BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028370
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 68/101 (67%), Gaps = 6/101 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TDD G TPLH+ A G +++V+ LL G DVN + S G+TPLHLAA GHLE+++V
Sbjct: 35 TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS----DSAGITPLHLAAYDGHLEIVEV 90
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
LL+ GAD++A + GWTPLH AA + E V L+++GA
Sbjct: 91 LLKHGADVNAYDR--AGWTPLHLAALSGQLEIVEVLLKHGA 129
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 12/99 (12%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNV---AAWGPKSKGVTPLHLAAQGGHLEV 87
+D G TPLH+ A G +++V+ LL G DVN A W TPLHLAA G LE+
Sbjct: 68 SDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW-------TPLHLAALSGQLEI 120
Query: 88 MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 126
++VLL+ GAD++A+ A G T + + +++ L
Sbjct: 121 VEVLLKHGADVNAQD--ALGLTAFDISINQGQEDLAEIL 157
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G TPLH+ AR G +++VK LL+ G DVN G TPLHLAA+ GHLEV+ +L
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNA----KDKNGRTPLHLAARNGHLEVVKLL 87
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 132
LE GAD++A+ K G TPLH AA+ E V+ L+E GA+
Sbjct: 88 LEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGAY 126
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 71/117 (60%), Gaps = 12/117 (10%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G TPLH+ AR G +++VK LL+ G DVN G TPLHLAA+ GHLEV+ +LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNA----KDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 95 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYC 149
GAD++A+ K G TPLH AA+ E V+ L+E GA D+N D PLH
Sbjct: 58 GADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLA 108
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 65/98 (66%), Gaps = 6/98 (6%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G TPLH+ AR G +++VK LL+ G DVN G TPLHLAA+ GHLEV+ +LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNA----KDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 95 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 132
GAD++A+ K G TPLH AA+ E V+ L+E GA+
Sbjct: 58 GADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 8/81 (9%)
Query: 71 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 130
G TPLHLAA+ GHLEV+ +LLE GAD++A+ K G TPLH AA+ E V+ L+E G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAG 58
Query: 131 AFLPDDIN--DSRFNPPLHYC 149
A D+N D PLH
Sbjct: 59 A----DVNAKDKNGRTPLHLA 75
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G TPLH+ AR G +++VK LL+ G DVN G TPLHLAA+ GHLEV+ +L
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNA----KDKNGRTPLHLAARNGHLEVVKLL 87
Query: 92 LERGA 96
LE GA
Sbjct: 88 LEAGA 92
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 67/100 (67%), Gaps = 6/100 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D GWTPLH+ A G +++V+ LL G DVN S GVTPLHLAA+ GHLE+++VL
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA----KDSLGVTPLHLAARRGHLEIVEVL 99
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
L+ GAD++A + G+TPLH AAK E V L++NGA
Sbjct: 100 LKNGADVNASD--SHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 52/72 (72%), Gaps = 4/72 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G TPLH+ AR+G +++V+ LL G DVN + S G TPLHLAA+ GHLE+++VL
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS----DSHGFTPLHLAAKRGHLEIVEVL 132
Query: 92 LERGADIDARTK 103
L+ GAD++A+ K
Sbjct: 133 LKNGADVNAQDK 144
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 63/110 (57%), Gaps = 12/110 (10%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN + G TPLHLAA GHLE+++VLL+ GAD++A
Sbjct: 22 ARAGQDDEVRILMANGADVNARDF----TGWTPLHLAAHFGHLEIVEVLLKNGADVNA-- 75
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCP 150
K + G TPLH AA+ E V L++NGA D+N DS PLH
Sbjct: 76 KDSLGVTPLHLAARRGHLEIVEVLLKNGA----DVNASDSHGFTPLHLAA 121
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVN 62
+D G+TPLH+ A++G +++V+ LL G DVN
Sbjct: 109 SDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 10/107 (9%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G+TPLH+ AR+G +++V+ LL G DVN G TPLHLAA+ GHLE+++VL
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNA----KDKDGYTPLHLAAREGHLEIVEVL 87
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
L+ GAD++A+ K G+TPLH AA+E E V L++ GA D+N
Sbjct: 88 LKAGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGA----DVN 128
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 60/95 (63%), Gaps = 6/95 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G+TPLH+ AR+G +++V+ LL G DVN G TPLHLAA+ GHLE+++VL
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNA----KDKDGYTPLHLAAREGHLEIVEVL 120
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 126
L+ GAD++A+ K G TP A +E ++ L
Sbjct: 121 LKAGADVNAQDK--FGKTPFDLAIREGHEDIAEVL 153
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 63/109 (57%), Gaps = 12/109 (11%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN G TPLHLAA+ GHLE+++VLL+ GAD++A+
Sbjct: 10 ARAGQDDEVRILMANGADVNA----KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYC 149
K G+TPLH AA+E E V L++ GA D+N D PLH
Sbjct: 66 KD--GYTPLHLAAREGHLEIVEVLLKAGA----DVNAKDKDGYTPLHLA 108
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 10/107 (9%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G+TPLH+ AR+G +++V+ LL G DVN G TPLHLAA+ GHLE+++VL
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNA----KDKDGYTPLHLAAREGHLEIVEVL 87
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
L+ GAD++A+ K G+TPLH AA+E E V L++ GA D+N
Sbjct: 88 LKAGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGA----DVN 128
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G+TPLH+ AR+G +++V+ LL G DVN G TPLHLAA+ GHLE+++VL
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNA----KDKDGYTPLHLAAREGHLEIVEVL 120
Query: 92 LERGADIDARTKGACGWTPLHTA 114
L+ GAD++A+ K G TP A
Sbjct: 121 LKAGADVNAQDK--FGKTPFDLA 141
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 63/109 (57%), Gaps = 12/109 (11%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN G TPLHLAA+ GHLE+++VLL+ GAD++A+
Sbjct: 10 ARAGQDDEVRILMANGADVNA----KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYC 149
K G+TPLH AA+E E V L++ GA D+N D PLH
Sbjct: 66 KD--GYTPLHLAAREGHLEIVEVLLKAGA----DVNAKDKDGYTPLHLA 108
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 10/107 (9%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G+TPLH+ AR+G +++V+ LL G DVN G TPLHLAA+ GHLE+++VL
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNA----KDKDGYTPLHLAAREGHLEIVEVL 99
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
L+ GAD++A+ K G+TPLH AA+E E V L++ GA D+N
Sbjct: 100 LKAGADVNAKDK--DGYTPLHLAAREGHLEIVEVLLKAGA----DVN 140
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 63/109 (57%), Gaps = 12/109 (11%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN G TPLHLAA+ GHLE+++VLL+ GAD++A+
Sbjct: 22 ARAGQDDEVRILMANGADVNA----KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYC 149
K G+TPLH AA+E E V L++ GA D+N D PLH
Sbjct: 78 K--DGYTPLHLAAREGHLEIVEVLLKAGA----DVNAKDKDGYTPLHLA 120
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G+TPLH+ AR+G +++V+ LL G DVN G TPLHLAA+ GHLE+++VL
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNA----KDKDGYTPLHLAAREGHLEIVEVL 132
Query: 92 LERGADIDARTK 103
L+ GAD++A+ K
Sbjct: 133 LKAGADVNAQDK 144
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD+ G+TPLH+ A G +++V+ LL G DVN + G+TPLHLAA GHLE+++V
Sbjct: 43 TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL----TGITPLHLAAATGHLEIVEV 98
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
LL+ GAD++A G TPLH AAK E V L+++GA
Sbjct: 99 LLKHGADVNAYDN--DGHTPLHLAAKYGHLEIVEVLLKHGA 137
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
+D G TPLH+ A G +++V+ LL G DVN A+ + G TPLHLAA+ GHLE+++V
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKHGADVN--AY--DNDGHTPLHLAAKYGHLEIVEV 131
Query: 91 LLERGADIDARTK 103
LL+ GAD++A+ K
Sbjct: 132 LLKHGADVNAQDK 144
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 10/132 (7%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
+D G TPLH A++G ++VK L+ +G DVN S G TPLH AA+ GH E++ +
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA----KDSDGRTPLHYAAKEGHKEIVKL 88
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150
L+ +GAD++A K + G TPLH AAKE KE V+ LI GA + + +DS PL
Sbjct: 89 LISKGADVNA--KDSDGRTPLHYAAKEGHKEIVKLLISKGADV--NTSDSDGRTPLDLAR 144
Query: 151 SLEWAYEEMMRF 162
E EE+++
Sbjct: 145 --EHGNEEIVKL 154
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 14/122 (11%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
A G+ VK L++ G DVN + S G TPLH AA+ GH E++ +L+ +GAD++A
Sbjct: 12 AENGNKDRVKDLIENGADVNAS----DSDGRTPLHYAAKEGHKEIVKLLISKGADVNA-- 65
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMM 160
K + G TPLH AAKE KE V+ LI GA D+N DS PLHY + ++E++
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLISKGA----DVNAKDSDGRTPLHYAA--KEGHKEIV 119
Query: 161 RF 162
+
Sbjct: 120 KL 121
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 10/86 (11%)
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
AA+ G+ + + L+E GAD++A + G TPLH AAKE KE V+ LI GA D+N
Sbjct: 11 AAENGNKDRVKDLIENGADVNASD--SDGRTPLHYAAKEGHKEIVKLLISKGA----DVN 64
Query: 139 --DSRFNPPLHYCPSLEWAYEEMMRF 162
DS PLHY + ++E+++
Sbjct: 65 AKDSDGRTPLHYAA--KEGHKEIVKL 88
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 65/101 (64%), Gaps = 6/101 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
+D GWTPLH+ A G +++V+ LL G DVN S GVTPLHLAA GHLEV++V
Sbjct: 43 SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA----DDSLGVTPLHLAADRGHLEVVEV 98
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
LL+ GAD++A G+TPLH AA E V L+++GA
Sbjct: 99 LLKNGADVNANDHN--GFTPLHLAANIGHLEIVEVLLKHGA 137
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 5/76 (6%)
Query: 29 IDTDDR-GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
++ DD G TPLH+ A +G +++V+ LL G DVN G TPLHLAA GHLE+
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNA----NDHNGFTPLHLAANIGHLEI 128
Query: 88 MDVLLERGADIDARTK 103
++VLL+ GAD++A+ K
Sbjct: 129 VEVLLKHGADVNAQDK 144
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
AA+ G + + +L+ GAD++A GWTPLH AA E V L++NGA + D
Sbjct: 21 AARAGQDDEVRILMANGADVNASDH--VGWTPLHLAAYFGHLEIVEVLLKNGADVNAD-- 76
Query: 139 DSRFNPPLHYCP 150
DS PLH
Sbjct: 77 DSLGVTPLHLAA 88
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 75/132 (56%), Gaps = 10/132 (7%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
+D G TPLH A G ++VK L+ +G DVN S G TPLH AA+ GH EV+ +
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLISKGADVNA----KDSDGRTPLHHAAENGHKEVVKL 88
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150
L+ +GAD++A K + G TPLH AA+ KE V+ LI GA + + +DS PL
Sbjct: 89 LISKGADVNA--KDSDGRTPLHHAAENGHKEVVKLLISKGADV--NTSDSDGRTPLDLAR 144
Query: 151 SLEWAYEEMMRF 162
E EE+++
Sbjct: 145 --EHGNEEVVKL 154
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 14/122 (11%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
A G+ VK L++ G DVN + S G TPLH AA+ GH EV+ +L+ +GAD++A
Sbjct: 12 AENGNKDRVKDLIENGADVNAS----DSDGRTPLHHAAENGHKEVVKLLISKGADVNA-- 65
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMM 160
K + G TPLH AA+ KE V+ LI GA D+N DS PLH+ E ++E++
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLISKGA----DVNAKDSDGRTPLHHAA--ENGHKEVV 119
Query: 161 RF 162
+
Sbjct: 120 KL 121
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G TPLH A G ++VK L+ +G DVN S G TPLH AA+ GH EV+ +L
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADVNA----KDSDGRTPLHHAAENGHKEVVKLL 122
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
+ +GAD++ T + G TPL A + +E V+ L + G +L
Sbjct: 123 ISKGADVN--TSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
AA+ G+ + + L+E GAD++A + G TPLH AA+ KE V+ LI GA D+N
Sbjct: 11 AAENGNKDRVKDLIENGADVNASD--SDGRTPLHHAAENGHKEVVKLLISKGA----DVN 64
Query: 139 --DSRFNPPLHYCPSLEWAYEEMMRF 162
DS PLH+ E ++E+++
Sbjct: 65 AKDSDGRTPLHHAA--ENGHKEVVKL 88
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 67/101 (66%), Gaps = 6/101 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD G TPLH+ A+ G +++V+ LL G DVN AW + G TPLHLAA GHLE+++V
Sbjct: 43 TDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN--AW--DNYGATPLHLAADNGHLEIVEV 98
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
LL+ GAD++A K G+TPLH AA + E V L++ GA
Sbjct: 99 LLKHGADVNA--KDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 4/72 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D+ G TPLH+ A G +++V+ LL G DVN + +G TPLHLAA GHLE+++VL
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY----EGFTPLHLAAYDGHLEIVEVL 132
Query: 92 LERGADIDARTK 103
L+ GAD++A+ K
Sbjct: 133 LKYGADVNAQDK 144
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 63/100 (63%), Gaps = 6/100 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
DD G TPLH+ A KG +++V+ LL G DVN A G TPLHLAA GHLE+++VL
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA----DKMGDTPLHLAALYGHLEIVEVL 99
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
