976543333
No 83
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.31 E-value=0.045 Score=50.76 Aligned_cols=88 Identities=19% Similarity=0.253 Sum_probs=54.8
Q ss_pred cCCceEEEeeccccCcc--------cC-cc-eEEEEEEEeC-Cc-cccceecCCCCEEEEEEeCEEEEEEEecC------
Q 028365 64 IINAAVTPAFVAQFPAV--------NG-LG-LSLARLDLAK-GG-VIPIHTHPAASEILLVVHGCITAGFISSS------ 125 (210)
Q Consensus 64 ~~gg~~~~~~~~~~P~l--------~~-~g-is~~~v~l~p-gg-~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~------ 125 (210)
..|-+++.++++.|-.= .. .| +--+.+.+.| |+ -++|||- +-.-++.=++|+=...+-.|.
T Consensus 285 q~~cSiqllnPqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHyD-dIeaFvlQvEGrK~Wrly~P~~~~eel 363 (629)
T KOG3706|consen 285 QKGCSIQLLNPQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHYD-DIEAFVLQVEGRKHWRLYHPTVPLEEL 363 (629)
T ss_pred hcCceEEeeCchhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCchh-hhhhhhheeccceeeEeecCCCcHhhh
Confidence 35667777777665320 00 01 1112344444 55 3899998 445666678998776665542
Q ss_pred -------------CCeEEEEEEcCCCEEEECCCCeeEEEe
Q 028365 126 -------------ANTVYVKTLKKGDIMIFPQGLLHFQVN 152 (210)
Q Consensus 126 -------------~~~~~~~~l~~GDv~~~P~g~~H~~~N 152 (210)
+.-++...|++||++|||+|.+|....
T Consensus 364 ~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 364 ALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred hhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 122345689999999999999996643
No 84
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=93.26 E-value=2.6 Score=32.93 Aligned_cols=100 Identities=11% Similarity=0.029 Sum_probs=62.6
Q ss_pred ccCCceEEEeeccccCccc------CcceEEEEEEEeCCccccceecCCCCEEEEEEeC-EEEEEEEecCCCeEEEEEE-
Q 028365 63 SIINAAVTPAFVAQFPAVN------GLGLSLARLDLAKGGVIPIHTHPAASEILLVVHG-CITAGFISSSANTVYVKTL- 134 (210)
Q Consensus 63 ~~~gg~~~~~~~~~~P~l~------~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G-~~~v~vv~~~~~~~~~~~l- 134 (210)
-+.||..++.......... ....+.-..-+.++....+|.= +++|+.+...| .+++.++++ +++..+..|
T Consensus 13 HpEGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~-dg~~~~~~LG 90 (139)
T PF06172_consen 13 HPEGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDP-DGSYETVVLG 90 (139)
T ss_dssp BTTSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECT-TSTEEEEEES
T ss_pred CCCCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcC-CCCeEEEEEC
Confidence 4578888877655432221 1112333344677666666665 67999999999 688999988 665555566
Q ss_pred ---cCCCE--EEECCCCeeEEEeCCCCCEEEEEEe
Q 028365 135 ---KKGDI--MIFPQGLLHFQVNSGADGALGFVSF 164 (210)
Q Consensus 135 ---~~GDv--~~~P~g~~H~~~N~g~~~a~~~~~f 164 (210)
.+|+. ++||.|......-.+...-.+++.-
T Consensus 91 ~d~~~g~~~q~vVp~G~W~aa~l~~~~~y~Lvsc~ 125 (139)
T PF06172_consen 91 PDLAAGERPQVVVPAGTWQAAELEPEGDYSLVSCT 125 (139)
T ss_dssp STTCTTEBSEEEE-TTSEEEEEECESSSEEEEEEE
T ss_pred CCCCCCceEEEEECCCEEEEccccCCCCEEEEEEE
Confidence 34555 9999999887765555556665443
No 85
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=93.11 E-value=0.49 Score=39.89 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=54.6
Q ss_pred CcceEEEEEEEeCCcccc-ceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEE
Q 028365 82 GLGLSLARLDLAKGGVIP-IHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGAL 159 (210)
Q Consensus 82 ~~gis~~~v~l~pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~ 159 (210)
..+|-+..+.++||+.+| .-+|- -.-=.||++|++...+ ++..+ .+++||.+.+-+-.+.+....|.....
T Consensus 179 r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrL----n~dwv--~V~aGD~mwm~A~cpQacyagG~g~fr 250 (264)
T COG3257 179 RFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRL----NNNWV--PVEAGDYIWMGAYCPQACYAGGRGAFR 250 (264)
T ss_pred CcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEee----cCceE--EeecccEEEeeccChhhhccCCCCceE
Confidence 456888999999999754 33442 2345799999999998 66655 999999999999888888776666333
No 86
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=93.01 E-value=0.63 Score=38.63 Aligned_cols=79 Identities=23% Similarity=0.248 Sum_probs=44.6
Q ss_pred EEEEEEeCCccccceecCCC--CEEEEEE--eCEEEEEEEecCC-----------------CeEEEEEEcCCCEEEECCC
Q 028365 87 LARLDLAKGGVIPIHTHPAA--SEILLVV--HGCITAGFISSSA-----------------NTVYVKTLKKGDIMIFPQG 145 (210)
Q Consensus 87 ~~~v~l~pgg~~~pH~Hp~a--~Ei~yVl--~G~~~v~vv~~~~-----------------~~~~~~~l~~GDv~~~P~g 145 (210)
+-.+.+++|+....|.||++ +=..||. .|.....+.++.. ...+...-++||+++||.-
T Consensus 98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~ 177 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESW 177 (201)
T ss_pred EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCC
Confidence 34456788999999999985 2223333 1222222222210 0011124489999999999
Q ss_pred CeeEEEeCCCCCEEEEEEec
Q 028365 146 LLHFQVNSGADGALGFVSFN 165 (210)
Q Consensus 146 ~~H~~~N~g~~~a~~~~~f~ 165 (210)
+.|.+.-...+.-++-.+||
T Consensus 178 L~H~v~p~~~~~~RISiSFN 197 (201)
T TIGR02466 178 LRHEVPPNESEEERISVSFN 197 (201)
T ss_pred CceecCCCCCCCCEEEEEEe
Confidence 99988643333333334454
No 87
>COG1741 Pirin-related protein [General function prediction only]
Probab=92.74 E-value=0.39 Score=41.87 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=45.7
Q ss_pred EEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECC--CCeeEEEeC
Q 028365 89 RLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQ--GLLHFQVNS 153 (210)
Q Consensus 89 ~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~--g~~H~~~N~ 153 (210)
...+.||.-++||-|.+-.=+.||++|+++-.- . .|. ...+++||+-.+-+ |+.|.-.|.
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrD--S-~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~ 109 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHRD--S-LGN--KGVIRPGDVQWMTAGSGIVHSEMNP 109 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEee--c-CCc--eeeecccceeEEcCCCceeecccCC
Confidence 345889999999999774455689999977663 3 345 34899999977765 688988886
No 88
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=92.65 E-value=1.7 Score=33.49 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=35.1
Q ss_pred CCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCC
Q 028365 106 ASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGA 155 (210)
Q Consensus 106 a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~ 155 (210)
..-+.+.++|...+.. +++.. .+.+||+++++.+.++.....+.
T Consensus 55 ~~~l~~~~~G~~~~~~----~g~~~--~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 55 HYLLVLPLSGSARIEQ----GGREV--ELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred EEEEEEEccCCEEEEE----CCEEE--EEcCCeEEEEcCCCCEEEEECCC
Confidence 3456678889988887 78855 99999999999999987765433
No 89
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=92.58 E-value=1.3 Score=38.77 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=42.1
Q ss_pred ceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEE
Q 028365 84 GLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQV 151 (210)
Q Consensus 84 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~ 151 (210)
.+.+.++++.... . ........+++|++|++++.. ++..+ .+++|+.+++|++...+..
T Consensus 234 ~F~~~~~~~~~~~--~-~~~~~~~~il~v~~G~~~i~~----~~~~~--~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKA--E-FIQQQSALILSVLEGSGRIKS----GGKTL--PLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCce--e-eccCCCcEEEEEEcceEEEEE----CCEEE--EEecccEEEEccCCccEEE
Confidence 4667777765432 1 122246889999999998865 56644 8999999999999866544
No 90
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=92.27 E-value=0.47 Score=39.30 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=59.0
Q ss_pred ceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEE
Q 028365 84 GLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVS 163 (210)
Q Consensus 84 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~ 163 (210)
...++++.+.||..+|-|.|- ..|...|++|... ++ +| ++.+||+..-+.++.|.-.-..+.++..+++
T Consensus 127 s~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~s----de-~G-----~y~vgD~~~~d~~v~H~piv~~~~eClcl~a 195 (216)
T COG3806 127 SRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAFS----DE-NG-----EYLVGDFTLADGTVQHSPIVLPPGECLCLAA 195 (216)
T ss_pred CceeEEEEeccCccccccccc-ceEEEEEEeeccc----cC-CC-----ccccCceeecCCccccccccCCCCCceEEEE
Confidence 468899999999999999995 5999999999742 32 23 6789999999999999865566778888887
Q ss_pred ecC
Q 028365 164 FNS 166 (210)
Q Consensus 164 f~s 166 (210)
+..
