Query 028367
Match_columns 210
No_of_seqs 108 out of 1075
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 10:24:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03751 proteasome_alpha_type_ 100.0 4.4E-52 9.6E-57 345.2 21.7 186 7-196 2-187 (212)
2 cd03755 proteasome_alpha_type_ 100.0 2.1E-51 4.6E-56 339.7 21.6 184 9-195 1-184 (207)
3 cd03754 proteasome_alpha_type_ 100.0 3.1E-51 6.6E-56 340.7 22.3 179 8-188 1-179 (215)
4 cd03750 proteasome_alpha_type_ 100.0 3.6E-51 7.8E-56 342.8 21.5 184 9-196 1-184 (227)
5 cd03752 proteasome_alpha_type_ 100.0 4.9E-51 1.1E-55 338.9 22.1 186 8-196 2-188 (213)
6 PRK03996 proteasome subunit al 100.0 1.8E-50 3.8E-55 341.3 22.0 190 1-195 3-192 (241)
7 PTZ00246 proteasome subunit al 100.0 2.1E-50 4.6E-55 343.1 21.7 188 1-195 1-189 (253)
8 cd03756 proteasome_alpha_arche 100.0 7.1E-50 1.5E-54 331.4 21.6 184 8-195 1-184 (211)
9 cd03749 proteasome_alpha_type_ 100.0 7.5E-50 1.6E-54 331.5 21.6 181 9-195 1-183 (211)
10 TIGR03633 arc_protsome_A prote 100.0 1.6E-49 3.6E-54 331.9 21.6 185 7-195 1-185 (224)
11 KOG0184 20S proteasome, regula 100.0 6.4E-50 1.4E-54 324.2 17.3 175 1-178 1-175 (254)
12 cd01911 proteasome_alpha prote 100.0 3.2E-49 6.9E-54 326.9 20.7 185 9-196 1-185 (209)
13 cd03753 proteasome_alpha_type_ 100.0 1.5E-48 3.2E-53 323.9 22.9 185 9-195 1-199 (213)
14 KOG0176 20S proteasome, regula 100.0 3.7E-49 8.1E-54 315.0 15.0 187 7-197 6-197 (241)
15 COG0638 PRE1 20S proteasome, a 100.0 6.2E-47 1.3E-51 319.0 23.4 188 8-198 2-199 (236)
16 KOG0183 20S proteasome, regula 100.0 2.1E-48 4.5E-53 314.0 12.5 173 8-182 3-175 (249)
17 KOG0178 20S proteasome, regula 100.0 3.8E-47 8.3E-52 306.1 16.3 174 1-179 1-175 (249)
18 KOG0181 20S proteasome, regula 100.0 1.7E-46 3.7E-51 299.1 13.2 186 7-196 4-189 (233)
19 KOG0182 20S proteasome, regula 100.0 1.2E-44 2.6E-49 291.8 17.9 178 1-178 1-178 (246)
20 KOG0863 20S proteasome, regula 100.0 2.5E-41 5.5E-46 275.5 16.7 169 7-179 4-172 (264)
21 cd03758 proteasome_beta_type_2 100.0 5.9E-37 1.3E-41 250.9 18.5 156 37-196 2-158 (193)
22 cd03760 proteasome_beta_type_4 100.0 1.3E-36 2.8E-41 249.5 18.1 157 35-196 2-162 (197)
23 cd03761 proteasome_beta_type_5 100.0 1.8E-35 3.9E-40 241.2 21.1 151 37-194 1-152 (188)
24 cd03759 proteasome_beta_type_3 100.0 5.6E-36 1.2E-40 245.4 17.9 155 34-195 2-158 (195)
25 TIGR03634 arc_protsome_B prote 100.0 9.7E-35 2.1E-39 235.8 21.0 152 35-194 1-153 (185)
26 cd03757 proteasome_beta_type_1 100.0 3.9E-35 8.4E-40 243.5 18.7 143 32-179 5-148 (212)
27 PF00227 Proteasome: Proteasom 100.0 5.7E-35 1.2E-39 236.9 19.2 162 32-196 1-165 (190)
28 TIGR03690 20S_bact_beta protea 100.0 3.3E-35 7.2E-40 245.0 18.2 158 34-195 1-161 (219)
29 TIGR03691 20S_bact_alpha prote 100.0 3.4E-35 7.3E-40 246.4 18.2 160 25-195 17-179 (228)
30 cd03764 proteasome_beta_archea 100.0 7.9E-35 1.7E-39 237.0 18.2 153 37-196 1-154 (188)
31 cd01906 proteasome_protease_Hs 100.0 7.5E-34 1.6E-38 228.9 19.2 155 37-195 1-156 (182)
32 cd03762 proteasome_beta_type_6 100.0 1.3E-33 2.7E-38 229.9 20.6 148 37-191 1-149 (188)
33 cd03763 proteasome_beta_type_7 100.0 6E-34 1.3E-38 232.2 17.9 152 37-196 1-153 (189)
34 cd01912 proteasome_beta protea 100.0 7.4E-34 1.6E-38 230.9 17.6 153 37-195 1-154 (189)
35 PTZ00488 Proteasome subunit be 100.0 2E-33 4.4E-38 238.2 20.8 160 31-196 35-204 (247)
36 cd03765 proteasome_beta_bacter 100.0 9.8E-33 2.1E-37 232.3 21.3 160 37-197 1-184 (236)
37 KOG0179 20S proteasome, regula 100.0 6.8E-28 1.5E-32 194.4 12.7 152 31-188 25-177 (235)
38 KOG0174 20S proteasome, regula 100.0 2.4E-27 5.1E-32 189.4 14.1 161 32-198 16-186 (224)
39 KOG0180 20S proteasome, regula 99.9 1.3E-27 2.8E-32 187.7 12.0 155 34-195 7-163 (204)
40 KOG0177 20S proteasome, regula 99.9 7E-27 1.5E-31 185.9 14.8 160 38-199 3-172 (200)
41 cd01901 Ntn_hydrolase The Ntn 99.9 1.4E-25 3.1E-30 174.9 19.4 145 37-187 1-147 (164)
42 KOG0175 20S proteasome, regula 99.9 2.4E-26 5.2E-31 190.3 14.8 139 34-178 70-209 (285)
43 KOG0185 20S proteasome, regula 99.9 1.4E-26 2.9E-31 189.7 11.5 164 13-179 13-184 (256)
44 cd01913 protease_HslV Protease 99.9 6.4E-25 1.4E-29 176.1 16.2 135 37-188 1-140 (171)
45 PRK05456 ATP-dependent proteas 99.9 4.3E-24 9.3E-29 172.0 17.7 147 37-197 2-159 (172)
46 KOG0173 20S proteasome, regula 99.9 5.6E-25 1.2E-29 181.8 11.5 155 34-196 35-190 (271)
47 TIGR03692 ATP_dep_HslV ATP-dep 99.9 4.3E-24 9.4E-29 171.3 15.4 132 37-185 1-137 (171)
48 PF10584 Proteasome_A_N: Prote 99.4 3.5E-14 7.6E-19 76.2 1.8 23 9-31 1-23 (23)
49 COG5405 HslV ATP-dependent pro 99.0 3.9E-09 8.5E-14 82.9 10.1 144 37-194 5-159 (178)
50 COG3484 Predicted proteasome-t 97.8 0.00042 9.1E-09 56.8 10.9 140 37-178 2-157 (255)
51 PF09894 DUF2121: Uncharacteri 77.6 4.3 9.2E-05 33.3 4.4 21 37-57 2-22 (194)
52 smart00481 POLIIIAc DNA polyme 57.0 13 0.00027 24.4 2.7 32 14-46 6-38 (67)
53 COG4079 Uncharacterized protei 48.5 67 0.0014 27.6 6.2 54 37-120 2-55 (293)
54 PF04539 Sigma70_r3: Sigma-70 43.7 51 0.0011 22.1 4.2 29 91-119 3-31 (78)
55 PF08140 Cuticle_1: Crustacean 40.4 58 0.0012 19.8 3.4 30 14-51 4-33 (40)
56 KOG0330 ATP-dependent RNA heli 31.9 53 0.0011 30.3 3.4 120 74-197 100-227 (476)
57 KOG1939 Oxoprolinase [Amino ac 31.6 21 0.00046 35.7 0.8 22 2-23 754-775 (1247)
58 COG4831 Roadblock/LC7 domain [ 31.2 22 0.00048 26.0 0.7 10 14-23 18-27 (109)
59 COG4728 Uncharacterized protei 28.1 60 0.0013 24.1 2.5 31 68-98 9-39 (124)
60 PF02811 PHP: PHP domain; Int 25.6 56 0.0012 24.8 2.2 31 14-45 7-38 (175)
61 COG0279 GmhA Phosphoheptose is 24.7 90 0.0019 25.2 3.2 37 14-51 114-151 (176)
62 PF01242 PTPS: 6-pyruvoyl tetr 24.0 2.1E+02 0.0045 21.1 5.0 46 81-126 43-98 (123)
63 PF06057 VirJ: Bacterial virul 23.7 1.3E+02 0.0028 24.7 4.0 35 107-145 43-77 (192)
64 PF07676 PD40: WD40-like Beta 22.1 43 0.00094 19.1 0.7 14 10-23 10-23 (39)
65 COG1387 HIS2 Histidinol phosph 21.8 92 0.002 26.1 2.9 28 14-43 9-36 (237)
66 PF08289 Flu_M1_C: Influenza M 21.5 3.1E+02 0.0067 19.5 5.5 47 81-127 39-85 (95)
67 PRK07328 histidinol-phosphatas 20.6 99 0.0021 26.2 2.9 36 9-45 4-40 (269)
No 1
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.4e-52 Score=345.17 Aligned_cols=186 Identities=35% Similarity=0.549 Sum_probs=176.3
Q ss_pred CCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHH
Q 028367 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 7 ~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
.+||+++|+||||||++|+|||+||+++|+ |+|||+++||||||+|++.+++++..++.+||++|++++++++||+.+|
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~-tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSG-TAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCC-CEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHh
Confidence 589999999999999999999999999998 9999999999999999999888887778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceE
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVG 166 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~ 166 (210)
++.+.+++|.+++.|++++|++++++.+++++++.+|.|+++.+.|||+|++||+|||++ ||+||++||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~-gp~Ly~~D~~Gs~~~~~~~ 159 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSD-GPQLYMIEPSGVSYGYFGC 159 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCC-cCEEEEECCCCCEEeeEEE
Confidence 999999999999999999999999999999999999999999999999999999999976 8999999999999999999
Q ss_pred EEccCCchhhhhhHHHHHHHHHHHHHHHHH
Q 028367 167 GFFNKNSIYDTFCFLSAIWIYNAIIVYILH 196 (210)
Q Consensus 167 a~G~gs~~a~~~~~~~~~~~~~~~~~~~~~ 196 (210)
|+|+|+.+|+++ ++-.|..+..+..|+.