L+ GAD++A G+TPLH AA E V L++ GA
Sbjct: 100 LKNGADVNATD--TYGFTPLHLAADAGHLEIVEVLLKYGA 137
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 12/110 (10%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN G TPLHLAA GHLE+++VLL+ GAD++A
Sbjct: 22 ARAGQDDEVRILMANGADVNA----EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCP 150
K G TPLH AA E V L++NGA D+N D+ PLH
Sbjct: 78 K--MGDTPLHLAALYGHLEIVEVLLKNGA----DVNATDTYGFTPLHLAA 121
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
D G TPLH+ A G +++V+ LL G DVN + G TPLHLAA GHLE+++V
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLLKNGADVNA----TDTYGFTPLHLAADAGHLEIVEV 131
Query: 91 LLERGADIDARTK 103
LL+ GAD++A+ K
Sbjct: 132 LLKYGADVNAQDK 144
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 74/132 (56%), Gaps = 10/132 (7%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
+D G TPLH+ A G ++VK LL +G D N S G TPLHLAA+ GH EV+ +
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK----DSDGKTPLHLAAENGHKEVVKL 88
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150
LL +GAD +A K + G TPLH AA+ KE V+ L+ GA + +DS PL
Sbjct: 89 LLSQGADPNA--KDSDGKTPLHLAAENGHKEVVKLLLSQGA--DPNTSDSDGRTPLDLA- 143
Query: 151 SLEWAYEEMMRF 162
E EE+++
Sbjct: 144 -REHGNEEVVKL 154
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 68/120 (56%), Gaps = 10/120 (8%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
A G+ VK LL+ G DVN + S G TPLHLAA+ GH EV+ +LL +GAD +A
Sbjct: 12 AENGNKDRVKDLLENGADVNAS----DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA-- 65
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 162
K + G TPLH AA+ KE V+ L+ GA + DS PLH E ++E+++
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGA--DPNAKDSDGKTPLHLAA--ENGHKEVVKL 121
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G TPLH+ A G ++VK LL +G D N S G TPLHLAA+ GH EV+ +L
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK----DSDGKTPLHLAAENGHKEVVKLL 122
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
L +GA D T + G TPL A + +E V+ L + G +L
Sbjct: 123 LSQGA--DPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
AA+ G+ + + LLE GAD++A + G TPLH AA+ KE V+ L+ GA +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASD--SDGKTPLHLAAENGHKEVVKLLLSQGA--DPNAK 66
Query: 139 DSRFNPPLHYCPSLEWAYEEMMRF 162
DS PLH E ++E+++
Sbjct: 67 DSDGKTPLHLAA--ENGHKEVVKL 88
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 62/101 (61%), Gaps = 6/101 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
D GWTPLH+ A G +++V+ LL G DVN + G TPLHLAA GHLE+++V
Sbjct: 43 ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA----YDTLGSTPLHLAAHFGHLEIVEV 98
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
LL+ GAD++A+ G TPLH AA E V L++ GA
Sbjct: 99 LLKNGADVNAKDDN--GITPLHLAANRGHLEIVEVLLKYGA 137
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G TPLH+ A G +++V+ LL G DVN G+TPLHLAA GHLE+++VL
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNA----KDDNGITPLHLAANRGHLEIVEVL 132
Query: 92 LERGADIDARTK 103
L+ GAD++A+ K
Sbjct: 133 LKYGADVNAQDK 144
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN A G TPLHLAA GHLE+++VLL+ GAD++A
Sbjct: 22 ARAGRDDEVRILMANGADVNAA----DVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPS 151
G TPLH AA E V L++NGA D+N D PLH +
Sbjct: 78 --TLGSTPLHLAAHFGHLEIVEVLLKNGA----DVNAKDDNGITPLHLAAN 122
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
D+ G TPLH+ A G +++V+ LL G DV+ A G TPLHLAA GHLE+++V
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA----DVYGFTPLHLAAMTGHLEIVEV 98
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150
LL+ GAD++A G TPLH AA E E V L++ GA D+N +
Sbjct: 99 LLKYGADVNAFDM--TGSTPLHLAADEGHLEIVEVLLKYGA----DVNAQDKFGKTAFDI 152
Query: 151 SLEWAYEEMMRFQR 164
S++ E++ + R
Sbjct: 153 SIDNGNEDLAKSCR 166
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 61/107 (57%), Gaps = 12/107 (11%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN + G+TPLHLAA GHLE+++VLL+ GAD+DA
Sbjct: 22 ARAGQDDEVRILIANGADVNAV----DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
G+TPLH AA E V L++ GA D+N D + PLH
Sbjct: 78 --VYGFTPLHLAAMTGHLEIVEVLLKYGA----DVNAFDMTGSTPLH 118
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 61/100 (61%), Gaps = 6/100 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D GWTPLH+ A G +++V+ LL G DVN G+TPL LAA GHLE+++VL
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV----DHAGMTPLRLAALFGHLEIVEVL 99
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
L+ GAD++A G TPLH AA E V L++NGA
Sbjct: 100 LKNGADVNANDM--EGHTPLHLAAMFGHLEIVEVLLKNGA 137
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN + G TPLHLAA GHLE+++VLL+ GAD++A
Sbjct: 22 ARAGRDDEVRILMANGADVNA----EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150
G TPL AA E V L++NGA + + ND + PLH
Sbjct: 78 H--AGMTPLRLAALFGHLEIVEVLLKNGADV--NANDMEGHTPLHLAA 121
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
D G TPL + A G +++V+ LL G DVN +G TPLHLAA GHLE+++V
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA----NDMEGHTPLHLAAMFGHLEIVEV 131
Query: 91 LLERGADIDARTK 103
LL+ GAD++A+ K
Sbjct: 132 LLKNGADVNAQDK 144
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 64/100 (64%), Gaps = 6/100 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
DD+G TPLH+ A G ++V+ LL G DVN + G TPLHLAA GHLE+++VL
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNA----RDTDGWTPLHLAADNGHLEIVEVL 99
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
L+ GAD++A+ A G TPLH AA E V L+++GA
Sbjct: 100 LKYGADVNAQD--AYGLTPLHLAADRGHLEIVEVLLKHGA 137
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 6/74 (8%)
Query: 30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
DTD GWTPLH+ A G +++V+ LL G DVN + G+TPLHLAA GHLE+++
Sbjct: 77 DTD--GWTPLHLAADNGHLEIVEVLLKYGADVNA----QDAYGLTPLHLAADRGHLEIVE 130
Query: 90 VLLERGADIDARTK 103
VLL+ GAD++A+ K
Sbjct: 131 VLLKHGADVNAQDK 144
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 60/109 (55%), Gaps = 12/109 (11%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN +G TPLHLAA GH E+++VLL+ GAD++AR
Sbjct: 22 ARAGQDDEVRILMANGADVNA----HDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYC 149
GWTPLH AA E V L++ GA D+N D+ PLH
Sbjct: 78 --TDGWTPLHLAADNGHLEIVEVLLKYGA----DVNAQDAYGLTPLHLA 120
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G TPLH+ AR G +++V+ LL G DVN + G TPLHLAA+ GHLE+++VL
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF----SGSTPLHLAAKRGHLEIVEVL 99
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
L+ GAD++A G TPLH AA E V L++ GA
Sbjct: 100 LKYGADVNADD--TIGSTPLHLAADTGHLEIVEVLLKYGA 137
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 62/110 (56%), Gaps = 12/110 (10%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN + G TPLHLAA+ GHLE+++VLL+ GAD++A
Sbjct: 22 ARAGQDDEVRILMANGADVNA----EDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCP 150
G TPLH AAK E V L++ GA D+N D+ + PLH
Sbjct: 78 --FSGSTPLHLAAKRGHLEIVEVLLKYGA----DVNADDTIGSTPLHLAA 121
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 4/69 (5%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G TPLH+ A++G +++V+ LL G DVN + G TPLHLAA GHLE+++VLL+
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNA----DDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 95 GADIDARTK 103
GAD++A+ K
Sbjct: 136 GADVNAQDK 144
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 68/122 (55%), Gaps = 14/122 (11%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN A + G TPLHLAA GHLE+++VLL+ GAD+DA
Sbjct: 22 ARAGQDDEVRILMANGADVNAA----DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMM 160
G+TPLH AA E V L++NGA D+N DS PLH +W Y E++
Sbjct: 78 --VFGYTPLHLAAYWGHLEIVEVLLKNGA----DVNAMDSDGMTPLHLAA--KWGYLEIV 129
Query: 161 RF 162
Sbjct: 130 EV 131
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 64/101 (63%), Gaps = 6/101 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
D+ G TPLH+ A G +++V+ LL G DV+ + G TPLHLAA GHLE+++V
Sbjct: 43 ADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS----DVFGYTPLHLAAYWGHLEIVEV 98
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
LL+ GAD++A + G TPLH AAK E V L+++GA
Sbjct: 99 LLKNGADVNAMD--SDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
+D G+TPLH+ A G +++V+ LL G DVN S G+TPLHLAA+ G+LE+++V
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAM----DSDGMTPLHLAAKWGYLEIVEV 131
Query: 91 LLERGADIDARTK 103
LL+ GAD++A+ K
Sbjct: 132 LLKHGADVNAQDK 144
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 6/100 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G TPLH+ A G +++V+ LL G DVN + G TPLHLAA GHLE+++VL
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV----DTNGTTPLHLAASLGHLEIVEVL 87
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
L+ GAD++A K A G TPL+ AA E V L+++GA
Sbjct: 88 LKYGADVNA--KDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
D G TPLH+ A G +++V+ LL G DVN + G+TPL+LAA GHLE+++V
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADVN----AKDATGITPLYLAAYWGHLEIVEV 119
Query: 91 LLERGADIDARTK 103
LL+ GAD++A+ K
Sbjct: 120 LLKHGADVNAQDK 132
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 14/122 (11%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G D N G TPLH+AA GHLE+++VLL GAD++A
Sbjct: 10 ARAGQDDEVRILMANGADAN----AYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCPSLEWAYEEMM 160
G TPLH AA E V L++ GA D+N D+ PL+ W + E++
Sbjct: 66 TN--GTTPLHLAASLGHLEIVEVLLKYGA----DVNAKDATGITPLYLAAY--WGHLEIV 117
Query: 161 RF 162
Sbjct: 118 EV 119
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 10/132 (7%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
+D G TPLH A G ++VK LL +G D N S G TPLH AA+ GH E++ +
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK----DSDGRTPLHYAAENGHKEIVKL 88
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCP 150
LL +GAD +A K + G TPLH AA+ KE V+ L+ GA + +DS PL
Sbjct: 89 LLSKGADPNA--KDSDGRTPLHYAAENGHKEIVKLLLSKGA--DPNTSDSDGRTPLDLA- 143
Query: 151 SLEWAYEEMMRF 162
E EE+++
Sbjct: 144 -REHGNEEIVKL 154
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 10/120 (8%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
A G+ VK LL+ G D N + S G TPLH AA+ GH E++ +LL +GAD +A
Sbjct: 12 AENGNKDRVKDLLENGADPNAS----DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA-- 65
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 162
K + G TPLH AA+ KE V+ L+ GA + DS PLHY E ++E+++
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGA--DPNAKDSDGRTPLHYA--AENGHKEIVKL 121
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G TPLH A G ++VK LL +G D N S G TPLH AA+ GH E++ +L
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK----DSDGRTPLHYAAENGHKEIVKLL 122
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
L +GA D T + G TPL A + +E V+ L + G +L
Sbjct: 123 LSKGA--DPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
AA+ G+ + + LLE GAD +A + G TPLH AA+ KE V+ L+ GA +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASD--SDGRTPLHYAAENGHKEIVKLLLSKGA--DPNAK 66
Query: 139 DSRFNPPLHYCPSLEWAYEEMMRF 162
DS PLHY E ++E+++
Sbjct: 67 DSDGRTPLHYA--AENGHKEIVKL 88
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 64/105 (60%), Gaps = 12/105 (11%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHLEVMDVLLE 93
G TPLH A+ G + VK+LL +G DVN +SK G TPLHLAA+ GH E++ +LL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNA-----RSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 94 RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
+GAD++AR+K G TP H A K E V+ L GA D+N
Sbjct: 64 KGADVNARSK--DGNTPEHLAKKNGHHEIVKLLDAKGA----DVN 102
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 23 RFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQG 82
++ V +D GWTPLH+ A +G +++V+ LL G DVN + +G TPLHLAA+
Sbjct: 68 KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY----QGYTPLHLAAED 123
Query: 83 GHLEVMDVLLERGADIDARTK 103
GHLE+++VLL+ GAD++A+ K
Sbjct: 124 GHLEIVEVLLKYGADVNAQDK 144
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 6/97 (6%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G TPLH+ G +++++ LL DVN + G TPLHLAA GHLE+++VLL+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNAS----DKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 95 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
GAD++A G+TPLH AA++ E V L++ GA
Sbjct: 103 GADVNAMDY--QGYTPLHLAAEDGHLEIVEVLLKYGA 137
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN W G+TPLHL GHLE+++VLL+ AD++A
Sbjct: 22 ARAGQDDEVRILMANGADVNANDW----FGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCP 150
K GWTPLH AA E V L++ GA D+N D + PLH
Sbjct: 78 K--SGWTPLHLAAYRGHLEIVEVLLKYGA----DVNAMDYQGYTPLHLAA 121
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD G TPLH+ A G +++V+ LL G DVN G TPLHLAA GHLE+++V
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI----DIXGSTPLHLAALIGHLEIVEV 98
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
LL+ GAD++A G TPLH AA E V L+++GA
Sbjct: 99 LLKHGADVNAVDT--WGDTPLHLAAIMGHLEIVEVLLKHGA 137
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 12/110 (10%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN + G+TPLHLAA GHLE+++VLL+ GAD++A
Sbjct: 22 ARAGQDDEVRILMANGADVNA----TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCP 150