T Consensus 196 l~~ 198 (216)
T COG3806 196 LDG 198 (216)
T ss_pred cCC
Confidence 764
No 91
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=92.20 E-value=2.2 Score=37.14 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=56.3
Q ss_pred cceEEEEEEEeCCc---cccceecCCCCEEEEE---EeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCC
Q 028365 83 LGLSLARLDLAKGG---VIPIHTHPAASEILLV---VHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD 156 (210)
Q Consensus 83 ~gis~~~v~l~pgg---~~~pH~Hp~a~Ei~yV---l~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~ 156 (210)
-.+-+....+.||+ ..|||.|.+..|..+. -++...+.+..+ -++..-..++-+|+++.|+=.+|.- .|..
T Consensus 173 ~qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~-pdETrh~~v~n~~aVisP~wsih~g--~gt~ 249 (276)
T PRK00924 173 CQLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGE-PQETRHIVVHNEQAVISPSWSIHSG--VGTS 249 (276)
T ss_pred ccEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCC-ccceeeEEEECCCEEECCCcceecC--cCcc
Confidence 34667767779998 3799999977775542 222222332111 2343235899999999999999975 5677
Q ss_pred CEEEEEEecCCCC
Q 028365 157 GALGFVSFNSPNP 169 (210)
Q Consensus 157 ~a~~~~~f~s~~p 169 (210)
.-.||+..-.+|.
T Consensus 250 ~y~fiw~m~gen~ 262 (276)
T PRK00924 250 NYTFIWGMAGENQ 262 (276)
T ss_pred ccEEEEEecccCc
Confidence 8888887765554
No 92
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=91.97 E-value=0.94 Score=30.53 Aligned_cols=57 Identities=19% Similarity=0.157 Sum_probs=41.2
Q ss_pred EEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEe
Q 028365 90 LDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN 152 (210)
Q Consensus 90 v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N 152 (210)
..+.||....++-. +...+-|.+|++.++. ++.....-|++||.+.+++|..-++..
T Consensus 2 ~~L~~g~~~~lr~~--~~~~l~v~~G~vWlT~----~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAA--AGQRLRVESGRVWLTR----EGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcC--CCcEEEEccccEEEEC----CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 35667776666655 3455999999999987 333334599999999999997765543
No 93
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=91.82 E-value=0.82 Score=36.78 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=44.8
Q ss_pred eEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEE--EecC---CCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCE
Q 028365 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGF--ISSS---ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGA 158 (210)
Q Consensus 85 is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~v--v~~~---~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a 158 (210)
++++.+++.||...|+|-| +..-++=|+.|.=.-.+ .+.+ ......+...+|++- ..+|.+|.+.|.+....
T Consensus 73 ltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs 149 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRS 149 (191)
T ss_pred EEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCcc
Confidence 5888999999999999999 55788888888633221 1110 001113356666666 33366666666665543
No 94
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.79 E-value=2 Score=38.67 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=43.6
Q ss_pred ccc-cceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEE
Q 028365 96 GVI-PIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGF 161 (210)
Q Consensus 96 g~~-~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~ 161 (210)
+|. ..-...+.+|++|+.+|++++.- .-. ..++++||..+||+|+.-.++-.+.+ +..+
T Consensus 135 sm~~~~f~NADge~Livpq~G~l~l~t----e~G--~l~v~pgeiavIPRG~~frve~~~~~-~rgy 194 (427)
T COG3508 135 SMTKRFFRNADGELLIVPQQGELRLKT----ELG--VLEVEPGEIAVIPRGTTFRVELKDGE-ARGY 194 (427)
T ss_pred cchhhhhhcCCCCEEEEeecceEEEEE----eec--eEEecCCcEEEeeCCceEEEEecCCc-eEEE
Confidence 444 45567788999999999998775 223 33999999999999999877765444 4443
No 95
>PLN02288 mannose-6-phosphate isomerase
Probab=91.39 E-value=0.72 Score=42.17 Aligned_cols=58 Identities=17% Similarity=0.333 Sum_probs=40.5
Q ss_pred ceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCC
Q 028365 84 GLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGL 146 (210)
Q Consensus 84 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~ 146 (210)
.+++.++++.++.......+ +..++++|++|++++.. ++...+..+++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~----~~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLST----GSSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEec----CCccceEEEeceeEEEEeCCC
Confidence 36777788877754222213 45899999999998864 333222479999999999864
No 96
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=90.98 E-value=1.6 Score=31.07 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=41.2
Q ss_pred CccccceecCCCCE--EEEEEeCEEEEEEEecCCCe-EEEEEEcCCCEEEECCCCeeEEEeCCCC
Q 028365 95 GGVIPIHTHPAASE--ILLVVHGCITAGFISSSANT-VYVKTLKKGDIMIFPQGLLHFQVNSGAD 156 (210)
Q Consensus 95 gg~~~pH~Hp~a~E--i~yVl~G~~~v~vv~~~~~~-~~~~~l~~GDv~~~P~g~~H~~~N~g~~ 156 (210)
.++...|.- .+-. .+-|++|++.+...+++++. .....+.+|+..+|++...|.+.-.+++
T Consensus 13 ~~l~~~H~T-K~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D 76 (82)
T PF09313_consen 13 AALLERHNT-KAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDD 76 (82)
T ss_dssp GGGGSSBCC-STTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT
T ss_pred HHHHhhcCC-CCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCC
Confidence 345566644 3344 45699999999998763211 1234899999999999999999887653
No 97
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.01 E-value=2.7 Score=38.06 Aligned_cols=72 Identities=19% Similarity=0.329 Sum_probs=50.2
Q ss_pred eEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCC-CeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEE
Q 028365 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVS 163 (210)
Q Consensus 85 is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~-~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~ 163 (210)
+.+.+++++.|.....-.- +..-+..|++|++++.. + +..+ .+++||+++||+...-.+. ..+++...+-+
T Consensus 333 F~v~~~~v~~g~~~~~~~~-~~~SIllv~~G~g~l~~----~t~~~~--~v~rG~V~fI~a~~~i~~~-~~sd~~~~yrA 404 (411)
T KOG2757|consen 333 FAVLETKVPTGESYKFPGV-DGPSILLVLKGSGILKT----DTDSKI--LVNRGDVLFIPANHPIHLS-SSSDPFLGYRA 404 (411)
T ss_pred eeEEEeecCCCceEEeecC-CCceEEEEEecceEEec----CCCCce--eeccCcEEEEcCCCCceee-ccCcceeeeec
Confidence 5777888888765333344 35889999999998886 3 5545 9999999999998765332 33444544444
Q ss_pred e
Q 028365 164 F 164 (210)
Q Consensus 164 f 164 (210)
|
T Consensus 405 f 405 (411)
T KOG2757|consen 405 F 405 (411)
T ss_pred c
Confidence 4
No 98
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=87.70 E-value=6.7 Score=31.50 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=38.0
Q ss_pred EEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEE
Q 028365 87 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIF 142 (210)
Q Consensus 87 ~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~ 142 (210)
+....+++|..+-..=. ....+.+|++|.+++...+.++.+.....+.+||++-.
T Consensus 20 ~~~~~~~kg~~l~~~g~-~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 20 CHIHKYPAKSTLIHAGE-KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred CeEEEeCCCCEEEeCCC-CCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 34567788876543223 35789999999999987665344455567899999733
No 99
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=87.43 E-value=14 Score=31.86 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=42.2
Q ss_pred eEEEEEEEeCCcc---ccceecCCC--------CEEEEEE----eCEEEEEEEecC--CCeEEEEEEcCCCEEEECCCCe
Q 028365 85 LSLARLDLAKGGV---IPIHTHPAA--------SEILLVV----HGCITAGFISSS--ANTVYVKTLKKGDIMIFPQGLL 147 (210)
Q Consensus 85 is~~~v~l~pgg~---~~pH~Hp~a--------~Ei~yVl----~G~~~v~vv~~~--~~~~~~~~l~~GDv~~~P~g~~ 147 (210)
+-+..+. .|+|. .|||.|++. .|+.|.. +|-+.-.+.++. .++. ..++-||++++|+|..
T Consensus 151 Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~--~~V~~~d~V~iP~gyH 227 (261)
T PF04962_consen 151 LVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEH--YVVRNGDAVLIPSGYH 227 (261)
T ss_dssp -EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEE--EEEETTEEEEESTTB-
T ss_pred EEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEE--EEEECCCEEEeCCCCC
Confidence 5566665 66663 799999763 4555542 243332233221 2344 4999999999999933
Q ss_pred eEEE-eCCCCCEEEEEEecCCC
Q 028365 148 HFQV-NSGADGALGFVSFNSPN 168 (210)
Q Consensus 148 H~~~-N~g~~~a~~~~~f~s~~ 168 (210)
-+. ..|.. ..++.+.-..+
T Consensus 228 -p~~aapGy~-~Yylw~maG~~ 247 (261)
T PF04962_consen 228 -PVVAAPGYD-MYYLWVMAGEN 247 (261)
T ss_dssp -SEEEEEESS-EEEEEEEESSS
T ss_pred -CcCcCCCcC-cEEEEEEEcCC
Confidence 332 23333 44666665544
No 100
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=87.33 E-value=1.3 Score=39.97 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=40.9
Q ss_pred EEeCCccccceecCCCCEEEEEEeCEEEEEEEec-C---------------CCeEEEEEEcCCCEEEECCCCeeEEEeC
Q 028365 91 DLAKGGVIPIHTHPAASEILLVVHGCITAGFISS-S---------------ANTVYVKTLKKGDIMIFPQGLLHFQVNS 153 (210)
Q Consensus 91 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~-~---------------~~~~~~~~l~~GDv~~~P~g~~H~~~N~ 153 (210)
-..+||.+.+||-+. +-+++=..|+=+..+... + ..-....++.|||+.|+|+|..|+-...
