BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028368
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GXB1|U548_ARATH UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2
SV=1
Length = 205
Score = 312 bits (799), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 139/205 (67%), Positives = 171/205 (83%)
Query: 6 MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
MVFLSWGRP+ ++Q+ I+K+G FNYD KY+G +++ +A LKED + KDGFL+NHARVL
Sbjct: 1 MVFLSWGRPSSEQQQQVINKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVL 60
Query: 66 VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
VGSG E+YEKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct: 61 VGSGRESYEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYV 120
Query: 126 NESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGY 185
+ES + +K A FG+GSGTLQGHLLAGEE+FSIELD N +VWYEI SFSKPA FLSF+GY
Sbjct: 121 DESRKSRKGPAHFGYGSGTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGY 180
Query: 186 PYVQLRQKYFAHQSVNAVKKHLTAS 210
PYV+LRQK+FA S AV KH+ AS
Sbjct: 181 PYVKLRQKHFARHSSEAVLKHVNAS 205
>sp|Q86JL6|U548_DICDI UPF0548 protein OS=Dictyostelium discoideum GN=DDB_G0271742 PE=3
SV=1
Length = 216
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 9/162 (5%)
Query: 57 FLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWA-FVDPKTPIQNGVKFCVCVKEFLPW 115
F ++ ++ +G+G+E ++K ALK W+HF L+W F TPI G + K+ W
Sbjct: 50 FDVDQVKIQLGTGVECFQKAVAALKQWKHFDLDWVDFYFKNTPIAVGETVGILSKQVGFW 109
Query: 116 VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIE-------LDDNNQVWY 168
+ +I Y+ + ++ + FG+ GTL+ H+ GEERF IE D V+Y
Sbjct: 110 ILSFARINYLYDG-DQEDGSIKFGYSYGTLKDHVEKGEERFVIEWVRDPDGAPDKGAVYY 168
Query: 169 EIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS 210
E++SFS+P+ +LS +GYP + Q F S N + K + ++
Sbjct: 169 EMLSFSEPSYWLSQLGYPVTRYFQNKFVVDSCNQMLKAVGSN 210
>sp|Q9RST8|Y2035_DEIRA UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_2035 PE=3 SV=1
Length = 198
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 70/154 (45%), Gaps = 7/154 (4%)
Query: 51 GLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFV---DPKTPI-QNGVKFC 106
G + D RV VG G +E+ K AL+ + F +W + TP+ + G
Sbjct: 35 GRTPDWARSGRHRVRVGEGEACWERAKAALRGGQMF-QDWVLRPHGEASTPLSRQGATVV 93
Query: 107 VCVKEFLPW--VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNN 164
+ V+ F PW L + N + +GFG GTL GHL+ GEERF +E D
Sbjct: 94 LLVRHFGPWGRRKWGLYSLMTNRVLYLVDEPDRYGFGYGTLPGHLVRGEERFLLERDAGG 153
Query: 165 QVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQ 198
VW+++ +FS+ A S P V Q+ A
Sbjct: 154 AVWFDLTTFSRAALPFSRFAQPLVGAAQRRGARH 187
>sp|Q8EP46|Y2271_OCEIH UPF0249 protein OB2271 OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=OB2271 PE=3
SV=1
Length = 230
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 7 VFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKED-----QGLSKDGFLLNH 61
+ L+WGRP + + + +G F Y + Y+ +A ++++ + K G LNH
Sbjct: 60 LVLTWGRPISNDVASLVQSNGKFRYTSSYREMDPPSLADVEKEWRAQIEEFKKTGLTLNH 119
>sp|Q9N0A4|PGES2_MACFA Prostaglandin E synthase 2 OS=Macaca fascicularis GN=PTGES2 PE=1
SV=1
Length = 377
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 105 FCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNN 164
FC V+ FL + LP Q+V VN +R A F S L+A E S +L+D++
Sbjct: 112 FCSKVRAFLDFHALPYQVVEVNPVLR-----AEIKFSSYRKVPILVAQEGESSQQLNDSS 166
Query: 165 QVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLT 208
V S +L G P ++ Y A ++VN K +T
Sbjct: 167 ------VIISALKTYL-VSGQPLEEIITYYPAMKAVNDQGKEVT 203
>sp|P10078|ZFP28_MOUSE Zinc finger protein 28 OS=Mus musculus GN=Zfp28 PE=2 SV=3
Length = 825
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 41 KPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQ 100
KP C + + + G L H RV G Y+KG+ A + HF + K+P
Sbjct: 740 KPYECKECRKTFIQIGHLNQHKRVHTGERTYNYKKGRRAFRQTAHFAHHQQIHSGKSPAH 799
Query: 101 NGV 103
+ +
Sbjct: 800 HSL 802
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,576,859
Number of Sequences: 539616
Number of extensions: 3491517
Number of successful extensions: 6709
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6703
Number of HSP's gapped (non-prelim): 7
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)