G TPLH AA E V L+++GA D+N D+ + PLH
Sbjct: 78 --IXGSTPLHLAALIGHLEIVEVLLKHGA----DVNAVDTWGDTPLHLAA 121
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVN-VAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
D G TPLH+ A G +++V+ LL G DVN V WG TPLHLAA GHLE+++V
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD-----TPLHLAAIMGHLEIVEV 131
Query: 91 LLERGADIDARTK 103
LL+ GAD++A+ K
Sbjct: 132 LLKHGADVNAQDK 144
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD G TPLH+ A G +++V+ LL G DVN G TPLHLAA GHLE+++V
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI----DIMGSTPLHLAALIGHLEIVEV 98
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
LL+ GAD++A G TPLH AA E V L+++GA
Sbjct: 99 LLKHGADVNAVDT--WGDTPLHLAAIMGHLEIVEVLLKHGA 137
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 12/110 (10%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN + G+TPLHLAA GHLE+++VLL+ GAD++A
Sbjct: 22 ARAGQDDEVRILMANGADVNA----TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYCP 150
G TPLH AA E V L+++GA D+N D+ + PLH
Sbjct: 78 --IMGSTPLHLAALIGHLEIVEVLLKHGA----DVNAVDTWGDTPLHLAA 121
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVN-VAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
D G TPLH+ A G +++V+ LL G DVN V WG TPLHLAA GHLE+++V
Sbjct: 77 DIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD-----TPLHLAAIMGHLEIVEV 131
Query: 91 LLERGADIDARTK 103
LL+ GAD++A+ K
Sbjct: 132 LLKHGADVNAQDK 144
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 10/105 (9%)
Query: 34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE 93
+G TPLH+ A++G ++V LL + + N+ G KS G+TPLHL AQ GH+ V DVL++
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNL---GNKS-GLTPLHLVAQEGHVPVADVLIK 299
Query: 94 RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
G +DA T+ G+TPLH A+ + V+FL+++ A D+N
Sbjct: 300 HGVMVDATTR--MGYTPLHVASHYGNIKLVKFLLQHQA----DVN 338
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 68/113 (60%), Gaps = 7/113 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
+ G TPLH+ A++G + + L+ G+ V+ G TPLH+A+ G+++++ L
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR----MGYTPLHVASHYGNIKLVKFL 330
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP 144
L+ AD++A+TK G++PLH AA++ + V L++NGA P++++ P
Sbjct: 331 LQHQADVNAKTK--LGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTP 380
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 7 HEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW 66
H ++ + LQ KA + DD+ TPLH AR G +VK LL+ + N+A
Sbjct: 59 HTEVAKYLLQNKAKVNAKAK-----DDQ--TPLHCAARIGHTNMVKLLLENNANPNLAT- 110
Query: 67 GPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 126
+ G TPLH+AA+ GH+E + LLE+ A TK G+TPLH AAK K L
Sbjct: 111 ---TAGHTPLHIAAREGHVETVLALLEKEASQACMTKK--GFTPLHVAAKYGKVRVAELL 165
Query: 127 IENGAFLPDDINDSRFNP 144
+E A P+ + P
Sbjct: 166 LERDAH-PNAAGKNGLTP 182
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 36 WTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG 95
TPLH+ + G + +VK LL G NV+ K TPLH+AA+ GH EV LL+
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVS----NVKVETPLHMAARAGHTEVAKYLLQNK 70
Query: 96 ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYC 149
A ++A+ K TPLH AA+ V+ L+EN A ++ + + PLH
Sbjct: 71 AKVNAKAKD--DQTPLHCAARIGHTNMVKLLLENNAN--PNLATTAGHTPLHIA 120
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLE 93
+G+TPLH+ A+ G +++ + LL+ N A G+TPLH+A +L+++ +LL
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAG----KNGLTPLHVAVHHNNLDIVKLLLP 200
Query: 94 RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 130
RG + G+TPLH AAK+ + E R L++ G
Sbjct: 201 RGG--SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G TPLHI AR+G ++ V LL++ + + A KG TPLH+AA+ G + V ++LLER
Sbjct: 113 GHTPLHIAAREGHVETVLALLEK--EASQACM--TKKGFTPLHVAAKYGKVRVAELLLER 168
Query: 95 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 130
A +A G G TPLH A + V+ L+ G
Sbjct: 169 DAHPNA--AGKNGLTPLHVAVHHNNLDIVKLLLPRG 202
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 5 MVHEQLGPFTLQRKASRKRFFRSVIDTD-------DRGWTPLHIGARKGDIKLVKQLLDE 57
M + P + K + R +++ D G TPLH+ ++ +VK LL
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 58 GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKE 117
G + AW G TPLH+AA+ +EV LL+ G +A + G TPLH AA+E
Sbjct: 202 GGSPHSPAW----NGYTPLHIAAKQNQVEVARSLLQYGGSANAES--VQGVTPLHLAAQE 255
Query: 118 RKKEAVRFLIENGA 131
E V L+ A
Sbjct: 256 GHAEMVALLLSKQA 269
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 9/91 (9%)
Query: 28 VIDTDDR-GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSK-GVTPLHLAAQGGHL 85
++D R G+TPLH+ + G+IKLVK LL DVN K+K G +PLH AAQ GH
Sbjct: 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA-----KTKLGYSPLHQAAQQGHT 357
Query: 86 EVMDVLLERGADIDARTKGACGWTPLHTAAK 116
+++ +LL+ GA + + + G TPL A +
Sbjct: 358 DIVTLLLKNGASPNEVS--SDGTTPLAIAKR 386
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
TPLH+ AR G ++ K LL VN A + TPLH AA+ GH ++ +LLE A
Sbjct: 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ----TPLHCAARIGHTNMVKLLLENNA 104
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
+ + T G TPLH AA+E E V L+E A
Sbjct: 105 NPNLAT--TAGHTPLHIAAREGHVETVLALLEKEA 137
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 73 VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAF 132
+TPLH+A+ GHL ++ LL+RGA + TPLH AA+ E ++L++N A
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV--ETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 133 LPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRES 166
+ D + PLH C + + M++ E+
Sbjct: 73 VNAKAKDDQT--PLH-CAA-RIGHTNMVKLLLEN 102
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 6/73 (8%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA-AWGPKSKGVTPLHLAAQGGHLEVMDV 90
DD G TPLH+ A++G +++V+ LL G DVN + +WG TPLHLAA GHLE+++V
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR-----TPLHLAATVGHLEIVEV 98
Query: 91 LLERGADIDARTK 103
LLE GAD++A+ K
Sbjct: 99 LLEYGADVNAQDK 111
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 44 RKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 103
R G V+ L+ G DVN GVTPLHLAA+ GHLE+++VLL+ GAD++A
Sbjct: 23 RAGQDDEVRILMANGADVNAM----DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD- 77
Query: 104 GACGWTPLHTAAKERKKEAVRFLIENGA 131
+ G TPLH AA E V L+E GA
Sbjct: 78 -SWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVN 62
+D G TPLH+ A G +++V+ LL+ G DVN
Sbjct: 76 SDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 6/73 (8%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA-AWGPKSKGVTPLHLAAQGGHLEVMDV 90
DD G TPLH+ A++G +++V+ LL G DVN + WG TPLHLAA GHLE+++V
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR-----TPLHLAATVGHLEIVEV 98
Query: 91 LLERGADIDARTK 103
LLE GAD++A+ K
Sbjct: 99 LLEYGADVNAQDK 111
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 44 RKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 103
R G V+ L+ G DVN GVTPLHLAA+ GHLE+++VLL+ GAD++A
Sbjct: 23 RAGQDDEVRILMANGADVNAM----DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD- 77
Query: 104 GACGWTPLHTAAKERKKEAVRFLIENGA 131
G TPLH AA E V L+E GA
Sbjct: 78 -IWGRTPLHLAATVGHLEIVEVLLEYGA 104
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 6/73 (8%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNV-AAWGPKSKGVTPLHLAAQGGHLEVMDV 90
DD G TPLH+ A++G +++V+ LL G DVN WG TPLHLAA GHLE+++V
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR-----TPLHLAATVGHLEIVEV 98
Query: 91 LLERGADIDARTK 103
LLE GAD++A+ K
Sbjct: 99 LLEYGADVNAQDK 111
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 44 RKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 103
R G V+ L+ G DVN GVTPLHLAA+ GHLE+++VLL+ GAD++AR
Sbjct: 23 RAGQDDEVRILMANGADVNAM----DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD- 77
Query: 104 GACGWTPLHTAAKERKKEAVRFLIENGA 131
G TPLH AA E V L+E GA
Sbjct: 78 -IWGRTPLHLAATVGHLEIVEVLLEYGA 104
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
V D DD GW+PLHI A G ++VK LL +G VN G TPLH AA E+
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV----NQNGCTPLHYAASKNRHEI 121
Query: 88 MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
+LLE GA+ DA+ T +H AA + + + L+ A +I D+ N PLH
Sbjct: 122 AVMLLEGGANPDAKDHYEA--TAMHRAAAKGNLKMIHILLYYKA--STNIQDTEGNTPLH 177
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD T LH G ++V+ LL G+ VN G +PLH+AA G E++
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----DKDDAGWSPLHIAASAGRDEIVKA 91
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPD 135
LL +GA ++A + C TPLH AA + + E L+E GA PD
Sbjct: 92 LLGKGAQVNAVNQNGC--TPLHYAASKNRHEIAVMLLEGGAN-PD 133
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 74 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
T LH A GH E+++ LL+ G ++ K GW+PLH AA + E V+ L+ GA +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 99
Query: 134 PDDINDSRFNPPLHYCPS 151
+ +N + PLHY S
Sbjct: 100 -NAVNQNGCT-PLHYAAS 115
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
T +H A KG++K++ LL N+ ++G TPLHLA +E +L+ +GA
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTNI----QDTEGNTPLHLACDEERVEEAKLLVSQGA 196
Query: 97 DIDARTKGACGWTPLHTA 114
I K TPL A
Sbjct: 197 SIYIENKEE--KTPLQVA 212
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
V D DD GW+PLHI A G ++VK LL +G VN G TPLH AA E+
Sbjct: 67 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV----NQNGCTPLHYAASKNRHEI 122
Query: 88 MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
+LLE GA+ DA+ T +H AA + + + L+ A +I D+ N PLH
Sbjct: 123 AVMLLEGGANPDAKDHYEA--TAMHRAAAKGNLKMIHILLYYKA--STNIQDTEGNTPLH 178
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD T LH G ++V+ LL G+ VN G +PLH+AA G E++
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----DKDDAGWSPLHIAASAGRDEIVKA 92
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPD 135
LL +GA ++A + C TPLH AA + + E L+E GA PD
Sbjct: 93 LLGKGAQVNAVNQNGC--TPLHYAASKNRHEIAVMLLEGGAN-PD 134
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 74 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
T LH A GH E+++ LL+ G ++ K GW+PLH AA + E V+ L+ GA +
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 100
Query: 134 PDDINDSRFNPPLHYCPS 151
+ +N + PLHY S
Sbjct: 101 -NAVNQNGCT-PLHYAAS 116
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
T +H A KG++K++ LL N+ ++G TPLHLA +E +L+ +GA
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTNI----QDTEGNTPLHLACDEERVEEAKLLVSQGA 197
Query: 97 DIDARTKGACGWTPLHTA 114
I K TPL A
Sbjct: 198 SIYIENKEE--KTPLQVA 213
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
V D DD GW+PLHI A G ++VK LL +G VN G TPLH AA E+
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV----NQNGCTPLHYAASKNRHEI 121
Query: 88 MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
+LLE GA+ DA K T +H AA + + V L+ A +I D+ N PLH
Sbjct: 122 AVMLLEGGANPDA--KDHYDATAMHRAAAKGNLKMVHILLFYKA--STNIQDTEGNTPLH 177
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD T LH G ++V+ LL G+ VN G +PLH+AA G E++
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----DKDDAGWSPLHIAASAGXDEIVKA 91
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPD 135
LL +GA ++A + C TPLH AA + + E L+E GA PD
Sbjct: 92 LLVKGAHVNAVNQNGC--TPLHYAASKNRHEIAVMLLEGGAN-PD 133
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 74 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
T LH A GH E+++ LL+ G ++ K GW+PLH AA E V+ L+ GA +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASAGXDEIVKALLVKGAHV 99
Query: 134 PDDINDSRFNPPLHYCPS 151
+ +N + PLHY S
Sbjct: 100 -NAVNQNGCT-PLHYAAS 115
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 9 QLGPFTLQRKASRKRFFRSVI---------DTDDRGWTPLHIGARKGDIKLVKQLLDEGM 59
Q G L AS+ R +V+ D T +H A KG++K+V LL
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 60 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTA 114
N+ ++G TPLHLA +E L+ +GA I K TPL A
Sbjct: 164 STNI----QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEE--KTPLQVA 212
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
V D DD GW+PLHI A G ++VK LL +G VN G TPLH AA E+
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAV----NQNGCTPLHYAASKNRHEI 121
Query: 88 MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
+LLE GA+ DA K T +H AA + + V L+ A +I D+ N PLH
Sbjct: 122 AVMLLEGGANPDA--KDHYDATAMHRAAAKGNLKMVHILLFYKA--STNIQDTEGNTPLH 177
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD T LH G ++V+ LL G+ VN G +PLH+AA G E++
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----DKDDAGWSPLHIAASAGRDEIVKA 91
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPD 135
LL +GA ++A + C TPLH AA + + E L+E GA PD
Sbjct: 92 LLVKGAHVNAVNQNGC--TPLHYAASKNRHEIAVMLLEGGAN-PD 133
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 74 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
T LH A GH E+++ LL+ G ++ K GW+PLH AA + E V+ L+ GA +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASAGRDEIVKALLVKGAHV 99
Query: 134 PDDINDSRFNPPLHYCPS 151
+ +N + PLHY S
Sbjct: 100 -NAVNQNGCT-PLHYAAS 115
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
T +H A KG++K+V LL N+ ++G TPLHLA +E L+ +GA