T Consensus 160 a~G~g~~~a~~~--Lek~~~~dms~eeai~ 187 (212)
T cd03751 160 AIGKGKQAAKTE--LEKLKFSELTCREAVK 187 (212)
T ss_pred EECCCCHHHHHH--HHHhccCCCCHHHHHH
Confidence 999999999998 5667777777776654
No 2
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-51 Score=339.68 Aligned_cols=184 Identities=34% Similarity=0.555 Sum_probs=171.8
Q ss_pred CCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHHH
Q 028367 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (210)
Q Consensus 9 yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (210)
||+++|+||||||++|+|||++|+++|+ |+|||+++||||||+|++..++++.+++.+||++|+++++|++||+.+|++
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~-t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGT-TAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADAR 79 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCC-CEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHH
Confidence 8999999999999999999999999998 999999999999999999888888878899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEE
Q 028367 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGF 168 (210)
Q Consensus 89 ~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~ 168 (210)
.+.+++|.+++.|++++|++|+++.++++++.++|+|+++++.|||+++++|+|||++++|+||.+||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 80 VLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999766899999999999999999999
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 169 FNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 169 G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
|+|++++++++ +..|..+.....++
T Consensus 160 G~gs~~~~~~L--e~~~~~~ms~eeai 184 (207)
T cd03755 160 GRNSKTVREFL--EKNYKEEMTRDDTI 184 (207)
T ss_pred CCCCHHHHHHH--HhhccCCCCHHHHH
Confidence 99999999994 55555544444443
No 3
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.1e-51 Score=340.75 Aligned_cols=179 Identities=66% Similarity=1.008 Sum_probs=169.3
Q ss_pred CCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHH
Q 028367 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (210)
Q Consensus 8 ~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (210)
+||+++|+||||||++|+|||+||++++|+|+|||+++||||||+|+|.+++++.+++.+||++|+++++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 59999999999999999999999998755599999999999999999999888776788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEE
Q 028367 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGG 167 (210)
Q Consensus 88 ~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a 167 (210)
+.+.+++|.+++.|+++++++|+++.+++++++++|.|+++.+.|||++++||+|||+++||+||++||+|++.+++++|
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a 160 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATA 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999976699999999999999999999
Q ss_pred EccCCchhhhhhHHHHHHHHH
Q 028367 168 FFNKNSIYDTFCFLSAIWIYN 188 (210)
Q Consensus 168 ~G~gs~~a~~~~~~~~~~~~~ 188 (210)
+|+|+++++++ ++..|..+
T Consensus 161 ~G~gs~~~~~~--Le~~~~~~ 179 (215)
T cd03754 161 AGVKEQEATNF--LEKKLKKK 179 (215)
T ss_pred ECCCcHHHHHH--HHHHhccc
Confidence 99999999998 56667664
No 4
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-51 Score=342.77 Aligned_cols=184 Identities=36% Similarity=0.591 Sum_probs=173.2
Q ss_pred CCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHHH
Q 028367 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (210)
Q Consensus 9 yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (210)
||+++|+||||||++|||||.||+++|+ |+|||+++||||||+|++.+++++.+++.+||++|+++++|++||+.+|++
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~-t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGA-PSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFR 79 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCC-CEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHH
Confidence 8999999999999999999999999998 999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEE
Q 028367 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGF 168 (210)
Q Consensus 89 ~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~ 168 (210)
.+.+.+|.+++.|++++|++++++.+++++++++|+|+++++.|||++++||+|||++ ||+||++||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~~d~~G~~~~~~~~a~ 158 (227)
T cd03750 80 VLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQVDPSGSYFTWKATAI 158 (227)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEEECCCCCEEeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999976 899999999999999999999
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHH
Q 028367 169 FNKNSIYDTFCFLSAIWIYNAIIVYILH 196 (210)
Q Consensus 169 G~gs~~a~~~~~~~~~~~~~~~~~~~~~ 196 (210)
|+|+++++++ ++..|..+..+..++.
T Consensus 159 G~g~~~~~~~--Le~~~~~~ms~eeai~ 184 (227)
T cd03750 159 GKNYSNAKTF--LEKRYNEDLELEDAIH 184 (227)
T ss_pred CCCCHHHHHH--HHhhccCCCCHHHHHH
Confidence 9999999998 4566665555555444
No 5
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-51 Score=338.87 Aligned_cols=186 Identities=34% Similarity=0.562 Sum_probs=172.5
Q ss_pred CCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceee-cCCcceeeeEcCcEEEEEecChHH
Q 028367 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 8 ~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~-~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
+||+++|+||||||++|+|||.||+++|+ |+|||+++||||||+|++.+.+++. +++.+||++|+++++|++||+.+|
T Consensus 2 ~yd~~~~~fsp~Grl~Qveya~~a~~~G~-t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 2 RYDSRTTIFSPEGRLYQVEYAMEAISHAG-TCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CcCCCCceECCCCEEhHHHhHHHHHhcCC-CEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 79999999999999999999999999998 9999999999999999999976666 458999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceE
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVG 166 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~ 166 (210)
++.+.+++|.+++.|++++|++|+++.+++.++.++|.||++.+.|||+|++||+|||++.||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~ 160 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKAT 160 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999997668999999999999999999
Q ss_pred EEccCCchhhhhhHHHHHHHHHHHHHHHHH
Q 028367 167 GFFNKNSIYDTFCFLSAIWIYNAIIVYILH 196 (210)
Q Consensus 167 a~G~gs~~a~~~~~~~~~~~~~~~~~~~~~ 196 (210)
|+|++++.+++++ +..|..+..+..++.
T Consensus 161 a~G~gs~~~~~~L--e~~y~~~ms~eea~~ 188 (213)
T cd03752 161 AIGNNNQAAQSLL--KQDYKDDMTLEEALA 188 (213)
T ss_pred EECCCcHHHHHHH--HHhccCCCCHHHHHH
Confidence 9999999999984 556665555544443
No 6
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.8e-50 Score=341.28 Aligned_cols=190 Identities=38% Similarity=0.629 Sum_probs=176.6
Q ss_pred CCCCCCCCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEE
Q 028367 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (210)
Q Consensus 1 m~~~~~~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~ 80 (210)
|| |++++||+++|+||||||++|+|||.|++++|+ |+|||+++||||||+|++.+++++..++.+||++|++++++++
T Consensus 3 ~~-~~~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~-t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~ 80 (241)
T PRK03996 3 MQ-PQQMGYDRAITIFSPDGRLYQVEYAREAVKRGT-TAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAAS 80 (241)
T ss_pred CC-ccccccCCCCceECCCCeEhHHHHHHHHHHhCC-CEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEE
Confidence 66 599999999999999999999999999999998 9999999999999999999988888888999999999999999
Q ss_pred ecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCce
Q 028367 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 160 (210)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~ 160 (210)
||+.+|++.+.+++|.+++.|++++|++++++.++++++..+|.|+++.+.|||++++||+|||++ ||+||.+||+|++
T Consensus 81 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~-gp~Ly~id~~G~~ 159 (241)
T PRK03996 81 AGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAY 159 (241)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCC-cCEEEEECCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999986 8999999999999
Q ss_pred eeeceEEEccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 161 FGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 161 ~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
.+++++|+|.|++.++++. +..|..+..+..++
T Consensus 160 ~~~~~~a~G~g~~~~~~~L--e~~~~~~~s~eeai 192 (241)
T PRK03996 160 LEYKATAIGAGRDTVMEFL--EKNYKEDLSLEEAI 192 (241)
T ss_pred ecceEEEECCCcHHHHHHH--HHhcccCCCHHHHH
Confidence 9999999999999999984 44554444444433
No 7
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.1e-50 Score=343.14 Aligned_cols=188 Identities=35% Similarity=0.558 Sum_probs=173.7
Q ss_pred CCCCCCCCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceee-cCCcceeeeEcCcEEEE
Q 028367 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLL 79 (210)
Q Consensus 1 m~~~~~~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~-~~~~~KI~~I~~~i~~~ 79 (210)
|++ +||+++|+|||||||+|||||+||+++|+ |+|||+++||||||+|++.+.+++. .++.+||++|+++++++
T Consensus 1 ~~~----~yd~~~~~fsp~Grl~QvEYA~~av~~g~-t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~ 75 (253)
T PTZ00246 1 MSR----RYDSRTTTFSPEGRLYQVEYALEAINNAS-LTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCA 75 (253)
T ss_pred CCC----ccCCCCceECCCCEEhHHHHHHHHHHhCC-CEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEE
Confidence 777 89999999999999999999999999998 9999999999999999999966665 44689999999999999
Q ss_pred EecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCc
Q 028367 80 ATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGH 159 (210)
Q Consensus 80 ~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs 159 (210)
++|+.+|++.+.+.+|.+++.|++.++++++++.+++.++..+|.|+|+.+.|||+|++||+|||++.||+||.+||+|+
T Consensus 76 ~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs 155 (253)
T PTZ00246 76 VAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGN 155 (253)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999755899999999999
Q ss_pred eeeeceEEEccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 160 FFGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 160 ~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
+.+++++|+|+|++++++++ +..|..+..+..++
T Consensus 156 ~~~~~~~a~G~gs~~~~~~L--e~~~~~~ms~eeai 189 (253)
T PTZ00246 156 YSGWKATAIGQNNQTAQSIL--KQEWKEDLTLEQGL 189 (253)
T ss_pred EecceEEEECCCcHHHHHHH--HHhccCCCCHHHHH
Confidence 99999999999999999994 55666554444443
No 8
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.1e-50 Score=331.37 Aligned_cols=184 Identities=38% Similarity=0.647 Sum_probs=171.7
Q ss_pred CCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHH
Q 028367 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (210)
Q Consensus 8 ~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (210)
+||.++|+||||||++|+|||.|++++|+ |+|||+++||||||+|++.+++++.+++.+||++|+++++|++||+.+|+
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~-t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 79 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGT-TALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADA 79 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCC-CEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHH
Confidence 59999999999999999999999999998 99999999999999999999888878899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEE
Q 028367 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGG 167 (210)
Q Consensus 88 ~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a 167 (210)
+.+.+.+|.+++.|+++++++++++.++++++..+|.|+++++.|||++++||+|||++ +|+||.+||+|++.+++++|
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~-~~~ly~vd~~G~~~~~~~~a 158 (211)
T cd03756 80 RVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAYNEYKATA 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCC-CCEEEEECCCCCeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999986 89999999999999999999
Q ss_pred EccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 168 FFNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 168 ~G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
+|+|++.+++++ +..|..+..+..++
T Consensus 159 ~G~g~~~~~~~L--e~~~~~~m~~~ea~ 184 (211)
T cd03756 159 IGSGRQAVTEFL--EKEYKEDMSLEEAI 184 (211)
T ss_pred ECCCCHHHHHHH--HhhccCCCCHHHHH
Confidence 999999999995 44555444444433
No 9
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.5e-50 Score=331.47 Aligned_cols=181 Identities=33% Similarity=0.579 Sum_probs=167.8
Q ss_pred CCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHHH
Q 028367 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (210)
Q Consensus 9 yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (210)
||+++|+||||||++|+|||++++++|+ |+|||+++||||||+|+|.+.++. ++.+||++|+++++|++||+.+|++
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~-t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~ 77 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGS-ATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADAR 77 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCC-CEEEEEeCCEEEEEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHH
Confidence 8999999999999999999999999998 999999999999999999877654 4569999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEE
Q 028367 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGF 168 (210)
Q Consensus 89 ~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~ 168 (210)
.+.+++|.+++.|+++++++|+++.++++++.++|+||++.+.|||+|++||+|||++ ||+||++||+|++.+++++|+
T Consensus 78 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~-gp~Ly~~Dp~G~~~~~~~~a~ 156 (211)
T cd03749 78 VLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDES-GPHLFQTCPSGNYFEYKATSI 156 (211)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCC-CCeEEEECCCcCEeeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999976 899999999999999999999
Q ss_pred ccCCchhhhhhHHHHHHHH--HHHHHHHH
Q 028367 169 FNKNSIYDTFCFLSAIWIY--NAIIVYIL 195 (210)
Q Consensus 169 G~gs~~a~~~~~~~~~~~~--~~~~~~~~ 195 (210)
|+|++.|+++ ++..|.. +.....++
T Consensus 157 G~g~~~a~~~--Le~~~~~~~~ms~ee~i 183 (211)
T cd03749 157 GARSQSARTY--LERHFEEFEDCSLEELI 183 (211)
T ss_pred CCCcHHHHHH--HHHhhccccCCCHHHHH
Confidence 9999999998 6777663 44444443
No 10
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.6e-49 Score=331.93 Aligned_cols=185 Identities=38% Similarity=0.643 Sum_probs=172.4
Q ss_pred CCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHH
Q 028367 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 7 ~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
++||.++|+|||||||+|+|||+|++++|+ |+|||+++||||||+|+|.+++++..++.+||++|+++++|++||+.+|
T Consensus 1 ~~~~~~~~~f~p~Grl~Qieya~~av~~G~-tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 79 (224)
T TIGR03633 1 MGYDRAITVFSPDGRLYQVEYAREAVKRGT-TAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVAD 79 (224)
T ss_pred CCCCCCCceECCCCeEeHHHHHHHHHHcCC-CEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHh
Confidence 479999999999999999999999999998 9999999999999999999988887889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceE
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVG 166 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~ 166 (210)
++.+.+.+|.++..|++++|++++++.++++++.++|.|+++.+.|||+|++||+|+|++ +|+||.+||.|++.+++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~-~~~Ly~~D~~G~~~~~~~~ 158 (224)
T TIGR03633 80 ARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGALLEYKAT 158 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCC-cCEEEEECCCCCeecceEE
Confidence 999999999999999999999999999999999999999999999999999999999975 8999999999999999999
Q ss_pred EEccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 167 GFFNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 167 a~G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
|+|+|+.++++++ +..|..+..+..++
T Consensus 159 a~G~g~~~~~~~L--~~~~~~~~~~eeai 185 (224)
T TIGR03633 159 AIGAGRQAVTEFL--EKEYREDLSLDEAI 185 (224)
T ss_pred EECCCCHHHHHHH--HHhccCCCCHHHHH
Confidence 9999999999984 44555554444443
No 11
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-50 Score=324.21 Aligned_cols=175 Identities=38% Similarity=0.623 Sum_probs=172.1
Q ss_pred CCCCCCCCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEE
Q 028367 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (210)
Q Consensus 1 m~~~~~~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~ 80 (210)
||| |+.+||++-++||||||+||+|||+|||++++ |+||||+|||||+++||..+++|..++..+||+.|++||+|++
T Consensus 1 MSs-IGtGyDls~s~fSpdGrvfQveYA~KAven~~-T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~av 78 (254)
T KOG0184|consen 1 MSS-IGTGYDLSASTFSPDGRVFQVEYAQKAVENSG-TCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAV 78 (254)
T ss_pred CCc-ccccccccceeeCCCCceehHHHHHHHHhcCC-cEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEE
Confidence 896 99999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCce
Q 028367 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 160 (210)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~ 160 (210)
+|+.+|.+.+.+++|.|+.+|+.+|+.++|.+.++..++++.|.||.++..||||++.++++||++ ||+||++||+|..