T Consensus 125 ~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 125 FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 347788999999875 555555555545554211 0 0001134799999999999999987664
No 101
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=86.74 E-value=6.9 Score=34.12 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=38.6
Q ss_pred CCCEEE-EEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEe--CCCCCEEEEE
Q 028365 105 AASEIL-LVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN--SGADGALGFV 162 (210)
Q Consensus 105 ~a~Ei~-yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N--~g~~~a~~~~ 162 (210)
...|+. +.+.|++.+.+ +++.+ .+.+.|++++|+|.--.... ....++.+..
T Consensus 72 ~rrE~giV~lgG~~~V~v----dG~~~--~l~~~d~LYVp~G~~~v~~as~~a~~paef~i 126 (276)
T PRK00924 72 ERRELGIINIGGAGTVTV----DGETY--ELGHRDALYVGKGAKEVVFASADAANPAKFYL 126 (276)
T ss_pred CCcEEEEEEccceEEEEE----CCEEE--ecCCCcEEEECCCCcEEEEEecCCCCCcEEEE
Confidence 346754 57889999998 78877 79999999999997765543 2345666654
No 102
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=85.76 E-value=2.4 Score=28.72 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=31.9
Q ss_pred EEeCCccc-cceecCCCCEEEEEEeCEEEEEEEecCCCe-EEEEEEcCCCEE
Q 028365 91 DLAKGGVI-PIHTHPAASEILLVVHGCITAGFISSSANT-VYVKTLKKGDIM 140 (210)
Q Consensus 91 ~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~-~~~~~l~~GDv~ 140 (210)
++++|..+ ..+- ....+.+|++|.+.+...+. +++ .....+.+||++
T Consensus 3 ~~~~g~~i~~~g~--~~~~~~~i~~G~v~~~~~~~-~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGD--PCDHIYIILSGEVKVSSINE-DGKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTS--BESEEEEEEESEEEEEEETT-TSEEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCC--cCCEEEEEEECceEEEecee-cceeeeecceeeeccc
Confidence 45555532 3332 35799999999999998776 444 335678888875
No 103
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=84.98 E-value=4.1 Score=36.13 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=42.5
Q ss_pred ceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEE
Q 028365 84 GLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQV 151 (210)
Q Consensus 84 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~ 151 (210)
.+++.+.++..-... . +.+...+++|++|++++.. +++.+ .|++|+.+++|....-+..
T Consensus 241 ~F~l~~~~i~~~~~~-~--~~~~~~il~v~eG~~~l~~----~~~~~--~l~~G~s~~ipa~~~~~~i 299 (312)
T COG1482 241 DFALYKWDISGTAEF-I--KQESFSILLVLEGEGTLIG----GGQTL--KLKKGESFFIPANDGPYTI 299 (312)
T ss_pred ceEEEEEeccChhhh-c--cCCCcEEEEEEcCeEEEec----CCEEE--EEcCCcEEEEEcCCCcEEE
Confidence 356666666541111 1 1236899999999999887 67866 9999999999998665543
No 104
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=84.72 E-value=10 Score=31.36 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=43.6
Q ss_pred ceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCee
Q 028365 84 GLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLH 148 (210)
Q Consensus 84 gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H 148 (210)
........+++|..+-..=. ....+.+|++|.+.+...++++.+.....+.+||++-+..+..+
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd-~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~ 98 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGE-PADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTH 98 (230)
T ss_pred cceeeeEEECCCCEEECCCC-CCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcC
Confidence 34566677888875433323 35789999999999998877444445556799998766554433
No 105
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=84.51 E-value=6.7 Score=27.22 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=37.7
Q ss_pred EEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEEC
Q 028365 88 ARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFP 143 (210)
Q Consensus 88 ~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P 143 (210)
....+.+|..+ .+-......+.+|++|.+.+...+.++.+.....+.+||.+-..
T Consensus 18 ~~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 34567777754 33444557899999999998876553445556688899976443
No 106
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.88 E-value=4.5 Score=29.04 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=33.9
Q ss_pred CCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEE
Q 028365 105 AASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQV 151 (210)
Q Consensus 105 ~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~ 151 (210)
.+.|++.|+.|.+.+.+.. ... .+...+|+.+.+|.+.-..++
T Consensus 40 a~~E~Mtvv~Gal~v~lpg--s~d--Wq~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPG--SDD--WQVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred CCceEEEEEeeEEEEEcCC--Ccc--cEEecCCceEEcCCCCeEEEE
Confidence 4689999999999998832 234 569999999999998665443
No 107
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=83.45 E-value=5.7 Score=31.76 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=35.2
Q ss_pred EEEEeCCccccceecC--CCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEE
Q 028365 89 RLDLAKGGVIPIHTHP--AASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIF 142 (210)
Q Consensus 89 ~v~l~pgg~~~pH~Hp--~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~ 142 (210)
.+.+++|..+-. -.. .+..+.+|++|.+++...++++.+.....+.+||++=.
T Consensus 8 ~~~~~kg~~l~~-~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 8 TVTYRPGAVILY-PGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGE 62 (202)
T ss_pred eeEecCCCEEEc-CCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeech
Confidence 355666664322 222 24689999999999998877334455556799998644
No 108
>PHA02984 hypothetical protein; Provisional
Probab=80.69 E-value=11 Score=32.68 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=40.2
Q ss_pred CEEE--EEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEE
Q 028365 107 SEIL--LVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGF 161 (210)
Q Consensus 107 ~Ei~--yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~ 161 (210)
.|.+ .+++|+.++.... +++..+..+++||.+.+.-+.-|.... .+..+.++
T Consensus 92 nEy~FvlCl~G~~~I~~~~--~~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~ 145 (286)
T PHA02984 92 NEYMFVLCLNGKTSIECFN--KGSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLA 145 (286)
T ss_pred ccEEEEEEcCCeEEEEEec--CCceeeeEEecCceEEEEccceEEEEe-CCCceEEE
Confidence 4544 4789999999865 567778899999999999999998865 44555443
No 109
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=79.03 E-value=9.3 Score=26.40 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=34.8
Q ss_pred EEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEE
Q 028365 88 ARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMI 141 (210)
Q Consensus 88 ~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~ 141 (210)
....+++|..+-. -......+.++++|.+.+...++++.+.....+.+|+++-
T Consensus 18 ~~~~~~~g~~l~~-~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g 70 (115)
T cd00038 18 EERRFPAGEVIIR-QGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFG 70 (115)
T ss_pred eeeeeCCCCEEEc-CCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcC
Confidence 3456777775422 2223478999999999998766533345556788888763
No 110
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=78.35 E-value=14 Score=31.90 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=44.1
Q ss_pred eEEEEEEEeCCccccceecCCCCEEE-EEEeCEEEEEEEecCCC-eEEEEEEcCC--------CEEEECCCCeeEEEeCC
Q 028365 85 LSLARLDLAKGGVIPIHTHPAASEIL-LVVHGCITAGFISSSAN-TVYVKTLKKG--------DIMIFPQGLLHFQVNSG 154 (210)
Q Consensus 85 is~~~v~l~pgg~~~pH~Hp~a~Ei~-yVl~G~~~v~vv~~~~~-~~~~~~l~~G--------Dv~~~P~g~~H~~~N~g 154 (210)
+.+..++|++|.....-.- + .|+. +.++|++++.+ ++ +.+ .+..- |++++|+|.---+...+
T Consensus 27 ~~~~~l~L~~g~~~~~~~~-~-~E~~vv~l~G~~~v~~----~g~~~~--~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~ 98 (261)
T PF04962_consen 27 MGFGVLRLEAGESLEFELE-R-RELGVVNLGGKATVTV----DGEEFY--ELGGRESVFDGPPDALYVPRGTKVVIFAST 98 (261)
T ss_dssp BECCCEEEECCHCCCCCCC-S-EEEEEEEESSSEEEEE----TTEEEE--EE-TTSSGGGS--EEEEE-TT--EEEEESS
T ss_pred cceEEEEecCCCEEeccCC-C-cEEEEEEeCCEEEEEe----CCceEE--EecccccccCCCCcEEEeCCCCeEEEEEcC
Confidence 3555688899887655444 3 4555 57899999998 66 534 77776 99999999987777643
Q ss_pred CCCEEEE
Q 028365 155 ADGALGF 161 (210)
Q Consensus 155 ~~~a~~~ 161 (210)
+ +.+.
T Consensus 99 ~--ae~~ 103 (261)
T PF04962_consen 99 D--AEFA 103 (261)
T ss_dssp T--EEEE
T ss_pred C--CEEE
Confidence 3 5544
No 111
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=76.44 E-value=6.5 Score=27.85 Aligned_cols=64 Identities=23% Similarity=0.260 Sum_probs=37.3
Q ss_pred EEEeCCccccceecC---CCCEEEEE--Ee-CE-----EEEEEEec--CCCeEEEEE-----EcCCCEEEECC-CCeeEE
Q 028365 90 LDLAKGGVIPIHTHP---AASEILLV--VH-GC-----ITAGFISS--SANTVYVKT-----LKKGDIMIFPQ-GLLHFQ 150 (210)
Q Consensus 90 v~l~pgg~~~pH~Hp---~a~Ei~yV--l~-G~-----~~v~vv~~--~~~~~~~~~-----l~~GDv~~~P~-g~~H~~ 150 (210)
....+|+...||+.. ....+.++ ++ -. +...+.+. .++...... .++|++++|+. ...|.+
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 456889999999975 33333333 44 11 33333221 011111123 88999999999 999998
Q ss_pred EeC
Q 028365 151 VNS 153 (210)
Q Consensus 151 ~N~ 153 (210)
...