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNI----QDTEGNTPLHLACDEERVEEAKFLVTQGA 196
Query: 97 DIDARTKGACGWTPLHTA 114
I K TPL A
Sbjct: 197 SIYIENKEE--KTPLQVA 212
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D+ G TPLH+ A+ G +++V+ LL G DVN + G+TPLHLAA GHLE+++VL
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA----EDNFGITPLHLAAIRGHLEIVEVL 99
Query: 92 LERGADIDARTK 103
L+ GAD++A+ K
Sbjct: 100 LKHGADVNAQDK 111
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN G+TPLHLAAQ GHLE+++VLL+ GAD++A
Sbjct: 22 ARAGQDDEVRILMANGADVNAL----DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGA 131
G TPLH AA E V L+++GA
Sbjct: 78 N--FGITPLHLAAIRGHLEIVEVLLKHGA 104
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 12/104 (11%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNV---AAWGPKSKGVTPLHLAAQGGHLEV 87
T+ RG T LHI + KGDI V+ LL G D NV A W TPLH A GHL+V
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW-------TPLHEACNHGHLKV 58
Query: 88 MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
+++LL+ A ++ T G +PLH AAK + V+ L+ GA
Sbjct: 59 VELLLQHKALVN--TTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D GWTPLH G +K+V+ LL VN + + +PLH AA+ GH++++ +L
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY----QNDSPLHDAAKNGHVDIVKLL 95
Query: 92 LERGADIDA 100
L GA +A
Sbjct: 96 LSYGASRNA 104
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 71 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENG 130
+G T LH+A+ G + ++ LL+ G+D K GWTPLH A + V L+++
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSD--PNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 131 AFLPDDINDSRFNPPLH 147
A + + + + PLH
Sbjct: 67 ALV--NTTGYQNDSPLH 81
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
+D R TPLH+ A +++V+ LL G DV+ G G+ PLH A GH EV ++
Sbjct: 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG----GLVPLHNACSYGHYEVTEL 109
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
LL+ GA ++A +TPLH AA + + E L+ +GA
Sbjct: 110 LLKHGACVNAMD--LWQFTPLHEAASKNRVEVCSLLLSHGA 148
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 42 GARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDAR 101
AR G+ + + LL +NV + TPLHLAA + ++ +LL+ GAD+ A+
Sbjct: 31 AARSGNEEKLMALL---TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 102 TKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
KG G PLH A E L+++GA +
Sbjct: 88 DKG--GLVPLHNACSYGHYEVTELLLKHGACV 117
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 49 KLVKQLLDEGMDVNVAAWGPKSKG-VTPLHLAAQGGHLEVMDVLLERGADIDARTKGACG 107
++ + LL +G +VN K+K +TPLH+AA+ H +VM+VL + GA ++A + G
Sbjct: 228 QVAELLLRKGANVN-----EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD--SLG 280
Query: 108 WTPLHTAAKERKKEAVRFLIENGA 131
T LH AA + R L+ G+
Sbjct: 281 QTALHRAALAGHLQTCRLLLSYGS 304
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 3 ESMVHEQLGPFTLQRKASRKRFFRSVIDTDDRG---WTPLHIGARKGDIKLVKQLLDEGM 59
E+ +H + +RK + R + +++ TPLH+ A + +++ L G
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 60 DVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGAD 97
+N S G T LH AA GHL+ +LL G+D
Sbjct: 272 KMNAL----DSLGQTALHRAALAGHLQTCRLLLSYGSD 305
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA-AWGPKSKGVTPLHLAAQGGHLEVMDV 90
D G PLH G ++ + LL G VN W TPLH AA +EV +
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ-----FTPLHEAASKNRVEVCSL 142
Query: 91 LLERGAD---IDARTKGACGWTP 110
LL GAD ++ K A P
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAP 165
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G T LH A G ++ + LL G D ++ + +G T AAQ G+ V +L
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL----QGFT----AAQMGNEAVQQIL 328
Query: 92 LE----RGADIDAR 101
E R +D+D R
Sbjct: 329 SESTPMRTSDVDYR 342
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
D +G TPLH+ A +++V+ LL G DVN + G TPLHLAA GHLE+++V
Sbjct: 43 NDRKGNTPLHLAADYDHLEIVEVLLKHGADVNA----HDNDGSTPLHLAALFGHLEIVEV 98
Query: 91 LLERGADIDARTK 103
LL+ GAD++A+ K
Sbjct: 99 LLKHGADVNAQDK 111
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN KG TPLHLAA HLE+++VLL+ GAD++A
Sbjct: 22 ARAGQDDEVRILMANGADVNA----NDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGA 131
G TPLH AA E V L+++GA
Sbjct: 78 ND--GSTPLHLAALFGHLEIVEVLLKHGA 104
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
AA+ G + + +L+ GAD++A + G TPLH AA E V L+++GA D+N
Sbjct: 21 AARAGQDDEVRILMANGADVNANDR--KGNTPLHLAADYDHLEIVEVLLKHGA----DVN 74
Query: 139 --DSRFNPPLHYCP 150
D+ + PLH
Sbjct: 75 AHDNDGSTPLHLAA 88
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D+ G TPL++ G +++V+ LL G DVN + G TPLHLAA GHLE+ +VL
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV----DAIGFTPLHLAAFIGHLEIAEVL 99
Query: 92 LERGADIDARTK 103
L+ GAD++A+ K
Sbjct: 100 LKHGADVNAQDK 111
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 6/89 (6%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN G+TPL+LA GHLE+++VLL+ GAD++A
Sbjct: 22 ARAGQDDEVRILMANGADVNA----KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGA 131
A G+TPLH AA E L+++GA
Sbjct: 78 --AIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
AA+ G + + +L+ GAD++A+ + G TPL+ A E V L++NGA D+N
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDE--YGLTPLYLATAHGHLEIVEVLLKNGA----DVN 74
Query: 139 --DSRFNPPLH---YCPSLEWA 155
D+ PLH + LE A
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIA 96
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G TPLH+ A G +++V+ LL G DVN + G TPLHLAA HLE+++VLL+
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATG----NTGRTPLHLAAWADHLEIVEVLLKH 102
Query: 95 GADIDARTK 103
GAD++A+ K
Sbjct: 103 GADVNAQDK 111
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAA-WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDAR 101
AR G V+ L G DVN WG TPLHLAA GHLE+++VLL+ GAD++A
Sbjct: 22 ARAGQDDEVRILTANGADVNANDYWGH-----TPLHLAAMLGHLEIVEVLLKNGADVNA- 75
Query: 102 TKGACGWTPLHTAAKERKKEAVRFLIENGA 131
G G TPLH AA E V L+++GA
Sbjct: 76 -TGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVN 62
T + G TPLH+ A +++V+ LL G DVN
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLLKHGADVN 107
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G TPLH+ A +++V+ LL G DVN + G TPLHL A GHLE+++VL
Sbjct: 44 DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI----DAIGETPLHLVAMYGHLEIVEVL 99
Query: 92 LERGADIDARTK 103
L+ GAD++A+ K
Sbjct: 100 LKHGADVNAQDK 111
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN G+TPLHLAA HLE+++VLL+ GAD++A
Sbjct: 22 ARAGQDDEVRILMANGADVNA----EDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGA 131
A G TPLH A E V L+++GA
Sbjct: 78 --AIGETPLHLVAMYGHLEIVEVLLKHGA 104
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
AA+ G + + +L+ GAD++A K G TPLH AA E V L++NGA D+N
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDK--VGLTPLHLAAMNDHLEIVEVLLKNGA----DVN 74
Query: 139 --DSRFNPPLHYCP 150
D+ PLH
Sbjct: 75 AIDAIGETPLHLVA 88
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
DD G++PLH R+G +V+ L+ G +NV G TPLHLAA GH +++ L
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD----TPLHLAASHGHRDIVQKL 91
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
L+ ADI+A + G PLH A + + L+ NGA +
Sbjct: 92 LQYKADINAVNEH--GNVPLHYACFWGQDQVAEDLVANGALV 131
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
DD G++PLH R+G +V+ L+ G +NV G TPLHLAA GH +++ L
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD----TPLHLAASHGHRDIVQKL 86
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
L+ ADI+A + G PLH A + + L+ NGA +
Sbjct: 87 LQYKADINAVNEH--GNVPLHYACFWGQDQVAEDLVANGALV 126
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 45 KGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG 104
+G+ LV++++ E D ++ P +G+T LH A GH E++ L++ G +++A
Sbjct: 47 EGEFDLVQRIIYEVDDPSL----PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 162
GWTPLH AA + +FL+E+GA + + S C +E Y + +F
Sbjct: 103 --GWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF 157
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
+D G T LH G ++VK L+ G++VN A S G TPLH AA +++V L
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA----DSDGWTPLHCAASCNNVQVCKFL 122
Query: 92 LERGADIDARTKGACGWTPLHTAA 115
+E GA + A T ++ + TAA
Sbjct: 123 VESGAAVFAMT-----YSDMQTAA 141
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 23 RFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDV 61
+F +V D GWTPLH A ++++ K L++ G V
Sbjct: 91 QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 45 KGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG 104
+G+ LV++++ E D ++ P +G+T LH A GH E++ L++ G +++A
Sbjct: 47 EGEFDLVQRIIYEVDDPSL----PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 105 ACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 162
GWTPLH AA + +FL+E+GA + + S C +E Y + +F
Sbjct: 103 --GWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF 157
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
+D G T LH G ++VK L+ G++VN A S G TPLH AA +++V L
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA----DSDGWTPLHCAASCNNVQVCKFL 122
Query: 92 LERGADIDARTKGACGWTPLHTAA 115
+E GA + A T ++ + TAA
Sbjct: 123 VESGAAVFAMT-----YSDMQTAA 141
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 23 RFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDV 61
+F +V D GWTPLH A ++++ K L++ G V
Sbjct: 91 QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
D + R TPLH A + +V+ LL G DV+ G G+ PLH A GH EV +
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG----GLVPLHNACSYGHYEVAE 96
Query: 90 VLLERGADIDARTKGACGW--TPLHTAAKERKKEAVRFLIENGAFLPDDINDSR-FNPPL 146
+L++ GA ++ A W TPLH AA + K E + L+++GA D +R N PL
Sbjct: 97 LLVKHGAVVNV----ADLWKFTPLHEAAAKGKYEICKLLLQHGA---DPTKKNRDGNTPL 149
Query: 147 HYCPSLEWAYEEMMR 161
+ ++++R
Sbjct: 150 DLVKDGDTDIQDLLR 164
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
A+ GD++ VK+L +V + + TPLH AA + V++ LL+ GAD+ A+
Sbjct: 20 AKAGDVETVKKLC---TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 76
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
KG G PLH A E L+++GA + ++ D PLH
Sbjct: 77 KG--GLVPLHNACSYGHYEVAELLVKHGAVV--NVADLWKFTPLH 117
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
D + R TPLH A + +V+ LL G DV+ G G+ PLH A GH EV +
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG----GLVPLHNACSYGHYEVAE 92
Query: 90 VLLERGADIDARTKGACGW--TPLHTAAKERKKEAVRFLIENGAFLPDDINDSR-FNPPL 146
+L++ GA ++ A W TPLH AA + K E + L+++GA D +R N PL
Sbjct: 93 LLVKHGAVVNV----ADLWKFTPLHEAAAKGKYEICKLLLQHGA---DPTKKNRDGNTPL 145
Query: 147 HYCPSLEWAYEEMMR 161
+ ++++R
Sbjct: 146 DLVKDGDTDIQDLLR 160
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
A+ GD++ VK+L +V + + TPLH AA + V++ LL+ GAD+ A+
Sbjct: 16 AKAGDVETVKKLC---TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 72
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
KG G PLH A E L+++GA + ++ D PLH
Sbjct: 73 KG--GLVPLHNACSYGHYEVAELLVKHGAVV--NVADLWKFTPLH 113
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 30 DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
D + R TPLH A + +V+ LL G DV+ G G+ PLH A GH EV +
Sbjct: 39 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG----GLVPLHNACSYGHYEVAE 94
Query: 90 VLLERGADIDARTKGACGW--TPLHTAAKERKKEAVRFLIENGAFLPDDINDSR-FNPPL 146
+L++ GA ++ A W TPLH AA + K E + L+++GA D +R N PL
Sbjct: 95 LLVKHGAVVNV----ADLWKFTPLHEAAAKGKYEICKLLLQHGA---DPTKKNRDGNTPL 147
Query: 147 HYCPSLEWAYEEMMR 161
+ ++++R
Sbjct: 148 DLVKDGDTDIQDLLR 162
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
A+ GD++ VK+L +V + + TPLH AA + V++ LL+ GAD+ A+
Sbjct: 18 AKAGDVETVKKLC---TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 74
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
KG G PLH A E L+++GA + ++ D PLH
Sbjct: 75 KG--GLVPLHNACSYGHYEVAELLVKHGAVV--NVADLWKFTPLH 115
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G TPLH+ D ++V+ L D G D+N + G TPLHLA + V+++LL+
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPE---PTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 95 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND 139
GAD AR G G TPL +A R L +GA P+D D
Sbjct: 215 GADPTARMYG--GRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 72 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
G T LHLAA G ++ L GA + +G G T LH A + R L++
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERG--GHTALHLACRVRAHTCACVLLQPRP 102
Query: 132 FLPDDINDS 140
P D +D+
Sbjct: 103 SHPRDASDT 111
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G TPLH+ D ++V+ L D G D+N + G TPLHLA + V+++LL+
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPE---PTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 95 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND 139
GAD AR G G TPL +A R L +GA P+D D
Sbjct: 215 GADPTARMYG--GRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 72 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
G T LHLAA G ++ L GA + +G G T LH A + R L++
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERG--GHTALHLACRVRAHTCACVLLQPRP 102
Query: 132 FLPDDINDS 140
P D +D+
Sbjct: 103 SHPRDASDT 111
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD G +PLH+ A+ G + LL G+ + + TPLH+AA GH +++V
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR----TPLHMAASEGHANIVEV 85