T Consensus 79 aGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~-g~~LymiepSG~~ 157 (254)
T KOG0184|consen 79 AGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDE-GPQLYMIEPSGSS 157 (254)
T ss_pred eccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCC-CceEEEEcCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999976 9999999999999
Q ss_pred eeeceEEEccCCchhhhh
Q 028367 161 FGHKVGGFFNKNSIYDTF 178 (210)
Q Consensus 161 ~~~~~~a~G~gs~~a~~~ 178 (210)
+.++++|+|.|.+.|++.
T Consensus 158 ~~Y~~aaiGKgrq~aKtE 175 (254)
T KOG0184|consen 158 YGYKGAAIGKGRQAAKTE 175 (254)
T ss_pred cceeeeeccchhHHHHHH
Confidence 999999999999999998
No 12
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=3.2e-49 Score=326.92 Aligned_cols=185 Identities=46% Similarity=0.759 Sum_probs=173.3
Q ss_pred CCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHHH
Q 028367 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (210)
Q Consensus 9 yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (210)
||.++|+||||||++|+|||+|++++|+ |+||++++||||||+|++.+++++..++.+||++|++++++++||+.+|++
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~-tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 79 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGS-TAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADAR 79 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCC-CEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHH
Confidence 8999999999999999999999999998 999999999999999999997777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEE
Q 028367 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGF 168 (210)
Q Consensus 89 ~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~ 168 (210)
.+.+.++.++..|++++|++++++.++++++.++|+|+++.+.|||+|+++|+|||+++||+||.+||.|++.+++++|+
T Consensus 80 ~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 80 VLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999877899999999999999999999
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHH
Q 028367 169 FNKNSIYDTFCFLSAIWIYNAIIVYILH 196 (210)
Q Consensus 169 G~gs~~a~~~~~~~~~~~~~~~~~~~~~ 196 (210)
|+|++++.++ ++..|.++.....++.
T Consensus 160 G~g~~~~~~~--L~~~~~~~ms~~ea~~ 185 (209)
T cd01911 160 GKGSQEAKTF--LEKRYKKDLTLEEAIK 185 (209)
T ss_pred CCCcHHHHHH--HHHhcccCCCHHHHHH
Confidence 9999999998 4666766655554443
No 13
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-48 Score=323.86 Aligned_cols=185 Identities=34% Similarity=0.592 Sum_probs=169.0
Q ss_pred CCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHHH
Q 028367 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (210)
Q Consensus 9 yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (210)
||+++|+||||||++|+|||++++++|+ |+||++++||||||+|++.+++++..++.+||++|+++++|++||+.+|++
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~-t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADAR 79 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCC-CEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 8999999999999999999999999998 999999999999999999987777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhh-----cCcccceEEEEEEEEeCCCCcEEEEECCCCceeee
Q 028367 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQH-----AYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 163 (210)
Q Consensus 89 ~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~-----~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~ 163 (210)
.+.+.+|.+++.|++++|++|+++.++++++..+|+|++. .+.|||+|++||+|||++ ||+||.+||+|++.++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~-gp~Ly~vd~~G~~~~~ 158 (213)
T cd03753 80 TLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDEN-GPQLFHTDPSGTFTRC 158 (213)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCC-CCEEEEECCCCCeecc
Confidence 9999999999999999999999999999999999999864 357999999999999976 8999999999999999
Q ss_pred ceEEEccCCchhhhhh---------HHHHHHHHHHHHHHHH
Q 028367 164 KVGGFFNKNSIYDTFC---------FLSAIWIYNAIIVYIL 195 (210)
Q Consensus 164 ~~~a~G~gs~~a~~~~---------~~~~~~~~~~~~~~~~ 195 (210)
+++|+|++++.+++++ +++|+.+..+++..+.
T Consensus 159 ~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~ 199 (213)
T cd03753 159 DAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVM 199 (213)
T ss_pred cEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999995 3444444444444443
No 14
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-49 Score=315.03 Aligned_cols=187 Identities=33% Similarity=0.560 Sum_probs=175.1
Q ss_pred CCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHH
Q 028367 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 7 ~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
+.||+.+++||||||+||||||++|++.|+ |.|||+.++|||||++||.+++|+.++..+||++|++||+|++||+.+|
T Consensus 6 seydrgVNTfSpEGRlfQVEYaieAikLGs-TaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~aD 84 (241)
T KOG0176|consen 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIAD 84 (241)
T ss_pred HHhcccccccCCCceeeehhhHHHHHhcCC-ceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccccc
Confidence 479999999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhh-----cCcccceEEEEEEEEeCCCCcEEEEECCCCcee
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQH-----AYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFF 161 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~-----~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~ 161 (210)
+++++++.|.++++|++.||++|+++.+.+.++++.-+|... .-.|||||++++||+|++ ||+||+.||+|++.
T Consensus 85 arTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~-gpqL~h~dPSGtf~ 163 (241)
T KOG0176|consen 85 ARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDET-GPQLYHLDPSGTFI 163 (241)
T ss_pred hHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCC-CceEEEeCCCCceE
Confidence 999999999999999999999999999999999999888533 124999999999999977 99999999999999
Q ss_pred eeceEEEccCCchhhhhhHHHHHHHHHHHHHHHHHh
Q 028367 162 GHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYILHW 197 (210)
Q Consensus 162 ~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~~~ 197 (210)
+|++-|+|+|++-|++. +.-.|...+.+..++..
T Consensus 164 ~~~AKAIGSgsEga~~~--L~~e~~~~ltL~ea~~~ 197 (241)
T KOG0176|consen 164 RYKAKAIGSGSEGAESS--LQEEYHKDLTLKEAEKI 197 (241)
T ss_pred EecceeccccchHHHHH--HHHHHhhcccHHHHHHH
Confidence 99999999999999998 67778777777777654
No 15
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-47 Score=318.97 Aligned_cols=188 Identities=39% Similarity=0.643 Sum_probs=173.3
Q ss_pred CCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcc-eeecCCcceeeeEcCcEEEEEecChHH
Q 028367 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDK-LLDHTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 8 ~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~-li~~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
+||+.+++||||||++|+|||.+++++||||+|||+++||||||+|||.+.+ ++.+++.+||++|+|||+|++||+.+|
T Consensus 2 ~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aD 81 (236)
T COG0638 2 GYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAAD 81 (236)
T ss_pred CCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHh
Confidence 6999999999999999999999999998779999999999999999999955 555677999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceE
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVG 166 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~ 166 (210)
++.+++++|.+++.|++.+|++|+++.+++++++++|.|+++ .|||+|+++|+|+|+ ++|+||++||+|++.++++.