T Consensus 84 ~~v 86 (100)
T PF13640_consen 84 TPV 86 (100)
T ss_dssp EEE
T ss_pred ccc
Confidence 776
No 112
>PHA02890 hypothetical protein; Provisional
Probab=75.85 E-value=18 Score=31.21 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=36.7
Q ss_pred CEEEE--EEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEe
Q 028365 107 SEILL--VVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN 152 (210)
Q Consensus 107 ~Ei~y--Vl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N 152 (210)
.|.+| +++|+.++.+.. +++..+..+++||.+.+.-+.-|....
T Consensus 91 nEy~FVlCL~Gs~~In~~~--~d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 91 IECFFVACIEGSCKINVNI--GDREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred ccEEEEEEeCCeEEEEEec--CCceeeeeeecCceEEEEccceEEEEc
Confidence 45444 789999999855 677788899999999999999998865
No 113
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=74.45 E-value=34 Score=27.45 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=42.4
Q ss_pred ccceecCCCCEEEEEEeCEEEEEEEecCC----CeEEEEEEcCCCEEEECCCCeeEEE
Q 028365 98 IPIHTHPAASEILLVVHGCITAGFISSSA----NTVYVKTLKKGDIMIFPQGLLHFQV 151 (210)
Q Consensus 98 ~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~----~~~~~~~l~~GDv~~~P~g~~H~~~ 151 (210)
..+-.||..+|.++-+.|+-.+-++.+.+ ++.......+|+.+..-+|+.|...
T Consensus 71 ~~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl 128 (162)
T PRK03606 71 RMLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPL 128 (162)
T ss_pred eeEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccc
Confidence 44556887899999999998888887532 2344559999999999999999654
No 114
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=73.30 E-value=11 Score=30.94 Aligned_cols=52 Identities=6% Similarity=0.015 Sum_probs=36.2
Q ss_pred EEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEE
Q 028365 90 LDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIF 142 (210)
Q Consensus 90 v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~ 142 (210)
..+++|..+ .+-......+.+|++|.+++...+.++.+.....+.+||++-.
T Consensus 34 ~~~~kge~l-~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 34 FHFLAREYI-VQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGE 85 (226)
T ss_pred eeeCCCCEE-EcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEe
Confidence 456666654 2223345789999999999998877444555567899998654
No 115
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=72.67 E-value=8 Score=34.53 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=31.0
Q ss_pred eEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEecCCCCCc
Q 028365 128 TVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGL 171 (210)
Q Consensus 128 ~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~s~~pg~ 171 (210)
+-+.-..+||+.+++|.|..|.+.|...+-|+.-..-+..|.+.
T Consensus 261 kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~ 304 (407)
T KOG2130|consen 261 KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPF 304 (407)
T ss_pred CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCce
Confidence 34455889999999999999999998666554433233445443
No 116
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=71.20 E-value=4.1 Score=36.90 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=45.1
Q ss_pred Cccccce---ecCCCCEEEEEEeCEEEEEEEecCC------------------------CeEEEEEEcCCCEEEECCCCe
Q 028365 95 GGVIPIH---THPAASEILLVVHGCITAGFISSSA------------------------NTVYVKTLKKGDIMIFPQGLL 147 (210)
Q Consensus 95 gg~~~pH---~Hp~a~Ei~yVl~G~~~v~vv~~~~------------------------~~~~~~~l~~GDv~~~P~g~~ 147 (210)
|...+.| +| +.-+...+-|.=+.-+..+.. +...+-.=+||+++++|.|..
T Consensus 208 gSwtp~HaDVf~--s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW~ 285 (427)
T KOG2131|consen 208 GSWTPFHADVFH--SPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGWH 285 (427)
T ss_pred CCCCccchhhhc--CCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCccc
Confidence 4568999 88 468889999988877776621 111122347999999999999
Q ss_pred eEEEeCCCC
Q 028365 148 HFQVNSGAD 156 (210)
Q Consensus 148 H~~~N~g~~ 156 (210)
|.+.|.+++
T Consensus 286 hQV~NL~dT 294 (427)
T KOG2131|consen 286 HQVLNLGDT 294 (427)
T ss_pred cccccccce
Confidence 999999886
No 117
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=71.18 E-value=17 Score=31.79 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=37.3
Q ss_pred CEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCC
Q 028365 107 SEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADG 157 (210)
Q Consensus 107 ~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~ 157 (210)
.-++++.+|.+.+.- + +++.. .+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~--~-~g~~l--~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITT--S-SGEYI--TASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEe--C-CCceE--EeCCCeEEEEeCCcEEEEEecccCC
Confidence 578999999998875 2 34434 9999999999999999998876554
No 118
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=71.12 E-value=51 Score=26.27 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=44.3
Q ss_pred ceEEEEEEEeCCc--cccceecCCCCEEEEEEeCEE-EEEEEecCC-----CeEEEEEEcCCCEEEECCCCeeEEEeCCC
Q 028365 84 GLSLARLDLAKGG--VIPIHTHPAASEILLVVHGCI-TAGFISSSA-----NTVYVKTLKKGDIMIFPQGLLHFQVNSGA 155 (210)
Q Consensus 84 gis~~~v~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~-~v~vv~~~~-----~~~~~~~l~~GDv~~~P~g~~H~~~N~g~ 155 (210)
++++.+..-.+.- +..+=.|+..+|.++-+.|+. .+-++.+.+ ++.....+.+|+.+.+-+|+.|...-.=+
T Consensus 56 ~~si~~~~~~~~p~~v~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~ 135 (165)
T PF04115_consen 56 GISIFRAQPRELPFEVSMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLD 135 (165)
T ss_dssp EEEEEEEEBE-SSEEEEEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESS
T ss_pred EEEEEEeeccCCccccceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccC
Confidence 3566655433322 234556777899999999988 555555422 23445599999999999999997543334
Q ss_pred CCEEEEEE
Q 028365 156 DGALGFVS 163 (210)
Q Consensus 156 ~~a~~~~~ 163 (210)
++..++.+
T Consensus 136 ~~~~f~vv 143 (165)
T PF04115_consen 136 EPADFLVV 143 (165)
T ss_dssp SEEEEEEE
T ss_pred CcceEEEE
Confidence 55665554
No 119
>PHA00672 hypothetical protein
Probab=70.25 E-value=48 Score=25.72 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=59.2
Q ss_pred eEEEeeccccCccc--CcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCC
Q 028365 68 AVTPAFVAQFPAVN--GLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQG 145 (210)
Q Consensus 68 ~~~~~~~~~~P~l~--~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g 145 (210)
.+.....-++|-.. ..|+.+..++++.|....=-.|. .|-+.+.+|.+.+.. +++.. .|+.=.++.-|+|
T Consensus 28 a~a~~pQv~ipv~H~Fs~GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~t----dge~~--rl~g~~~i~~~aG 99 (152)
T PHA00672 28 ALAELPQVEIPTAHLFHAGVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFI----GGEAV--ELRGYHVIPASAG 99 (152)
T ss_pred HhhcCCcccchhhhhhccceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEe----CCcEE--EEecceeeecCCC
Confidence 33344444455332 35789999999999988877883 466699999999987 66744 8888888888888
Q ss_pred CeeEEEeCCCCCEE
Q 028365 146 LLHFQVNSGADGAL 159 (210)
Q Consensus 146 ~~H~~~N~g~~~a~ 159 (210)
.-.....-.++...
T Consensus 100 ~KragyAHeDT~wt 113 (152)
T PHA00672 100 RKQAFVAHADTDLT 113 (152)
T ss_pred cccceeeeccceEE
Confidence 77655554444443
No 120
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=68.73 E-value=15 Score=30.95 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=40.3
Q ss_pred CCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEe
Q 028365 94 KGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN 152 (210)
Q Consensus 94 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N 152 (210)
-.|....||. +-..+|++|+.+... .++......+|||....|+|.....+-
T Consensus 110 TeGhsGrh~a---d~y~tIL~G~~~~~~----~g~~~~evy~pGd~~~l~rg~a~~y~m 161 (216)
T PF04622_consen 110 TEGHSGRHWA---DDYFTILSGEQWAWS----PGSLEPEVYKPGDSHHLPRGEAKQYQM 161 (216)
T ss_pred CCCCCcceEe---eeEEEEEEEEEEEEc----CCCCCceEeccCCEEEecCceEEEEEe
Confidence 3456777774 678899999987765 455556799999999999999886654
No 121
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=68.23 E-value=14 Score=29.11 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=27.4
Q ss_pred CCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEE
Q 028365 106 ASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMI 141 (210)
Q Consensus 106 a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~ 141 (210)
...+.+|++|.+.+...++++.+.....+.+||++=
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee
Confidence 467889999999999877733444456789999763
No 122
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=67.31 E-value=3.2 Score=36.31 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=17.3
Q ss_pred EEEEcCCCEEEECCCCeeE
Q 028365 131 VKTLKKGDIMIFPQGLLHF 149 (210)
Q Consensus 131 ~~~l~~GDv~~~P~g~~H~ 149 (210)
...+++||++++|+|.+|.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred ccccCCCCEEEeCCCCccc
Confidence 4589999999999999997
No 123
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=66.11 E-value=25 Score=27.49 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=39.4
Q ss_pred CEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEe---CCCCCEEEEE
Q 028365 107 SEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN---SGADGALGFV 162 (210)
Q Consensus 107 ~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N---~g~~~a~~~~ 162 (210)
.=+++|++|+=++.+ +++.+ ...+|+.++.+..++-..+- ..++|...+.
