Query 028367
Match_columns 210
No_of_seqs 108 out of 1075
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 17:08:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nzj_F Proteasome component C1 100.0 1.7E-52 5.8E-57 360.8 20.5 191 1-196 1-194 (288)
2 1ryp_A 20S proteasome; multica 100.0 3.8E-52 1.3E-56 350.3 20.6 186 8-196 2-195 (243)
3 3h4p_A Proteasome subunit alph 100.0 1.4E-52 4.8E-57 357.4 17.1 185 1-189 4-188 (264)
4 1iru_G 20S proteasome; cell cy 100.0 1.5E-51 5.2E-56 349.0 20.7 190 4-196 2-191 (254)
5 1iru_A 20S proteasome; cell cy 100.0 2E-51 6.9E-56 346.4 21.3 191 1-196 3-196 (246)
6 1yar_A Proteasome alpha subuni 100.0 2.5E-51 8.6E-56 343.2 20.7 189 1-196 3-191 (233)
7 1iru_B 20S proteasome; cell cy 100.0 3.2E-51 1.1E-55 342.5 20.7 186 7-196 3-188 (233)
8 1ryp_C 20S proteasome; multica 100.0 8.2E-51 2.8E-55 342.2 20.9 184 8-194 4-188 (244)
9 1iru_C 20S proteasome; cell cy 100.0 9.7E-51 3.3E-55 345.3 20.8 189 1-196 1-191 (261)
10 1ryp_F 20S proteasome; multica 100.0 1.4E-50 4.6E-55 338.9 21.1 185 7-197 3-191 (233)
11 1ryp_B 20S proteasome; multica 100.0 1.4E-50 4.9E-55 342.1 21.2 188 1-195 1-189 (250)
12 1ryp_G 20S proteasome; multica 100.0 1.5E-50 5.2E-55 341.0 20.8 188 6-196 1-190 (244)
13 1iru_D 20S proteasome; cell cy 100.0 7.5E-51 2.6E-55 343.6 18.4 185 9-196 3-189 (248)
14 1j2p_A Alpha-ring, proteasome 100.0 2.1E-50 7.3E-55 340.3 21.0 178 8-190 7-184 (246)
15 1ryp_D 20S proteasome; multica 100.0 1.5E-50 5.2E-55 340.1 19.9 186 8-196 1-191 (241)
16 1iru_E 20S proteasome; cell cy 100.0 2E-50 6.7E-55 339.5 18.2 185 7-195 6-195 (241)
17 1iru_F 20S proteasome; cell cy 100.0 1.4E-49 4.7E-54 338.7 22.7 185 7-197 4-190 (263)
18 1ryp_E 20S proteasome; multica 100.0 1.8E-49 6.2E-54 333.6 17.2 183 10-195 1-189 (242)
19 1q5q_A Proteasome alpha-type s 100.0 9.6E-40 3.3E-44 277.4 17.2 172 13-196 4-182 (259)
20 3mi0_A Proteasome subunit alph 100.0 7.1E-38 2.4E-42 264.5 19.8 160 24-195 16-181 (248)
21 1yar_H Proteasome beta subunit 100.0 8.8E-36 3E-40 246.7 21.5 160 30-196 3-172 (217)
22 1iru_N 20S proteasome; cell cy 100.0 1.9E-36 6.5E-41 250.7 14.8 160 30-195 3-166 (219)
23 1q5r_H Proteasome beta-type su 100.0 1.4E-35 4.7E-40 256.0 20.4 168 28-197 58-242 (294)
24 1j2q_H Proteasome beta subunit 100.0 2.9E-35 9.9E-40 240.6 21.1 147 37-190 1-149 (202)
25 2jay_A Proteasome; hydrolase; 100.0 5.8E-36 2E-40 258.1 17.5 184 7-195 23-221 (291)
26 1ryp_H 20S proteasome; multica 100.0 1.9E-35 6.6E-40 242.3 19.3 162 29-197 3-174 (205)
27 1ryp_N 20S proteasome; multica 100.0 2.3E-36 7.9E-41 252.5 13.7 153 30-187 3-161 (233)
28 1iru_M 20S proteasome; cell cy 100.0 1.6E-35 5.6E-40 243.9 18.6 143 32-179 6-149 (213)
29 3h4p_a Proteasome subunit beta 100.0 1.8E-35 6E-40 245.3 18.6 158 35-197 1-169 (219)
30 3nzj_K Proteasome component PR 100.0 2.9E-35 1E-39 253.2 20.0 166 27-197 67-242 (287)
31 1ryp_K 20S proteasome; multica 100.0 5.4E-35 1.9E-39 238.2 20.1 158 37-196 2-170 (198)
32 1iru_H 20S proteasome; cell cy 100.0 1.1E-34 3.7E-39 237.8 21.3 156 37-197 1-166 (205)
33 1q5q_H Proteasome beta-type su 100.0 9.6E-35 3.3E-39 243.2 20.8 160 37-197 1-177 (235)
34 3nzj_H Proteasome component PU 100.0 1.3E-34 4.4E-39 246.2 21.3 162 28-196 22-193 (261)
35 1ryp_L 20S proteasome; multica 100.0 1E-34 3.6E-39 239.1 19.8 157 37-197 1-167 (212)
36 1g0u_M Proteasome component PR 100.0 7.2E-36 2.5E-40 254.4 12.5 160 23-187 29-194 (266)
37 1iru_L 20S proteasome; cell cy 100.0 2E-34 6.9E-39 235.9 20.0 156 37-197 1-166 (204)
38 1ryp_M 20S proteasome; multica 100.0 8.6E-35 3E-39 241.5 17.8 143 32-179 6-150 (222)
39 1iru_K 20S proteasome; cell cy 100.0 4.6E-34 1.6E-38 233.3 20.0 153 37-193 2-155 (201)
40 3unf_H Proteasome subunit beta 100.0 7.2E-34 2.5E-38 238.1 21.2 154 37-196 1-164 (234)
41 1ryp_I 20S proteasome; multica 100.0 1.6E-33 5.5E-38 233.9 21.1 155 37-197 1-165 (222)
42 1iru_J 20S proteasome; cell cy 100.0 9.3E-34 3.2E-38 232.2 18.6 159 33-196 6-176 (205)
43 1ryp_J 20S proteasome; multica 100.0 2.6E-33 9E-38 229.3 20.9 159 32-196 5-175 (204)
44 1iru_I 20S proteasome; cell cy 100.0 9.2E-33 3.1E-37 231.2 21.3 155 37-197 1-165 (234)
45 3unf_N Proteasome subunit beta 100.0 1.7E-32 5.8E-37 223.6 19.1 154 37-197 1-165 (199)
46 1m4y_A ATP-dependent protease 100.0 6.7E-29 2.3E-33 198.1 17.7 134 37-186 1-138 (171)
47 2z3b_A ATP-dependent protease 100.0 3.8E-29 1.3E-33 201.4 16.1 144 33-193 3-154 (180)
48 1g3k_A ATP-dependent protease 100.0 2.8E-28 9.6E-33 195.1 17.0 134 37-186 1-139 (174)
49 3jx9_A Putative phosphoheptose 38.1 20 0.00069 27.6 2.8 31 13-44 81-112 (170)
50 2yxo_A Histidinol phosphatase; 31.8 28 0.00096 27.6 2.8 31 14-45 8-38 (267)
51 3rj2_X ORF158L protein, putati 25.2 21 0.00071 26.1 0.7 18 7-24 53-70 (138)
No 1
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.7e-52 Score=360.77 Aligned_cols=191 Identities=29% Similarity=0.454 Sum_probs=174.0
Q ss_pred CCCCCCCCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEE
Q 028367 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (210)
Q Consensus 1 m~~~~~~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~ 80 (210)
||| ++.+||+++|+|||||||||||||.||+++|+ |+|||+++||||||+|+|.+.+++..+..+||++|+++|+|++
T Consensus 1 m~~-~~~~yd~~~t~fSP~Grl~QvEYA~kAv~~Gt-T~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~ 78 (288)
T 3nzj_F 1 MTS-IGTGYDLSNSVFSPDGRNFQVEYAVKAVENGT-TSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVY 78 (288)
T ss_dssp -----CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSC-CEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEE
T ss_pred CCC-CcCCccCCcccCCCCCchHHHHHHHHHHhcCC-cEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEe
Confidence 886 99999999999999999999999999999998 9999999999999999999977766667899999999999999
Q ss_pred ecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCce
Q 028367 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 160 (210)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~ 160 (210)
+|+.+|++.|++++|.+++.|+++++++|+++.+++++++++|.||++++.|||+|++||+|||++ ||+||++||+|++
T Consensus 79 aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~-Gp~Ly~iDp~G~~ 157 (288)
T 3nzj_F 79 SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSY 157 (288)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT-EEEEEEECTTSCE
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCC-CCEEEEECCCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999999986 8999999999999
Q ss_pred eeeceEEEccCCchhhhhhHHHHH---HHHHHHHHHHHH
Q 028367 161 FGHKVGGFFNKNSIYDTFCFLSAI---WIYNAIIVYILH 196 (210)
Q Consensus 161 ~~~~~~a~G~gs~~a~~~~~~~~~---~~~~~~~~~~~~ 196 (210)
.+++++|+|+|++++++++ +.. |..+..+..++.
T Consensus 158 ~~~~~~aiGsgs~~a~~~L--ek~~~~~~~~ms~eEAv~ 194 (288)
T 3nzj_F 158 WGYKGAATGKGRQSAKAEL--EKLVDHHPEGLSAREAVK 194 (288)
T ss_dssp EEBSEEEESTTHHHHHHHH--HHHHHHCTTCCCHHHHHH
T ss_pred EEcCEEEEcCcHHHHHHHH--HHhccccCCCCCHHHHHH
Confidence 9999999999999999994 333 555555554443
No 2
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=3.8e-52 Score=350.30 Aligned_cols=186 Identities=52% Similarity=0.818 Sum_probs=176.1
Q ss_pred CCCcccceeCCCCccchhhhHHHHHhc-cCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHH
Q 028367 8 GYDRHITIFSPEGRLFQVEYAFKAVKA-AGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 8 ~yd~~~t~Fsp~Grl~Qveya~kav~~-gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
+||+++|+|||||||+|||||.||+++ |+ |+|||+++||||||+|+|.+++++.+++.+||++|+++++|+++|+.+|
T Consensus 2 ~yd~~~t~fsp~Grl~QvEYA~~av~~~Gt-t~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 2 GYDRHITIFSPEGRLYQVEYAFKATNQTNI-NSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp GGGGTSSSCCTTSCCHHHHHHHHHTTTTCC-CEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCceECCCCeeHHHHHHHHHHhcCCC-cEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 799999999999999999999999999 87 9999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceE
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVG 166 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~ 166 (210)
++.+.+.+|.+++.|++++|++|+++.+++++++++|.|+++.+.|||+|++||+|||+++||+||++||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~ 160 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT 160 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999888999999999999997558999999999999999999
Q ss_pred EEccCCchhhhhhHHHHHHHH-------HHHHHHHHH
Q 028367 167 GFFNKNSIYDTFCFLSAIWIY-------NAIIVYILH 196 (210)
Q Consensus 167 a~G~gs~~a~~~~~~~~~~~~-------~~~~~~~~~ 196 (210)
|+|+|++.++++ ++..|.. +..+..++.