T Consensus 82 a~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~ 158 (236)
T COG0638 82 AQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKAT 158 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC-CCCeEEEECCCCceeecCEE
Confidence 999999999999999999999999999999999999999876 899999999999998 59999999999999999999
Q ss_pred EEccCCchhhhhh---------HHHHHHHHHHHHHHHHHhh
Q 028367 167 GFFNKNSIYDTFC---------FLSAIWIYNAIIVYILHWI 198 (210)
Q Consensus 167 a~G~gs~~a~~~~---------~~~~~~~~~~~~~~~~~~~ 198 (210)
|+|+|++.|++++ +++|+.+.-..+..++.|-
T Consensus 159 a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd 199 (236)
T COG0638 159 AIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERD 199 (236)
T ss_pred EEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999996 5566666666666666543
No 16
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-48 Score=313.99 Aligned_cols=173 Identities=35% Similarity=0.565 Sum_probs=167.1
Q ss_pred CCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHH
Q 028367 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (210)
Q Consensus 8 ~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (210)
+||+.+|+|||||||||||||++|+.+|+ |+||++++|+|||+.+++...+|.+.+...||..+++|++|+++|+.+|+
T Consensus 3 rydraltvFSPDGhL~QVEYAqEAvrkGs-taVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDA 81 (249)
T KOG0183|consen 3 RYDRALTVFSPDGHLFQVEYAQEAVRKGS-TAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADA 81 (249)
T ss_pred ccccceEEECCCCCEEeeHhHHHHHhcCc-eEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccc
Confidence 49999999999999999999999999998 99999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEE
Q 028367 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGG 167 (210)
Q Consensus 88 ~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a 167 (210)
+.+++++|.+|++|+++.+.+++++.++++|+.+.|+|||+.+.||||++.+|+|+|+++.|.||++||+|.+.+|++.|
T Consensus 82 rilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~a 161 (249)
T KOG0183|consen 82 RILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANA 161 (249)
T ss_pred eeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred EccCCchhhhhhHHH
Q 028367 168 FFNKNSIYDTFCFLS 182 (210)
Q Consensus 168 ~G~gs~~a~~~~~~~ 182 (210)
+|.++.-+.-| +++
T Consensus 162 iGr~sk~VrEf-lEK 175 (249)
T KOG0183|consen 162 IGRSSKTVREF-LEK 175 (249)
T ss_pred cccccHHHHHH-HHH
Confidence 99999877766 444
No 17
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-47 Score=306.05 Aligned_cols=174 Identities=37% Similarity=0.624 Sum_probs=170.0
Q ss_pred CCCCCCCCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceee-cCCcceeeeEcCcEEEE
Q 028367 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLL 79 (210)
Q Consensus 1 m~~~~~~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~-~~~~~KI~~I~~~i~~~ 79 (210)
||| +||...|+||||||++|||||++++.+.| |+|||..+||||||++++.+++|++ +...+||++++|+|+|+
T Consensus 1 msr----~ydsrttiFspEGRLyQVEyAmeais~aG-t~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~ 75 (249)
T KOG0178|consen 1 MSR----RYDSRTTIFSPEGRLYQVEYAMEAISHAG-TCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACA 75 (249)
T ss_pred CCc----CcCCcccccCCCcchHHHHHHHHHHhhhc-ceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEE
Confidence 899 99999999999999999999999999999 9999999999999999999999987 67899999999999999
Q ss_pred EecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCc
Q 028367 80 ATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGH 159 (210)
Q Consensus 80 ~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs 159 (210)
++|+.+|+..|++++|..++.|..+||++||.+.|++.+++..|.|||+.+.|||||+++.+|||+..|.+||+.||+|+
T Consensus 76 vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGn 155 (249)
T KOG0178|consen 76 VAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGN 155 (249)
T ss_pred EecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred eeeeceEEEccCCchhhhhh
Q 028367 160 FFGHKVGGFFNKNSIYDTFC 179 (210)
Q Consensus 160 ~~~~~~~a~G~gs~~a~~~~ 179 (210)
+-.|++.|+|.+++.|+.+-
T Consensus 156 y~gWka~ciG~N~~Aa~s~L 175 (249)
T KOG0178|consen 156 YGGWKATCIGANSGAAQSML 175 (249)
T ss_pred ccccceeeeccchHHHHHHH
Confidence 99999999999999999884
No 18
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-46 Score=299.11 Aligned_cols=186 Identities=34% Similarity=0.516 Sum_probs=178.2
Q ss_pred CCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHH
Q 028367 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 7 ~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
.+|.+++|+|||+|||.|+|||+.|+.+|. +.|||+..||||||++|+..+.|.+.+..+|+++|.++|+|.+||+.+|
T Consensus 4 ~~y~fslTtFSpsGKL~QieyAL~Av~~G~-~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD 82 (233)
T KOG0181|consen 4 FGYSFSLTTFSPSGKLVQIEYALTAVVNGQ-TSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPD 82 (233)
T ss_pred cccceeeEEEcCCCceehHHHHHHHHhCCC-CceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCc
Confidence 389999999999999999999999999998 9999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceE
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVG 166 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~ 166 (210)
++.++++.|..++.|...|+++||+..|...++..||+|||+.+.||||++++++|||+. +|.||++||+|++..|+++
T Consensus 83 ~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~-~p~LyQvdPSGsyf~wkat 161 (233)
T KOG0181|consen 83 YRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPLLYQVDPSGSYFAWKAT 161 (233)
T ss_pred eeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCC-ceeEEEECCccceeehhhh
Confidence 999999999999999999999999999999999999999999999999999999999987 9999999999999999999
Q ss_pred EEccCCchhhhhhHHHHHHHHHHHHHHHHH
Q 028367 167 GFFNKNSIYDTFCFLSAIWIYNAIIVYILH 196 (210)
Q Consensus 167 a~G~gs~~a~~~~~~~~~~~~~~~~~~~~~ 196 (210)
|+|.+...+++| .+.+|-..+.++-++|
T Consensus 162 A~Gkn~v~aktF--lEkR~~edleldd~ih 189 (233)
T KOG0181|consen 162 AMGKNYVNAKTF--LEKRYNEDLELDDAIH 189 (233)
T ss_pred hhccCcchHHHH--HHHHhccccccchHHH
Confidence 999999999999 6777777777776665
No 19
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=291.76 Aligned_cols=178 Identities=66% Similarity=1.028 Sum_probs=174.8
Q ss_pred CCCCCCCCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEE
Q 028367 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (210)
Q Consensus 1 m~~~~~~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~ 80 (210)
|||++..+||+++|+|||||||+|||||.||++++|.|+||++++|++|+++.|+.+.+|++++....+|+|..+|+|++
T Consensus 1 ~s~gs~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~ 80 (246)
T KOG0182|consen 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVI 80 (246)
T ss_pred CCCCCcCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEE
Confidence 89988999999999999999999999999999997779999999999999999999999999999999999999999999
Q ss_pred ecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCce
Q 028367 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 160 (210)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~ 160 (210)
+|+.+|.+..++++|.++.+++++||.+||++.|++++++..|.|||+.-+||+||.+++.|+|++.||.+|.+||.|-+
T Consensus 81 tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy 160 (246)
T KOG0182|consen 81 TGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYY 160 (246)
T ss_pred ecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeceEEEccCCchhhhh
Q 028367 161 FGHKVGGFFNKNSIYDTF 178 (210)
Q Consensus 161 ~~~~~~a~G~gs~~a~~~ 178 (210)
..+++.|.|-...-+..+
T Consensus 161 ~g~kAtaaG~Kq~e~tsf 178 (246)
T KOG0182|consen 161 YGFKATAAGVKQQEATSF 178 (246)
T ss_pred ccceeeecccchhhHHHH
Confidence 999999999999999988
No 20
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-41 Score=275.48 Aligned_cols=169 Identities=35% Similarity=0.548 Sum_probs=163.5
Q ss_pred CCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHH
Q 028367 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 7 ~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
+.||++.|+|||+||++|||||.+|+++|+ ++||+|.++..||++-+|..+.|.. ...||++||+|++++++|+++|
T Consensus 4 nqyd~d~t~wsPqGrl~QvEya~EavkqGs-atVGLks~thaVLvAl~r~~seLss--~QkKi~~iD~h~g~siAGLt~D 80 (264)
T KOG0863|consen 4 NQYDNDVTTWSPQGRLHQVEYAMEAVKQGS-ATVGLKSRTHAVLVALKRAQSELSS--HQKKIFKIDDHIGISIAGLTAD 80 (264)
T ss_pred ccccCceeEECCcceehHHHHHHHHHhccc-ceEeecccceEEEeeeccchhHHHH--hhheeEecccccceEEeccCcc
Confidence 579999999999999999999999999999 9999999999999999998877765 5689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceE
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVG 166 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~ 166 (210)
++.|.+++|.+|..++..+++++++..|...+.+.+|..||+.+.|||||.++++|+|+. ||+||+++|+|++.++++.
T Consensus 81 arvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~-G~hl~e~~Psg~v~e~~g~ 159 (264)
T KOG0863|consen 81 ARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDES-GPHLYEFCPSGNVFECKGM 159 (264)
T ss_pred hHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCC-CceeEEEcCCccEEEEeee
Confidence 999999999999999999999999999999999999999999999999999999999987 9999999999999999999
Q ss_pred EEccCCchhhhhh
Q 028367 167 GFFNKNSIYDTFC 179 (210)
Q Consensus 167 a~G~gs~~a~~~~ 179 (210)
++|+.++.|+++-
T Consensus 160 sIGsRSQsARTyL 172 (264)
T KOG0863|consen 160 SIGSRSQSARTYL 172 (264)
T ss_pred ecccchhhHHHHH
Confidence 9999999999984
No 21
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.9e-37 Score=250.93 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=141.0
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
+|+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||+.+|++.+++.+|.+++.|+++++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 599999999999999999998 7778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
+++++++|.|+++ + |||++++||+|||++.||+||++||+|++.+++++|+|+|++++++++ +..|..+.....++
T Consensus 82 ~~l~~~~~~~~~~-~-rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~L--e~~~~~~ms~eeai 157 (193)
T cd03758 82 NFTRRELAESLRS-R-TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSIL--DRYYKPDMTVEEAL 157 (193)
T ss_pred HHHHHHHHHHhhc-C-CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHH--HhccCCCCCHHHHH
Confidence 9999999988654 3 899999999999975589999999999999999999999999999995 44455454444444
Q ss_pred H
Q 028367 196 H 196 (210)
Q Consensus 196 ~ 196 (210)
.
T Consensus 158 ~ 158 (193)
T cd03758 158 E 158 (193)
T ss_pred H
Confidence 3
No 22
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-36 Score=249.50 Aligned_cols=157 Identities=17% Similarity=0.132 Sum_probs=142.9
Q ss_pred cCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHH-HHHHHhCCCCCHH
Q 028367 35 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAA-EFRFKYGYEMPVD 112 (210)
Q Consensus 35 gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~~~~g~~i~~~ 112 (210)
|+ |+|||+++||||||+|+|.+ ++++.+++.+||++|+++++++++|+.+|++.+++++|.+++ .+++.++++|+++
T Consensus 2 G~-T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 2 GT-SVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred Cc-eEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 55 99999999999999999999 899988899999999999999999999999999999999987 5678899999999
Q ss_pred HHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHH--HHH
Q 028367 113 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIY--NAI 190 (210)
Q Consensus 113 ~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~--~~~ 190 (210)
.+++++++++ |++++++|||+|++||+|||+++||+||.+||+|++.+++++|+|+|+++++++ ++..|.. +..
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~--Le~~~~~~~~ms 156 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPL--LREAWEKKPDLT 156 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHH--HHhhcCCCCCCC
Confidence 9999999986 778888999999999999997558999999999999999999999999999998 4666766 555
Q ss_pred HHHHHH
Q 028367 191 IVYILH 196 (210)
Q Consensus 191 ~~~~~~ 196 (210)
...++.
T Consensus 157 ~eea~~ 162 (197)
T cd03760 157 EEEARA 162 (197)
T ss_pred HHHHHH
Confidence 555543
No 23
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-35 Score=241.17 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=136.9
Q ss_pred ceEEEEEcCCEEEEEEecCCCc-ceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVPD-KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~~-~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|++.+. .++.+++.+||++|++|++++++|+.+|++.+.+.+|.+++.|++++|++|+++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999994 677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHHHHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYI 194 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~ 194 (210)
+++++++|.++ .+||++++||+|||++ ||+||.+||+|++.+++++|+|+|++++++++ +..|..+.....+
T Consensus 81 ~~ls~~l~~~~----~~~~~v~~li~G~D~~-g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~L--e~~~~~~~s~eea 152 (188)
T cd03761 81 KLLSNMLYQYK----GMGLSMGTMICGWDKT-GPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVL--DSGYRYDLSVEEA 152 (188)
T ss_pred HHHHHHHHhcC----CCCeEEEEEEEEEeCC-CCEEEEEcCCceEEEcCeEEEcccHHHHHHHH--HhcCCCCCCHHHH
Confidence 99999999874 4699999999999975 89999999999999999999999999999996 3344444444333
No 24
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.6e-36 Score=245.42 Aligned_cols=155 Identities=18% Similarity=0.257 Sum_probs=137.4
Q ss_pred ccCceEEEEEcCCEEEEEEecCCCcceee-cCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 028367 34 AAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVD 112 (210)
Q Consensus 34 ~gg~tvIgik~~dgVVlaad~~~~~~li~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~ 112 (210)
+|+ |+|||+++||||||+|++.+.+++. +++.+||++|+++++|++||+.+|++.+.+.+|.+++.|++++|++|+++
T Consensus 2 ~G~-t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 80 (195)
T cd03759 2 NGG-AVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80 (195)
T ss_pred CCc-eEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 576 9999999999999999999877665 56789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeec-eEEEccCCchhhhhhHHHHHHHHHHHH
Q 028367 113 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-VGGFFNKNSIYDTFCFLSAIWIYNAII 191 (210)
Q Consensus 113 ~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~-~~a~G~gs~~a~~~~~~~~~~~~~~~~ 191 (210)
.+++++++++ |++ +.|||+|++||+|||++++|+||.+||+|++..++ ++|+|+|++.++++. +..|..+...
T Consensus 81 ~la~~l~~~l--y~~--r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~L--e~~~~~~~s~ 154 (195)
T cd03759 81 TFSSLISSLL--YEK--RFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMC--ESLWRPDMEP 154 (195)
T ss_pred HHHHHHHHHH--HHh--cCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHH--HhccCCCCCH
Confidence 9999999998 443 46899999999999977689999999999998887 999999999999984 4445555444
Q ss_pred HHHH
Q 028367 192 VYIL 195 (210)
Q Consensus 192 ~~~~ 195 (210)
..++
T Consensus 155 ~ea~ 158 (195)
T cd03759 155 DELF 158 (195)
T ss_pred HHHH
Confidence 4443
No 25
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=9.7e-35 Score=235.77 Aligned_cols=152 Identities=22% Similarity=0.369 Sum_probs=138.9
Q ss_pred cCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 028367 35 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 113 (210)
Q Consensus 35 gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~ 113 (210)
|+ |+|||+++||||||+|++.+ ++++.+++.+||++|++++++++||..+|++.+.+++|.+++.|+..++++++++.