T Consensus 24 p~i~~vlQG~K~~~~----g~~~~--~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~ 76 (155)
T PF06719_consen 24 PSICIVLQGSKRVHL----GDQVF--EYDAGQYLVSSVDLPVESEVVEASPEEPYLALS 76 (155)
T ss_pred CeEEEEEeeeEEEEE----CCceE--EecCCcEEEecCCCcEEEEEeeccCCCCEEEEE
Confidence 678999999999998 77867 99999999999999875543 3345555543
No 124
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=65.29 E-value=69 Score=25.54 Aligned_cols=101 Identities=21% Similarity=0.199 Sum_probs=55.9
Q ss_pred EEeCCccccceecCC-CCEEEEEEeCE-EEEEEEecCCCeEEEE----EEcCCCE--EEECCCCee-EEEeCCCCCEEEE
Q 028365 91 DLAKGGVIPIHTHPA-ASEILLVVHGC-ITAGFISSSANTVYVK----TLKKGDI--MIFPQGLLH-FQVNSGADGALGF 161 (210)
Q Consensus 91 ~l~pgg~~~pH~Hp~-a~Ei~yVl~G~-~~v~vv~~~~~~~~~~----~l~~GDv--~~~P~g~~H-~~~N~g~~~a~~~ 161 (210)
-++++. .-|||.. +.|+.+...|. +.+.++. +|+.... .++.|+. +++|.|..- .....|. +-.++
T Consensus 50 LLe~~~--~s~~HRv~a~eiwHf~ag~pl~~~l~~--dG~~~s~~LG~d~~~Ge~~Q~vVP~g~w~aS~~~~g~-~~tLV 124 (162)
T COG3542 50 LLEEDN--ISAWHRVTADEIWHFYAGAPLELHLSE--DGGAESFTLGPDLEKGERPQYVVPAGTWWASAVSLGE-DYTLV 124 (162)
T ss_pred EecCCc--cchheecchhheEEEecCCceEEEEEe--CCCeEEEEecccccCCceeEEEEeCCcEEEEEEecCC-CceEE
Confidence 356666 4566644 89999999984 7777766 3433222 5788888 899999543 3333333 44444
Q ss_pred EEecCCCCCceechHhHHhhcCCHHHHHHhcCCCHHHHHHH
Q 028365 162 VSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRL 202 (210)
Q Consensus 162 ~~f~s~~pg~~~i~~~~f~s~~p~~vla~~f~~~~~~v~~l 202 (210)
...- .||+..-...++ =|.++|. .+--+++.++++
T Consensus 125 gCtV--aPGFdF~~Fela---~~~dlL~-~~p~~~~~ie~l 159 (162)
T COG3542 125 GCTV--APGFDFEDFELA---EPEDLLK-WYPGPAEAIERL 159 (162)
T ss_pred EEEe--cCCccchhcccc---Cchhhhh-cCCCcHHHHHHH
Confidence 4333 355442222222 1334333 344555555554
No 125
>PLN02868 acyl-CoA thioesterase family protein
Probab=64.95 E-value=30 Score=31.50 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=37.3
Q ss_pred EEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEE
Q 028365 88 ARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIF 142 (210)
Q Consensus 88 ~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~ 142 (210)
....+++|..+- +--.....+.+|++|++++...++ +++.....+++||++=.
T Consensus 32 ~~~~~~~Ge~I~-~~Gd~~~~lyiI~~G~V~v~~~~~-~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVV-REGEPGDGLYFIWKGEAEVSGPAE-EESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEE-eCCCcCceEEEEEeCEEEEEEECC-CCcEEEEEeCCCCEeeh
Confidence 345667766543 233346789999999999988766 44555568899998763
No 126
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=64.03 E-value=6.3 Score=34.98 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.5
Q ss_pred EEEEcCCCEEEECCCCeeEEE
Q 028365 131 VKTLKKGDIMIFPQGLLHFQV 151 (210)
Q Consensus 131 ~~~l~~GDv~~~P~g~~H~~~ 151 (210)
...|+|||++++|+|.+|...
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred EEecCCCCEEEecCCCceeec
Confidence 448999999999999999763
No 127
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=63.23 E-value=90 Score=27.83 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=47.8
Q ss_pred ccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEEecC
Q 028365 98 IPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNS 166 (210)
Q Consensus 98 ~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~f~s 166 (210)
...-+..+.+=+++-.+|.+.++- + -| +..+.++++-+||+|+-..+.-.|..+..++.++..
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~T--E-fG---rllV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~ 209 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWITT--E-FG---RLLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGA 209 (446)
T ss_pred cceeecCCCCEEEecccCcEEEEe--e-cc---ceeecccceEEeecccEEEEecCCCCcceEEEEecc
Confidence 455566676777777888887764 1 23 347999999999999998887778888888888763
No 128
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=61.98 E-value=33 Score=26.83 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=37.3
Q ss_pred EEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECC
Q 028365 87 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQ 144 (210)
Q Consensus 87 ~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~ 144 (210)
.....+++|..+-..--+ +.-+.+|++|.+.+...++++.+.....+.+||++-...
T Consensus 23 ~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHH
Confidence 344556666544333332 355888999999999887633344555789999976553
No 129
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=61.50 E-value=48 Score=27.09 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=34.4
Q ss_pred EEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEE
Q 028365 90 LDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIF 142 (210)
Q Consensus 90 v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~ 142 (210)
..+++|..+-. --.....+.+|++|.+++...++++.+.....+.+||++-.
T Consensus 40 ~~~~kge~l~~-~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFK-AGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeEC-CCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 35666664322 22235788999999999998776344445556689999753
No 130
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=61.02 E-value=30 Score=27.13 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=37.9
Q ss_pred cceecCCCCEEEEEEeCEEEEEEEecC-----------------CCeEEEEEEcCCCEEEECCCCeeEEE
Q 028365 99 PIHTHPAASEILLVVHGCITAGFISSS-----------------ANTVYVKTLKKGDIMIFPQGLLHFQV 151 (210)
Q Consensus 99 ~pH~Hp~a~Ei~yVl~G~~~v~vv~~~-----------------~~~~~~~~l~~GDv~~~P~g~~H~~~ 151 (210)
.+=.|.+-..+.|+++|+=.+++.... .+......|++|+..+|-++.+|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 445577778999999999888774321 01111458999999999999999754
No 131
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=59.67 E-value=8.9 Score=35.01 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=18.9
Q ss_pred EEEEEcCCCEEEECCCCeeEEE
Q 028365 130 YVKTLKKGDIMIFPQGLLHFQV 151 (210)
Q Consensus 130 ~~~~l~~GDv~~~P~g~~H~~~ 151 (210)
....|+|||++++|+|.+|..-
T Consensus 237 N~v~l~pGeaifipAg~~HAyl 258 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAYL 258 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEEc
Confidence 3458999999999999999753
No 132
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.24 E-value=5.4 Score=33.56 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=34.5
Q ss_pred cceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEE
Q 028365 83 LGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFI 122 (210)
Q Consensus 83 ~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv 122 (210)
-++|+...-++|++++|+|-||.-+-+.=++-|++.+.-.
T Consensus 73 D~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksy 112 (236)
T KOG4281|consen 73 DRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSY 112 (236)
T ss_pred CceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeec
Confidence 3578888899999999999999988888899999887644
No 133
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=52.81 E-value=50 Score=26.32 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=40.3
Q ss_pred ccceecCCCCEEEEEEeCEEEEEEEecCC------------------C-eEEEEEEcCCCEEEECCCCeeEEEeCCC
Q 028365 98 IPIHTHPAASEILLVVHGCITAGFISSSA------------------N-TVYVKTLKKGDIMIFPQGLLHFQVNSGA 155 (210)
Q Consensus 98 ~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~------------------~-~~~~~~l~~GDv~~~P~g~~H~~~N~g~ 155 (210)
..+-.|.+-..+-++++|+=.+++..... . ......|.+|+..+|=+|.+|.-.-...
T Consensus 61 ~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 61 KKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred cchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 44445666789999999997777654310 0 1225589999999999999996654433
No 134
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=52.42 E-value=62 Score=27.78 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=56.5
Q ss_pred cccCcceEEEEEEEeCCcc---ccceecCCCCEEEEEEe---CEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEe
Q 028365 79 AVNGLGLSLARLDLAKGGV---IPIHTHPAASEILLVVH---GCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN 152 (210)
Q Consensus 79 ~l~~~gis~~~v~l~pgg~---~~pH~Hp~a~Ei~yVl~---G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N 152 (210)
.+++-++++....++||.. .|+|.|.|..|..+... -+-.+.+... -++..-..++--+.++-|+=.+|.-
T Consensus 171 ~~~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGq-P~ETRHiv~~NEqAViSP~WSIHSG-- 247 (278)
T COG3717 171 VLESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQ-PQETRHIVMHNEQAVISPPWSIHSG-- 247 (278)
T ss_pred hhhhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCC-CCceeEEEEeccceeeCCCceeecC--
Confidence 3455567788888999995 69999999888654321 1222222221 1233333666677788888888864
Q ss_pred CCCCCEEEEEEecCCCCC
Q 028365 153 SGADGALGFVSFNSPNPG 170 (210)
Q Consensus 153 ~g~~~a~~~~~f~s~~pg 170 (210)
.|...-.|+++.-.+|..