T Consensus 161 a~G~gs~~a~~~--Le~~~~~~~~~~~~~ms~eea~~ 195 (243)
T 1ryp_A 161 ATGPKQQEITTN--LENHFKKSKIDHINEESWEKVVE 195 (243)
T ss_dssp EESTTHHHHHHH--HHHHHHHHCSSSCCCSSHHHHHH
T ss_pred EECCCcHHHHHH--HHHHhhhcccccccCCCHHHHHH
Confidence 999999999998 4677777 666666654
No 3
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.4e-52 Score=357.43 Aligned_cols=185 Identities=37% Similarity=0.612 Sum_probs=164.2
Q ss_pred CCCCCCCCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEE
Q 028367 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (210)
Q Consensus 1 m~~~~~~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~ 80 (210)
|..+.+++||+++|+|||||||+|||||.||+++|+ |+|||+++||||||+|+|.+.+++.+++.+||++|+++++|++
T Consensus 4 ~~~~~~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gt-t~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~ 82 (264)
T 3h4p_A 4 MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGT-TAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAAT 82 (264)
T ss_dssp ------------CCCCCSSSSCHHHHHHHHHHHHSC-CEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEE
T ss_pred CcCCCccccCCCcceECCCCeeHHHHhHHHHHhcCC-cEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEe
Confidence 555667899999999999999999999999999998 9999999999999999999988888899999999999999999
Q ss_pred ecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCce
Q 028367 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 160 (210)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~ 160 (210)
+|+.+|++.|++.+|.+++.|+++++++++++.+++++++++|.|+++.+.|||++++||+|||++ ||+||++||+|++
T Consensus 83 aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~-gp~Ly~iDp~G~~ 161 (264)
T 3h4p_A 83 SGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKN-EARLFETDPSGAL 161 (264)
T ss_dssp EECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETT-EEEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCC-cCEEEEECCCceE
Confidence 999999999999999999999999999999999999999999999999999999999999999975 8999999999999
Q ss_pred eeeceEEEccCCchhhhhhHHHHHHHHHH
Q 028367 161 FGHKVGGFFNKNSIYDTFCFLSAIWIYNA 189 (210)
Q Consensus 161 ~~~~~~a~G~gs~~a~~~~~~~~~~~~~~ 189 (210)
.+++++|+|+|+++|++++ +..|..+.
T Consensus 162 ~~~~~~aiGsgs~~a~~~L--e~~~~~~m 188 (264)
T 3h4p_A 162 IEYKATAIGSGRPVVMELL--EKEYRDDI 188 (264)
T ss_dssp EEESEEEESTTHHHHTTTH--HHHCCTTC
T ss_pred EecCeEEECCCHHHHHHHH--HHhccCCC
Confidence 9999999999999999995 33444333
No 4
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=1.5e-51 Score=348.99 Aligned_cols=190 Identities=35% Similarity=0.517 Sum_probs=175.7
Q ss_pred CCCCCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecC
Q 028367 4 GSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGM 83 (210)
Q Consensus 4 ~~~~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~ 83 (210)
+++++||+++|+|||||||+|||||.|++++|+ |+|||+++||||||+|+|.+.++...++.+||++|+++|+|+++|+
T Consensus 2 ~~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~ 80 (254)
T 1iru_G 2 SIGTGYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGL 80 (254)
T ss_dssp CCCSSTTSCTTCCCTTSCCHHHHHHHHHHHTSC-CEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEEC
T ss_pred CcccccCCCCccCCcCCccHHHHhHHHHHhcCC-CEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecC
Confidence 367799999999999999999999999999988 9999999999999999999976666788999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeee
Q 028367 84 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 163 (210)
Q Consensus 84 ~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~ 163 (210)
.+|++.|.+++|.+++.|+++++++++++.+++++++++|.|+++++.|||++++||+|||+++||+||++||+|++.++
T Consensus 81 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 160 (254)
T 1iru_G 81 LADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGY 160 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEB
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEee
Confidence 99999999999999999999999999999999999999999999888999999999999995558999999999999999
Q ss_pred ceEEEccCCchhhhhhHHHHHHHHHHHHHHHHH
Q 028367 164 KVGGFFNKNSIYDTFCFLSAIWIYNAIIVYILH 196 (210)
Q Consensus 164 ~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~~ 196 (210)
+++|+|+|+++|++++ +..|..+..+..++.
T Consensus 161 ~~~aiGsgs~~a~~~L--e~~~~~~ms~eea~~ 191 (254)
T 1iru_G 161 WGCAIGKARQAAKTEI--EKLQMKEMTCRDIVK 191 (254)
T ss_dssp SEEEESTTHHHHHHHH--TTSCGGGCCHHHHHH
T ss_pred eeEEecCccHHHHHHH--HHhccCCCCHHHHHH
Confidence 9999999999999994 445555555555554
No 5
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=2e-51 Score=346.44 Aligned_cols=191 Identities=55% Similarity=0.869 Sum_probs=178.2
Q ss_pred CCCCCCCCCCcccceeCCCCccchhhhHHHHHhc-cCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEE
Q 028367 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKA-AGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLL 79 (210)
Q Consensus 1 m~~~~~~~yd~~~t~Fsp~Grl~Qveya~kav~~-gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~ 79 (210)
||+ +++||+++|+|||||||+|||||.|++++ |+ |+|||+++||||||+|+|.+++++.+++.+||++|+++++++
T Consensus 3 m~~--~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~ 79 (246)
T 1iru_A 3 RGS--SAGFDRHITIFSPEGRLYQVEYAFKAINQGGL-TSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCV 79 (246)
T ss_dssp CSC--CCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCC-EEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEE
T ss_pred CCc--cCCcCCCCccCCCCCeehHHHHHHHHHhcCCC-CEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEE
Confidence 564 57899999999999999999999999999 87 999999999999999999999898888999999999999999
Q ss_pred EecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCc
Q 028367 80 ATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGH 159 (210)
Q Consensus 80 ~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs 159 (210)
++|+.+|++.+.+.++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++||+|||+++||+||.+||+|+
T Consensus 80 ~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~ 159 (246)
T 1iru_A 80 MTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGY 159 (246)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSC
T ss_pred EeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCee
Confidence 99999999999999999999999999999999999999999999999988899999999999999755899999999999
Q ss_pred eeeeceEEEccCCchhhhhhHHHHHHHH--HHHHHHHHH
Q 028367 160 FFGHKVGGFFNKNSIYDTFCFLSAIWIY--NAIIVYILH 196 (210)
Q Consensus 160 ~~~~~~~a~G~gs~~a~~~~~~~~~~~~--~~~~~~~~~ 196 (210)
+.+++++|+|+|+++|+++ ++..|.. +..+..++.
T Consensus 160 ~~~~~~~aiG~gs~~a~~~--Le~~~~~~~~ms~eea~~ 196 (246)
T 1iru_A 160 YCGFKATAAGVKQTESTSF--LEKKVKKKFDWTFEQTVE 196 (246)
T ss_dssp EEEBSEEEEETTHHHHHHH--HHHHTTSCCCCCHHHHHH
T ss_pred EEEeeEEEECCCcHHHHHH--HHHhhcccCCCCHHHHHH
Confidence 9999999999999999998 4666766 655555543
No 6
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2.5e-51 Score=343.17 Aligned_cols=189 Identities=36% Similarity=0.555 Sum_probs=167.5
Q ss_pred CCCCCCCCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEE
Q 028367 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (210)
Q Consensus 1 m~~~~~~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~ 80 (210)
|+| ++||+++|+|||||||+|+|||.|++++|+ |+|||+++||||||+|+|.+.+++.+++.+||++|++++++++
T Consensus 3 m~~---~~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~ 78 (233)
T 1yar_A 3 QGQ---MAYSRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVT 78 (233)
T ss_dssp -------------CCCCTTSCCHHHHHHHHHHTTSC-CEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEE
T ss_pred ccc---ccCCCCCceECcCCeeHHHHhHHHHHhcCC-cEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEE
Confidence 564 589999999999999999999999999988 9999999999999999999977888889999999999999999
Q ss_pred ecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCce
Q 028367 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 160 (210)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~ 160 (210)
||+.+|++.+.++++.+++.|+++++++++++.+++++++++|+|+++.+.|||++++||+|||++ ||+||.+||+|++
T Consensus 79 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~-gp~Ly~id~~G~~ 157 (233)
T 1yar_A 79 SGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQI-GPRLFDCDPAGTI 157 (233)
T ss_dssp EEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSS-CEEEEEECTTCCE
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCC-CCEEEEECCCCCE
Confidence 999999999999999999999999999999999999999999999998899999999999999985 9999999999999
Q ss_pred eeeceEEEccCCchhhhhhHHHHHHHHHHHHHHHHH
Q 028367 161 FGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYILH 196 (210)
Q Consensus 161 ~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~~ 196 (210)
.+++++|+|+|+++|++++ +..|..+..+..++.
T Consensus 158 ~~~~~~aiG~gs~~a~~~L--e~~~~~~~s~eea~~ 191 (233)
T 1yar_A 158 NEYKATAIGSGKDAVVSFL--EREYKENLPEKEAVT 191 (233)
T ss_dssp EEBSEEEESTTHHHHHHHH--HHHCCTTCCHHHHHH
T ss_pred EeeeEEEEcCCcHHHHHHH--HHHhccCCCHHHHHH
Confidence 9999999999999999994 555655555554443
No 7
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=3.2e-51 Score=342.53 Aligned_cols=186 Identities=34% Similarity=0.530 Sum_probs=174.7
Q ss_pred CCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHH
Q 028367 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 7 ~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
++||+++|+|||||||+|||||.+++++|+ |+|||+++||||||+|+|.+++++.+++.+||++|++++++++||+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 3 RGYSFSLTTFSPSGKLVQIEYALAAVAGGA-PSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCSBSCCCCTTSCCHHHHHHHHHHHTSC-CEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCccCCceeECCCCeEehhHhHHHHHHcCC-cEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 479999999999999999999999999998 9999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceE
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVG 166 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~ 166 (210)
++.+.++++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++||+|||++ ||+||.+||+|++.+++++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~ 160 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKAT 160 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSS-SEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCC-CCeEEEECCCCCEEEeeEE
Confidence 999999999999999999999999999999999999999999899999999999999965 8999999999999999999
Q ss_pred EEccCCchhhhhhHHHHHHHHHHHHHHHHH
Q 028367 167 GFFNKNSIYDTFCFLSAIWIYNAIIVYILH 196 (210)
Q Consensus 167 a~G~gs~~a~~~~~~~~~~~~~~~~~~~~~ 196 (210)
|+|+|++++++++ +..|..+..+..++.