T Consensus 1 G~-t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (185)
T TIGR03634 1 GT-TTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKA 79 (185)
T ss_pred CC-cEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 44 99999999999999999998 88888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHHHHHHHH
Q 028367 114 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVY 193 (210)
Q Consensus 114 la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~ 193 (210)
++++++.++|.+ ++|||++++||+|||++ ||+||.+||+|++.+++++|+|+|++++++++ +..|..+..+..
T Consensus 80 ~a~~l~~~~~~~----~~rP~~v~~ivaG~d~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~L--e~~~~~~~s~~e 152 (185)
T TIGR03634 80 LATLLSNILNSN----RFFPFIVQLLVGGVDEE-GPHLYSLDPAGGIIEDDYTATGSGSPVAYGVL--EDEYREDMSVEE 152 (185)
T ss_pred HHHHHHHHHHhc----CCCCeEEEEEEEEEeCC-CCEEEEECCCCCeEECCEEEEcCcHHHHHHHH--HhcCCCCCCHHH
Confidence 999999999865 78999999999999976 89999999999999999999999999999984 445544444333
Q ss_pred H
Q 028367 194 I 194 (210)
Q Consensus 194 ~ 194 (210)
+
T Consensus 153 a 153 (185)
T TIGR03634 153 A 153 (185)
T ss_pred H
Confidence 3
No 26
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.9e-35 Score=243.49 Aligned_cols=143 Identities=17% Similarity=0.287 Sum_probs=132.6
Q ss_pred HhccCceEEEEEcCCEEEEEEecCCCcce-eecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 028367 32 VKAAGVTSIGVRGKDSVCVVTQKKVPDKL-LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMP 110 (210)
Q Consensus 32 v~~gg~tvIgik~~dgVVlaad~~~~~~l-i~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~ 110 (210)
+++|+ |+|||+++||||||+|++.+.++ +..++.+||++|++++++++||+.+|++.+.+.+|.+++.|++++|++|+
T Consensus 5 ~~~G~-Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~ 83 (212)
T cd03757 5 TDNGG-TVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMS 83 (212)
T ss_pred cCCCc-cEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCC
Confidence 45777 99999999999999999999555 55788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh
Q 028367 111 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC 179 (210)
Q Consensus 111 ~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~ 179 (210)
++.++++++.+++. + +.|||++++||||||++++|+||.+||+|++.+++++|+|+|+++|++++
T Consensus 84 ~~~la~~ls~~ly~--~--R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L 148 (212)
T cd03757 84 TEAIAQLLSTILYS--R--RFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLL 148 (212)
T ss_pred HHHHHHHHHHHHHh--h--cCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHH
Confidence 99999999999953 2 46899999999999977679999999999999999999999999999984
No 27
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=5.7e-35 Score=236.95 Aligned_cols=162 Identities=28% Similarity=0.481 Sum_probs=146.8
Q ss_pred HhccCceEEEEEcCCEEEEEEecCCC-ccee-ecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028367 32 VKAAGVTSIGVRGKDSVCVVTQKKVP-DKLL-DHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 109 (210)
Q Consensus 32 v~~gg~tvIgik~~dgVVlaad~~~~-~~li-~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i 109 (210)
|++|+ |+|||+++||||||+|++.+ +..+ .++..+||++|++++++++||+.+|++.+.+.++.+++.|++.++.++
T Consensus 1 v~~G~-t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~ 79 (190)
T PF00227_consen 1 VNNGT-TVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPI 79 (190)
T ss_dssp HHTSB-EEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGT
T ss_pred CCCCe-EEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccc
Confidence 56887 99999999999999999998 5555 444479999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeee-ceEEEccCCchhhhhhHHHHHHHHH
Q 028367 110 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH-KVGGFFNKNSIYDTFCFLSAIWIYN 188 (210)
Q Consensus 110 ~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~-~~~a~G~gs~~a~~~~~~~~~~~~~ 188 (210)
+++.+++.++.+++.++++.++||++++++++|||++++|+||.+||+|++.++ .++|+|+|++++++++ +..|..+
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l--~~~~~~~ 157 (190)
T PF00227_consen 80 SPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPIL--EKLYKPD 157 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHH--HHHHTTT
T ss_pred cchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHH--HhhccCC
Confidence 999999999999999999999999999999999998866999999999999999 6999999999999984 6666666
Q ss_pred HHHHHHHH
Q 028367 189 AIIVYILH 196 (210)
Q Consensus 189 ~~~~~~~~ 196 (210)
..+..++.
T Consensus 158 ~~~~ea~~ 165 (190)
T PF00227_consen 158 LSLEEAIE 165 (190)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHH
Confidence 65555544
No 28
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=3.3e-35 Score=245.04 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=141.5
Q ss_pred ccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 028367 34 AAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVD 112 (210)
Q Consensus 34 ~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~ 112 (210)
+|+ |+|||+++||||||+|++.+ ++++.+++.+||++|+++++|+++|+.+|++.+.+++|.+++.|+++++++|+++
T Consensus 1 ~G~-T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~ 79 (219)
T TIGR03690 1 HGT-TIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLD 79 (219)
T ss_pred CCc-EEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 366 99999999999999999999 6888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCC-CCcEEEEECCCCc-eeeeceEEEccCCchhhhhhHHHHHHHHHHH
Q 028367 113 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE-CGPRLFKCDPAGH-FFGHKVGGFFNKNSIYDTFCFLSAIWIYNAI 190 (210)
Q Consensus 113 ~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~-~gp~Ly~vD~~Gs-~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~ 190 (210)
.+++++++++|.++ ...+|||++++||+|||++ ++|+||.+||+|+ +..++++|+|+|+++|++++ +..|..+..
T Consensus 80 ~la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~L--e~~~~~~ms 156 (219)
T TIGR03690 80 GKANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGAL--KKLYSPDLD 156 (219)
T ss_pred HHHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHH--HhcCCCCcC
Confidence 99999999999876 4458999999999999964 5899999999995 66779999999999999994 456655554
Q ss_pred HHHHH
Q 028367 191 IVYIL 195 (210)
Q Consensus 191 ~~~~~ 195 (210)
...++
T Consensus 157 ~eeai 161 (219)
T TIGR03690 157 EDDAL 161 (219)
T ss_pred HHHHH
Confidence 44444
No 29
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=3.4e-35 Score=246.39 Aligned_cols=160 Identities=15% Similarity=0.123 Sum_probs=141.6
Q ss_pred hhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHH
Q 028367 25 VEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFK 104 (210)
Q Consensus 25 veya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~ 104 (210)
-|||.||+++|+ |+|||+++||||||+|++. ++.+||++|+|+++|+++|+.+|++.++++++.+++.|+++
T Consensus 17 ~EYA~kav~~g~-T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~ 88 (228)
T TIGR03691 17 AELARKGIARGR-SVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYS 88 (228)
T ss_pred HHHHHHHHHcCC-cEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhh
Confidence 599999999987 9999999999999999973 46789999999999999999999999999999999999999
Q ss_pred hC-CCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeC-CCCcEEEEECCCCceeeec-eEEEccCCchhhhhhHH
Q 028367 105 YG-YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGHK-VGGFFNKNSIYDTFCFL 181 (210)
Q Consensus 105 ~g-~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~-~~gp~Ly~vD~~Gs~~~~~-~~a~G~gs~~a~~~~~~ 181 (210)
++ .+++++.+++++++.++.++ +.+.|||+|++||+|||+ +.||+||.+||+|++.+++ ++|+|+|++.++++ +
T Consensus 89 ~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~--L 165 (228)
T TIGR03691 89 YDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATA--L 165 (228)
T ss_pred cCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHH--H
Confidence 98 78999999988888777665 567899999999999985 4589999999999999976 79999999999998 4
Q ss_pred HHHHHHHHHHHHHH
Q 028367 182 SAIWIYNAIIVYIL 195 (210)
Q Consensus 182 ~~~~~~~~~~~~~~ 195 (210)
+..|..+..+..++
T Consensus 166 ek~y~~~ms~eeai 179 (228)
T TIGR03691 166 KESYRDGLSLADAL 179 (228)
T ss_pred HHhcCCCCCHHHHH
Confidence 55666555544444
No 30
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.9e-35 Score=237.00 Aligned_cols=153 Identities=21% Similarity=0.328 Sum_probs=140.0
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|+|.+ ++++.+++.+||++|+++++++++|+.+|++.+.+.+|.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999 6888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
+++++++|.+ ++|||+|++||+|||++ +|+||.+||+|++.+++++|+|+|++++++++ +..|..+..+..++
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~~-~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L--~~~~~~~~~~~ea~ 153 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDEE-GPHLYSLDPLGSIIEDKYTATGSGSPYAYGVL--EDEYKEDMTVEEAK 153 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeCC-CCEEEEECCCCCEEEcCEEEEcCcHHHHHHHH--HhcCCCCCCHHHHH
Confidence 9999999875 68999999999999984 89999999999999999999999999999984 55566655555444
Q ss_pred H
Q 028367 196 H 196 (210)
Q Consensus 196 ~ 196 (210)
.
T Consensus 154 ~ 154 (188)
T cd03764 154 K 154 (188)
T ss_pred H
Confidence 3
No 31
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=7.5e-34 Score=228.92 Aligned_cols=155 Identities=34% Similarity=0.579 Sum_probs=140.7
Q ss_pred ceEEEEEcCCEEEEEEecCCCcceee-cCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~~~li~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+||++++||||||+|++.+..+.. +++.+|||+|+++++++++|+.+|++.+.+.++.++..|++.+|++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 48999999999999999999855544 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
+++++++|+++++ .|||+++++|+|+|++.+|+||.+||+|++.+++++|+|+|+++++++ ++..|..+..+..++
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~--L~~~~~~~~s~~ea~ 156 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGI--LEKLYKPDMTLEEAI 156 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHH--HHHHccCCCCHHHHH
Confidence 9999999998765 899999999999998559999999999999999999999999999998 466666655444443
No 32
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-33 Score=229.89 Aligned_cols=148 Identities=14% Similarity=0.144 Sum_probs=134.7
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|++.+ +.++.+++.+||++|+++++++++|+.+|++.+.+.+|.+++.|+++++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 589999999999999999998 5788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIYNAII 191 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~ 191 (210)
++++.++|++ .|||++++||+|+|++.||+||.+||.|++.+++++++|+|+++++++. +..|..+...
T Consensus 81 ~~l~~~~~~~-----~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~L--e~~~~~~~s~ 149 (188)
T cd03762 81 SLFKNLCYNY-----KEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYV--DANYKPGMTL 149 (188)
T ss_pred HHHHHHHHhc-----cccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHH--HhcCCCCCCH
Confidence 9999999766 3799999999999975589999999999999999999999999999985 3344443333
No 33
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6e-34 Score=232.18 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=137.6
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|+|.+ +.++..++.+||++|+++++++++|+.+|++.+.+.+|.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 599999999999999999999 5677788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
+++++.+|.|. .||+|++||||||++ ||+||.+||.|++.+++++|+|+++++++++. +..|..+.....++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~~-g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L--~~~~~~~ls~~ea~ 152 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDYT-GPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVL--EDRYKPDMTEEEAK 152 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcCC-CCEEEEECCCCCEEecCEEEEcCCHHHHHHHH--HhhcCCCCCHHHHH
Confidence 99999998762 399999999999976 89999999999999999999999999999984 55566555555544
Q ss_pred H
Q 028367 196 H 196 (210)
Q Consensus 196 ~ 196 (210)
.