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
LL+ GAD++A K T LH A + +E V LI+ GA
Sbjct: 86 LLKHGADVNA--KDMLKMTALHWATEHNHQEVVELLIKYGA 124
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 9 QLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGP 68
Q G F+ R R DR TPLH+ A +G +V+ LL G DVN
Sbjct: 43 QYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIVEVLLKHGADVN----AK 96
Query: 69 KSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 103
+T LH A + H EV+++L++ GAD+ ++K
Sbjct: 97 DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPK-SKGVTPLHLAAQGGHLEVMDVLLERG 95
TPL A ++ VK L+ G V+ PK ++G T LHLAA+ GH EV+ LL G
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVD-----PKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Query: 96 A-DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHY 148
D++ + G GWTP+ A + + + V+ L+ G+ + +I D+ N LH+
Sbjct: 101 QMDVNCQDDG--GWTPMIWATEYKHVDLVKLLLSKGSDI--NIRDNEENICLHW 150
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 74 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
+PLH AA+ GH+++ +L++ GA+ID ++ TPL AA+ EAV++LI+ GA +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ--RTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 134 PDDINDSRFNPPLH 147
D D+ + LH
Sbjct: 71 --DPKDAEGSTCLH 82
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 12/138 (8%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
DD GWTP+ + LVK LL +G D+N+ ++ LH AA G +++ ++L
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINI----RDNEENICLHWAAFSGCVDIAEIL 163
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS 151
L D+ A G +PLH AA+E + + V + + + + + PL C S
Sbjct: 164 LAAKCDLHAVNIH--GDSPLHIAARENRYDCVVLFLSRDSDVT--LKNKEGETPLQ-CAS 218
Query: 152 LE---WAYEEMMRFQRES 166
L W+ +M + ++S
Sbjct: 219 LNSQVWSALQMSKALQDS 236
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G +P+H AR G + +K L++ G DVNV P G P+HLA Q GH V+ L
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNV----PDGTGALPIHLAVQEGHTAVVSFL 126
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 126
A+ D + A G TPL A + ++ V L
Sbjct: 127 ---AAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 46 GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105
G + +LL +G NV + G +P+H AA+ G L+ + VL+E GAD++
Sbjct: 52 GSTAIALELLKQGASPNVQ----DTSGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDG 105
Query: 106 CGWTPLHTAAKERKKEAVRFL 126
G P+H A +E V FL
Sbjct: 106 TGALPIHLAVQEGHTAVVSFL 126
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
A +GD++ V++LL + V G T L + G ++ LL++GA +
Sbjct: 16 AARGDVQEVRRLLHREL---VHPDALNRFGKTALQVMMFGSTAIALE-LLKQGASPN--V 69
Query: 103 KGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHYC 149
+ G +P+H AA+ + ++ L+E+GA D+N D P+H
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGA----DVNVPDGTGALPIHLA 114
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G +P+H AR G + +K L++ G DVNV P G P+HLA Q GH V+ L
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNV----PDGTGALPIHLAVQEGHTAVVSFL 120
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFL 126
A+ D + A G TPL A + ++ V L
Sbjct: 121 ---AAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 46 GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105
G + +LL +G NV + G +P+H AA+ G L+ + VL+E GAD++
Sbjct: 46 GSTAIALELLKQGASPNV----QDTSGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDG 99
Query: 106 CGWTPLHTAAKERKKEAVRFL 126
G P+H A +E V FL
Sbjct: 100 TGALPIHLAVQEGHTAVVSFL 120
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
LL++GA + + G +P+H AA+ + ++ L+E+GA D+N D P+H
Sbjct: 54 LLKQGASPN--VQDTSGTSPVHDAARTGFLDTLKVLVEHGA----DVNVPDGTGALPIHL 107
Query: 149 C 149
Sbjct: 108 A 108
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
++ D G PLH ++ LL + +VN+ + P G TP H+A G+LEV
Sbjct: 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY-PDDSGWTPFHIACSVGNLEV 87
Query: 88 MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
+ L +R D G T LH A ++ E +FLIENGA + I D PLH
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPLH 145
Query: 148 YCPSL 152
S+
Sbjct: 146 RAASV 150
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 38/131 (29%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGM--DVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
DD GWTP HI G++++VK L D + D+N ++GVT LHLA EV
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT----NQGVTCLHLAVGKKWFEVSQ 124
Query: 90 VLLERGADIDARTK------------GA-------CG-------------WTPLHTAAKE 117
L+E GA + + K G+ CG WTPL A E
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 118 RKKEAVRFLIE 128
+A L+E
Sbjct: 185 GHGDAAVLLVE 195
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
++ D G PLH ++ LL + +VN+ + P G TP H+A G+LEV
Sbjct: 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY-PDDSGWTPFHIACSVGNLEV 87
Query: 88 MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
+ L +R D G T LH A ++ E +FLIENGA + I D PLH
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPLH 145
Query: 148 YCPSL 152
S+
Sbjct: 146 RAASV 150
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 38/131 (29%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGM--DVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
DD GWTP HI G++++VK L D + D+N ++GVT LHLA EV
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT----NQGVTCLHLAVGKKWFEVSQ 124
Query: 90 VLLERGADIDARTK------------GA-------CG-------------WTPLHTAAKE 117
L+E GA + + K G+ CG WTPL A E
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 118 RKKEAVRFLIE 128
+A L+E
Sbjct: 185 GHGDAAVLLVE 195
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 36 WTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG 95
W+P+H A G ++ L+ +G VN+ + V+PLH A GGHL + +LL+ G
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIIT----ADHVSPLHEACLGGHLSCVKILLKHG 59
Query: 96 ADIDARTKGACGW-TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
A ++ T W TPL A + V L+++GA + +S P+H
Sbjct: 60 AQVNGVTA---DWHTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPIH 106
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
TPL G V LL G V P+S +P+H AA+ GH+E ++ L+ G
Sbjct: 71 TPLFNACVSGSWDCVNLLLQHGASVQ-----PESDLASPIHEAARRGHVECVNSLIAYGG 125
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRF-NPPLH 147
+ID + TPL+ A + +++ V+ L+E+GA D+N + + PLH
Sbjct: 126 NIDHKISHL--GTPLYLACENQQRACVKKLLESGA----DVNQGKGQDSPLH 171
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGV-TPLHLAAQGGHLEVMDVLLERG 95
TPL++ VK+LL+ G DVN + KG +PLH A+ E+ +L++ G
Sbjct: 136 TPLYLACENQQRACVKKLLESGADVN------QGKGQDSPLHAVARTASEELACLLMDFG 189
Query: 96 ADIDART 102
AD A+
Sbjct: 190 ADTQAKN 196
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEV 87
++ D G PLH ++ LL + +VN+ + P G TP H+A G+LEV
Sbjct: 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY-PDDSGWTPFHIACSVGNLEV 87
Query: 88 MDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
+ L +R D G T LH A ++ E +FLIENGA + I D PLH
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPLH 145
Query: 148 YCPSL 152
S+
Sbjct: 146 RAASV 150
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 38/131 (29%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGM--DVNVAAWGPKSKGVTPLHLAAQGGHLEVMD 89
DD GWTP HI G++++VK L D + D+N ++GVT LHLA EV
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT----NQGVTCLHLAVGKKWFEVSQ 124
Query: 90 VLLERGADIDARTK------------GA-------CG-------------WTPLHTAAKE 117
L+E GA + + K G+ CG WTPL A E
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 118 RKKEAVRFLIE 128
+A L+E
Sbjct: 185 GHGDAAVLLVE 195
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
T G +PLH+ A G L+ LL G + A + PLHLA Q GH +V+
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLLKHGAN----AGARNADQAVPLHLACQQGHFQVVKC 137
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
LL+ A + K G TPL A E V L+++GA + + ++++ N LH
Sbjct: 138 LLDSNAKPN--KKDLSGNTPLIYACSGGHHELVALLLQHGASI--NASNNKGNTALH 190
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
PLH+ ++G ++VK LLD N G TPL A GGH E++ +LL+ GA
Sbjct: 121 VPLHLACQQGHFQVVKCLLDSNAKPNKKDLS----GNTPLIYACSGGHHELVALLLQHGA 176
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
I+A G T LH A E+ V L+ +GA
Sbjct: 177 SINASNNK--GNTALHEAVIEKHVFVVELLLLHGA 209
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 58 GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKE 117
G+ VNV + G +PLH+AA G +++ +LL+ GA+ AR A PLH A ++
Sbjct: 76 GLGVNVTSQ----DGSSPLHVAALHGRADLIPLLLKHGANAGARN--ADQAVPLHLACQQ 129
Query: 118 RKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFSAGETSYSSE 177
+ V+ L+++ A P+ + S P ++ C ++ S +A ++
Sbjct: 130 GHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Query: 178 KLNALSRLLVHMMPLLWLDLASDAVLS 204
A+ V ++ LL L AS VL+
Sbjct: 189 LHEAVIEKHVFVVELLLLHGASVQVLN 215
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 8 EQLGPFTLQRKASRKRFFRSVIDTDDR-------GWTPLHIGARKGDIKLVKQLLDEGMD 60
+Q P L + + + ++D++ + G TPL G +LV LL G
Sbjct: 118 DQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS 177
Query: 61 VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 103
+N + +KG T LH A H+ V+++LL GA + K
Sbjct: 178 INAS----NNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK 216
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 6 VHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAA 65
VH+ + A+R + TD+ G+TPL A G I +V+ LL G D +
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 66 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 125
G +S L LA G+ +++ +LL+ G D++ G TPL A + V+
Sbjct: 65 KGRES----ALSLACSKGYTDIVKMLLDCGVDVNEYDWN--GGTPLLYAVHGNHVKCVKM 118
Query: 126 LIENGAFLPDDINDSRFN 143
L+E+GA P DS +N
Sbjct: 119 LLESGAD-PTIETDSGYN 135
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
+ L + KG +VK LLD G+DVN W G TPL A G H++ + +LLE GA
Sbjct: 69 SALSLACSKGYTDIVKMLLDCGVDVNEYDW----NGGTPLLYAVHGNHVKCVKMLLESGA 124
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAV 123
D T L A R + V
Sbjct: 125 DPTIETDSGYNSMDLAVALGYRSVQQV 151
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DVN G TPLHLAA+ GHLE+++VLL+ GAD++A+
Sbjct: 10 ARAGQDDEVRILMANGADVNA----KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 103 K 103
K
Sbjct: 66 K 66
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
AA+ G + + +L+ GAD++A+ K G+TPLH AA+E E V L++ GA
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKD--GYTPLHLAAREGHLEIVEVLLKAGA 59
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G+TPLH+ AR+G +++V+ LL G DVN G T ++ G+ ++ ++L
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNA----QDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 36 WTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG 95
W+P+H A G ++ L+ +G VN+ + V+PLH A GGHL + +LL+ G
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIIT----ADHVSPLHEACLGGHLSCVKILLKHG 115
Query: 96 ADIDARTKGACGW-TPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLH 147
A ++ T W TPL A + V L+++GA + +S P+H
Sbjct: 116 AQVNGVTA---DWHTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPIH 162
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
TPL G V LL G V P+S +P+H AA+ GH+E ++ L+ G
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQ-----PESDLASPIHEAARRGHVECVNSLIAYGG 181
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRF-NPPLH 147
+ID + TPL+ A + +++ V+ L+E+GA D+N + + PLH
Sbjct: 182 NIDHKISHL--GTPLYLACENQQRACVKKLLESGA----DVNQGKGQDSPLH 227
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGV-TPLHLAAQGGHLEVMDVLLERG 95
TPL++ VK+LL+ G DVN + KG +PLH + E+ +L++ G
Sbjct: 192 TPLYLACENQQRACVKKLLESGADVN------QGKGQDSPLHAVVRTASEELACLLMDFG 245
Query: 96 ADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLP 134
AD A K A G P+ E A FL GA LP
Sbjct: 246 ADTQA--KNAEGKRPVELVPPESPL-AQLFLEREGASLP 281
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 6 VHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAA 65
VH+ + A+R + TD+ G+TPL A G I +V+ LL G D +
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 66 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 125
G +S L LA G+ +++ +LL+ G D++ G TPL A + V+
Sbjct: 83 KGRES----ALSLACSKGYTDIVKMLLDCGVDVNEYDWN--GGTPLLYAVHGNHVKCVKM 136
Query: 126 LIENGAFLPDDINDSRFN 143
L+E+GA P DS +N
Sbjct: 137 LLESGAD-PTIETDSGYN 153
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
+ L + KG +VK LLD G+DVN W G TPL A G H++ + +LLE GA
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYDW----NGGTPLLYAVHGNHVKCVKMLLESGA 142
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAV 123
D T L A R + V
Sbjct: 143 DPTIETDSGYNSMDLAVALGYRSVQQV 169
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 6 VHEQLGPFTLQRKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAA 65
VH+ + A+R + TD+ G+TPL A G I +V+ LL G D +
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 66 WGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRF 125
G +S L LA G+ +++ +LL+ G D++ G TPL A + V+
Sbjct: 67 KGRES----ALSLACSKGYTDIVKMLLDCGVDVNEYDWN--GGTPLLYAVHGNHVKCVKM 120
Query: 126 LIENGAFLPDDINDSRFN 143
L+E+GA P DS +N
Sbjct: 121 LLESGAD-PTIETDSGYN 137
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
+ L + KG +VK LLD G+DVN W G TPL A G H++ + +LLE GA