T Consensus 161 aiG~gs~~a~~~L--e~~~~~~ms~eea~~ 188 (233)
T 1iru_B 161 AMGKNYVNGKTFL--EKRYNEDLELEDAIH 188 (233)
T ss_dssp EESTTHHHHHHHH--HHHCCTTCCHHHHHH
T ss_pred EECCCCHHHHHHH--HHHhccCCCHHHHHH
Confidence 9999999999984 555666655555544
No 8
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=8.2e-51 Score=342.20 Aligned_cols=184 Identities=33% Similarity=0.578 Sum_probs=170.8
Q ss_pred CCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceee-cCCcceeeeEcCcEEEEEecChHH
Q 028367 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 8 ~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~-~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
+||+++|+|||||||+|+|||.|++++|+ |+|||+++||||||+|+|.+.+++. +++.+||++|++++++++||+.+|
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTTSC-CEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhcCC-cEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 79999999999999999999999999988 9999999999999999999976766 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceE
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVG 166 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~ 166 (210)
++.+.+.++.+++.|+++++++++++.+++++++++|+|+++.+.|||++++||+|||+++||+||.+||+|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAI 162 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999994458999999999999999999
Q ss_pred EEccCCchhhhhhHHHHHHHHHHHHHHH
Q 028367 167 GFFNKNSIYDTFCFLSAIWIYNAIIVYI 194 (210)
Q Consensus 167 a~G~gs~~a~~~~~~~~~~~~~~~~~~~ 194 (210)
|+|+|+++|++++ +..|..+..+..+
T Consensus 163 aiGsgs~~a~~~L--e~~~~~~ms~eea 188 (244)
T 1ryp_C 163 SVGANTSAAQTLL--QMDYKDDMKVDDA 188 (244)
T ss_dssp EESTTHHHHHHHH--HHHCCTTCCHHHH
T ss_pred EECCCcHHHHHHH--HHhhhcCCCHHHH
Confidence 9999999999995 4444444444433
No 9
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=9.7e-51 Score=345.31 Aligned_cols=189 Identities=32% Similarity=0.514 Sum_probs=174.6
Q ss_pred CCCCCCCCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceee-cCCcceeeeEcCcEEEE
Q 028367 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLL 79 (210)
Q Consensus 1 m~~~~~~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~-~~~~~KI~~I~~~i~~~ 79 (210)
|++ +||+++|+|||||||+|||||.+++++|+ |+|||+++||||||+|+|.+.++.. +++.+||++|+++++++
T Consensus 1 m~~----~yd~~~t~fsp~Grl~QvEYA~~av~~Gt-t~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~ 75 (261)
T 1iru_C 1 MSR----RYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACS 75 (261)
T ss_dssp -CT----TTCCCTTCCCTTSCCHHHHHHHHHHTTSC-CEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEE
T ss_pred CCC----ccCCCCccCCCCCeehHHHhHHHHHhcCC-cEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEE
Confidence 777 89999999999999999999999999998 9999999999999999999955554 55689999999999999
Q ss_pred EecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCc
Q 028367 80 ATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGH 159 (210)
Q Consensus 80 ~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs 159 (210)
+||+.+|++.|.+.++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++||+|||+++||+||.+||+|+
T Consensus 76 ~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~ 155 (261)
T 1iru_C 76 VAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGN 155 (261)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTE
T ss_pred EeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCce
Confidence 99999999999999999999999999999999999999999999999988999999999999999755899999999999
Q ss_pred eeeeceEEEccCCchhhhhhHHHHHHHH-HHHHHHHHH
Q 028367 160 FFGHKVGGFFNKNSIYDTFCFLSAIWIY-NAIIVYILH 196 (210)
Q Consensus 160 ~~~~~~~a~G~gs~~a~~~~~~~~~~~~-~~~~~~~~~ 196 (210)
+.+++++|+|+|+++|+++ ++..|.. +..+..++.
T Consensus 156 ~~~~~~~aiGsgs~~a~~~--Le~~~~~~~ms~eeA~~ 191 (261)
T 1iru_C 156 YGGWKATCIGNNSAAAVSM--LKQDYKEGEMTLKSALA 191 (261)
T ss_dssp EEECSEEEESTTTTHHHHH--HHHHCCTTCCCHHHHHH
T ss_pred EEeeeeEEeCcccHHHHHH--HHHhhccCCCCHHHHHH
Confidence 9999999999999999998 5777777 666655544
No 10
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.4e-50 Score=338.88 Aligned_cols=185 Identities=25% Similarity=0.381 Sum_probs=173.6
Q ss_pred CCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHH
Q 028367 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 7 ~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
++||+++|+|||||||+|||||.|++++|+ |+|||+++||||||+|+|.+.++. ++.+||++|++++++++||+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD 79 (233)
T 1ryp_F 3 NNYDGDTVTFSPTGRLFQVEYALEAIKQGS-VTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPD 79 (233)
T ss_dssp HHHSSCTTCCCTTSCCHHHHHHHHHHHTSC-CEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred CcccCCCccCCCCCeehHHHHHHHHHHcCC-CEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHH
Confidence 369999999999999999999999999998 999999999999999999997765 37799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceE
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVG 166 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~ 166 (210)
++.+.+.+|.+++.|++++|++|+++.+++++++++|.|||+.+.|||++++||+|||++ ||+||++||+|++.+++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~ 158 (233)
T 1ryp_F 80 ARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGT 158 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT-EEEEEEECTTSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCC-cCEEEEECCCCCeeeeeEE
Confidence 999999999999999999999999999999999999999999999999999999999986 8999999999999999999
Q ss_pred EEccCCchhhhhhHHHHHHHH--HH--HHHHHHHh
Q 028367 167 GFFNKNSIYDTFCFLSAIWIY--NA--IIVYILHW 197 (210)
Q Consensus 167 a~G~gs~~a~~~~~~~~~~~~--~~--~~~~~~~~ 197 (210)
|+|+|+++|+++ ++..|.. +. .+..++..
T Consensus 159 aiG~gs~~a~~~--Le~~~~~~~~m~~s~eea~~~ 191 (233)
T 1ryp_F 159 AIGARSQGAKTY--LERTLDTFIKIDGNPDELIKA 191 (233)
T ss_dssp EESTTHHHHHHH--HHHHHHHHTTCCSCHHHHHHH
T ss_pred EECCCcHHHHHH--HHHHhccccccCCCHHHHHHH
Confidence 999999999998 5777777 66 67766653
No 11
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.4e-50 Score=342.11 Aligned_cols=188 Identities=30% Similarity=0.442 Sum_probs=175.3
Q ss_pred CCCCCCCCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEE
Q 028367 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (210)
Q Consensus 1 m~~~~~~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~ 80 (210)
|++ +||+++|+|||||||+|||||.|++++|+ |+|||+++||||||+|+|.+++++.+++.+||++|+++++|++
T Consensus 1 ~~~----~yd~~~t~fsp~Grl~QvEyA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~ 75 (250)
T 1ryp_B 1 MTD----RYSFSLTTFSPSGKLGQIDYALTAVKQGV-TSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVY 75 (250)
T ss_dssp CCC----CCCSBSSCBCTTSCBHHHHHHHHHHHTSC-CEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEE
T ss_pred CCC----cccCCceeECCCCccHHHHhHHHHHHcCC-cEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEe
Confidence 777 89999999999999999999999999988 9999999999999999999988988889999999999999999
Q ss_pred ecChHHHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCc
Q 028367 81 TGMTADARTLVQQARYEAAE-FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGH 159 (210)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~-~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs 159 (210)
||+.+|++.+.+.++.+++. |+..++.+++++.+++.++++++.++++.+.|||++++||+|||+++||+||.+||+|+
T Consensus 76 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~ 155 (250)
T 1ryp_B 76 SGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGS 155 (250)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSC
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCC
Confidence 99999999999999999999 99999999999999999999999999988999999999999999866899999999999
Q ss_pred eeeeceEEEccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 160 FFGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 160 ~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
+.+++++|+|+|+++|++++ +..|..+..+..|+
T Consensus 156 ~~~~~~~aiGsgs~~a~~~L--e~~~~~~ms~eea~ 189 (250)
T 1ryp_B 156 YFPWKATAIGKGSVAAKTFL--EKRWNDELELEDAI 189 (250)
T ss_dssp EEEBSEEEESTTHHHHHHHH--HHHCCTTCCHHHHH
T ss_pred EEeeceeEecCccHHHHHHH--HHHhccCCCHHHHH
Confidence 99999999999999999995 55555554444443
No 12
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.5e-50 Score=341.03 Aligned_cols=188 Identities=29% Similarity=0.440 Sum_probs=171.9
Q ss_pred CCCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChH
Q 028367 6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTA 85 (210)
Q Consensus 6 ~~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~ 85 (210)
+++||+++|+||||||++|+|||.|++++|+ |+|||+++||||||+|+|.+.+++..+..+||++|+++++|++||+.+
T Consensus 1 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~a 79 (244)
T 1ryp_G 1 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGT-TSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIP 79 (244)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSC-CEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHH
T ss_pred CCCccCCcccCCcCCchHHHHhHHHHHHCCC-CEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHH
Confidence 3589999999999999999999999999998 999999999999999999996666655569999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeece
Q 028367 86 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKV 165 (210)
Q Consensus 86 D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~ 165 (210)
|++.+.++++.++++|+++++++++++.+++++++++|.||++++.|||++++||+|||++ ||+||.+||+|++.++++
T Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~ 158 (244)
T 1ryp_G 80 DGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKG 158 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT-EEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCC-cCEEEEECCCCCEEEeeE
Confidence 9999999999999999999999999999999999999999998889999999999999975 899999999999999999
Q ss_pred EEEccCCchhhhhhHHHH--HHHHHHHHHHHHH
Q 028367 166 GGFFNKNSIYDTFCFLSA--IWIYNAIIVYILH 196 (210)
Q Consensus 166 ~a~G~gs~~a~~~~~~~~--~~~~~~~~~~~~~ 196 (210)
+|+|+|+++|++++ ++. .|..+..+..++.
T Consensus 159 ~aiG~gs~~a~~~L-e~~~~~~~~~ms~eea~~ 190 (244)
T 1ryp_G 159 AATGKGRQSAKAEL-EKLVDHHPEGLSAREAVK 190 (244)
T ss_dssp EEESTTHHHHHHHH-HHHHHHCTTCCCHHHHHH
T ss_pred EEECCChHHHHHHH-HHhHhhcCCCCCHHHHHH
Confidence 99999999999994 332 2655555555544
No 13
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=7.5e-51 Score=343.57 Aligned_cols=185 Identities=35% Similarity=0.560 Sum_probs=173.9
Q ss_pred CCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHHH
Q 028367 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (210)
Q Consensus 9 yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (210)
||+++|+|||||||+|||||.|++++|+ |+|||+++||||||+|+|.+.+++.+++.+||++|+++++++++|+.+|++
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 81 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADAR 81 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSC-CEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCC-CEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHH
Confidence 9999999999999999999999999998 999999999999999999997788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEE
Q 028367 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGF 168 (210)
Q Consensus 89 ~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~ 168 (210)
.+.+.++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++||+|||+++||+||.+||+|++.+++++|+
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 161 (248)
T 1iru_D 82 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAI 161 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEE
Confidence 99999999999999999999999999999999999999988899999999999999555999999999999999999999
Q ss_pred ccCCchhhhhhHHHHHHHHHH--HHHHHHH
Q 028367 169 FNKNSIYDTFCFLSAIWIYNA--IIVYILH 196 (210)
Q Consensus 169 G~gs~~a~~~~~~~~~~~~~~--~~~~~~~ 196 (210)
|+|+++++++ ++..|..+. .+..++.