T Consensus 153 ~ 153 (189)
T cd03763 153 K 153 (189)
T ss_pred H
Confidence 3
No 34
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.4e-34 Score=230.90 Aligned_cols=153 Identities=19% Similarity=0.271 Sum_probs=137.6
Q ss_pred ceEEEEEcCCEEEEEEecCCCcceee-cCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~~~li~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+||++++||||||+|++.+.++.. +++.+|||+|++++++++||+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 48999999999999999999955544 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
++++++++++++ |||++++||+|+|++++|+||.+||+|++.+++++|+|.+++++++++ +..|..+..+..++
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~L--e~~~~~~~s~~ea~ 154 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGIL--DRGYKPDMTLEEAV 154 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHH--HhccCCCCCHHHHH
Confidence 999999987743 899999999999985589999999999999999999999999999984 55555554444443
No 35
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=2e-33 Score=238.21 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=139.6
Q ss_pred HHhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028367 31 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 109 (210)
Q Consensus 31 av~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i 109 (210)
.+.+|+ |+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||+.+|++.+.+++|.+++.|++++|++|
T Consensus 35 ~~~~G~-T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~i 113 (247)
T PTZ00488 35 EFAHGT-TTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELI 113 (247)
T ss_pred ccCCCc-eEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 456777 99999999999999999998 7888889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh---------H
Q 028367 110 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC---------F 180 (210)
Q Consensus 110 ~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~---------~ 180 (210)
+++.+++++++++|.+ |..|+.+++||+|||++ ||+||.+||+|++.+++++|+|+|+.++++++ .
T Consensus 114 sv~~la~~ls~~l~~~----R~~~~~v~~iiaG~D~~-gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~ 188 (247)
T PTZ00488 114 SVAAASKILANIVWNY----KGMGLSMGTMICGWDKK-GPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLND 188 (247)
T ss_pred CHHHHHHHHHHHHHhc----CCCCeeEEEEEEEEeCC-CCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCH
Confidence 9999999999999765 22344555899999976 89999999999999999999999999999996 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 028367 181 LSAIWIYNAIIVYILH 196 (210)
Q Consensus 181 ~~~~~~~~~~~~~~~~ 196 (210)
++|+...-+++..++.
T Consensus 189 eEai~l~~kal~~~~~ 204 (247)
T PTZ00488 189 EEAQDLGRRAIYHATF 204 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 36
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.8e-33 Score=232.29 Aligned_cols=160 Identities=10% Similarity=0.077 Sum_probs=137.9
Q ss_pred ceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEc----CcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCC-CCCH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPIT----KYLGLLATGMTADARTLVQQARYEAAEFRFKYGY-EMPV 111 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~-~i~~ 111 (210)
|=+|||+++||||||+|+|.+++++..++.+||++|+ +|++|+.||+.+|++.+++++|.+++.|++++|+ ++++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 3589999999999999999988877766889999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHH-hhhhcC-----cccceEEEEEEEEeCCCCcEEEEECCCCceeeec----eEEEccCCchhhhhh--
Q 028367 112 DVLAKWIADKSQV-YTQHAY-----MRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK----VGGFFNKNSIYDTFC-- 179 (210)
Q Consensus 112 ~~la~~ls~~~~~-~t~~~~-----~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~----~~a~G~gs~~a~~~~-- 179 (210)
+.+++++++++++ ++|..+ .|||+|++||+|||++.||+||++||+|++.+++ ++|+|. +.+++++.
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek 159 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR 159 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence 9999999998654 445443 5899999999999966689999999999999984 589996 68999885
Q ss_pred -------HHHHHHHHHHHHHHHHHh
Q 028367 180 -------FLSAIWIYNAIIVYILHW 197 (210)
Q Consensus 180 -------~~~~~~~~~~~~~~~~~~ 197 (210)
+++|..+.-+++..++.+
T Consensus 160 ~yk~~ms~eeai~la~~al~~a~~r 184 (236)
T cd03765 160 VITPDTSLEDAAKCALVSMDSTMRS 184 (236)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455555555555555543
No 37
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.8e-28 Score=194.43 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=139.4
Q ss_pred HHhccCceEEEEEcCCEEEEEEecCCCc-ceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028367 31 AVKAAGVTSIGVRGKDSVCVVTQKKVPD-KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 109 (210)
Q Consensus 31 av~~gg~tvIgik~~dgVVlaad~~~~~-~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i 109 (210)
...+|| |+|||++.|+.|+|+|+|.++ .-|.+++.+|||+++|++.++.||+.+|+..|...++.+.+.|+..++..|
T Consensus 25 Y~~NGG-T~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~m 103 (235)
T KOG0179|consen 25 YEDNGG-TTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKM 103 (235)
T ss_pred cccCCc-eEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 467899 999999999999999999984 446689999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHHH
Q 028367 110 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIYN 188 (210)
Q Consensus 110 ~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~~ 188 (210)
+++..|++|+..++ ..|+.||++..+|+|+|++++|.+|+.||.|++.+..+.|-|+++.+++|+ |+.-+-+.|
T Consensus 104 s~~s~A~lls~~LY----~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~Pf-LDnQi~~kn 177 (235)
T KOG0179|consen 104 SIHSAAQLLSTILY----SKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPF-LDNQIGHKN 177 (235)
T ss_pred cHHHHHHHHHHHHh----hcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhh-hhhhccCcC
Confidence 99999999999995 458999999999999999988999999999999999999999999999999 444443333
No 38
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.4e-27 Score=189.37 Aligned_cols=161 Identities=15% Similarity=0.184 Sum_probs=148.8
Q ss_pred HhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 028367 32 VKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMP 110 (210)
Q Consensus 32 v~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~ 110 (210)
+..|+ |++|++++|||||++|.|.+ +.++.++..+|+.+|+|+|+||-||..+|.|.+++.++..+..|..+++.+++
T Consensus 16 vstGT-TImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 16 VSTGT-TIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred cccCc-eEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 45665 99999999999999999999 88899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh---------HH
Q 028367 111 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC---------FL 181 (210)
Q Consensus 111 ~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~---------~~ 181 (210)
+...|+.++++.++|. .-+-..+||||||+..|.++|.+-.-|+..+.+++.-|+||.++++|| ++
T Consensus 95 v~~aA~l~r~~~Y~~r-----e~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~E 169 (224)
T KOG0174|consen 95 VHTAASLFREICYNYR-----EMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLE 169 (224)
T ss_pred HHHHHHHHHHHHHhCH-----HhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHH
Confidence 9999999999998762 237899999999998899999997777777778888899999999999 99
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028367 182 SAIWIYNAIIVYILHWI 198 (210)
Q Consensus 182 ~~~~~~~~~~~~~~~~~ 198 (210)
+|..+.-+.+.+|+.|-
T Consensus 170 E~~~fvk~Av~lAi~rD 186 (224)
T KOG0174|consen 170 ECVRFVKNAVSLAIERD 186 (224)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999984
No 39
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-27 Score=187.73 Aligned_cols=155 Identities=16% Similarity=0.225 Sum_probs=143.8
Q ss_pred ccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 028367 34 AAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVD 112 (210)
Q Consensus 34 ~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~ 112 (210)
+|| ++||++++++|.||+|.|.. ...-.+++.+|||+++|++++|.+|+..|+|++.++++...+.|+++.+++|.|+
T Consensus 7 nGg-~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 7 NGG-SVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred cCc-eEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 789 99999999999999999998 4444578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceee-eceEEEccCCchhhhhhHHHHHHHHHHHH
Q 028367 113 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG-HKVGGFFNKNSIYDTFCFLSAIWIYNAII 191 (210)
Q Consensus 113 ~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~-~~~~a~G~gs~~a~~~~~~~~~~~~~~~~ 191 (210)
++++++|..+++. |+-||.+..+|||+|+++.|++..+|..|.... .++++.|.+++...++| +++|-+|...
T Consensus 86 ~~s~mvS~~lYek----RfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmC--E~ly~pnmep 159 (204)
T KOG0180|consen 86 TFSSMVSSLLYEK----RFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMC--EALYEPNMEP 159 (204)
T ss_pred HHHHHHHHHHHHh----hcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHH--HHhcCCCCCH
Confidence 9999999999754 788999999999999998999999999999985 69999999999999999 8888888877
Q ss_pred HHHH
Q 028367 192 VYIL 195 (210)
Q Consensus 192 ~~~~ 195 (210)
+...
T Consensus 160 d~LF 163 (204)
T KOG0180|consen 160 DELF 163 (204)
T ss_pred HHHH
Confidence 6654
No 40
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7e-27 Score=185.93 Aligned_cols=160 Identities=14% Similarity=0.205 Sum_probs=142.7
Q ss_pred eEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 028367 38 TSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 116 (210)
Q Consensus 38 tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~ 116 (210)
+++||++.|+|++|+|+... +-++.+++.+|++++++++.|+++|..+|+..+.++++++++.|+.++|.+++|+.+++
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 78999999999999999987 55556889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh---------HHHHHHHH
Q 028367 117 WIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC---------FLSAIWIY 187 (210)
Q Consensus 117 ~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~---------~~~~~~~~ 187 (210)
++...++++.+ ..+||.|+++|||+|++.||.||++|..|+..+.++++.|.++-+..++= .++|..+.
T Consensus 83 FtR~~La~~LR--sr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lm 160 (200)
T KOG0177|consen 83 FTRRELAESLR--SRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLM 160 (200)
T ss_pred HHHHHHHHHHh--cCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHH
Confidence 99999998853 47899999999999999899999999999999999999999998877763 45566666
Q ss_pred HHHHHHHHHhhh
Q 028367 188 NAIIVYILHWIQ 199 (210)
Q Consensus 188 ~~~~~~~~~~~~ 199 (210)
++|+.++-.|.+
T Consensus 161 kKCv~El~kRlv 172 (200)
T KOG0177|consen 161 KKCVLELKKRLV 172 (200)
T ss_pred HHHHHHHHHhcc
Confidence 667666655543
No 41
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.94 E-value=1.4e-25 Score=174.86 Aligned_cols=145 Identities=29% Similarity=0.406 Sum_probs=134.2
Q ss_pred ceEEEEEcCCEEEEEEecCCCcceee-cCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~~~li~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
+|+||++++||||+|+|++.+..+.. ..+..||++++++++++++|..+|++.+.+.++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 48999999999999999999855544 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeee-ceEEEccCCchhhhhhHHHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH-KVGGFFNKNSIYDTFCFLSAIWIY 187 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~-~~~a~G~gs~~a~~~~~~~~~~~~ 187 (210)
+.+++.++.+++ .||++++++|+|+|+ ++|+||.+||.|++.++ .++++|+++..+.++ .+..|..
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~--l~~~~~~ 147 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSL--LEKLYKP 147 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHH--HHHHhcC
Confidence 999999998865 899999999999998 48999999999999999 999999999999998 4555544
No 42
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-26 Score=190.34 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=132.0
Q ss_pred ccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 028367 34 AAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVD 112 (210)
Q Consensus 34 ~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~ 112 (210)
+|+ |++|++++.|||+|+|.|.+ +++|.++..+||.+||++++-+.+|-.+|++.+-+.+..+|++|++++++.|++.
T Consensus 70 hGT-TTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVs 148 (285)
T KOG0175|consen 70 HGT-TTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVS 148 (285)
T ss_pred CCc-eEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehH
Confidence 675 99999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhh
Q 028367 113 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTF 178 (210)
Q Consensus 113 ~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~ 178 (210)
..++.+++++++|. ++ -+-+..+|+|||++ ||.||.||..|+-.+.+.+++|+|+.+|++.
