BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028368
MMLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLN
HARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPL
QIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFL
SFIGYPYVQLRQKYFAHQSVNAVKKHLTAS

High Scoring Gene Products

Symbol, full name Information P value
AT2G17695 protein from Arabidopsis thaliana 3.0e-78
DDB_G0271742
UPF0548 family protein
gene from Dictyostelium discoideum 1.4e-18
Rv2616
Conserved protein
protein from Mycobacterium tuberculosis 3.2e-10

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028368
        (210 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1005716645 - symbol:AT2G17695 "AT2G17695" spec...   787  3.0e-78   1
DICTYBASE|DDB_G0271742 - symbol:DDB_G0271742 "UPF0548 fam...   224  1.4e-18   1
UNIPROTKB|O06198 - symbol:Rv2616 "Conserved protein" spec...   145  3.2e-10   1


>TAIR|locus:1005716645 [details] [associations]
            symbol:AT2G17695 "AT2G17695" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009941 EMBL:AK118331
            EMBL:BT005572 IPI:IPI00543664 RefSeq:NP_001118341.1
            RefSeq:NP_001189543.1 RefSeq:NP_849965.1 UniGene:At.47048
            PaxDb:Q8GXB1 PRIDE:Q8GXB1 EnsemblPlants:AT2G17695.1
            EnsemblPlants:AT2G17695.2 EnsemblPlants:AT2G17695.3 GeneID:816277
            KEGG:ath:AT2G17695 TAIR:At2g17695 eggNOG:COG4762
            HOGENOM:HOG000237942 InParanoid:Q8GXB1 OMA:FLINHAR PhylomeDB:Q8GXB1
            ProtClustDB:CLSN2690753 Genevestigator:Q8GXB1 InterPro:IPR018960
            Pfam:PF09348 Uniprot:Q8GXB1
        Length = 205

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 139/205 (67%), Positives = 171/205 (83%)

Query:     6 MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
             MVFLSWGRP+ ++Q+  I+K+G FNYD KY+G +++ +A LKED  + KDGFL+NHARVL
Sbjct:     1 MVFLSWGRPSSEQQQQVINKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVL 60

Query:    66 VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
             VGSG E+YEKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct:    61 VGSGRESYEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYV 120

Query:   126 NESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGY 185
             +ES + +K  A FG+GSGTLQGHLLAGEE+FSIELD N +VWYEI SFSKPA FLSF+GY
Sbjct:   121 DESRKSRKGPAHFGYGSGTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGY 180

Query:   186 PYVQLRQKYFAHQSVNAVKKHLTAS 210
             PYV+LRQK+FA  S  AV KH+ AS
Sbjct:   181 PYVKLRQKHFARHSSEAVLKHVNAS 205


>DICTYBASE|DDB_G0271742 [details] [associations]
            symbol:DDB_G0271742 "UPF0548 family protein"
            species:44689 "Dictyostelium discoideum" [GO:0008150
            "biological_process" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
            dictyBase:DDB_G0271742 EMBL:AAFI02000006 eggNOG:COG4762 OMA:FLINHAR
            InterPro:IPR018960 Pfam:PF09348 RefSeq:XP_645536.1
            EnsemblProtists:DDB0305139 GeneID:8618165 KEGG:ddi:DDB_G0271742
            Uniprot:Q86JL6
        Length = 216

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 53/157 (33%), Positives = 85/157 (54%)

Query:    57 FLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWA-FVDPKTPIQNGVKFCVCVKEFLPW 115
             F ++  ++ +G+G+E ++K   ALK W+HF L+W  F    TPI  G    +  K+   W
Sbjct:    50 FDVDQVKIQLGTGVECFQKAVAALKQWKHFDLDWVDFYFKNTPIAVGETVGILSKQVGFW 109

Query:   116 VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIE-------LDDNNQVWY 168
             +    +I Y+ +   ++  +  FG+  GTL+ H+  GEERF IE         D   V+Y
Sbjct:   110 ILSFARINYLYDG-DQEDGSIKFGYSYGTLKDHVEKGEERFVIEWVRDPDGAPDKGAVYY 168

Query:   169 EIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKK 205
             E++SFS+P+ +LS +GYP  +  Q  F   S N + K
Sbjct:   169 EMLSFSEPSYWLSQLGYPVTRYFQNKFVVDSCNQMLK 205


>UNIPROTKB|O06198 [details] [associations]
            symbol:Rv2616 "Conserved protein" species:1773
            "Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
            evidence=IDA] GO:GO:0005886 GenomeReviews:AL123456_GR EMBL:BX842580
            HOGENOM:HOG000237942 InterPro:IPR018960 Pfam:PF09348 EMBL:AL123456
            PIR:G70571 RefSeq:NP_217132.1 RefSeq:YP_006516059.1
            EnsemblBacteria:EBMYCT00000003906 GeneID:13319338 GeneID:887289
            KEGG:mtu:Rv2616 KEGG:mtv:RVBD_2616 PATRIC:18154417
            TubercuList:Rv2616 OMA:HPERGEE ProtClustDB:CLSK791953
            InterPro:IPR014457 PIRSF:PIRSF010260 Uniprot:O06198
        Length = 166

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 46/150 (30%), Positives = 77/150 (51%)

Query:    60 NHARVL--VGSGLETYEKGKTALKTW---RHFGLNWAFVDPKTPIQNGVKFCVCVKEFLP 114
             NH  V   +G+G + +E+   A+  W   R+ GL       +T + + V   V V   + 
Sbjct:    29 NHLDVSTQIGTGRQRFEQAADAVMHWGMQRNAGLR-VRASSETAVVSAV---VLVG--IA 82

Query:   115 WVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWY-EIVSF 173
             ++  P ++VYV +    +      GFG GTL GH ++GEERF++  D    V + E++SF
Sbjct:    83 FLRAPCRVVYVIDEPDVR------GFGYGTLPGHPVSGEERFAVRCDPMTSVVFAEVLSF 136

Query:   174 SKPADFLSFIGYPYVQLRQKYFAHQSVNAV 203
             S+PA + S    P   + Q++ A + + AV
Sbjct:   137 SRPATWASKAAGPLGAVTQRFIAQRYLRAV 166


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      210       210   0.00080  112 3  11 22  0.49    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  193 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.27u 0.08s 19.35t   Elapsed:  00:00:01
  Total cpu time:  19.27u 0.08s 19.35t   Elapsed:  00:00:01
  Start:  Fri May 10 16:42:43 2013   End:  Fri May 10 16:42:44 2013

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