T Consensus 162 G~gs~~a~~~--Le~~~~~~m~~s~eea~~ 189 (248)
T 1iru_D 162 GRGAKSVREF--LEKNYTDEAIETDDLTIK 189 (248)
T ss_dssp STTHHHHHHH--HTTTCCSSTTCSHHHHHH
T ss_pred CCCcHHHHHH--HHHhhcccccCCHHHHHH
Confidence 9999999998 466676666 5555544
No 14
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=2.1e-50 Score=340.29 Aligned_cols=178 Identities=37% Similarity=0.599 Sum_probs=168.3
Q ss_pred CCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHH
Q 028367 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (210)
Q Consensus 8 ~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (210)
+||+++|+|||||||+|+|||.+++++|+ |+|||+++||||||+|+|.+.+++.+++.+||++|+++++++++|+.+|+
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~ 85 (246)
T 1j2p_A 7 GYDRAITVFSPDGRLFQVEYAREAVKRGA-TAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADA 85 (246)
T ss_dssp TSSSCTTCCCTTSCCHHHHHHHHHHHTSC-CEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHHH
T ss_pred CcCCCCceECCCCeehHHHhHHHHHHcCC-cEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHHH
Confidence 89999999999999999999999999988 99999999999999999999888878899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEE
Q 028367 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGG 167 (210)
Q Consensus 88 ~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a 167 (210)
+.+.+.+|.+++.|+++++++++++.+++++++++|.|+++.+.|||++++||+||| + ||+||.+||+|++.+++++|
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~-gp~Ly~idp~G~~~~~~~~a 163 (246)
T 1j2p_A 86 RVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-E-VPKLYETDPSGALLEYKATA 163 (246)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-S-SEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-C-CCEEEEECCCceEEeeeEEE
Confidence 999999999999999999999999999999999999999988999999999999999 5 99999999999999999999
Q ss_pred EccCCchhhhhhHHHHHHHHHHH
Q 028367 168 FFNKNSIYDTFCFLSAIWIYNAI 190 (210)
Q Consensus 168 ~G~gs~~a~~~~~~~~~~~~~~~ 190 (210)
+|+|+++|++++ +..|..+..
T Consensus 164 iGsgs~~a~~~L--e~~~~~~ms 184 (246)
T 1j2p_A 164 IGMGRMAVTEFF--EKEYRDDLS 184 (246)
T ss_dssp ESTTHHHHHHHH--HHHCCTTCC
T ss_pred ECCCcHHHHHHH--HHHhccCCC
Confidence 999999999995 344443333
No 15
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1.5e-50 Score=340.13 Aligned_cols=186 Identities=31% Similarity=0.526 Sum_probs=172.2
Q ss_pred CCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceee-cCCcceeeeEcCcEEEEEecChHH
Q 028367 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 8 ~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~-~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
+||+++|+|||||||+|||||.|++++|+ |+|||+++||||||+|+|.+.+++. +++.+||++|+++++++++|+.+|
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 79 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGT-CAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNAD 79 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSC-CEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCC-CEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHH
Confidence 59999999999999999999999999998 9999999999999999999966665 448999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCC-CCcEEEEECCCCceeeece
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE-CGPRLFKCDPAGHFFGHKV 165 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~-~gp~Ly~vD~~Gs~~~~~~ 165 (210)
++.+.+.++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++||+|||++ +||+||.+||+|++.++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~ 159 (241)
T 1ryp_D 80 SRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeee
Confidence 999999999999999999999999999999999999999988889999999999999984 5999999999999999999
Q ss_pred EEEccCCchhhhhhHHHHHH---HHHHHHHHHHH
Q 028367 166 GGFFNKNSIYDTFCFLSAIW---IYNAIIVYILH 196 (210)
Q Consensus 166 ~a~G~gs~~a~~~~~~~~~~---~~~~~~~~~~~ 196 (210)
+|+|+|+++++++ ++..| ..+..+..++.
T Consensus 160 ~aiG~gs~~a~~~--Le~~~~~~~~~ms~eea~~ 191 (241)
T 1ryp_D 160 QTIGRNSKTVREF--LEKNYDRKEPPATVEECVK 191 (241)
T ss_dssp EEESTTHHHHHHH--HHTTCCTTSCCCSHHHHHH
T ss_pred EEECCCcHHHHHH--HHHhhhcccCCCCHHHHHH
Confidence 9999999999998 46667 56655555543
No 16
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=2e-50 Score=339.46 Aligned_cols=185 Identities=29% Similarity=0.560 Sum_probs=169.3
Q ss_pred CCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHH
Q 028367 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 7 ~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
++||+++|+|||||||+|||||.|++++|+ |+|||+++||||||+|+|.+.+++.+++.+||++|++++++++||+.+|
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD 84 (241)
T 1iru_E 6 SEYDRGVNTFSPEGRLFQVEYDIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIAD 84 (241)
T ss_dssp --CCCCTTCBCTTSCBHHHHHHHHHHTTSC-CEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHH
T ss_pred CCCCCCCceECCCCccHHHHHHHHHHHcCC-cEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChHH
Confidence 589999999999999999999999999988 9999999999999999999966666889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcC-----cccceEEEEEEEEeCCCCcEEEEECCCCcee
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY-----MRPLGVVAMVLSIDEECGPRLFKCDPAGHFF 161 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~-----~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~ 161 (210)
++.+.+.++.+++.|+++++++++++.+++++++++|+|+++.+ .|||++++||+|||++ ||+||.+||+|++.
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~-gp~Ly~idp~G~~~ 163 (241)
T 1iru_E 85 AKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFV 163 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETT-EEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCC-CCEEEEECCCCcEE
Confidence 99999999999999999999999999999999999999988777 8999999999999954 89999999999999
Q ss_pred eeceEEEccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 162 GHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 162 ~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
++++.|+|+|++++++++ +..|..+..+..|+
T Consensus 164 ~~~~~aiGsgs~~a~~~L--e~~~~~~ms~eea~ 195 (241)
T 1iru_E 164 QCDARAIGSASEGAQSSL--QELYHKSMTLKEAI 195 (241)
T ss_dssp EBSEEEESTTHHHHHHHH--HHHCCTTCCHHHHH
T ss_pred ecceEEECCCcHHHHHHH--HHHhccCCCHHHHH
Confidence 999999999999999995 55555554444443
No 17
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=1.4e-49 Score=338.69 Aligned_cols=185 Identities=28% Similarity=0.493 Sum_probs=173.0
Q ss_pred CCCCcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHH
Q 028367 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (210)
Q Consensus 7 ~~yd~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D 86 (210)
++||+++|+|||||||+|||||.|++++|+ |+|||+++||||||+|+|.+.++. ++.+||++|+++|+|++||+.+|
T Consensus 4 ~~yd~~~t~fsP~Grl~QvEYA~~av~~Gt-t~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD 80 (263)
T 1iru_F 4 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGS-ATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTAD 80 (263)
T ss_dssp CTTTSCTTCCCTTSCCHHHHHHHHHHHHSC-CEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred CCCCCCCccCCCCCeehHHHHHHHHHHcCC-cEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHH
Confidence 589999999999999999999999999988 999999999999999999997765 47799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceE
Q 028367 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVG 166 (210)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~ 166 (210)
++.|.+.++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++||+|||++ ||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~ 159 (263)
T 1iru_F 81 ARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDM-GPHIFQTCPSANYFDCRAM 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT-EEEEEEECSSSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCC-CCEEEEECCCCCEEEeeEE
Confidence 999999999999999999999999999999999999999999999999999999999985 8999999999999999999
Q ss_pred EEccCCchhhhhhHHHHHHHH--HHHHHHHHHh
Q 028367 167 GFFNKNSIYDTFCFLSAIWIY--NAIIVYILHW 197 (210)
Q Consensus 167 a~G~gs~~a~~~~~~~~~~~~--~~~~~~~~~~ 197 (210)
|+|+|+++++++ ++..|.. +..+..++.-
T Consensus 160 aiGsgs~~a~~~--Le~~~~~~~~ms~eea~~l 190 (263)
T 1iru_F 160 SIGARSQSARTY--LERHMSEFMECNLNELVKH 190 (263)
T ss_dssp EESTTHHHHHHH--HHHHHHHHTTCCHHHHHHH
T ss_pred EcCcccHHHHHH--HHHHhcccCCCCHHHHHHH
Confidence 999999999998 4666766 6666666553
No 18
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.8e-49 Score=333.61 Aligned_cols=183 Identities=29% Similarity=0.502 Sum_probs=168.7
Q ss_pred CcccceeCCCCccchhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHHHH
Q 028367 10 DRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADART 89 (210)
Q Consensus 10 d~~~t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 89 (210)
|+++|+|||||||+|||||.+++++|+ |+|||+++||||||+|+|.+.+++.+++.+||++|++++++++||+.+|++.
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 79 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARS 79 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSC-CEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCC-CEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHH
Confidence 788999999999999999999999988 9999999999999999999966666888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcC------cccceEEEEEEEEeCCCCcEEEEECCCCceeee
Q 028367 90 LVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY------MRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 163 (210)
Q Consensus 90 l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~------~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~ 163 (210)
+.++++.+++.|++++|++++++.+++.+++++|.|+++.+ .|||++++||+|||+++||+||.+||+|++.++
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (242)
T 1ryp_E 80 MIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRY 159 (242)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEecc
Confidence 99999999999999999999999999999999999998877 899999999999995558999999999999999
Q ss_pred ceEEEccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 164 KVGGFFNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 164 ~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
++.|+|+|++++++++ +..|..+..+..++
T Consensus 160 ~~~aiGsgs~~a~~~L--e~~~~~~ms~eea~ 189 (242)
T 1ryp_E 160 NAKAIGSGSEGAQAEL--LNEWHSSLTLKEAE 189 (242)
T ss_dssp SEEEESTTHHHHHHHH--HHHCCTTCCHHHHH
T ss_pred CEEEECCCCHHHHHHH--HHhhccCCCHHHHH
Confidence 9999999999999995 55555554444443
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=9.6e-40 Score=277.43 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=151.9
Q ss_pred cceeCCCCccc-hhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHHHHHH
Q 028367 13 ITIFSPEGRLF-QVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLV 91 (210)
Q Consensus 13 ~t~Fsp~Grl~-Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~ 91 (210)
...|||||++. |+|||.|++++|+ |+|||+++||||||+|+| +++.+||++|+++|+|+++|+.+|++.|.