T Consensus 149 aASKllsN~~y~Yk---Gm-GLsmGtMi~G~Dk~-GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGV 209 (285)
T KOG0175|consen 149 AASKLLSNMVYQYK---GM-GLSMGTMIAGWDKK-GPGLYYVDSEGTRLSGDLFSVGSGSTYAYGV 209 (285)
T ss_pred HHHHHHHHHHhhcc---Cc-chhheeeEeeccCC-CCceEEEcCCCCEecCceEeecCCCceeEEe
Confidence 99999999998772 32 47789999999988 9999999999999999999999999999997
No 43
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-26 Score=189.68 Aligned_cols=164 Identities=16% Similarity=0.180 Sum_probs=144.7
Q ss_pred cceeCCCCccc------hhhhHHHHHhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChH
Q 028367 13 ITIFSPEGRLF------QVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTA 85 (210)
Q Consensus 13 ~t~Fsp~Grl~------Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~ 85 (210)
.++|.|.|... .++..+.+.-.|+ +|||+|++||||||||+..+ +++...++.+||++|+||+.+|+||..+
T Consensus 13 ~~~f~~~~~~m~~a~~~~~qrt~~p~vTGT-SVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdis 91 (256)
T KOG0185|consen 13 PGTFYPSGSLMENAGDYPIQRTLNPIVTGT-SVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDIS 91 (256)
T ss_pred CCcCcCccchhhhccCCCcccccCceeccc-eEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHH
Confidence 56677775543 2222334445565 99999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeec
Q 028367 86 DARTLVQQARYEAAEFR-FKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK 164 (210)
Q Consensus 86 D~~~l~~~~r~~~~~~~-~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~ 164 (210)
|+|.+.+.+.....+.. +-.|..+.|+.++++|...| |.+++++.|++.+++|+|+|+++.|+|-.+|..|..++.+
T Consensus 92 D~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~ 169 (256)
T KOG0185|consen 92 DFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESP 169 (256)
T ss_pred HHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCc
Confidence 99999999998888753 55669999999999999999 5568999999999999999998789999999999999999
Q ss_pred eEEEccCCchhhhhh
Q 028367 165 VGGFFNKNSIYDTFC 179 (210)
Q Consensus 165 ~~a~G~gs~~a~~~~ 179 (210)
..|+|.|+.+|.|+-
T Consensus 170 ~vATGfg~hLa~P~l 184 (256)
T KOG0185|consen 170 VVATGFGAHLALPLL 184 (256)
T ss_pred hhhhhhHHHhhhHHH
Confidence 999999999999994
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.93 E-value=6.4e-25 Score=176.09 Aligned_cols=135 Identities=12% Similarity=0.020 Sum_probs=113.0
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcC-cEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITK-YLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~-~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~l 114 (210)
||+|||+++||||||+|+|.+ +.++.+++.+||++|++ +++|+++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 599999999999999999998 88888999999999999 999999999999999999999999999988774 34
Q ss_pred HHHHHHHHHHhhhhcCcccce-EEEEEEEEeCCCCcEEEEECCCCceeeec--eEEEccCCchhhhhhHHHHHHHHH
Q 028367 115 AKWIADKSQVYTQHAYMRPLG-VVAMVLSIDEECGPRLFKCDPAGHFFGHK--VGGFFNKNSIYDTFCFLSAIWIYN 188 (210)
Q Consensus 115 a~~ls~~~~~~t~~~~~rP~g-v~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~--~~a~G~gs~~a~~~~~~~~~~~~~ 188 (210)
++.+..++ .| +.+|+. +.++++++ ++||.+||.|++.+.+ +.++|+|+++|+++| ++.|..+
T Consensus 76 a~l~~~l~-~~----~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~l--d~~yk~~ 140 (171)
T cd01913 76 VELAKDWR-TD----RYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAA--RALLDHT 140 (171)
T ss_pred HHHHHHHH-hc----cCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHH--HHhhccC
Confidence 44433332 12 456766 55555433 4899999999999984 999999999999995 6666663
No 45
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.92 E-value=4.3e-24 Score=171.96 Aligned_cols=147 Identities=16% Similarity=0.087 Sum_probs=118.4
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeE-cCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~l 114 (210)
||++|++++||||||+|+|.+ +.++.+++.+||++| +++++|++||..+|+|.|.+.++.+++.|+. +. ++..
T Consensus 2 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~~ 76 (172)
T PRK05456 2 TTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRAA 76 (172)
T ss_pred cEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHHH
Confidence 599999999999999999999 888889999999999 9999999999999999999999999999882 22 4666
Q ss_pred HHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeee--ceEEEccCCchhhhhh---HH----HHHH
Q 028367 115 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH--KVGGFFNKNSIYDTFC---FL----SAIW 185 (210)
Q Consensus 115 a~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~--~~~a~G~gs~~a~~~~---~~----~~~~ 185 (210)
++.+..+.. + .-.+|+.+++|++ | .|+||.+|+.|+..+. ++.|+|+|+.+|++++ .. +|..
T Consensus 77 a~l~~~l~~-~---~~~~~l~~~~lv~--d---~~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~meA~~ 147 (172)
T PRK05456 77 VELAKDWRT-D---RYLRRLEAMLIVA--D---KEHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDLSAEE 147 (172)
T ss_pred HHHHHHHHh-c---cCCCccEEEEEEE--c---CCcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCCCHHH
Confidence 654433321 1 1236888999994 3 3699999999999766 7999999999999995 11 3455
Q ss_pred HHHHHHHHHHHh
Q 028367 186 IYNAIIVYILHW 197 (210)
Q Consensus 186 ~~~~~~~~~~~~ 197 (210)
+.-+++..|..|
T Consensus 148 la~kai~~A~~R 159 (172)
T PRK05456 148 IAEKALKIAADI 159 (172)
T ss_pred HHHHHHHHHHHh
Confidence 555566666554
No 46
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.6e-25 Score=181.80 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=143.9
Q ss_pred ccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 028367 34 AAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVD 112 (210)
Q Consensus 34 ~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~ 112 (210)
++|||++|+.++||||+++|+|.+ ++.+..++.+||+.|.++|+||.+|-.+|...+.+-+-.+.++|+++.++++++-
T Consensus 35 kTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv 114 (271)
T KOG0173|consen 35 KTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPRVV 114 (271)
T ss_pred ccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCcee
Confidence 345699999999999999999999 7777789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHHHHHHH
Q 028367 113 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIV 192 (210)
Q Consensus 113 ~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~ 192 (210)
...+++.+.+.+|. --.++.+||+|+|.+ ||+||.+-|.|+.....+.+.|+|+..|.+. ++.+|.+++...
T Consensus 115 ~A~~mlkQ~LFrYq-----G~IgA~LiiGGvD~T-GpHLy~i~phGStd~~Pf~alGSGslaAmsv--lEsr~k~dlt~e 186 (271)
T KOG0173|consen 115 TALRMLKQHLFRYQ-----GHIGAALILGGVDPT-GPHLYSIHPHGSTDKLPFTALGSGSLAAMSV--LESRWKPDLTKE 186 (271)
T ss_pred eHHHHHHHHHHHhc-----CcccceeEEccccCC-CCceEEEcCCCCcCccceeeeccchHHHHHH--HHHhcCcccCHH
Confidence 99999999998772 247899999999998 9999999999999999999999999999987 899999988887
Q ss_pred HHHH
Q 028367 193 YILH 196 (210)
Q Consensus 193 ~~~~ 196 (210)
.|+.
T Consensus 187 ea~~ 190 (271)
T KOG0173|consen 187 EAIK 190 (271)
T ss_pred HHHH
Confidence 7764
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.92 E-value=4.3e-24 Score=171.30 Aligned_cols=132 Identities=13% Similarity=0.065 Sum_probs=109.1
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeE-cCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~l 114 (210)
||+||++++||||||+|+|.+ +.++.+++.+||++| +++++|+++|..+|++.|.+.++.+++.|+.+. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 599999999999999999998 888889999999999 599999999999999999999999999988743 3555
Q ss_pred HHHHHHHHHHhhhhcCcccce-EEEEEEEEeCCCCcEEEEECCCCceeee--ceEEEccCCchhhhhhHHHHHH
Q 028367 115 AKWIADKSQVYTQHAYMRPLG-VVAMVLSIDEECGPRLFKCDPAGHFFGH--KVGGFFNKNSIYDTFCFLSAIW 185 (210)
Q Consensus 115 a~~ls~~~~~~t~~~~~rP~g-v~~ivaG~D~~~gp~Ly~vD~~Gs~~~~--~~~a~G~gs~~a~~~~~~~~~~ 185 (210)
++.++++ + ..+.+|+- +.++++++ ++||.+|+.|++.++ ++.++|+|+.+|.+++ ++.|
T Consensus 76 a~l~~~~-~----~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~l--d~~y 137 (171)
T TIGR03692 76 VELAKDW-R----TDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAA--RALL 137 (171)
T ss_pred HHHHHHH-h----hcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHH--HHhh
Confidence 6655542 1 12344443 66666533 489999999999996 6999999999999995 5555
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.44 E-value=3.5e-14 Score=76.23 Aligned_cols=23 Identities=83% Similarity=1.328 Sum_probs=22.2
Q ss_pred CCcccceeCCCCccchhhhHHHH
Q 028367 9 YDRHITIFSPEGRLFQVEYAFKA 31 (210)
Q Consensus 9 yd~~~t~Fsp~Grl~Qveya~ka 31 (210)
||+++|+|||||||+|||||.||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999986
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.9e-09 Score=82.93 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=104.9
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcC-cEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITK-YLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~-~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~l 114 (210)
||+++++-++-|+||.|-+.+ ++.+-..+..|+.+|.. ++..+++|-++|+..|.+.+..+++.|.-. |
T Consensus 5 TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~---------L 75 (178)
T COG5405 5 TTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGD---------L 75 (178)
T ss_pred EEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCc---------H
Confidence 599999999999999999999 88777778888877776 899999999999999999999999887522 2
Q ss_pred HHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeee--ceEEEccCCchhhhhh-------HHHHHH
Q 028367 115 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH--KVGGFFNKNSIYDTFC-------FLSAIW 185 (210)
Q Consensus 115 a~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~--~~~a~G~gs~~a~~~~-------~~~~~~ 185 (210)
.+..-++.+.+......|-+..-++|+ |++ .++-+...|-+.+. +..|+|+|..+|..-. -++|+.
T Consensus 76 ~raavelaKdwr~Dk~lr~LEAmllVa--d~~---~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~lsA~e 150 (178)
T COG5405 76 FRAAVELAKDWRTDKYLRKLEAMLLVA--DKT---HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELSARE 150 (178)
T ss_pred HHHHHHHHHhhhhhhHHHHHhhheeEe--CCC---cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCCHHH
Confidence 222222222221122345566777776 444 57888888988853 5899999999998875 234455
Q ss_pred HHHHHHHHH
Q 028367 186 IYNAIIVYI 194 (210)
Q Consensus 186 ~~~~~~~~~ 194 (210)
+.++.+..+
T Consensus 151 Ia~~sl~iA 159 (178)
T COG5405 151 IAEKSLKIA 159 (178)
T ss_pred HHHHHHhhh
Confidence 555544443
No 50
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00042 Score=56.83 Aligned_cols=140 Identities=9% Similarity=0.011 Sum_probs=94.3
Q ss_pred ceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEc---C-cEEEEEecChHHHHHHHHHHHHHHHH--HHHHhCCCCC
Q 028367 37 VTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPIT---K-YLGLLATGMTADARTLVQQARYEAAE--FRFKYGYEMP 110 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~---~-~i~~~~sG~~~D~~~l~~~~r~~~~~--~~~~~g~~i~ 110 (210)
|=|||++...|.|+++|.|.+...---....|.|... + -+.++.+|..+-.|.+.+.+....+. +.... .-++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~-n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLL-NIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhh-cchh
Confidence 4689999999999999999873321112345555443 2 36778899999999999998877752 11111 2345
Q ss_pred HHHHHHHHHHHHHHhhhhc------CcccceEEEEEEEEeCCCCcEEEEECCCCceeee----ceEEEccCCchhhhh
Q 028367 111 VDVLAKWIADKSQVYTQHA------YMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH----KVGGFFNKNSIYDTF 178 (210)
Q Consensus 111 ~~~la~~ls~~~~~~t~~~------~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~----~~~a~G~gs~~a~~~ 178 (210)
+-..+..+.+..++-..+. ..--|.|+++++|.=.+..|.||.+-|.|++.+- .+.-+|.. .+-+|+
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKPi 157 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKPI 157 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcccc-ccCchh
Confidence 5666666666665442111 1134789999999876656899999999999853 56667753 344555
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=77.56 E-value=4.3 Score=33.31 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=18.6
Q ss_pred ceEEEEEcCCEEEEEEecCCC
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP 57 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~ 57 (210)
+.+||.-+++|.|+|.|+|..