T Consensus 248 ~GT~~YtFIWaMaGeN~~ 265 (278)
T COG3717 248 VGTANYTFIWAMAGENQD 265 (278)
T ss_pred ccccceEEEEEecccccc
Confidence 466677888877655543
No 135
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=52.33 E-value=1.5e+02 Score=25.45 Aligned_cols=86 Identities=19% Similarity=0.103 Sum_probs=54.8
Q ss_pred CceEEEeeccccCcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecC----CCeEEEEEEcCCCEEE
Q 028365 66 NAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSS----ANTVYVKTLKKGDIMI 141 (210)
Q Consensus 66 gg~~~~~~~~~~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~----~~~~~~~~l~~GDv~~ 141 (210)
-|.+..++.+ -+++.- +.+...+|.+|.....-.-.+ .-++++++|++.+..-... +.|.-..+=++=|+++
T Consensus 13 ~g~v~~vtp~-sagw~Y--VGF~~~~L~~Ges~~~~~~~~-E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vY 88 (270)
T COG3718 13 VGLVQDVTPE-SAGWEY--VGFRLLRLAAGESATEETGDR-ERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVY 88 (270)
T ss_pred CcceEEecCC-CCCcee--EEEEEEEccCCCcccccCCCc-eEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEE
Confidence 3456666553 344444 455667889999877766644 5566789999998863210 1222222555779999
Q ss_pred ECCCCeeEEEeCCC
Q 028365 142 FPQGLLHFQVNSGA 155 (210)
Q Consensus 142 ~P~g~~H~~~N~g~ 155 (210)
+|.|..-.+...++
T Consensus 89 vp~g~~~~vtA~t~ 102 (270)
T COG3718 89 VPAGSAFSVTATTD 102 (270)
T ss_pred ecCCceEEEEeecc
Confidence 99999877766443
No 136
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=50.77 E-value=43 Score=27.46 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=35.5
Q ss_pred EEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEE
Q 028365 89 RLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMI 141 (210)
Q Consensus 89 ~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~ 141 (210)
...+++|..+ .+-......+.+|++|.+.+..... +++.....+.+||++-
T Consensus 32 ~~~~~~ge~l-~~~g~~~~~~~~v~~G~v~~~~~~~-~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 32 LQRFPPGTML-ITEGEPADFLFVVLDGLVELSASSQ-DRETTLAILRPVSTFI 82 (236)
T ss_pred eeecCCCCEE-EeCCCccceEEEEEeCEEEEEEcCC-CceEEEEEeCCCchhh
Confidence 4556666643 2445456789999999999986543 5555556888999754
No 137
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=48.53 E-value=1.1e+02 Score=23.82 Aligned_cols=54 Identities=24% Similarity=0.219 Sum_probs=32.6
Q ss_pred ccceecCCCCEEEEEEeCEEEEEEE-ecC-------------------CCeEEEEEEcCCCEEEECCCCeeEEE
Q 028365 98 IPIHTHPAASEILLVVHGCITAGFI-SSS-------------------ANTVYVKTLKKGDIMIFPQGLLHFQV 151 (210)
Q Consensus 98 ~~pH~Hp~a~Ei~yVl~G~~~v~vv-~~~-------------------~~~~~~~~l~~GDv~~~P~g~~H~~~ 151 (210)
..+=.|.+-..+.|+++|+=++++. +.. +.......|++|+..+|-++-+|.-.
T Consensus 61 ~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 61 RRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp S-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred cceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 5566788889999999999888872 210 11111347999999999999999743
No 138
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=46.06 E-value=49 Score=21.65 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=23.1
Q ss_pred EEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCC
Q 028365 118 TAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 154 (210)
Q Consensus 118 ~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g 154 (210)
++++.|+ .++.++..|++|..+.--+|.++.-.-.|
T Consensus 11 rVQlTD~-Kgr~~Ti~L~~G~~fhThrG~i~HDdlIG 46 (54)
T PF14801_consen 11 RVQLTDP-KGRKHTITLEPGGEFHTHRGAIRHDDLIG 46 (54)
T ss_dssp EEEEEET-T--EEEEE--TT-EEEETTEEEEHHHHTT
T ss_pred EEEEccC-CCCeeeEEECCCCeEEcCccccchhheec
Confidence 4677787 78889999999999998888776433334
No 139
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=44.90 E-value=24 Score=23.37 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=17.9
Q ss_pred CCHHHHHHhcCCCHHHHHHHhhhh
Q 028365 183 LSSQLVEQTTFLDDATVKRLKAIL 206 (210)
Q Consensus 183 ~p~~vla~~f~~~~~~v~~l~~~~ 206 (210)
-.+.-+.+.+|++++++++|++++
T Consensus 44 s~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 44 SVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp SHHHHHHHT-T--HHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHc
Confidence 357789999999999999999864
No 140
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=42.71 E-value=75 Score=26.83 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.0
Q ss_pred EEEEcCCCEEEECCCCeeEEEeCCC
Q 028365 131 VKTLKKGDIMIFPQGLLHFQVNSGA 155 (210)
Q Consensus 131 ~~~l~~GDv~~~P~g~~H~~~N~g~ 155 (210)
...+++|+++++|...+|....+..
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pVt~ 166 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPVTR 166 (226)
T ss_pred EEecCCCeEEEECCCCceeeeeccC
Confidence 4488999999999999998876543
No 141
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=42.56 E-value=1.4e+02 Score=23.03 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=19.4
Q ss_pred ccceecCCCCEEEEEEeCEEEEEEE
Q 028365 98 IPIHTHPAASEILLVVHGCITAGFI 122 (210)
Q Consensus 98 ~~pH~Hp~a~Ei~yVl~G~~~v~vv 122 (210)
..+=.|.+-.-+.|+++|+=++++.
T Consensus 61 ~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 61 KKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred cchhhhhheEEEEEeecceEEEEEe
Confidence 4445566678999999999888874
No 142
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=39.96 E-value=54 Score=32.58 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=34.7
Q ss_pred EEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEE
Q 028365 91 DLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIM 140 (210)
Q Consensus 91 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~ 140 (210)
.+.||..+-..=.+- +|+.+|++|.+++.-.+. ++......|++||.+
T Consensus 446 ~f~pge~iireGd~v-~~myFI~rG~le~~~~~~-g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDPV-TDMYFIVRGSLESITTDG-GGFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCcc-ceeEEEEeeeEEEEEccC-CceEEEEEecCCCcc
Confidence 456666665555654 899999999997765432 345567799999987
No 143
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=39.09 E-value=46 Score=27.03 Aligned_cols=34 Identities=18% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECC
Q 028365 105 AASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQ 144 (210)
Q Consensus 105 ~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~ 144 (210)
...-++|+++|++.+.. +++.+ .|.+||.+++..
T Consensus 134 ~~~~l~~~~~G~~~i~~----~~~~~--~L~~~d~l~~~~ 167 (184)
T PF05962_consen 134 ASTVLVYVLEGAWSITE----GGNCI--SLSAGDLLLIDD 167 (184)
T ss_dssp -SEEEEEESSS-EEECC----CEEEE--EE-TT-EEEEES
T ss_pred CCEEEEEEeeCcEEEec----CCCce--EcCCCCEEEEeC
Confidence 44677899999866553 33544 999999987776
No 144
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=38.90 E-value=31 Score=26.22 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=20.6
Q ss_pred cCCHHHHHHhcCCCHHHHHHHhhhhC
Q 028365 182 NLSSQLVEQTTFLDDATVKRLKAILG 207 (210)
Q Consensus 182 ~~p~~vla~~f~~~~~~v~~l~~~~~ 207 (210)
++++..+|+.+++++++|+++++..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 59999999999999999999998743
No 145
>PLN02288 mannose-6-phosphate isomerase
Probab=37.64 E-value=26 Score=32.12 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=17.7
Q ss_pred EEEEcCCCEEEECCCCeeEE
Q 028365 131 VKTLKKGDIMIFPQGLLHFQ 150 (210)
Q Consensus 131 ~~~l~~GDv~~~P~g~~H~~ 150 (210)
...|+|||.+++|+|.+|.-
T Consensus 252 ~v~L~PGeaifl~ag~~HAY 271 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAY 271 (394)
T ss_pred eEecCCCCEEEecCCCCcee
Confidence 34899999999999999954
No 146
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=36.36 E-value=88 Score=31.23 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=33.5
Q ss_pred EEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEE
Q 028365 87 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIM 140 (210)
Q Consensus 87 ~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~ 140 (210)
+....+.||..+-.-=. ...++.+|++|++++...+. +.+.....+++||++
T Consensus 397 ~~~~~~~pge~I~~qge-~~~~lY~I~~G~V~i~~~~~-~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNE-APDDVYIVVSGEVEIIDSEG-EKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCC-CCceEEEEEecEEEEEEecC-CcceeeEEccCCCEe
Confidence 33456777775433222 35789999999998864221 334445689999976
No 147
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=36.34 E-value=2.3e+02 Score=22.90 Aligned_cols=66 Identities=11% Similarity=0.079 Sum_probs=45.0
Q ss_pred ccceecCCCCEEEEEEeC-EEEEEEEecCC----CeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEEEE
Q 028365 98 IPIHTHPAASEILLVVHG-CITAGFISSSA----NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVS 163 (210)
Q Consensus 98 ~~pH~Hp~a~Ei~yVl~G-~~~v~vv~~~~----~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~~~ 163 (210)
..+-.||..++-+.-+.| .-.+-++.+.+ +........+|+.+..-+|+.|...-.=+.+..++++
T Consensus 71 ~~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vv 141 (171)
T PRK13395 71 TMMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVV 141 (171)
T ss_pred eeEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEE
Confidence 445567778899998999 65566664421 2344559999999999999999765433344445544
No 148
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=34.80 E-value=59 Score=19.83 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=21.7
Q ss_pred HhHHhhcCCHHHHHHhcCCCHHHHHHHhh
Q 028365 176 FALFANNLSSQLVEQTTFLDDATVKRLKA 204 (210)
Q Consensus 176 ~~~f~s~~p~~vla~~f~~~~~~v~~l~~ 204 (210)
..++.++++..-+|+.||++..+|-+..+
T Consensus 15 ~~l~~~G~si~~IA~~~gvsr~TvyR~l~ 43 (45)
T PF02796_consen 15 KELYAEGMSIAEIAKQFGVSRSTVYRYLN 43 (45)
T ss_dssp HHHHHTT--HHHHHHHTTS-HHHHHHHHC
T ss_pred HHHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 35677789999999999999999988764
No 149
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=33.98 E-value=16 Score=36.59 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=33.9
Q ss_pred CCccccceecCCCCEEEEEEeCE-----EEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeC
Q 028365 94 KGGVIPIHTHPAASEILLVVHGC-----ITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNS 153 (210)
Q Consensus 94 pgg~~~pH~Hp~a~Ei~yVl~G~-----~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~ 153 (210)
-|.-+++-.||-.++=.|+-.+- -+++| .+ ++..=..||.++||+|.+|.++|.