T Consensus 4 p~~~sPe~~~~~qvEYA~~av~~Gt-t~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~ 75 (259)
T 1q5q_A 4 PYYASAEQIMRDRSELARKGIARGR-SVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLR 75 (259)
T ss_dssp -----CHHHHHHHHHHHHHHHHTSC-CEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCC-cEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHH
Confidence 34689999996 9999999999998 999999999999999999 36789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHHHH-HHHHhhhhcCcccceEEEEEEEEe--C-CCCcEEEEECCCCcee-eece
Q 028367 92 QQARYEAAEFRFKYG-YEMPVDVLAKWIAD-KSQVYTQHAYMRPLGVVAMVLSID--E-ECGPRLFKCDPAGHFF-GHKV 165 (210)
Q Consensus 92 ~~~r~~~~~~~~~~g-~~i~~~~la~~ls~-~~~~~t~~~~~rP~gv~~ivaG~D--~-~~gp~Ly~vD~~Gs~~-~~~~ 165 (210)
++++.+++.|+++++ ++++++.+++++++ +.|.|+ .+.|||+|++||+||| + ++||+||++||+|++. ++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~ 153 (259)
T 1q5q_A 76 RAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHF 153 (259)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSE
T ss_pred HHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCE
Confidence 999999999999998 49999999999999 667786 4789999999999999 3 4499999999999999 7899
Q ss_pred EEEccCCchhhhhhHHHHHHHHHHHHHHHHH
Q 028367 166 GGFFNKNSIYDTFCFLSAIWIYNAIIVYILH 196 (210)
Q Consensus 166 ~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~~ 196 (210)
+|+|+|++.|+++ ++..|..+..+..++.
T Consensus 154 ~aiG~gs~~a~~~--Le~~~~~~ms~eea~~ 182 (259)
T 1q5q_A 154 VVMGGTTEPIATA--MRESYRADLDLEAAVG 182 (259)
T ss_dssp EEESSSHHHHHHH--HHHHCCTTCCHHHHHH
T ss_pred EEECCChHHHHHH--HHhhccCCCCHHHHHH
Confidence 9999999999998 4666766666665554
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=7.1e-38 Score=264.45 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=144.3
Q ss_pred hhhhHHHHHhccCceEEEEEcCCEEEEEEecCCCcceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHH
Q 028367 24 QVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF 103 (210)
Q Consensus 24 Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~ 103 (210)
++|||.|++++|+ |+|||+++||||||+|+| +++.+||++|++||+|+++|+.+|++.|.+.++.+++.|++
T Consensus 16 r~EYA~~av~~Gt-T~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~ 87 (248)
T 3mi0_A 16 RSELARKGIARAK-SVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGY 87 (248)
T ss_dssp HHHHHHHHHHTSC-CEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCC-cEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999988 999999999999999999 35889999999999999999999999999999999999999
Q ss_pred HhC-CCCCHHHHHHHHH-HHHHHhhhhcCcccceEEEEEEEEeC---CCCcEEEEECCCCceee-eceEEEccCCchhhh
Q 028367 104 KYG-YEMPVDVLAKWIA-DKSQVYTQHAYMRPLGVVAMVLSIDE---ECGPRLFKCDPAGHFFG-HKVGGFFNKNSIYDT 177 (210)
Q Consensus 104 ~~g-~~i~~~~la~~ls-~~~~~~t~~~~~rP~gv~~ivaG~D~---~~gp~Ly~vD~~Gs~~~-~~~~a~G~gs~~a~~ 177 (210)
+++ ++++++.|+++++ .+.|.|++ ++|||+|++||+|||+ ++||+||++||+|++.+ ++++|+|+|++.|++
T Consensus 88 ~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~ 165 (248)
T 3mi0_A 88 AYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIAN 165 (248)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHH
Confidence 999 9999999999999 77888987 7899999999999998 35999999999999995 999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 028367 178 FCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~ 195 (210)
++ +..|..+..+..++
T Consensus 166 ~L--e~~y~~~mt~eeai 181 (248)
T 3mi0_A 166 AL--KESYAENASLTDAL 181 (248)
T ss_dssp HH--HHHCCTTCCHHHHH
T ss_pred HH--HhhcCCCCCHHHHH
Confidence 95 44444444444433
No 21
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=8.8e-36 Score=246.65 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=140.4
Q ss_pred HHHhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCC
Q 028367 30 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYE 108 (210)
Q Consensus 30 kav~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~ 108 (210)
+++++|+ |+|||+++||||||+|+|.+ ++++.+++.+||++|++++++++||+.+|++.+.+++|.+++.|+++++++
T Consensus 3 ~~~~~Gt-t~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 3 QTLETGT-TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp ------C-CEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCc-cEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4677887 99999999999999999999 689988999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh---------
Q 028367 109 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC--------- 179 (210)
Q Consensus 109 i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~--------- 179 (210)
++++.+++++++.+|.+ +.|||++++||+||| + ||+||.+||+|++.+++++|+|+|+++|++++
T Consensus 82 ~~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D-~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 155 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQV----KYMPYMVQLLVGGID-T-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMT 155 (217)
T ss_dssp CCHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES-S-SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred CCHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC-C-CCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCC
Confidence 99999999999999764 488999999999999 5 89999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028367 180 FLSAIWIYNAIIVYILH 196 (210)
Q Consensus 180 ~~~~~~~~~~~~~~~~~ 196 (210)
+++|..+.-+++..++.
T Consensus 156 ~eea~~la~~al~~~~~ 172 (217)
T 1yar_H 156 VDEGVDLVIRAISAAKQ 172 (217)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44455555555554444
No 22
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.9e-36 Score=250.66 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=145.4
Q ss_pred HHHhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHH-HhCC
Q 028367 30 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF-KYGY 107 (210)
Q Consensus 30 kav~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~-~~g~ 107 (210)
+++++|+ |+|||+++||||||+|+|.+ ++++.+++.+||++|+++++++++|+.+|++.|.+.+|.+++.|++ ++++
T Consensus 3 ~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 3 NPMVTGT-SVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp SCCSEEC-CCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCccCCc-eEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5788887 99999999999999999999 7888889999999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHH
Q 028367 108 EMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIY 187 (210)
Q Consensus 108 ~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~ 187 (210)
+++++.+++++++.++ +++.+.|||++++||+|||++ ||+||.+||+|++.++++.|+|+|+++|+++ ++..|..
T Consensus 82 ~~~v~~la~~l~~~ly--~~r~~~~P~~v~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~--Le~~~~~ 156 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMY--SRRSKMNPLWNTMVIGGYADG-ESFLGYVDMLGVAYEAPSLATGYGAYLAQPL--LREVLEK 156 (219)
T ss_dssp CCCHHHHHHHHHHHHH--HHHHTTCCCCEEEEEEEEETT-EEEEEEECSSCCEEECSEEECTTHHHHTHHH--HHHHHTS
T ss_pred CCCHHHHHHHHHHHHH--HhcccCCCceEEEEEEEEECC-CCEEEEECCCCCeEECCeEEECccHHHHHHH--HHhhcCC
Confidence 9999999999999995 456678999999999999986 9999999999999999999999999999998 4556655
Q ss_pred --HHHHHHHH
Q 028367 188 --NAIIVYIL 195 (210)
Q Consensus 188 --~~~~~~~~ 195 (210)
+..+..++
T Consensus 157 ~~~mt~eea~ 166 (219)
T 1iru_N 157 QPVLSQTEAR 166 (219)
T ss_dssp CSCCCHHHHH
T ss_pred CCCCCHHHHH
Confidence 44444443
No 23
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.4e-35 Score=256.03 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=152.2
Q ss_pred HHHHHhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhC
Q 028367 28 AFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG 106 (210)
Q Consensus 28 a~kav~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g 106 (210)
|.||+++|+ |+|||+++||||||+|+|.+ ++++.+++.+||++|+++++|+++|+.+|++.|.++++.++++|+++++
T Consensus 58 a~~Av~~Gt-TiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g 136 (294)
T 1q5r_H 58 SGDLAPHGT-TIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEG 136 (294)
T ss_dssp --CCSCBCC-CEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCc-eEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhC
Confidence 889999987 99999999999999999999 6899899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCC-----cEEEEECCCCceeee--ceEEEccCCchhhhhh
Q 028367 107 YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFKCDPAGHFFGH--KVGGFFNKNSIYDTFC 179 (210)
Q Consensus 107 ~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~g-----p~Ly~vD~~Gs~~~~--~~~a~G~gs~~a~~~~ 179 (210)
++++++.+++.+++++|.++++. .|||++++||+|||++++ |+||++||+|++.++ ++.|+|+|+++|++++
T Consensus 137 ~~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~L 215 (294)
T 1q5r_H 137 VPLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSAL 215 (294)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHH
Confidence 99999999999999999988754 899999999999998756 999999999999999 8999999999999997
Q ss_pred ---------HHHHHHHHHHHHHHHHHh
Q 028367 180 ---------FLSAIWIYNAIIVYILHW 197 (210)
Q Consensus 180 ---------~~~~~~~~~~~~~~~~~~ 197 (210)
+++|..+.-+++..++.+
T Consensus 216 e~~y~~~ms~eEAi~la~~aL~~a~~r 242 (294)
T 1q5r_H 216 KKIYSPDSDEETALRAAIESLYDAADD 242 (294)
T ss_dssp HHHCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhh
Confidence 455666666666655554
No 24
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=2.9e-35 Score=240.62 Aligned_cols=147 Identities=18% Similarity=0.267 Sum_probs=135.9
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|+|.+ ++++.+++.+||++|+++++++++|+.+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 599999999999999999999 6888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeec-eEEEccCCchhhhhhHHHHHHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-VGGFFNKNSIYDTFCFLSAIWIYNAI 190 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~-~~a~G~gs~~a~~~~~~~~~~~~~~~ 190 (210)
+++++++|.+ +.|||++++||+|||++ ||+||.+||+|++.+++ ++|+|+|+++|++++ +..|..+..