Sbjct: 71 SALSLACSKGYTDIVKMLLDCGVDVNEYDW----NGGTPLLYAVHGNHVKCVKMLLESGA 126
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAV 123
D T L A R + V
Sbjct: 127 DPTIETDSGYNSMDLAVALGYRSVQQV 153
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 44 RKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 103
+ GD+ VK + +G DVN G G PLH AA G LE+++ LL +GADI+A K
Sbjct: 16 KNGDLDEVKDYVAKGEDVNRTLEG----GRKPLHYAADCGQLEILEFLLLKGADINAPDK 71
Query: 104 GACGWTPLHTAAKERKKEAVRFLIENGA 131
TPL +A E V+ L+ GA
Sbjct: 72 HH--ITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
T + G PLH A G +++++ LL +G D+N P +TPL A GH+ + +
Sbjct: 36 TLEGGRKPLHYAADCGQLEILEFLLLKGADINA----PDKHHITPLLSAVYEGHVSCVKL 91
Query: 91 LLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
LL +GA D KG G TA + +A++ L++
Sbjct: 92 LLSKGA--DKTVKGPDGL----TAFEATDNQAIKALLQ 123
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 44 RKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTK 103
+ GD+ VK + +G DVN G G PLH AA G LE+++ LL +GADI+A K
Sbjct: 11 KNGDLDEVKDYVAKGEDVNRTLEG----GRKPLHYAADCGQLEILEFLLLKGADINAPDK 66
Query: 104 GACGWTPLHTAAKERKKEAVRFLIENGA 131
TPL +A E V+ L+ GA
Sbjct: 67 HH--ITPLLSAVYEGHVSCVKLLLSKGA 92
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G PLH A G +++++ LL +G D+N P +TPL A GH+ + +LL +
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINA----PDKHHITPLLSAVYEGHVSCVKLLLSK 90
Query: 95 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
GA D KG G T L +A++ L++
Sbjct: 91 GA--DKTVKGPDGLTALEAT----DNQAIKALLQ 118
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 72 GVTPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 129
G T LH+AA G+ EV+ +L++ A D K GWTPLH AA K+EA R L+EN
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQ--ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 46 GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105
GD + V +LL+ G D+N A G+T LH A +++++ L+E GA+I+
Sbjct: 51 GDTEEVLRLLERGADINYA----NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE- 105
Query: 106 CGWTPLHTAAKERKKEAVRFLIENGAFL 133
GW PLH AA + +LI GA +
Sbjct: 106 -GWIPLHAAASCGYLDIAEYLISQGAHV 132
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G T LH ++ +VK L++ G ++N P ++G PLH AA G+L++ + L+ +
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANIN----QPDNEGWIPLHAAASCGYLDIAEYLISQ 128
Query: 95 GADIDARTKGACGWTPL 111
GA + A G TPL
Sbjct: 129 GAHVGAVNSE--GDTPL 143
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G T LH+ A KG +++K L+ DVN+ + G TPLH AA G E +L+E
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDY----DGWTPLHAAAHWGKEEACRILVEN 254
Query: 95 GADIDARTK 103
D++A K
Sbjct: 255 LCDMEAVNK 263
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 64/162 (39%), Gaps = 33/162 (20%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D+ GW PLH A G + + + L+ +G V S+G TPL +A + E++
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV----NSEGDTPLDIAEEEAMEELLQNE 158
Query: 92 LER-GADIDARTK------------------------GACGWTPLHTAAKERKKEAVRFL 126
+ R G DI+A K G T LH AA + E ++ L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Query: 127 IENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRFQRESFS 168
I+ A +I D PLH + W EE R E+
Sbjct: 219 IQ--ARYDVNIKDYDGWTPLH--AAAHWGKEEACRILVENLC 256
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
A G E + LLERGADI+ G T LH A + + V+FL+ENGA + N
Sbjct: 47 ACSSGDTEEVLRLLERGADIN--YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 139 DSRFNPPLHYCPS 151
+ PLH S
Sbjct: 105 EGWI--PLHAAAS 115
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 17 RKASRKRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPL 76
RKA R R V+ D A G++++V+Q + E D + P +G+T L
Sbjct: 12 RKARRARLNPLVLLLD---------AALTGELEVVQQAVKEMNDPS----QPNEEGITAL 58
Query: 77 HLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
H A G + ++D L+ GA+++ + + GWTPLH AA L+++GA +
Sbjct: 59 HNAICGANYSIVDFLITAGANVN--SPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
++ G T LH + +V L+ G +VN P S G TPLH AA + L
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVN----SPDSHGWTPLHCAASCNDTVICMAL 106
Query: 92 LERGADIDART 102
++ GA I A T
Sbjct: 107 VQHGAAIFATT 117
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D+RG+TPL + G+I+ V+ LL+ G D ++ A +S L LA+ GG+ +++ +L
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA----LSLASTGGYTDIVGLL 88
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP 144
LER D+D G TPL A + + V L+ GA L + DS + P
Sbjct: 89 LER--DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA-DSGYTP 138
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
+ L + + G +V LL+ +D+N+ W G TPL A +G H++ ++ LL RGA
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDW----NGGTPLLYAVRGNHVKCVEALLARGA 126
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 129
D+ T+ G+TP+ A ++ V+ +IEN
Sbjct: 127 DL--TTEADSGYTPMDLAVALGYRK-VQQVIEN 156
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DV G TPLHLAA+ GHLEV+ +LLE GAD++A+
Sbjct: 14 ARAGQDDEVRILMANGADV----AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 103 K 103
K
Sbjct: 70 K 70
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
AA+ G + + +L+ GAD+ A+ K G TPLH AA+ E V+ L+E GA
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKN--GSTPLHLAARNGHLEVVKLLLEAGA 63
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNV 63
D G TPLH+ AR G +++VK LL+ G DVN
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNA 67
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
TPLH R+G + +V QL+ G D ++ +G + +HLAAQ GH ++ L+ +G
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLI----DGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 97 DIDARTKGACGWTPLHTAA 115
D+D + G TPL AA
Sbjct: 134 DVDMMDQN--GMTPLMWAA 150
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 32 DDRGWTPLHIGA-RKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
D G TPL A R + + LL + VN+ G K T LH A G+ V+ +
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL---GDKYHKNTALHWAVLAGNTTVISL 195
Query: 91 LLERGADIDART 102
LLE GA++DA+
Sbjct: 196 LLEAGANVDAQN 207
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D+RG+TPL + G+I+ V+ LL+ G D ++ A +S L LA+ GG+ +++ +L
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA----LSLASTGGYTDIVGLL 88
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNP 144
LER D+D G TPL A + V L+ GA L + DS + P
Sbjct: 89 LER--DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEA-DSGYTP 138
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
+ L + + G +V LL+ +D+N+ W G TPL A G H++ ++ LL RGA
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDW----NGGTPLLYAVHGNHVKCVEALLARGA 126
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 129
D+ T+ G+TP+ A ++ V+ +IEN
Sbjct: 127 DL--TTEADSGYTPMDLAVALGYRK-VQQVIEN 156
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 39 LHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGAD 97
+H A +G++ +K+ L +G ++ P +G TPL A+ G +E + LLE GAD
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNL---VNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 43 ARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART 102
AR G V+ L+ G DV G TPLHLAA+ GHLEV+ +LLE GAD+ A+
Sbjct: 32 ARAGQDDEVRILMANGADV----AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 103 K 103
K
Sbjct: 88 K 88
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
AA+ G + + +L+ GAD+ A+ K G TPLH AA+ E V+ L+E GA
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDK--NGSTPLHLAARNGHLEVVKLLLEAGA 81
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDV 61
V D G TPLH+ AR G +++VK LL+ G DV
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW--GPKSKGVTPLHLAAQGGHLEVMD 89
D RG TPLH+ +G + V L ++ + G T LHLA+ G+L +++
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 131
Query: 90 VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRF 142
+L+ GAD++A+ + G T LH A + + V L++ GA D+N +
Sbjct: 132 LLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCGA----DVNRVTY 179
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
T+ G T LH+ + G + +V+ L+ G DVN A P G T LHLA + +++ +
Sbjct: 110 TNYNGHTCLHLASIHGYLGIVELLVSLGADVN--AQEP-CNGRTALHLAVDLQNPDLVSL 166
Query: 91 LLERGADIDARTKGACGWTPLHTA----AKERKKEAVRFLIENGAFLPD 135
LL+ GAD++ T G++P + +++ + +EN LP+
Sbjct: 167 LLKCGADVNRVTYQ--GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 213
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 74 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 129
TPLHLA E+ + LL GA D + G TPLH A ++ +V L ++
Sbjct: 44 TPLHLAVITNQPEIAEALL--GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 97
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAW--GPKSKGVTPLHLAAQGGHLEVMD 89
D RG TPLH+ +G + V L ++ + G T LHLA+ G+L +++
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134
Query: 90 VLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
+L+ GAD++A+ + G T LH A + + V L++ GA D+N
Sbjct: 135 LLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCGA----DVN 178
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
T+ G T LH+ + G + +V+ L+ G DVN A P G T LHLA + +++ +
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVN--AQEP-CNGRTALHLAVDLQNPDLVSL 169
Query: 91 LLERGADIDARTKGACGWTPLHTA----AKERKKEAVRFLIENGAFLPDDINDSRFN 143
LL+ GAD++ T G++P + +++ + +EN LP+ ++ ++
Sbjct: 170 LLKCGADVNRVTYQ--GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 224
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 74 TPLHLAAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 129
TPLHLA E+ + LL GA D + G TPLH A ++ +V L ++
Sbjct: 47 TPLHLAVITNQPEIAEALL--GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
GWTPLH + +V+ LL G D + K G TP LAA G ++++ + L +
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVL----RKKNGATPFILAAIAGSVKLLKLFLSK 114
Query: 95 GADIDARTKGAC---GWTPLHTAAKERKKEAVRFLIENGA 131
GAD++ C G+T AA K +A++FL + GA
Sbjct: 115 GADVN-----ECDFYGFTAFMEAAVYGKVKALKFLYKRGA 149
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 47 DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106
D+ LV+QLL+ G +VN + + G TPLH A Q +++++LL GAD R K
Sbjct: 37 DVDLVQQLLEGGANVN---FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN-- 91
Query: 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRF 142
G TP AA + ++ + GA D+N+ F
Sbjct: 92 GATPFILAAIAGSVKLLKLFLSKGA----DVNECDF 123
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 12 PFTLQRKASRKRFFR-------SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA 64
PF L A + + V + D G+T A G +K +K L G +VN+
Sbjct: 95 PFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 154
Query: 65 AWGPKSK------GVTPLHLAAQGGHLEVMDVLL-ERGADIDA 100
+ + G T L AA+ GH+EV+ +LL E GAD++A
Sbjct: 155 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 197
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 57 EGMDVNVAAWGPKSK-----GVTPLHL---AAQGGHLEVMDVLLERGADIDARTKGACGW 108
E D N GP S V HL A Q ++++ LLE GA+++ + + GW
Sbjct: 2 ESRDHNNPQEGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GW 60
Query: 109 TPLHTAAKERKKEAVRFLIENGA 131
TPLH A + +++ V L+ +GA
Sbjct: 61 TPLHNAVQMSREDIVELLLRHGA 83
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 19/114 (16%)
Query: 33 DRGWTPLHIGARKGDIKLVKQLLD-EGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
+RG TPL + K + LV++LL+ E +++N S G T L LA + ++ ++L
Sbjct: 237 ERGKTPLILAVEKKHLGLVQRLLEQEHIEIN----DTDSDGKTALLLAVELKLKKIAELL 292
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPP 145
+RGA D CG + TA + V+ L+ +GA F+PP
Sbjct: 293 CKRGASTD------CGDLVM-TARRNYDHSLVKVLLSHGA-------KEDFHPP 332
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
GWTPLH + +V+ LL G D + K G TP LAA G ++++ + L +
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVL----RKKNGATPFLLAAIAGSVKLLKLFLSK 94
Query: 95 GADIDARTKGAC---GWTPLHTAAKERKKEAVRFLIENGA 131
GAD++ C G+T AA K +A++FL + GA
Sbjct: 95 GADVN-----ECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 47 DIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGAC 106
D+ LV+QLL+ G +VN + + G TPLH A Q +++++LL GAD R K
Sbjct: 17 DVDLVQQLLEGGANVN---FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN-- 71
Query: 107 GWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPSLEWAYEEMMRF 162
G TP AA + ++ + GA D+N+ F + + + + ++F
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGA----DVNECDFYGFTAFMEAAVYGKVKALKF 123
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 12 PFTLQRKASRKRFFR-------SVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVA 64
PF L A + + V + D G+T A G +K +K L G +VN+
Sbjct: 75 PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134
Query: 65 AWGPKSK------GVTPLHLAAQGGHLEVMDVLL-ERGADIDA 100
+ + G T L AA+ GH+EV+ +LL E GAD++A
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
A Q ++++ LLE GA+++ + + GWTPLH A + +++ V L+ +GA
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGA 63
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 33 DRGWTPLHIGARKGDIKLVKQLLD-EGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
+RG TPL + K + LV++LL+ E +++N S G T L LA + ++ ++L
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEIN----DTDSDGKTALLLAVELKLKKIAELL 272
Query: 92 LERGADIDA 100
+RGA D
Sbjct: 273 CKRGASTDC 281