T Consensus 764 ~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGV----e~--WtfvQ~LGdAVfIPAGaPHQVrNL 822 (889)
T KOG1356|consen 764 QGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGV----EP--WTFVQFLGDAVFIPAGAPHQVRNL 822 (889)
T ss_pred hcCCCCcccCCCcccceeccHHHHHHHHHHhCC----Cc--cchhhcccceEEecCCCcHHhhhh
Confidence 33445555566655555554442 12333 22 244667899999999999999985
No 150
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=33.93 E-value=53 Score=20.00 Aligned_cols=27 Identities=15% Similarity=0.035 Sum_probs=19.1
Q ss_pred hcCCHHHHHHhcCCCHHHHHHHhhhhC
Q 028365 181 NNLSSQLVEQTTFLDDATVKRLKAILG 207 (210)
Q Consensus 181 s~~p~~vla~~f~~~~~~v~~l~~~~~ 207 (210)
.+.+..-+|+.+|++..+|.+..+++.
T Consensus 16 ~G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 16 EGWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp HT--HHHHHHHHTS-HHHHHHHHT---
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 367888999999999999999998864
No 151
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=32.72 E-value=1.6e+02 Score=19.93 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=32.8
Q ss_pred EEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEEEE
Q 028365 112 VVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGF 161 (210)
Q Consensus 112 Vl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~~~ 161 (210)
--.|..++.+.+.++...+...+++||..-++....- ....|+-.++-+
T Consensus 4 ~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~-~i~iGna~~v~v 52 (77)
T PF13464_consen 4 TATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPF-RIRIGNAGAVEV 52 (77)
T ss_pred EEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCE-EEEEeCCCcEEE
Confidence 3458888998866345778889999999888544443 334565555433
No 152
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=31.35 E-value=79 Score=30.91 Aligned_cols=58 Identities=24% Similarity=0.377 Sum_probs=38.3
Q ss_pred eEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEe
Q 028365 85 LSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN 152 (210)
Q Consensus 85 is~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N 152 (210)
|.+....-.||.++ -|.-..-+.++||++|++++-- +++ ....|.+||++ |-..|..|
T Consensus 569 m~f~~~H~APGDLl-YHtGESvDaLcFvVsGSLEVIQ----DDE-VVAILGKGDVF----GD~FWK~~ 626 (971)
T KOG0501|consen 569 MEFQTNHCAPGDLL-YHTGESVDALCFVVSGSLEVIQ----DDE-VVAILGKGDVF----GDEFWKEN 626 (971)
T ss_pred HHHHhccCCCccee-eecCCccceEEEEEecceEEee----cCc-EEEEeecCccc----hhHHhhhh
Confidence 44444556676643 3555555789999999998754 444 45689999997 55545444
No 153
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=30.92 E-value=2.8e+02 Score=25.05 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=60.3
Q ss_pred cCCceEEEeeccccCcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCe-EEEEEEcCCCE--E
Q 028365 64 IINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANT-VYVKTLKKGDI--M 140 (210)
Q Consensus 64 ~~gg~~~~~~~~~~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~-~~~~~l~~GDv--~ 140 (210)
..|..+..++.+- - +.-....|+.++..-++..+-.-+...+..++|..=.+.++.+ +|+ .-...|++||- .
T Consensus 250 ~sG~eVlvVd~~G---~-tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~-dG~~vsVt~Lk~GD~VL~ 324 (344)
T PRK02290 250 RSGDEVLVVDADG---N-TREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTP-DGKPVSVVDLKPGDEVLG 324 (344)
T ss_pred cCCCEEEEEeCCC---C-EEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECC-CCCEeeeeecCCCCEEEE
Confidence 4577777776542 2 2235677888888887766666567899999999999999988 554 44569999998 4
Q ss_pred EECCCCeeEEEe
Q 028365 141 IFPQGLLHFQVN 152 (210)
Q Consensus 141 ~~P~g~~H~~~N 152 (210)
+++.+--|+-..
T Consensus 325 ~~~~~~RHfG~~ 336 (344)
T PRK02290 325 YLEEAARHFGMA 336 (344)
T ss_pred EecCCcccccce
Confidence 556666676544
No 154
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=30.33 E-value=3.2e+02 Score=23.61 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=41.2
Q ss_pred ccccceecCCCCEEEEEEeC-EEEEEEEecCCCeEEEEEEcCCCEEEECCCC--eeEEEeCCCCCEEEEE
Q 028365 96 GVIPIHTHPAASEILLVVHG-CITAGFISSSANTVYVKTLKKGDIMIFPQGL--LHFQVNSGADGALGFV 162 (210)
Q Consensus 96 g~~~pH~Hp~a~Ei~yVl~G-~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~--~H~~~N~g~~~a~~~~ 162 (210)
....-|.--+.-|+..|-=| .+.+.+ +++.| +|.+.|+.++-.|. +-+....+..|+.|+.
T Consensus 65 ~~~~~~~FLeRRElgiINIG~~G~i~v----~g~~y--~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~ 128 (278)
T COG3717 65 TQLGVSYFLERRELGIINIGGPGTITV----DGQEY--ELGHRDALYVGMGAKDVTFSSIDGAAPAKFYY 128 (278)
T ss_pred ccccccccceeeeeeEEeeCCCceEEE----CCEEE--EeccccEEEEecCccceEEeccCCCCcceEEE
Confidence 33443443344688887655 577777 88877 99999999999883 3344444556777763
No 155
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=30.25 E-value=45 Score=29.94 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=52.5
Q ss_pred ccCcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCC-CeE-------------------------
Q 028365 76 QFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA-NTV------------------------- 129 (210)
Q Consensus 76 ~~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~-~~~------------------------- 129 (210)
.+|...+.++.+....-+.|...|.|.-+. ..++.-+.|+.++.+.-+.. +..
T Consensus 241 ~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp~ 319 (355)
T KOG2132|consen 241 SFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFPK 319 (355)
T ss_pred ecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhhH
Confidence 455555544555555555588888888776 78888888988887764421 000
Q ss_pred ------EEEEEcCCCEEEECCCCeeEEEeC
Q 028365 130 ------YVKTLKKGDIMIFPQGLLHFQVNS 153 (210)
Q Consensus 130 ------~~~~l~~GDv~~~P~g~~H~~~N~ 153 (210)
....|++||++++|+-..|++...
T Consensus 320 ~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~ 349 (355)
T KOG2132|consen 320 FAKARFLDCLLEPGEALFIPPKWWHYVRSL 349 (355)
T ss_pred HHHHHHHHHhcCCchhccccHHHhhhhhhc
Confidence 133588999999999999988653
No 156
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=30.18 E-value=64 Score=27.67 Aligned_cols=37 Identities=27% Similarity=0.153 Sum_probs=27.5
Q ss_pred EEEcCCCEEEECCCCeeEEE-eCCCC-CEEEEEEecCCC
Q 028365 132 KTLKKGDIMIFPQGLLHFQV-NSGAD-GALGFVSFNSPN 168 (210)
Q Consensus 132 ~~l~~GDv~~~P~g~~H~~~-N~g~~-~a~~~~~f~s~~ 168 (210)
..+++||++++..-++|.-. |.++. ...++..|++.+
T Consensus 213 ~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~~ 251 (277)
T TIGR02408 213 FTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSVE 251 (277)
T ss_pred eccCCceEEEEccccccCCCCCCCCCcceeEEEEEecCC
Confidence 47899999999999999764 65554 455566777533
No 157
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=28.30 E-value=59 Score=19.39 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=15.7
Q ss_pred CCHHHHHHhcCCCHHHHHHHhh
Q 028365 183 LSSQLVEQTTFLDDATVKRLKA 204 (210)
Q Consensus 183 ~p~~vla~~f~~~~~~v~~l~~ 204 (210)
++++-..+.|+++.++..+|++
T Consensus 2 Lsd~dF~~vFgm~~~eF~~lP~ 23 (36)
T PF02209_consen 2 LSDEDFEKVFGMSREEFYKLPK 23 (36)
T ss_dssp S-HHHHHHHHSS-HHHHHHS-H
T ss_pred cCHHHHHHHHCCCHHHHHHChH
Confidence 4567778899999999998764
No 158
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=27.83 E-value=84 Score=24.32 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=19.9
Q ss_pred EEEEEcCCCEEEECCCCeeEEE-eCCCC
Q 028365 130 YVKTLKKGDIMIFPQGLLHFQV-NSGAD 156 (210)
Q Consensus 130 ~~~~l~~GDv~~~P~g~~H~~~-N~g~~ 156 (210)
....+++||++++...++|.-. |.++.