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~L--e~~~~~~~s 149 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDSE-GKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVL--EDRFTPEIG 149 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEETT-EEEEEEECTTCCEEEESSEEEESTTHHHHHHHH--HHHCCTTCC
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeCC-CCEEEEECCCCCeeecCCEEEEcCCHHHHHHHH--HhhcCCCcC
Confidence 9999999764 48899999999999985 89999999999999999 999999999999995 444443333
No 25
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=5.8e-36 Score=258.06 Aligned_cols=184 Identities=11% Similarity=0.057 Sum_probs=135.6
Q ss_pred CCCCcccceeCCCCcc-----ch--hhhHHHHHhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEE
Q 028367 7 GGYDRHITIFSPEGRL-----FQ--VEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGL 78 (210)
Q Consensus 7 ~~yd~~~t~Fsp~Grl-----~Q--veya~kav~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~ 78 (210)
..|+.-+....||.-. ++ +|||.+ +++|+ |+|||+++||||||+|+|.+ +.++.+++.+||++|+++++|
T Consensus 23 ~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~Gt-TiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~ 100 (291)
T 2jay_A 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGT-TIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTAT 100 (291)
T ss_dssp ------------------------------------C-CEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEE
T ss_pred ccHHHHhhhcChhhccccccccCcCcccccc-ccCCc-EEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEE
Confidence 3566566677776443 22 689999 99987 99999999999999999999 567878899999999999999
Q ss_pred EEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCC-----cEEEE
Q 028367 79 LATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFK 153 (210)
Q Consensus 79 ~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~g-----p~Ly~ 153 (210)
+++|+.+|++.+.+.++.+++.|++.++++++++.+++.+++++|.+++ ...|||+|++||+|||++++ |+||+
T Consensus 101 ~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~ 179 (291)
T 2jay_A 101 GIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVS 179 (291)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEE
T ss_pred EEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEE
Confidence 9999999999999999999999999999999999999999999998865 45789999999999998755 89999
Q ss_pred ECCCCcee--eeceEEEccCCchhhhhhHHHHHHHHHHHHHHHH
Q 028367 154 CDPAGHFF--GHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVYIL 195 (210)
Q Consensus 154 vD~~Gs~~--~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~~~ 195 (210)
+||+|++. ++++.|+|+|+++|++++ +..|..+..+..|+
T Consensus 180 iDp~G~~~e~~~~~~aiGsgs~~a~~~L--e~~~~~~ms~eEAi 221 (291)
T 2jay_A 180 FDAAGGWNIEEEGYQAVGSGSLFAKSSM--KKLYSQVTDGDSGL 221 (291)
T ss_dssp ECTTSCEEECSSSEEEESTTHHHHHHHH--HHHGGGCCSHHHHH
T ss_pred ECCCCcEEecCCCEEEEecCHHHHHHHH--HHhcCCCCCHHHHH
Confidence 99999999 889999999999999995 55555555554443
No 26
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=1.9e-35 Score=242.32 Aligned_cols=162 Identities=12% Similarity=0.158 Sum_probs=145.3
Q ss_pred HHHHhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCC
Q 028367 29 FKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGY 107 (210)
Q Consensus 29 ~kav~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~ 107 (210)
.|++++|+ |+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||+.+|++.+.+++|.+++.|++++++
T Consensus 3 ~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (205)
T 1ryp_H 3 KGEVSLGA-SIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT 81 (205)
T ss_dssp TTCCBCCC-CEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCcCCc-eEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46788987 99999999999999999999 55888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh--------
Q 028367 108 EMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC-------- 179 (210)
Q Consensus 108 ~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~-------- 179 (210)
++++.+++++++++|++++ + |++++||+|||+++||+||.+||+|++.++++.|+|+|+++|++++
T Consensus 82 -~~v~~la~~l~~~~~~~~~----~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 155 (205)
T 1ryp_H 82 -PSTETAASVFKELCYENKD----N-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENM 155 (205)
T ss_dssp -CCHHHHHHHHHHHHHHTTT----T-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTC
T ss_pred -CCHHHHHHHHHHHHHhhhc----C-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCC
Confidence 9999999999999998854 2 9999999999985589999999999999999999999999999996
Q ss_pred -HHHHHHHHHHHHHHHHHh
Q 028367 180 -FLSAIWIYNAIIVYILHW 197 (210)
Q Consensus 180 -~~~~~~~~~~~~~~~~~~ 197 (210)
+++|..+.-.++..++.+
T Consensus 156 s~eea~~l~~~al~~a~~~ 174 (205)
T 1ryp_H 156 SKEETVDFIKHSLSQAIKW 174 (205)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 445555555555555544
No 27
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=2.3e-36 Score=252.54 Aligned_cols=153 Identities=12% Similarity=0.127 Sum_probs=141.9
Q ss_pred HHHhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHH-----
Q 028367 30 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF----- 103 (210)
Q Consensus 30 kav~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~----- 103 (210)
+++++|+ |+|||+++||||||+|+|.+ +.++.+++.+||++|+++++|+++|+.+|++.|.+++|.+++.|++
T Consensus 3 ~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 3 QPIVTGT-SVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCEEEC-CEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccccCCc-eEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 5678888 99999999999999999999 7888888999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHH
Q 028367 104 KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSA 183 (210)
Q Consensus 104 ~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~ 183 (210)
+++++++++.+++++++.+ |+++.+.|||++++||+|||+++||+||.+||+|++.++++.|+|+|+++|++++ +.
T Consensus 82 ~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~L--e~ 157 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL--RK 157 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHH--TT
T ss_pred hcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHH--HH
Confidence 9999999999999999999 4556678999999999999986689999999999999999999999999999984 44
Q ss_pred HHHH
Q 028367 184 IWIY 187 (210)
Q Consensus 184 ~~~~ 187 (210)
.|..
T Consensus 158 ~~~~ 161 (233)
T 1ryp_N 158 VVDR 161 (233)
T ss_dssp TCSS
T ss_pred hhcc
Confidence 4544
No 28
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.6e-35 Score=243.94 Aligned_cols=143 Identities=15% Similarity=0.250 Sum_probs=133.1
Q ss_pred HhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 028367 32 VKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMP 110 (210)
Q Consensus 32 v~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~ 110 (210)
+++|+ |+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||+.+|++.|.+.++.+++.|+++++++++
T Consensus 6 v~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (213)
T 1iru_M 6 VFNGG-TILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMT 84 (213)
T ss_dssp CCCCC-EEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCCCC-cEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45787 99999999999999999999 45566778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh
Q 028367 111 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC 179 (210)
Q Consensus 111 ~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~ 179 (210)
++.+++++++++ |+++ .|||++++||+|||++++|+||.+||+|++.+++++|+|+|+++|++++
T Consensus 85 v~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~L 149 (213)
T 1iru_M 85 TGAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLL 149 (213)
T ss_dssp HHHHHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHH
Confidence 999999999999 5543 7999999999999977569999999999999999999999999999984
No 29
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.8e-35 Score=245.25 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=143.2
Q ss_pred cCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 028367 35 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 113 (210)
Q Consensus 35 gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~ 113 (210)
|+ |+|||+++||||||+|+|.+ +.++.+++.+||++|+++++|+++|+.+|++.+.+.+|.+++.|+++++++++++.
T Consensus 1 Gt-t~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 79 (219)
T 3h4p_a 1 MT-TTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLA 79 (219)
T ss_dssp -C-CEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHH
T ss_pred Cc-cEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 44 99999999999999999998 67888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeec-eEEEccCCchhhhhh---------HHHH
Q 028367 114 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-VGGFFNKNSIYDTFC---------FLSA 183 (210)
Q Consensus 114 la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~-~~a~G~gs~~a~~~~---------~~~~ 183 (210)
+++++++++|.+ +.|||++++||+|||+++||+||++||+|++.+++ +.|+|+|+++|++++ +++|
T Consensus 80 la~~l~~~~~~~----~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea 155 (219)
T 3h4p_a 80 CATLLSNILHSS----RMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEG 155 (219)
T ss_dssp HHHHHHHHHHHT----TTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHH
T ss_pred HHHHHHHHHHHh----cCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHH
Confidence 999999999876 47899999999999985589999999999999999 999999999999996 4556
Q ss_pred HHHHHHHHHHHHHh
Q 028367 184 IWIYNAIIVYILHW 197 (210)
Q Consensus 184 ~~~~~~~~~~~~~~ 197 (210)
..+.-.++..++.+
T Consensus 156 ~~la~~al~~~~~r 169 (219)
T 3h4p_a 156 IKLALNALKSAMER 169 (219)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666655554
No 30
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=2.9e-35 Score=253.18 Aligned_cols=166 Identities=13% Similarity=0.135 Sum_probs=145.8
Q ss_pred hHHHHHhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHh
Q 028367 27 YAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKY 105 (210)
Q Consensus 27 ya~kav~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~ 105 (210)
++.+++++|+ |+|||+++||||||+|+|.+ ++++.+++.+||++|+++++++++|+.+|++.+.+.++.+++.|++++
T Consensus 67 ~~~~~v~~Gt-T~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~ 145 (287)
T 3nzj_K 67 DCKIKIAHGT-TTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELRE 145 (287)
T ss_dssp ---------C-CEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhheccCc-eEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999998 99999999999999999999 788889999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh------
Q 028367 106 GYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC------ 179 (210)
Q Consensus 106 g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~------ 179 (210)
+++++++.+++++++++|.+++ +||++++||+|||+++||+||.+||+|++.++++.|+|+|+++|++++
T Consensus 146 ~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~ 221 (287)
T 3nzj_K 146 KERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW 221 (287)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCT
T ss_pred CCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcC
Confidence 9999999999999999988753 599999999999966689999999999999999999999999999997
Q ss_pred ---HHHHHHHHHHHHHHHHHh
Q 028367 180 ---FLSAIWIYNAIIVYILHW 197 (210)
Q Consensus 180 ---~~~~~~~~~~~~~~~~~~ 197 (210)
+++|..+.-.++..++.+
T Consensus 222 dms~eEAi~la~~aL~~a~~r 242 (287)
T 3nzj_K 222 DLSVEDALYLGKRSILAAAHR 242 (287)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 566777777777777665
No 31
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=5.4e-35 Score=238.19 Aligned_cols=158 Identities=13% Similarity=0.138 Sum_probs=140.1
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|+|.+ +.++.+++.+||++|+++++++++|+.+|++.+.+++|.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 599999999999999999998 5566578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeC-CCCcEEEEECCCCceeeeceEEEccCCchhhhhh---------HHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC---------FLSAIW 185 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~-~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~---------~~~~~~ 185 (210)
+++++.+|.+++ ..+||++++||+|||+ ++||+||.+||+|++.++++.|+|+|+++|++++ +++|..
T Consensus 82 ~~l~~~l~~~~~--~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~ 159 (198)
T 1ryp_K 82 SFVRQELAKSIR--SRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD 159 (198)
T ss_dssp HHHHHHHHHHTT--SSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHhcc--cCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHH
Confidence 999999988763 2359999999999997 4589999999999999999999999999999996 444555
Q ss_pred HHHHHHHHHHH
Q 028367 186 IYNAIIVYILH 196 (210)
Q Consensus 186 ~~~~~~~~~~~ 196 (210)
+.-+++..++.
T Consensus 160 l~~~al~~~~~ 170 (198)
T 1ryp_K 160 LLKLCVQELEK 170 (198)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 32
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.1e-34 Score=237.76 Aligned_cols=156 Identities=12% Similarity=0.120 Sum_probs=140.8
Q ss_pred ceEEEEEcCCEEEEEEecCCCc-ceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVPD-KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~~-~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|+|.+. .++.+++.+||++|++++++++||+.+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999994 588888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh---------HHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC---------FLSAIWI 186 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~---------~~~~~~~ 186 (210)
+++++++|.+++ ||++++||+|||+++||+||.+||+|++.+++++|+|+|+++|++++ +++|..+
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l 155 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF 155 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999998853 99999999999985589999999999999999999999999999996 4445555
Q ss_pred HHHHHHHHHHh
Q 028367 187 YNAIIVYILHW 197 (210)
Q Consensus 187 ~~~~~~~~~~~ 197 (210)
.-+++..++.+
T Consensus 156 ~~~al~~~~~~ 166 (205)
T 1iru_H 156 TANALALAMER 166 (205)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 33
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=9.6e-35 Score=243.20 Aligned_cols=160 Identities=16% Similarity=0.127 Sum_probs=145.7
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|+|.+ ++++.+++.+||++|+++++|++||+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 599999999999999999999 6899899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCC-----cEEEEECCCCceeee--ceEEEccCCchhhhhh---------
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFKCDPAGHFFGH--KVGGFFNKNSIYDTFC--------- 179 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~g-----p~Ly~vD~~Gs~~~~--~~~a~G~gs~~a~~~~--------- 179 (210)
+.+++++|.++++. .|||++++||+|||++++ |+||.+||+|++.++ +++|+|+|+++|++++
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 159 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD 159 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCC
Confidence 99999999987764 899999999999998757 999999999999999 9999999999999996
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 028367 180 FLSAIWIYNAIIVYILHW 197 (210)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~ 197 (210)
+++|..+.-+++..++.+
T Consensus 160 ~eeA~~la~~al~~a~~~ 177 (235)
T 1q5q_H 160 EETALRAAIESLYDAADD 177 (235)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 445555555555555553
No 34
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.3e-34 Score=246.16 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=139.1
Q ss_pred HHHHHhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhC
Q 028367 28 AFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG 106 (210)
Q Consensus 28 a~kav~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g 106 (210)
..|++++|+ |+|||+++||||||+|+|.+ +.++.+++.+||++|+++++|++||+.+|++.+.+.++.+++.|+++++
T Consensus 22 ~~kav~~Gt-Tivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~ 100 (261)
T 3nzj_H 22 QPKATSTGT-TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS 100 (261)
T ss_dssp --------C-CEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccCc-eEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhC
Confidence 358899998 99999999999999999999 6788889999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh-------
Q 028367 107 YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC------- 179 (210)
Q Consensus 107 ~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~------- 179 (210)
++++++.+++++++.+++| .|||++++||+|||++ ||+||++||+|++.+++++|+|+|+++|++++
T Consensus 101 ~~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 174 (261)
T 3nzj_H 101 REPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQD 174 (261)
T ss_dssp SCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSS
T ss_pred CCCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeCC-CCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccC
Confidence 9999999999999988654 4799999999999986 89999999999999999999999999999996
Q ss_pred --HHHHHHHHHHHHHHHHH
Q 028367 180 --FLSAIWIYNAIIVYILH 196 (210)
Q Consensus 180 --~~~~~~~~~~~~~~~~~ 196 (210)
+++|..+.-.++..++.