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G +P+H AR G + +K L++ G DVN S G P+HLA + GH V+ L
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVNAL----DSTGSLPIHLAIREGHSSVVSFL 126
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLP 134
+ D + A G TPL A++R + + +++ +P
Sbjct: 127 ---APESDLHHRDASGLTPLEL-ARQRGAQNLMDILQGHMMIP 165
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 46 GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105
G + +LL +G NV + G +P+H AA+ G L+ + VL+E GAD++A +
Sbjct: 52 GSPAVALELLKQGASPNVQ----DASGTSPVHDAARTGFLDTLKVLVEHGADVNALD--S 105
Query: 106 CGWTPLHTAAKERKKEAVRFL 126
G P+H A +E V FL
Sbjct: 106 TGSLPIHLAIREGHSSVVSFL 126
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G +P+H AR G + +K L++ G DVN S G P+HLA + GH V+ L
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVNAL----DSTGSLPIHLAIREGHSSVVSFL 128
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLP 134
+ D + A G TPL A++R + + +++ +P
Sbjct: 129 ---APESDLHHRDASGLTPLEL-ARQRGAQNLMDILQGHMMIP 167
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 46 GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105
G + +LL +G NV + G +P+H AA+ G L+ + VL+E GAD++A +
Sbjct: 54 GSPAVALELLKQGASPNVQ----DASGTSPVHDAARTGFLDTLKVLVEHGADVNALD--S 107
Query: 106 CGWTPLHTAAKERKKEAVRFL 126
G P+H A +E V FL
Sbjct: 108 TGSLPIHLAIREGHSSVVSFL 128
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 25 FRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGH 84
F + D D G T L + + + ++LL +G +VN + G TPL + G+
Sbjct: 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFS----GKTPLMWSIIFGY 113
Query: 85 LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
E+ LLE GA+++ R G TPL A+K + E V+ L+E GA
Sbjct: 114 SEMSYFLLEHGANVNDRN--LEGETPLIVASKYGRSEIVKKLLELGA 158
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 27 SVIDTDD-RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHL 85
S ++T D G TPL G ++ LL+ G +VN +G TPL +A++ G
Sbjct: 92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN----DRNLEGETPLIVASKYGRS 147
Query: 86 EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
E++ LLE GADI AR G T +A ++E ++ E
Sbjct: 148 EIVKKLLELGADISARD--LTGLTAEASARIFGRQEVIKIFTE 188
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Query: 24 FFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLD-----EGMDVNVAAWGPKSKGVTPLHL 78
F R+ D+ +R TPL + G + +L++ E D+ +G T L
Sbjct: 26 FLRNYRDSYNR--TPLMVACMLGMENAIDKLVENFDKLEDKDI---------EGSTALIW 74
Query: 79 AAQGGHLEVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPD 135
A + L + + LL +G++++ TK G TPL + E FL+E+GA + D
Sbjct: 75 AVKNNRLGIAEKLLSKGSNVN--TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND 129
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 24/130 (18%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKS----KGVTPLHLAAQGGHLEVMDV 90
G T LHI A +++ L++ ++ + P + +G T LH+A ++ ++
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPEL---VFEPMTSELYEGQTALHIAVINQNVNLVRA 93
Query: 91 LLERGADIDARTKGAC-----------GWTPLHTAAKERKKEAVRFLIENGAFLPDDI-- 137
LL RGA + AR G+ G PL AA +E VR LIE+GA DI
Sbjct: 94 LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA----DIRA 149
Query: 138 NDSRFNPPLH 147
DS N LH
Sbjct: 150 QDSLGNTVLH 159
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 74 TPLHLAAQGGHLEVMDVLLE-RGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
+PL LAA+ ++ + LL+ G ++ R GA G T LH AA EA L+E
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQR--GAMGETALHIAALYDNLEAAMVLME 58
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 38/140 (27%)
Query: 28 VIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNV------------AAWGPKS----- 70
V + D G TPL+I DI++ K L+D G D+N+ A G
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 71 -KGVTP------------LHLAAQGGHLEVMDVLLERG-ADIDARTKGACGWTPLHTAAK 116
K TP L AA+ GH++ + +LLE G DID + G+T L A
Sbjct: 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND--FGYTALIEAVG 149
Query: 117 ERK-----KEAVRFLIENGA 131
R+ ++ V+ L+ENGA
Sbjct: 150 LREGNQLYQDIVKLLMENGA 169
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G T H+ ++ LLD + G+T LH+A E + +L
Sbjct: 76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
LERGADIDA G +PL A + V+ L+++GA
Sbjct: 136 LERGADIDA-VDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGV------TPLHLAAQGGHL 85
D+ G TPLHI +G++ V +L VN+ G + + TPLHLA
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRL------VNLFQQGGRELDIYNNLRQTPLHLAVITTLP 59
Query: 86 EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGA 131
V+ +L+ GA A + G T H A + R +R L+++ A
Sbjct: 60 SVVRLLVTAGASPMALDRH--GQTAAHLACEHRSPTCLRALLDSAA 103
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G +PL + +V+ LL G +VN + G + LH A+ G L ++ L+
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMY----SGSSALHSASGRGLLPLVRTLVRS 205
Query: 95 GADIDARTKGACGWTPLHTAAKERKKEAVR 124
GA D+ K TPL A R + +R
Sbjct: 206 GA--DSSLKNCHNDTPLMVARSRRVIDILR 233
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 74/164 (45%), Gaps = 28/164 (17%)
Query: 8 EQLGPFTLQRKASRKRFFRSVIDTDDRGWTPL---HIGARKGDIKLVKQLLDEGMD---- 60
E L PF LQR S+KR S + G T L + G + LLD
Sbjct: 30 ESLLPF-LQR--SKKRLTDSEFKDPETGKTCLLKAXLNLHNGQNDTIALLLDVARKTDSL 86
Query: 61 ---VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDA--------RTKGACGW- 108
VN + KG T LH+A + + ++ +L+E GAD+ A +TKG G+
Sbjct: 87 KQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFY 146
Query: 109 ---TPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLH 147
PL AA + V+FL++N ++ P DI+ DS N LH
Sbjct: 147 FGELPLSLAACTNQLAIVKFLLQN-SWQPADISARDSVGNTVLH 189
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 71 KGVTPLHLAAQGGHLEVMDVLLER 94
KG+TPL LAA G + V+ +L+R
Sbjct: 232 KGLTPLALAASSGKIGVLAYILQR 255
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 30 DTDDR-GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
D DR G+ +H AR G + ++ LL+ DVN+ ++G PLHLAA+ GHL V+
Sbjct: 64 DLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVV 119
Query: 89 DVLLERGA-DIDART-KG--ACGWTPLHTAAKERKKEAVRFLIENGA 131
+ L++ A ++ R KG AC L+ + E V + NGA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYG-----RNEVVSLMQANGA 161
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 30 DTDDR-GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
D DR G+ +H AR G + ++ LL+ DVN+ ++G PLHLAA+ GHL V+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNI----EDNEGNLPLHLAAKEGHLRVV 119
Query: 89 DVLLERGA-DIDART-KG--ACGWTPLHTAAKERKKEAVRFLIENGA 131
+ L++ A ++ R KG AC L+ + E V + NGA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYG-----RNEVVSLMQANGA 161
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD G T LH+ AR K+LL+ D N+ + G TPLH A V +
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQI 76
Query: 91 LL-ERGADIDARTKGACGWTPLHTAAK 116
L+ R D+DAR G TPL AA+
Sbjct: 77 LIRNRATDLDARMHD--GTTPLILAAR 101
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G TPL + AR +++ L++ DVN G + LH AA +++ VLL+
Sbjct: 92 GTTPLILAARLAVEGMLEDLINSHADVNAV----DDLGKSALHWAAAVNNVDAAVVLLKN 147
Query: 95 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND 139
GA+ D + TPL AA+E E + L+++ F DI D
Sbjct: 148 GANKDMQNNRE--ETPLFLAAREGSYETAKVLLDH--FANRDITD 188
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 2 IESMVHEQLGPFTLQRKASRKRFFRSVIDT-------DDRGWTPLHIGARKGDIKLVKQL 54
+++ +H+ P L + + + +I++ DD G + LH A ++ L
Sbjct: 85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 55 LDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADID 99
L G + ++ ++ TPL LAA+ G E VLL+ A+ D
Sbjct: 145 LKNGANKDM----QNNREETPLFLAAREGSYETAKVLLDHFANRD 185
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD G T LH+ AR K+LL+ D N+ + G TPLH A V +
Sbjct: 53 TDRTGETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQI 108
Query: 91 LL-ERGADIDARTKGACGWTPLHTAAK 116
L+ R D+DAR G TPL AA+
Sbjct: 109 LIRNRATDLDARMHD--GTTPLILAAR 133
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD G T LH+ AR K+LL+ D N+ + G TPLH A V +
Sbjct: 54 TDRTGETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQI 109
Query: 91 LL-ERGADIDARTKGACGWTPLHTAAK 116
L+ R D+DAR G TPL AA+
Sbjct: 110 LIRNRATDLDARMHD--GTTPLILAAR 134
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G TPL + AR +++ L++ DVN G + LH AA +++ VLL+
Sbjct: 125 GTTPLILAARLAVEGMLEDLINSHADVNAV----DDLGKSALHWAAAVNNVDAAVVLLKN 180
Query: 95 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND 139
GA+ D + TPL AA+E E + L+++ F DI D
Sbjct: 181 GANKDMQNNRE--ETPLFLAAREGSYETAKVLLDH--FANRDITD 221
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 2 IESMVHEQLGPFTLQRKASRKRFFRSVIDT-------DDRGWTPLHIGARKGDIKLVKQL 54
+++ +H+ P L + + + +I++ DD G + LH A ++ L
Sbjct: 118 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 55 LDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADID 99
L G + ++ ++ TPL LAA+ G E VLL+ A+ D
Sbjct: 178 LKNGANKDM----QNNREETPLFLAAREGSYETAKVLLDHFANRD 218
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G TPL + AR +V+ L+ D+N A + G T LH AA + E +++LL
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADADINAA----DNSGKTALHWAAAVNNTEAVNILLMH 173
Query: 95 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIEN 129
A+ DA+ TPL AA+E EA + L++N
Sbjct: 174 HANRDAQDD--KDETPLFLAAREGSYEASKALLDN 206
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D+ G TPLH A D V Q+L N+ A G TPL LAA+ +++ L
Sbjct: 81 DNTGRTPLH-AAVAADAMGVFQILLRNRATNLNAR--MHDGTTPLILAARLAIEGMVEDL 137
Query: 92 LERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFNPPLHYCPS 151
+ ADI+A G T LH AA EAV L+ + A D D + PL + +
Sbjct: 138 ITADADINAADN--SGKTALHWAAAVNNTEAVNILLMHHA--NRDAQDDKDETPL-FLAA 192
Query: 152 LEWAYE 157
E +YE
Sbjct: 193 REGSYE 198
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVL 91
D G T LH+ AR K+LLD G D N + G TPLH A + V +L
Sbjct: 48 DKTGETSLHLAARFARADAAKRLLDAGADAN----SQDNTGRTPLHAAVAADAMGVFQIL 103
Query: 92 L-ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN--DSRFNPPLHY 148
L R +++AR G TPL AA + A+ ++E+ DIN D+ LH+
Sbjct: 104 LRNRATNLNARMHD--GTTPLILAA----RLAIEGMVEDLITADADINAADNSGKTALHW 157
Query: 149 CPSL 152
++
Sbjct: 158 AAAV 161
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 30 DTDDR-GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
D DR G+ +H AR G + ++ LL+ DVN+ ++G PLHLAA+ GHL V+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVV 119
Query: 89 DVLLERGA-DIDART-KG--ACGWTPLHTAAKERKKEAVRFLIENGA 131
+ L++ A ++ R KG AC L+ + E V + NGA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYG-----RNEVVSLMQANGA 161
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 30 DTDDR-GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
D DR G+ +H AR G + ++ LL+ DVN+ ++G PLHLAA+ GHL V+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVV 119
Query: 89 DVLLERGA-DIDART-KG--ACGWTPLHTAAKERKKEAVRFLIENGA 131
+ L++ A ++ R KG AC L+ + E V + NGA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYG-----RNEVVSLMQANGA 161
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 32 DDRGWTPLHIGAR---KGDIKLVKQLLDEGMDVNVAAWGPKS----KGVTPLHLAAQGGH 84
D G T L I A + + K L+++G V+ K KG T LH AAQ +
Sbjct: 232 DRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291
Query: 85 LEVMDVLL-ERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFL 133
++ L+ E+G++ D + + G TP+ AA+E + E V +LI+ GA +
Sbjct: 292 XPIVKYLVGEKGSNKDKQDED--GKTPIXLAAQEGRIEVVXYLIQQGASV 339
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 34 RGWTPLHIGARKGDIKLVKQLLDE-GMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLL 92
+G T LH A+ + +VK L+ E G + + G TP+ LAAQ G +EV+ L+
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKD----KQDEDGKTPIXLAAQEGRIEVVXYLI 333
Query: 93 ERGADIDA 100
++GA ++A
Sbjct: 334 QQGASVEA 341
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD G T LH+ AR K+LL+ D + + G TPLH A V +
Sbjct: 18 TDRTGETALHLAARYSRSDAAKRLLEASADAXI----QDNMGRTPLHAAVSADAQGVFQI 73
Query: 91 LL-ERGADIDARTKGACGWTPLHTAAK 116
LL R D+DAR G TPL AA+
Sbjct: 74 LLRNRATDLDARMHD--GTTPLILAAR 98
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G TPL + AR +++ L++ DVN G + LH AA +++ VLL+
Sbjct: 89 GTTPLILAARLALEGMLEDLINSHADVNAV----DDLGKSALHWAAAVNNVDAAVVLLKN 144
Query: 95 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND 139
GA+ D + TPL AA+E E + L+++ F DI D
Sbjct: 145 GANKDMQNNKE--ETPLFLAAREGSYETAKVLLDH--FANRDITD 185
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 2 IESMVHEQLGPFTLQRKASRKRFFRSVIDT-------DDRGWTPLHIGARKGDIKLVKQL 54
+++ +H+ P L + + + +I++ DD G + LH A ++ L
Sbjct: 82 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 141
Query: 55 LDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADID 99
L G + ++ +K TPL LAA+ G E VLL+ A+ D
Sbjct: 142 LKNGANKDM----QNNKEETPLFLAAREGSYETAKVLLDHFANRD 182
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 30 DTDDR-GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
D DR G +H AR G + ++ LL+ DVN+ ++G PLHLAA+ GHL V+
Sbjct: 64 DLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVV 119
Query: 89 DVLLERGA-DIDART-KG--ACGWTPLHTAAKERKKEAVRFLIENGA 131
+ L++ A ++ R KG AC L+ + E V + NGA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYG-----RNEVVSLMQANGA 161