T Consensus 2 SLII~y~GknGaViaGDkR~I 22 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRNI 22 (194)
T ss_pred eEEEEEecCCCcEEeccceee
Confidence 378999999999999999953
No 52
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=56.98 E-value=13 Score=24.44 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=27.3
Q ss_pred ceeCC-CCccchhhhHHHHHhccCceEEEEEcCC
Q 028367 14 TIFSP-EGRLFQVEYAFKAVKAAGVTSIGVRGKD 46 (210)
Q Consensus 14 t~Fsp-~Grl~Qveya~kav~~gg~tvIgik~~d 46 (210)
|.||+ +|....-+|..++..+|- ..+|+.=.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~-~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGL-KAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCC-CEEEEeeCC
Confidence 57888 999999999999999988 888877655
No 53
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.55 E-value=67 Score=27.58 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=37.3
Q ss_pred ceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 116 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~ 116 (210)
|.+|+..+++|.|+|.|+|. +.+-|.-.|-..|-+.+ -.|.=-+-++|++
T Consensus 2 tLviay~gknGaviaGDrR~---------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r 51 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE---------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELAR 51 (293)
T ss_pred eEEEEEecCCCcEEeccceE---------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHH
Confidence 47899999999999999996 45667777766665544 2344445555666
Q ss_pred HHHH
Q 028367 117 WIAD 120 (210)
Q Consensus 117 ~ls~ 120 (210)
...+
T Consensus 52 ~aee 55 (293)
T COG4079 52 KAEE 55 (293)
T ss_pred HHHH
Confidence 5544
No 54
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=43.72 E-value=51 Score=22.06 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 028367 91 VQQARYEAAEFRFKYGYEMPVDVLAKWIA 119 (210)
Q Consensus 91 ~~~~r~~~~~~~~~~g~~i~~~~la~~ls 119 (210)
.+++++-......++|+.++.+.+|..+.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 45666777778889999999999999864
No 55
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=40.36 E-value=58 Score=19.85 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=23.5
Q ss_pred ceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEE
Q 028367 14 TIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVV 51 (210)
Q Consensus 14 t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVla 51 (210)
.+-.|||+..|+. .+- ..|.+.+..|+|+.
T Consensus 4 Gii~~dG~~~q~~-------~~~-a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 4 GIITPDGTNVQFP-------HGV-ANIVLIGPSGAVLS 33 (40)
T ss_pred ceECCCCCEEECC-------ccc-ceEEEECCceEEee
Confidence 4567999999987 344 47888999999984
No 56
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.93 E-value=53 Score=30.26 Aligned_cols=120 Identities=16% Similarity=0.129 Sum_probs=74.5
Q ss_pred CcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCC------
Q 028367 74 KYLGLLATGMTADARTLVQQARYEAAEFRFKYGY-EMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE------ 146 (210)
Q Consensus 74 ~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~-~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~------ 146 (210)
|-|+++-+|..--.-.+.=.++...++-+.-+.. --|.++||..|+......++..+.| +..+++|.|-.
T Consensus 100 dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr---~~~lvGG~~m~~q~~~L 176 (476)
T KOG0330|consen 100 DVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLR---VAVLVGGMDMMLQANQL 176 (476)
T ss_pred cEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeE---EEEEecCchHHHHHHHh
Confidence 4466666666554444444444433322221221 1277999999999998887666655 99999999841
Q ss_pred -CCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHHHHHHHHHHHh
Q 028367 147 -CGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYILHW 197 (210)
Q Consensus 147 -~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~~~ 197 (210)
..|++..- .-|..+..---.-|..-+..+-+++++|..+.+-++...+..
T Consensus 177 ~kkPhilVa-TPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ 227 (476)
T KOG0330|consen 177 SKKPHILVA-TPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDY 227 (476)
T ss_pred hcCCCEEEe-CcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHH
Confidence 36888543 445554433334466666777888899998888665444433
No 57
>KOG1939 consensus Oxoprolinase [Amino acid transport and metabolism]
Probab=31.55 E-value=21 Score=35.66 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.7
Q ss_pred CCCCCCCCCcccceeCCCCccc
Q 028367 2 SRGSGGGYDRHITIFSPEGRLF 23 (210)
Q Consensus 2 ~~~~~~~yd~~~t~Fsp~Grl~ 23 (210)
|-++|.|.|+++..|+|||-|.
T Consensus 754 StNiKERLDfSCALF~pdGgLV 775 (1247)
T KOG1939|consen 754 STNIKERLDFSCALFSPDGGLV 775 (1247)
T ss_pred ccchhhhccceeEeEcCCCCee
Confidence 5578999999999999999875
No 58
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=31.17 E-value=22 Score=25.95 Aligned_cols=10 Identities=50% Similarity=0.969 Sum_probs=7.7
Q ss_pred ceeCCCCccc
Q 028367 14 TIFSPEGRLF 23 (210)
Q Consensus 14 t~Fsp~Grl~ 23 (210)
..|||||||.
T Consensus 18 Gefs~DGkLv 27 (109)
T COG4831 18 GEFSPDGKLV 27 (109)
T ss_pred ceeCCCCceE
Confidence 5788888874
No 59
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.10 E-value=60 Score=24.07 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=26.7
Q ss_pred eeeeEcCcEEEEEecChHHHHHHHHHHHHHH
Q 028367 68 HLFPITKYLGLLATGMTADARTLVQQARYEA 98 (210)
Q Consensus 68 KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~ 98 (210)
-+++|-++.++.+.|..+|.-.+.++++...
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 4788999999999999999999998887543
No 60
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=25.56 E-value=56 Score=24.85 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=25.0
Q ss_pred ceeC-CCCccchhhhHHHHHhccCceEEEEEcC
Q 028367 14 TIFS-PEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (210)
Q Consensus 14 t~Fs-p~Grl~Qveya~kav~~gg~tvIgik~~ 45 (210)
|.|| ++|..-.-||..+|.++|- +.|||+=.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~Gl-~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKGL-DAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTTE-SEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcCC-CEEEEcCC
Confidence 5678 8999999999999999987 77777544
No 61
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=24.68 E-value=90 Score=25.24 Aligned_cols=37 Identities=27% Similarity=0.187 Sum_probs=27.6
Q ss_pred ceeCCCCccchhhhHHH-HHhccCceEEEEEcCCEEEEE
Q 028367 14 TIFSPEGRLFQVEYAFK-AVKAAGVTSIGVRGKDSVCVV 51 (210)
Q Consensus 14 t~Fsp~Grl~Qveya~k-av~~gg~tvIgik~~dgVVla 51 (210)
--+||.|+=.-|=-|.| |.++|- ++||++++||=-++
T Consensus 114 igISTSGNS~nVl~Ai~~Ak~~gm-~vI~ltG~~GG~~~ 151 (176)
T COG0279 114 IGISTSGNSKNVLKAIEAAKEKGM-TVIALTGKDGGKLA 151 (176)
T ss_pred EEEeCCCCCHHHHHHHHHHHHcCC-EEEEEecCCCcccc
Confidence 34788887776666665 456676 99999999997775
No 62
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=24.02 E-value=2.1e+02 Score=21.06 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=28.9
Q ss_pred ecChHHHHHHHHHHHHHHHHH--HHHh-C---C----CCCHHHHHHHHHHHHHHhh
Q 028367 81 TGMTADARTLVQQARYEAAEF--RFKY-G---Y----EMPVDVLAKWIADKSQVYT 126 (210)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~--~~~~-g---~----~i~~~~la~~ls~~~~~~t 126 (210)
.|+.-|+..+.+.++..+..+ +..+ . . .+|++.+|.++...+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 466778888888888755442 2222 0 1 1789999999999887653
No 63
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=23.68 E-value=1.3e+02 Score=24.72 Aligned_cols=35 Identities=11% Similarity=-0.011 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeC
Q 028367 107 YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE 145 (210)
Q Consensus 107 ~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~ 145 (210)
.+-+|+.++..++.+++.|.++++.+. ++|.|+.-
T Consensus 43 ~~rtP~~~a~Dl~~~i~~y~~~w~~~~----vvLiGYSF 77 (192)
T PF06057_consen 43 SERTPEQTAADLARIIRHYRARWGRKR----VVLIGYSF 77 (192)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCce----EEEEeecC
Confidence 366889999999999999987776653 47788864
No 64
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=22.13 E-value=43 Score=19.14 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=8.9
Q ss_pred CcccceeCCCCccc
Q 028367 10 DRHITIFSPEGRLF 23 (210)
Q Consensus 10 d~~~t~Fsp~Grl~ 23 (210)
+...-.||||||-+
T Consensus 10 ~~~~p~~SpDGk~i 23 (39)
T PF07676_consen 10 DDGSPAWSPDGKYI 23 (39)
T ss_dssp SEEEEEE-TTSSEE
T ss_pred cccCEEEecCCCEE
Confidence 33466899999765
No 65
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=21.77 E-value=92 Score=26.10 Aligned_cols=28 Identities=25% Similarity=0.301 Sum_probs=25.0
Q ss_pred ceeCCCCccchhhhHHHHHhccCceEEEEE
Q 028367 14 TIFSPEGRLFQVEYAFKAVKAAGVTSIGVR 43 (210)
Q Consensus 14 t~Fsp~Grl~Qveya~kav~~gg~tvIgik 43 (210)
|.|| +|.....|++.+|..+|- ..++++
T Consensus 9 T~~s-dg~~~~~e~~~~A~~~g~-~~~~iT 36 (237)
T COG1387 9 TVFS-DGEATPEEMVEAAIELGL-EYIAIT 36 (237)
T ss_pred cccc-cCCCCHHHHHHHHHHcCC-eEEEEe
Confidence 7899 999999999999999998 777775
No 66
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=21.48 E-value=3.1e+02 Score=19.51 Aligned_cols=47 Identities=21% Similarity=0.147 Sum_probs=37.5
Q ss_pred ecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 028367 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127 (210)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~ 127 (210)
|--..|++.+++.+|..++-.+-.--.+-+-+-|++.+-+.++.|-.
T Consensus 39 seq~~e~~eiAsq~r~~i~amRsiGt~~~~~~Gl~dDlle~Lq~yQk 85 (95)
T PF08289_consen 39 SEQAAEAMEIASQARSMIQAMRSIGTHPKNSEGLADDLLENLQAYQK 85 (95)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHH
Confidence 34578999999999999988776655666777799998888887743
No 67
>PRK07328 histidinol-phosphatase; Provisional
Probab=20.58 E-value=99 Score=26.17 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=29.5
Q ss_pred CCccc-ceeCCCCccchhhhHHHHHhccCceEEEEEcC
Q 028367 9 YDRHI-TIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (210)
Q Consensus 9 yd~~~-t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~ 45 (210)
.|.++ |.||++|.-.--||+.+|+.+|- ..+|++-.
T Consensus 4 ~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl-~~i~~TdH 40 (269)
T PRK07328 4 VDYHMHTPLCGHAVGTPEEYVQAARRAGL-KEIGFTDH 40 (269)
T ss_pred eeeccCCCCCCCCCCCHHHHHHHHHHCCC-CEEEEecC
Confidence 45443 57999998888899999999998 99999854
Done!