T Consensus 175 ms~eEA~~la~~al~~a~~ 193 (261)
T 3nzj_H 175 LTKEEAIKLASDAIQAGIW 193 (261)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 34444444444444443
No 35
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1e-34 Score=239.10 Aligned_cols=157 Identities=13% Similarity=0.157 Sum_probs=141.9
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|+|.+ ++++.+++.+||++|++++++++||+.+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 599999999999999999999 6899889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh---------HHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC---------FLSAIWI 186 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~---------~~~~~~~ 186 (210)
+++++++|+|++ .||++++||+|||+++||+||.+||+|++.++++.|+|+|+++|++++ +++|..+
T Consensus 81 ~~l~~~~~~~~~----~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 156 (212)
T 1ryp_L 81 KILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 156 (212)
T ss_dssp HHHHHHHHHTTT----SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCC----CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 999999998864 499999999999965589999999999999999999999999999996 3445555
Q ss_pred HHHHHHHHHHh
Q 028367 187 YNAIIVYILHW 197 (210)
Q Consensus 187 ~~~~~~~~~~~ 197 (210)
.-.++..++.+
T Consensus 157 a~~al~~~~~r 167 (212)
T 1ryp_L 157 GKRSILAAAHR 167 (212)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 36
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=7.2e-36 Score=254.41 Aligned_cols=160 Identities=11% Similarity=0.108 Sum_probs=143.8
Q ss_pred chhhhHHHHHhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHH
Q 028367 23 FQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 101 (210)
Q Consensus 23 ~Qveya~kav~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~ 101 (210)
...+.+.+++++|+ |+|||+++||||||+|+|.+ +.++.+++.+||++|+++++|+++|+.+|++.|.+.+|.+++.|
T Consensus 29 ~~~~~~~~av~~Gt-T~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~ 107 (266)
T 1g0u_M 29 SPMVNTQQPIVTGT-SVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTEN 107 (266)
T ss_dssp -----CCCCCEEEC-CEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccCcccCc-eEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHh
Confidence 34567788999988 99999999999999999998 78888889999999999999999999999999999999999999
Q ss_pred HH-----HhCCCCCHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhh
Q 028367 102 RF-----KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYD 176 (210)
Q Consensus 102 ~~-----~~g~~i~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~ 176 (210)
++ +++++++++.+++++++++ |+++.+.|||++++||+|||+++||+||.+||+|++.+++++|+|+|+++|+
T Consensus 108 ~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~ 185 (266)
T 1g0u_M 108 AYDNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMAN 185 (266)
T ss_dssp HTTCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHH
T ss_pred hhccchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHH
Confidence 98 9999999999999999999 4556678999999999999986689999999999999999999999999999
Q ss_pred hhhHHHHHHHH
Q 028367 177 TFCFLSAIWIY 187 (210)
Q Consensus 177 ~~~~~~~~~~~ 187 (210)
+++ +..|..
T Consensus 186 ~~L--e~~~~~ 194 (266)
T 1g0u_M 186 PLL--RKVVDR 194 (266)
T ss_dssp HHH--TTTCSS
T ss_pred HHH--HHhhcc
Confidence 984 444444
No 37
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2e-34 Score=235.94 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=142.0
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|+|.+ ++++.+++.+||++|++++++++||+.+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 599999999999999999999 6888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh---------HHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC---------FLSAIWI 186 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~---------~~~~~~~ 186 (210)
+++++.+|.++ .+||++++||+|||++ ||+||.+||+|++.++++.|+|+|+++|++++ +++|..+
T Consensus 81 ~~l~~~~~~~r----~~~~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l 155 (204)
T 1iru_L 81 KLLANMVYQYK----GMGLSMGTMICGWDKR-GPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDL 155 (204)
T ss_dssp HHHHHHHHTTT----TSCCCBEEEEEEECSS-SEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred HHHHHHHHHhC----CCCeeEEEEEEEEeCC-CCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHH
Confidence 99999998774 4699999999999985 99999999999999999999999999999996 4555556
Q ss_pred HHHHHHHHHHh
Q 028367 187 YNAIIVYILHW 197 (210)
Q Consensus 187 ~~~~~~~~~~~ 197 (210)
.-.++..++.+
T Consensus 156 ~~~al~~~~~r 166 (204)
T 1iru_L 156 ARRAIYQATYR 166 (204)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55566555544
No 38
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=8.6e-35 Score=241.47 Aligned_cols=143 Identities=17% Similarity=0.264 Sum_probs=133.1
Q ss_pred HhccCceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhC-CCC
Q 028367 32 VKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG-YEM 109 (210)
Q Consensus 32 v~~gg~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g-~~i 109 (210)
+++|+ |+|||+++||||||+|+|.+ +.++.+++.+||++|+++++++++|+.+|++.|.+.++.+++.|+++++ +++
T Consensus 6 v~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 6 GDNGG-TILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CCCCC-EEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ccCCc-cEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 46787 99999999999999999999 5556788999999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh
Q 028367 110 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC 179 (210)
Q Consensus 110 ~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~ 179 (210)
+++.+++++++.++ ++ +.|||++++||+|||++++|+||.+||.|++.++++.|+|+|+++|++++
T Consensus 85 ~v~~la~~l~~~ly--~~--r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~L 150 (222)
T 1ryp_M 85 SINSAARNIQHLLY--GK--RFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFL 150 (222)
T ss_dssp CHHHHHHHHHHHHH--TT--TTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hc--CCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHH
Confidence 99999999999984 32 47899999999999987579999999999999999999999999999984
No 39
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=4.6e-34 Score=233.33 Aligned_cols=153 Identities=15% Similarity=0.192 Sum_probs=135.2
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|+|.+ ++++.+++.+||++|+++++++++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 599999999999999999999 6888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhhHHHHHHHHHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFCFLSAIWIYNAIIVY 193 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~~~~~~~~~~~~~~~ 193 (210)
+++++.+... .+ +.|||++++||+|||+++||+||.+||+|++.++++.|+|+|+++|++++ +..|..+..+..
T Consensus 82 ~~~~~~l~~~-~~-~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~L--e~~~~~~~s~ee 155 (201)
T 1iru_K 82 NFTRRNLADC-LR-SRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSIL--DRYYTPTISRER 155 (201)
T ss_dssp HHHHHHHHHH-HT-SSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHH--HHHCCTTCCHHH
T ss_pred HHHHHHHHHH-Hh-cCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHH--HhcccCCCCHHH
Confidence 9998765322 12 33799999999999986689999999999999999999999999999985 444444433333
No 40
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=7.2e-34 Score=238.05 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=137.7
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|+|.+ +.++.+++.+||++|+++++|++||+.+|++.+.+.++.++++|++++|++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 699999999999999999999 4556678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh---------HHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC---------FLSAIWI 186 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~---------~~~~~~~ 186 (210)
+++++++++| .+||++++||+|||++ ||+||++||+|++.++++.|+|+|+++|++++ +++|..+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDLN-GPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQEL 154 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeCC-CCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHH
Confidence 9999999765 4699999999999986 89999999999999999999999999999995 3444444
Q ss_pred HHHHHHHHHH
Q 028367 187 YNAIIVYILH 196 (210)
Q Consensus 187 ~~~~~~~~~~ 196 (210)
.-.++..++.
T Consensus 155 a~~al~~~~~ 164 (234)
T 3unf_H 155 LVEAITAGIL 164 (234)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 41
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.6e-33 Score=233.89 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=140.5
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|+|.+ +.++.+++.+||++|+++++++++|+.+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 599999999999999999999 5556678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh---------HHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC---------FLSAIWI 186 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~---------~~~~~~~ 186 (210)
+++++.+++| .|||++++||+|+|++ ||+||.+||+|++.++++.|+|+|+++|++++ +++|..+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKL 154 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeCC-CCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHH
Confidence 9999999765 4799999999999986 89999999999999999999999999999996 4556666
Q ss_pred HHHHHHHHHHh
Q 028367 187 YNAIIVYILHW 197 (210)
Q Consensus 187 ~~~~~~~~~~~ 197 (210)
.-.++..++.+
T Consensus 155 a~~al~~~~~~ 165 (222)
T 1ryp_I 155 ASDAIQAGIWN 165 (222)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 66666665544
No 42
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=9.3e-34 Score=232.16 Aligned_cols=159 Identities=15% Similarity=0.225 Sum_probs=137.3
Q ss_pred hccCceEEEEEcCCEEEEEEecCCCcc-eeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 028367 33 KAAGVTSIGVRGKDSVCVVTQKKVPDK-LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPV 111 (210)
Q Consensus 33 ~~gg~tvIgik~~dgVVlaad~~~~~~-li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~ 111 (210)
.+|+ |+|||+++||||||+|+|.+.+ ++.+++.+||++|++++++++||+.+|++.+.+.++.+++.|++++++++++
T Consensus 6 ~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 6 YNGG-AVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp SSCC-EEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred CCCC-eEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 5777 9999999999999999999944 4456689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeC-CCCcEEEEECCCCceeee-ceEEEccCCchhhhhh---------H
Q 028367 112 DVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGH-KVGGFFNKNSIYDTFC---------F 180 (210)
Q Consensus 112 ~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~-~~gp~Ly~vD~~Gs~~~~-~~~a~G~gs~~a~~~~---------~ 180 (210)
+.+++++++.+ |+++ ..||++++||+|||+ ++||+||.+||+|++.++ .++|+|+|+++|++++ +
T Consensus 85 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 85 YTLMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp HHHHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 99999999999 6553 459999999999996 458999999999999766 5699999999999996 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 028367 181 LSAIWIYNAIIVYILH 196 (210)
Q Consensus 181 ~~~~~~~~~~~~~~~~ 196 (210)
++|..+.-.++..++.