T Consensus 180 ~~~~~~~Gdvl~~~~~~~H~s~~N~s~~ 207 (211)
T PF05721_consen 180 VPVPMKAGDVLFFHSRLIHGSGPNTSDD 207 (211)
T ss_dssp EEE-BSTTEEEEEETTSEEEEE-B-SSS
T ss_pred EEeecCCCeEEEEcCCccccCCCCCCcC
Confidence 4558999999999999999764 44443
No 159
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=27.61 E-value=64 Score=25.19 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=21.6
Q ss_pred cCCHHHHHHhcCCCHHHHHHHhhh
Q 028365 182 NLSSQLVEQTTFLDDATVKRLKAI 205 (210)
Q Consensus 182 ~~p~~vla~~f~~~~~~v~~l~~~ 205 (210)
.++++-+|++|++++|.+++|++.
T Consensus 89 ~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 89 QYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCChHHHHHHcCCCHHHHHHHhcC
Confidence 578899999999999999999874
No 160
>smart00153 VHP Villin headpiece domain.
Probab=27.03 E-value=70 Score=19.01 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=17.8
Q ss_pred CCHHHHHHhcCCCHHHHHHHhh
Q 028365 183 LSSQLVEQTTFLDDATVKRLKA 204 (210)
Q Consensus 183 ~p~~vla~~f~~~~~~v~~l~~ 204 (210)
++++-..+.||++.++..+|++
T Consensus 2 LsdeeF~~vfgmsr~eF~~LP~ 23 (36)
T smart00153 2 LSDEDFEEVFGMTREEFYKLPL 23 (36)
T ss_pred CCHHHHHHHHCCCHHHHHhCcH
Confidence 4567778889999999998764
No 161
>PF13994 PgaD: PgaD-like protein
Probab=25.38 E-value=79 Score=24.31 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.8
Q ss_pred CCHHHHHHhcCCCHHHHHHHhhh
Q 028365 183 LSSQLVEQTTFLDDATVKRLKAI 205 (210)
Q Consensus 183 ~p~~vla~~f~~~~~~v~~l~~~ 205 (210)
++++-+|+.|+++++.++++++.
T Consensus 101 ~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 101 VSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCHHHHHHHcCCCHHHHHHHHhC
Confidence 67888999999999999999875
No 162
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=25.26 E-value=75 Score=19.14 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=15.3
Q ss_pred cCCHHHHHHhcC-CCHHHHHHH
Q 028365 182 NLSSQLVEQTTF-LDDATVKRL 202 (210)
Q Consensus 182 ~~p~~vla~~f~-~~~~~v~~l 202 (210)
.+|+|++.+-|. ++.+++.++
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~ 24 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRL 24 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHH
Confidence 489999999998 788777664
No 163
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=24.09 E-value=4.4e+02 Score=23.93 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=60.1
Q ss_pred cCCceEEEeeccccCcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCe-EEEEEEcCCCE--E
Q 028365 64 IINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANT-VYVKTLKKGDI--M 140 (210)
Q Consensus 64 ~~gg~~~~~~~~~~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~-~~~~~l~~GDv--~ 140 (210)
..|..+..++.+ +- +.-+...|+.++..-++..+-..+..++..++|..=.+.++.+ +|+ .-...|++||- .
T Consensus 260 ~sG~~VlvVd~~---G~-tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p-~G~~vsVt~Lk~GD~vL~ 334 (354)
T PF01959_consen 260 RSGDEVLVVDAD---GR-TRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGP-DGEPVSVTELKPGDEVLV 334 (354)
T ss_pred cCCCEEEEEeCC---CC-EEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECC-CCCEeeeeecCCCCEEEE
Confidence 456677777654 22 2235777888888887665555577899999999999999988 554 44569999998 4
Q ss_pred EECCCCeeEEEeC
Q 028365 141 IFPQGLLHFQVNS 153 (210)
Q Consensus 141 ~~P~g~~H~~~N~ 153 (210)
++..+--|+-...
T Consensus 335 ~~~~~~RHfG~~I 347 (354)
T PF01959_consen 335 YLEEAGRHFGMKI 347 (354)
T ss_pred EecCCCcccceEe
Confidence 5666666765443
No 164
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=23.99 E-value=1e+02 Score=17.81 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=18.3
Q ss_pred CCHHHHHHhcCCCHHHHHHHhhhhC
Q 028365 183 LSSQLVEQTTFLDDATVKRLKAILG 207 (210)
Q Consensus 183 ~p~~vla~~f~~~~~~v~~l~~~~~ 207 (210)
+..+=+|..+|++.|++.++.+++.
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~ 27 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLE 27 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4566788899999999999887764
No 165
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=23.79 E-value=1.4e+02 Score=24.27 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=31.9
Q ss_pred EEEEEeCEEEEEEEecCCCeEEEEEEcCCCEEEECCCCeeEEEe
Q 028365 109 ILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN 152 (210)
Q Consensus 109 i~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~~~P~g~~H~~~N 152 (210)
+..-++|++.+.+.. .+..+..+|.+||-+++.++.+-.+..
T Consensus 132 ~~~~l~G~G~v~l~~--~G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 132 FMLKLSGRGTVFLSG--YGAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp EEEEEESSCEEEEEE--CCSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred EEEEEEEEEEEEEEe--CCcEEEEEccCCceEEEcCCCEEEECC
Confidence 345688998888765 577888899999999999998766543
No 166
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=23.51 E-value=2.7e+02 Score=19.99 Aligned_cols=33 Identities=15% Similarity=0.016 Sum_probs=21.2
Q ss_pred CCeEEEEEEcCCCEEEECCCCeeEEEeCCCCCEE
Q 028365 126 ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGAL 159 (210)
Q Consensus 126 ~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~a~ 159 (210)
+|+.....+++||.+++++...--+.. +.++..
T Consensus 51 ~G~~~~~~vk~GD~Vlf~~~~g~ev~~-~~~~y~ 83 (95)
T PRK00364 51 NGERVPLDVKVGDKVLFGKYAGTEVKI-DGEEYL 83 (95)
T ss_pred CCCEeecccCCCCEEEEcCCCCeEEEE-CCEEEE
Confidence 455556689999999999765444433 344433
No 167
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=22.46 E-value=1e+02 Score=19.39 Aligned_cols=26 Identities=23% Similarity=0.080 Sum_probs=21.8
Q ss_pred hhcCCHHHHHHhcCCCHHHHHHHhhh
Q 028365 180 ANNLSSQLVEQTTFLDDATVKRLKAI 205 (210)
Q Consensus 180 ~s~~p~~vla~~f~~~~~~v~~l~~~ 205 (210)
..+.+.+.+|..||+++.++.++...
T Consensus 17 R~~~~~~~La~~FgIs~stvsri~~~ 42 (53)
T PF13613_consen 17 RLNLTFQDLAYRFGISQSTVSRIFHE 42 (53)
T ss_pred HcCCcHhHHhhheeecHHHHHHHHHH
Confidence 34688999999999999999987654
No 168
>COG1741 Pirin-related protein [General function prediction only]
Probab=21.25 E-value=5.5e+02 Score=22.33 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=29.4
Q ss_pred cCcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEE
Q 028365 77 FPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAG 120 (210)
Q Consensus 77 ~P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~ 120 (210)
.|.-... +.+..+.+++|+..+.+ =..-.-++||++|++.+.
T Consensus 166 ~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 166 SPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred cccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 3444444 77888889999987776 112257899999987664
No 169
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=20.66 E-value=1.1e+02 Score=24.30 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.4
Q ss_pred cCCHHHHHHhcCCCHHHHHHHhhh
Q 028365 182 NLSSQLVEQTTFLDDATVKRLKAI 205 (210)
Q Consensus 182 ~~p~~vla~~f~~~~~~v~~l~~~ 205 (210)
.++++-+|+.|+++++.++++++.
T Consensus 98 ~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 98 DLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCChHHHHHHcCCCHHHHHHHHhC
Confidence 477899999999999999999874
No 170
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.66 E-value=2.1e+02 Score=27.28 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=30.6
Q ss_pred EEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeEEEEEEcCCCEE
Q 028365 90 LDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIM 140 (210)
Q Consensus 90 v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~~~~~l~~GDv~ 140 (210)
..+.||-.+---= .-+.|+.+|.+|.+.+ ++. +|.+.-.++++|+++
T Consensus 333 qvfSPgDyICrKG-dvgkEMyIVk~G~L~V--v~d-Dg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 333 QVFSPGDYICRKG-DVGKEMYIVKEGKLAV--VAD-DGVTVFVTLKAGSVF 379 (536)
T ss_pred eeeCCCCeEEecC-cccceEEEEEccEEEE--Eec-CCcEEEEEecCCcee
Confidence 3445665432222 2468999999999865 444 565556789999875
No 171
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=20.11 E-value=54 Score=33.48 Aligned_cols=61 Identities=20% Similarity=0.351 Sum_probs=43.5
Q ss_pred CcccCcceEEEEEEEeCCccccceecCCCCEEEEEEeCEEEEEEEecCCCeE-EEEEEcCCCEE
Q 028365 78 PAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTV-YVKTLKKGDIM 140 (210)
Q Consensus 78 P~l~~~gis~~~v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~~~~~-~~~~l~~GDv~ 140 (210)
|-+..++.++..+.++||..+---=- .+.++.+|+.|+++.-.-.+ +++. +..++..||++
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD-~Sd~iyvVl~GRlRsv~~~~-~~k~~i~~EygrGd~i 560 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGD-SSDSIYVVLNGRLRSVIRQS-GGKKEIVGEYGRGDLI 560 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCC-ccCcEEEEecCeehhhhhcc-CccchhhhhccCccee
Confidence 34455677888889999887654434 57899999999998765333 3443 55678889987
Done!