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 31 TDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDV 90
TD G T LH+ A K+LL+ D N+ + G TPLH A V +
Sbjct: 53 TDRTGATALHLAAAYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQI 108
Query: 91 LL-ERGADIDARTKGACGWTPLHTAAK 116
L+ R D+DAR G TPL AA+
Sbjct: 109 LIRNRATDLDARMHD--GTTPLILAAR 133
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
TP ARK D + + QLL E DV+ G T L A G + + +L E GA
Sbjct: 46 TPWWTAARKADEQALSQLL-EDRDVDAV----DENGRTALLFVAGLGSDKCVRLLAEAGA 100
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSR 141
D+D R G T LH AA + E V L+E GA + ++ D R
Sbjct: 101 DLDHRDMRG-GLTALHMAAGYVRPEVVEALVELGADI--EVEDER 142
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 13 FTLQRKASRKRFF-----RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG 67
+T RKA + R V D+ G T L A G K V+ L + G D++
Sbjct: 49 WTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR--- 105
Query: 68 PKSKGVTPLHLAAQGGHLEVMDVLLERGADID 99
G+T LH+AA EV++ L+E GADI+
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVELGADIE 137
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
TP ARK D + + QLL E DV+ G T L A G + + +L E GA
Sbjct: 47 TPWWTAARKADEQALSQLL-EDRDVDAV----DENGRTALLFVAGLGSDKCVRLLAEAGA 101
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSR 141
D+D R G T LH AA + E V L+E GA + ++ D R
Sbjct: 102 DLDHRDMRG-GLTALHMAAGYVRPEVVEALVELGADI--EVEDER 143
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 13 FTLQRKASRKRFF-----RSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG 67
+T RKA + R V D+ G T L A G K V+ L + G D++
Sbjct: 50 WTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR--- 106
Query: 68 PKSKGVTPLHLAAQGGHLEVMDVLLERGADID 99
G+T LH+AA EV++ L+E GADI+
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIE 138
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 71 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG------------ACGWTPLHTAAKER 118
+G T LH+A + +++L+E+GAD+ A+ +G G PL AA
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151
Query: 119 KKEAVRFLIENGAFLPD-DINDSRFNPPLHYCPSLEWAYEEMMRF 162
+ V +L ENG D DSR N LH ++ E +F
Sbjct: 152 QPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKF 196
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG----PKSK------GVTPLHLAAQGG 83
RG T LHI + V+ L+++G DV+ A G PK + G PL LAA
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151
Query: 84 HLEVMDVLLERG-ADIDARTKGACGWTPLH--TAAKERKKEAVRF--------LIENGAF 132
++ L E G D R + + G T LH A + +E +F LI+
Sbjct: 152 QPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211
Query: 133 LPD 135
PD
Sbjct: 212 FPD 214
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 61 VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART--------KGAC---GWT 109
VN +G + LH+A + L+ + +L+E GA++ AR +G C G
Sbjct: 84 VNAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGEL 143
Query: 110 PLHTAAKERKKEAVRFLIEN 129
PL AA ++ + V +L+EN
Sbjct: 144 PLSLAACTKQWDVVSYLLEN 163
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 29 IDTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVM 88
I +DD +H+ ARKG V++L++ G+ + G T LHLA + G ++
Sbjct: 14 IKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQ----NRFGCTALHLACKFGCVDTA 69
Query: 89 DVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIE 128
L G ++ + G P+H A K + V L+E
Sbjct: 70 KYLASVG-EVHSLWHGQ---KPIHLAVXANKTDLVVALVE 105
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 61 VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART--------KGAC---GWT 109
VN +G + LH+A + L+ + +L+E GAD+ R +G C G
Sbjct: 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 138
Query: 110 PLHTAAKERKKEAVRFLIEN 129
PL AA ++ + V +L+EN
Sbjct: 139 PLSLAACTKQWDVVTYLLEN 158
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG---PKSKGVT------PLHLAAQGGH 84
+G + LHI K ++ VK L++ G DV++ A G K +G PL LAA
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 85 LEVMDVLLER 94
+V+ LLE
Sbjct: 149 WDVVTYLLEN 158
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 107 GWTPLHTAAKERKKEAVRFLIENGA 131
G + LH A ++R + V+ L+ENGA
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGA 114
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 61 VNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDART--------KGAC---GWT 109
VN +G + LH+A + L+ + +L+E GAD+ R +G C G
Sbjct: 92 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 151
Query: 110 PLHTAAKERKKEAVRFLIEN 129
PL AA ++ + V +L+EN
Sbjct: 152 PLSLAACTKQWDVVTYLLEN 171
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 34 RGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG---PKSKGVT------PLHLAAQGGH 84
+G + LHI K ++ VK L++ G DV++ A G K +G PL LAA
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 85 LEVMDVLLER 94
+V+ LLE
Sbjct: 162 WDVVTYLLEN 171
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 107 GWTPLHTAAKERKKEAVRFLIENGA 131
G + LH A ++R + V+ L+ENGA
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGA 127
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 16 QRKASRKRFFRSVI-DTDDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWG----PKS 70
+R + + F S D RG T LHI + V+ L+ +G DV+ A G PK
Sbjct: 71 ERTGNMREFINSPFRDIYYRGQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKD 130
Query: 71 K------GVTPLHLAAQGGHLEVMDVLLERG-ADIDARTKGACGWTPLH--TAAKERKKE 121
+ G PL LAA +++ L E D R + + G T LH A + +E
Sbjct: 131 EGGYFYFGELPLSLAACTNQPHIVNYLTENPHKKADMRRQDSRGNTVLHALVAIADNTRE 190
Query: 122 AVRFLIE 128
+F+ +
Sbjct: 191 NTKFVTK 197
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 71 KGVTPLHLAAQGGHLEVMDVLLERGADIDARTKG------------ACGWTPLHTAAKER 118
+G T LH+A + +++L+ +GAD+ A+ +G G PL AA
Sbjct: 90 RGQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 149
Query: 119 KKEAVRFLIENGAFLPD-DINDSRFNPPLHYCPSLEWAYEEMMRF 162
+ V +L EN D DSR N LH ++ E +F
Sbjct: 150 QPHIVNYLTENPHKKADMRRQDSRGNTVLHALVAIADNTRENTKF 194
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
TPL + + LL G +VN A S G PLH A GH + + L+RGA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQA----DSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAVRFL 126
D+ AR G PL A + + V L
Sbjct: 293 DLGARDSE--GRDPLTIAMETANADIVTLL 320
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 68 PKSKGVTPLHLAA----QGGH---LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 120
P S+ + LH A GH L M L GAD++ G TPL A
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL 248
Query: 121 EAVRFLIENGAFLPDDINDSRFNPPLHY 148
A FL++NGA + + DS PLH+
Sbjct: 249 LACEFLLQNGANV--NQADSAGRGPLHH 274
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
TPL + + LL G +VN A S G PLH A GH + + L+RGA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQA----DSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAVRFL 126
D+ AR G PL A + + V L
Sbjct: 293 DLGARDSE--GRDPLTIAMETANADIVTLL 320
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 68 PKSKGVTPLHLAA----QGGH---LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 120
P S+ + LH A GH L M L GAD++ G TPL A
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL 248
Query: 121 EAVRFLIENGAFLPDDINDSRFNPPLHY 148
A FL++NGA + + DS PLH+
Sbjct: 249 LACEFLLQNGANV--NQADSAGRGPLHH 274
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGA 96
TPL + + LL G +VN A S G PLH A GH + + L+RGA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQA----DSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 97 DIDARTKGACGWTPLHTAAKERKKEAVRFL 126
D+ AR G PL A + + V L
Sbjct: 293 DLGARDSE--GRDPLTIAMETANADIVTLL 320
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 68 PKSKGVTPLHLAA----QGGH---LEVMDVLLERGADIDARTKGACGWTPLHTAAKERKK 120
P S+ + LH A GH L M L GAD++ G TPL A
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL 248
Query: 121 EAVRFLIENGAFLPDDINDSRFNPPLHY 148
A FL++NGA + + DS PLH+
Sbjct: 249 LACEFLLQNGANV--NQADSAGRGPLHH 274
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 32 DDRGWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAA 80
D G T L+I AR G+I +V LLD G D +A G+ P+ A
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYGADPFIA----NKSGLRPVDFGA 324
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 45/144 (31%)
Query: 37 TPLHIGARKGDIKLVKQLLDEGMDVN--------VAAWG--------------------- 67
PLH A++G++ +++ LD + VN W
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 68 -PKSKGVTPLHLAAQGGHLEVMDVLLERGADIDAR-----------TKGACGWTPLHTAA 115
G T LH AA G+ +++ +LL +GA D R T AC
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACA----SLLK 190
Query: 116 KERKKEAVRFLIENGAFLPDDIND 139
K++ +AVR L +L D+ +D
Sbjct: 191 KKQGTDAVRTLSNAEDYLDDEDSD 214
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 35 GWTPLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLER 94
G TPL + AR +++ L++ DVN G + LH AA +++ VLL+
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAV----DDLGKSALHWAAAVNNVDAAVVLLKN 70
Query: 95 GADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIND 139
GA+ D + TPL AA+E E + L+++ F DI D
Sbjct: 71 GANKDMQNNKE--ETPLFLAAREGSYETAKVLLDH--FANRDITD 111
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 2 IESMVHEQLGPFTLQRKASRKRFFRSVIDT-------DDRGWTPLHIGARKGDIKLVKQL 54
+++ +H+ P L + + + +I++ DD G + LH A ++ L
Sbjct: 8 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 67
Query: 55 LDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADID 99
L G + ++ +K TPL LAA+ G E VLL+ A+ D
Sbjct: 68 LKNGANKDM----QNNKEETPLFLAAREGSYETAKVLLDHFANRD 108
>pdb|2XUM|S Chain S, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 20
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 84 HLEVMDVLLERGADIDARTK 103
HLEV+ +LLE GAD+DA+ K
Sbjct: 1 HLEVVKLLLEHGADVDAQDK 20
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 38 PLHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERG 95
PLH A D K+VK LL G+D + KG T L+ A G+ + + + +++
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDS----QFDDKGNTALYYAVDSGNXQTVKLFVKKN 118
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 39 LHIGARKGDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADI 98
L A +G ++ V+QLL+ G D N G P+ + G +V ++LL GA+
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNAL----NRFGRRPIQVMMM-GSAQVAELLLLHGAEP 70
Query: 99 DARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDS 140
+ A P+H AA+E + + L GA L D+ D+
Sbjct: 71 NCADP-ATLTRPVHDAAREGFLDTLVVLHRAGARL--DVCDA 109
>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YW2|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YYA|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
pdb|2YYA|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
Length = 424
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 100 ARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDINDSRFN 143
R C + AKER EA+R++ G DI D F
Sbjct: 377 GRVLNVCAYGKTLKEAKERAYEAIRYVCFEGMHYRKDIGDKAFK 420
>pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|B Chain B, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|C Chain C, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|D Chain D, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
Length = 350
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 126 LIENGAFLPDDINDSRFNP--PLHYCPSLEWAYEEMMRFQRE 165
L++NG + + + R +P PL P + W + E+++FQ+E
Sbjct: 97 LVKNGKIVVSNASPFRMDPDVPL-INPEINWEHLELLKFQKE 137
>pdb|4B7K|B Chain B, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 20
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 84 HLEVMDVLLERGADIDARTK 103
HLEV+ +LLE GAD+ A+ K
Sbjct: 1 HLEVVKLLLEHGADVSAQDK 20
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 46 GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105
G ++ + LL G + N A ++ P+H AA+ G L+ + VL GA +D R A
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTR---PVHDAAREGFLDTLVVLHRAGARLDVRD--A 109
Query: 106 CGWTPLHTAAKERKKEAVRFL 126
G P+ A + ++ R+L
Sbjct: 110 WGRLPVDLAEELGHRDVARYL 130
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 46 GDIKLVKQLLDEGMDVNVAAWGPKSKGVTPLHLAAQGGHLEVMDVLLERGADIDARTKGA 105
G ++ + LL G + N A ++ P+H AA+ G L+ + VL GA +D R A
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTR---PVHDAAREGFLDTLVVLHRAGARLDVRD--A 109
Query: 106 CGWTPLHTAAKERKKEAVRFL 126
G P+ A + ++ R+L
Sbjct: 110 WGRLPVDLAEELGHRDVARYL 130
>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
Length = 414
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 22 KRFFRSVIDTDDRGWTPLHIGARKGDIKLVKQLLDEGMD 60
+RF R + T GW + +G++ LV QL +G+D
Sbjct: 273 RRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVD 311
>pdb|4EVF|A Chain A, Crystal Structure Of Apo Alpha-1 Giardin
pdb|4EVH|A Chain A, Crystal Structure Of Calcium-Bound Alpha-1 Giardin
Length = 295
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 86 EVMDVLLERGADIDARTKGACGWTPLHTAAKERKKEAVRFLIENGAFLPDDIN 138
+V D+ E IDA+ + + +A+ R+K A ++ G LPDDI
Sbjct: 3 KVTDIANELKQAIDAKDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIK 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,269,292
Number of Sequences: 62578
Number of extensions: 251205
Number of successful extensions: 1450
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 350
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)