T Consensus 161 eea~~l~~~al~~~~~ 176 (205)
T 1iru_J 161 DHLFETISQAMLNAVD 176 (205)
T ss_dssp HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 43
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2.6e-33 Score=229.31 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=137.3
Q ss_pred HhccCceEEEEEcCCEEEEEEecCCCcc-eeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 028367 32 VKAAGVTSIGVRGKDSVCVVTQKKVPDK-LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMP 110 (210)
Q Consensus 32 v~~gg~tvIgik~~dgVVlaad~~~~~~-li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~ 110 (210)
+.+|+ |+|||+++||||||+|+|.+.+ ++.+++.+||++|+ +++++++|+.+|++.+.+.++.+++.|+++++++++
T Consensus 5 ~~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 82 (204)
T 1ryp_J 5 SINGG-IVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIE 82 (204)
T ss_dssp GSSCC-EEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCC-eEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 45777 9999999999999999999944 44566899999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeC-CCCcEEEEECCCCceeee-ceEEEccCCchhhhhh---------
Q 028367 111 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGH-KVGGFFNKNSIYDTFC--------- 179 (210)
Q Consensus 111 ~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~-~~gp~Ly~vD~~Gs~~~~-~~~a~G~gs~~a~~~~--------- 179 (210)
++.+++++++.+ |+++ ..||++++||+|||+ ++||+||.+||+|++.++ .++|+|+|+++|++++
T Consensus 83 v~~la~~l~~~~--y~~~--~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s 158 (204)
T 1ryp_J 83 PETFTQLVSSSL--YERR--FGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLE 158 (204)
T ss_dssp HHHHHHHHHHHH--HTTT--TSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcC
Confidence 999999999999 6654 349999999999996 458999999999999766 6699999999999996
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028367 180 FLSAIWIYNAIIVYILH 196 (210)
Q Consensus 180 ~~~~~~~~~~~~~~~~~ 196 (210)
+++|..+.-.++..++.
T Consensus 159 ~eea~~l~~~al~~~~~ 175 (204)
T 1ryp_J 159 PEDLFETISQALLNAAD 175 (204)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445554444444443
No 44
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=9.2e-33 Score=231.17 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=138.5
Q ss_pred ceEEEEEcCCEEEEEEecCCCc-ceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVPD-KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~~-~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|+|.+. .++.+++.+||++|+++++|++||+.+|++.+.+.++.+++.|++++|++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 5999999999999999999994 455567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeeceEEEccCCchhhhhh---------HHHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKVGGFFNKNSIYDTFC---------FLSAIWI 186 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~~~a~G~gs~~a~~~~---------~~~~~~~ 186 (210)
+++++.++.| .+||++++||+|||++ ||+||.+||+|++.++++.|+|+|++.|++++ +++|..+
T Consensus 81 ~~l~~~l~~~-----~~~~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (234)
T 1iru_I 81 RMLKQMLFRY-----RGYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNL 154 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEECSS-CEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTH
T ss_pred HHHHHHHHhc-----CCCCceeEEEEEEcCC-CCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHH
Confidence 9999999765 3699999999999986 89999999999999999999999999999986 4455555
Q ss_pred HHHHHHHHHHh
Q 028367 187 YNAIIVYILHW 197 (210)
Q Consensus 187 ~~~~~~~~~~~ 197 (210)
.-.++..++.+
T Consensus 155 a~~al~~a~~~ 165 (234)
T 1iru_I 155 VSEAIAAGIFN 165 (234)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 45
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.7e-32 Score=223.56 Aligned_cols=154 Identities=16% Similarity=0.111 Sum_probs=136.4
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeEcCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~la 115 (210)
||+|||+++||||||+|+|.+ +.++.+++.+||++|+++++++++|+.+|++.+.+.+|.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 699999999999999999999 5688889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeec-eEEEccCCchhhhhh---------HHHHHH
Q 028367 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-VGGFFNKNSIYDTFC---------FLSAIW 185 (210)
Q Consensus 116 ~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~-~~a~G~gs~~a~~~~---------~~~~~~ 185 (210)
+++++.+|++ .|||++++||+|||++++|+||+ |+|++..++ ++++|+|+++|++++ +++|..
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~ 153 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRR 153 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHH
Confidence 9999999765 46999999999999866899999 999987665 555799999999996 445555
Q ss_pred HHHHHHHHHHHh
Q 028367 186 IYNAIIVYILHW 197 (210)
Q Consensus 186 ~~~~~~~~~~~~ 197 (210)
+.-+++..++.+
T Consensus 154 la~~al~~~~~~ 165 (199)
T 3unf_N 154 FTTNAITLAMNR 165 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
No 46
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.96 E-value=6.7e-29 Score=198.10 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=116.2
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeE-cCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~l 114 (210)
||+|||+++||||||+|+|.+ ++++.+++.+||++| +++++++++|+.+|++.+.+.+|.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 599999999999999999999 688888999999999 99999999999999999999999999998744 14444
Q ss_pred HHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeec--eEEEccCCchhhhhhHHHHHHH
Q 028367 115 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK--VGGFFNKNSIYDTFCFLSAIWI 186 (210)
Q Consensus 115 a~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~--~~a~G~gs~~a~~~~~~~~~~~ 186 (210)
++. .+.++++...|||+++++++ | ||+||.+||+|++.+++ +.|+|+|+++|++++ +..|.
T Consensus 76 ~~l----~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~l--e~~~~ 138 (171)
T 1m4y_A 76 VEL----AKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAA--KALLR 138 (171)
T ss_dssp HHH----HHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHH--HHHHH
T ss_pred HHH----HHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHH--HHhcc
Confidence 444 33444555678899999998 4 79999999999999988 999999999999994 56665
No 47
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.96 E-value=3.8e-29 Score=201.41 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=123.0
Q ss_pred hccCceEEEEEcCCEEEEEEecCCC-cce-eecCCcceeeeE-cCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028367 33 KAAGVTSIGVRGKDSVCVVTQKKVP-DKL-LDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 109 (210)
Q Consensus 33 ~~gg~tvIgik~~dgVVlaad~~~~-~~l-i~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i 109 (210)
.+|+ |+|||+++||||||+|+|.+ +.+ +.+++.+||++| +++++++++|..+|++.|.++++.+++.|+ |
T Consensus 3 ~~Gt-Tivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--- 75 (180)
T 2z3b_A 3 FHAT-TIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--- 75 (180)
T ss_dssp BCCC-CEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T---
T ss_pred CCCe-EEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C---
Confidence 4566 99999999999999999999 677 889999999999 999999999999999999999999999988 3
Q ss_pred CHHHHHHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceee--eceEEEccCCchhhhhhHHHHHHHH
Q 028367 110 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG--HKVGGFFNKNSIYDTFCFLSAIWIY 187 (210)
Q Consensus 110 ~~~~la~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~--~~~~a~G~gs~~a~~~~~~~~~~~~ 187 (210)
+ +.+.++++.+.+++....|||++++||+ | +|+||.+||+|++.+ +++.|+|+|+++|+++ ++..|..
T Consensus 76 ~---~~~~~~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~--le~~~~~ 145 (180)
T 2z3b_A 76 N---LKRAAVELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAA--GRALKKH 145 (180)
T ss_dssp C---HHHHHHHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHH--HHHHHHH
T ss_pred C---hHHHHHHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHH--HHHhhhc
Confidence 2 3334444555566677889999999999 3 799999999999998 4999999999999999 4667765
Q ss_pred ---HHHHHH
Q 028367 188 ---NAIIVY 193 (210)
Q Consensus 188 ---~~~~~~ 193 (210)
+.....
T Consensus 146 ~~~~mt~ee 154 (180)
T 2z3b_A 146 AGESMSASE 154 (180)
T ss_dssp HGGGCCHHH
T ss_pred cCCCCCHHH
Confidence 445444
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.96 E-value=2.8e-28 Score=195.11 Aligned_cols=134 Identities=16% Similarity=0.078 Sum_probs=115.7
Q ss_pred ceEEEEEcCCEEEEEEecCCC-cceeecCCcceeeeE-cCcEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 028367 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (210)
Q Consensus 37 ~tvIgik~~dgVVlaad~~~~-~~li~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~~~~l 114 (210)
||+|||+++||||||+|+|.+ +.++.+++.+||++| +++++++++|+.+|++.|.+++|.+++.|+. + +
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~---~ 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------H---L 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------C---H
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------c---H
Confidence 599999999999999999999 668888999999999 9999999999999999999999999999885 3 3
Q ss_pred HHHHHHHHHHhhhhcCcccceEEEEEEEEeCCCCcEEEEECCCCceeeec---eEEEccCCchhhhhhHHHHHHH
Q 028367 115 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK---VGGFFNKNSIYDTFCFLSAIWI 186 (210)
Q Consensus 115 a~~ls~~~~~~t~~~~~rP~gv~~ivaG~D~~~gp~Ly~vD~~Gs~~~~~---~~a~G~gs~~a~~~~~~~~~~~ 186 (210)
.+.++.+.+.+++++..||+ +++++|+| +|+||++||+|++.+++ +.|+|+|+++|++++ +..|.
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~l--e~~~~ 139 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAA--RALVE 139 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHH--HHhcc
Confidence 44444555555666677775 57777886 79999999999999988 999999999999984 66665
No 49
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=38.07 E-value=20 Score=27.56 Aligned_cols=31 Identities=10% Similarity=-0.043 Sum_probs=28.6
Q ss_pred cceeCCCCccc-hhhhHHHHHhccCceEEEEEc
Q 028367 13 ITIFSPEGRLF-QVEYAFKAVKAAGVTSIGVRG 44 (210)
Q Consensus 13 ~t~Fsp~Grl~-Qveya~kav~~gg~tvIgik~ 44 (210)
+-+||+.||-- .+|-|+++-++|- ++|+|+.
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~-~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHT-PYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTC-CEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCC-cEEEEeC
Confidence 66899999988 9999999999998 9999988
No 50
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=31.79 E-value=28 Score=27.59 Aligned_cols=31 Identities=10% Similarity=-0.045 Sum_probs=26.6
Q ss_pred ceeCCCCccchhhhHHHHHhccCceEEEEEcC
Q 028367 14 TIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (210)
Q Consensus 14 t~Fsp~Grl~Qveya~kav~~gg~tvIgik~~ 45 (210)
|.||+||..-.-|++.+|.++|- ..|+++=.
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl-~~iaiTDH 38 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGL-KGVVFTDH 38 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTC-SEEEEEEE
T ss_pred cCCCCCCCCCHHHHHHHHHHcCC-CEEEEcCC
Confidence 57899999998899999999987 88888654
No 51
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=25.19 E-value=21 Score=26.09 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=14.2
Q ss_pred CCCCcccceeCCCCccch
Q 028367 7 GGYDRHITIFSPEGRLFQ 24 (210)
Q Consensus 7 ~~yd~~~t~Fsp~Grl~Q 24 (210)
++-|...|.|+|+||+.-
T Consensus 53 ~gm~h~vTfF~~~Grl~~ 70 (138)
T 3rj2_X 53 MFMRHRVTFFNATGRYIT 70 (138)
T ss_dssp TTCEEEEEEECTTSCEEE
T ss_pred CcceeEEEEEcCCCcEEE
Confidence 445778999999998763
Done!