BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028372
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 261 bits (667), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 121/198 (61%), Positives = 146/198 (73%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSVKDRI +SMI DAE KGLI
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A
Sbjct: 63 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+S
Sbjct: 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 182
Query: 187 XXXXXXRFLKENNPDIKV 204
++LKE N ++K+
Sbjct: 183 TITGAGKYLKEQNANVKL 200
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 261 bits (667), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 121/198 (61%), Positives = 146/198 (73%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSVKDRI +SMI DAE KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+S
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 187 XXXXXXRFLKENNPDIKV 204
++LKE N ++K+
Sbjct: 185 TITGAGKYLKEQNANVKL 202
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 259 bits (661), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 120/198 (60%), Positives = 145/198 (73%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSV DRI +SMI DAE KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGLIK 64
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+S
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 187 XXXXXXRFLKENNPDIKV 204
++LKE N ++K+
Sbjct: 185 TITGAGKYLKEQNANVKL 202
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 254 bits (649), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 117/203 (57%), Positives = 145/203 (71%)
Query: 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
D I +V++LIG TPMVYLN++ GCVA IAAKLE MEPC SVKDRI YSM+ DAE K
Sbjct: 109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQK 168
Query: 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
G I+PGK+ L+E TSGNTG+GLAFIAA+RGY LI+ MP++ SMERR++L+A GAE++L D
Sbjct: 169 GFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTD 228
Query: 123 SALRFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXX 182
A TPD Y+L+QF+NPANPKIHYETTGPEIW D+ GKVD F++
Sbjct: 229 PAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGI 288
Query: 183 XXXXXXXXXXRFLKENNPDIKVV 205
RF+KE NP +V+
Sbjct: 289 GTGGTITGVGRFIKEKNPKTQVI 311
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 137/198 (69%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
IK+ V++LIG TP+VYLN V +GC A +A K E M+P +S+KDR AY+MI DAE+K LIT
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLIT 84
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGKTTLIE TSGN G+ +AF+AA +GY +++ MPS S+ERR+ +RA GAE+IL D A
Sbjct: 85 PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG 144
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+ ++L+QF NPAN ++H+ETTGPEIW+D+ G+VD F+
Sbjct: 145 MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGG 204
Query: 187 XXXXXXRFLKENNPDIKV 204
++LK NP++K+
Sbjct: 205 TVSGVGQYLKSKNPNVKI 222
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 220 bits (560), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 98/198 (49%), Positives = 136/198 (68%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
IK+ V++LIG TP+VYLN V +GC A +A K E M+P +S+ DR AY+MI DAE+K LIT
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLIT 84
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGKTTLIE TSGN G+ +AF+AA +GY +++ MPS S+ERR+ +RA GAE+IL D A
Sbjct: 85 PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG 144
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+ ++L+QF NPAN ++H+ETTGPEIW+D+ G+VD F+
Sbjct: 145 MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGG 204
Query: 187 XXXXXXRFLKENNPDIKV 204
++LK NP++K+
Sbjct: 205 TVSGVGQYLKSKNPNVKI 222
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Query: 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+I D+T+LIG TP+V L V DG VA I AKLE P +SVKDRI +M++ AE GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
P T ++E TSGNTG+ LA + AARGY ++ MP T S+ERR++LRA GAE+IL A
Sbjct: 65 KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
++ +QFENPANP IH TT E+W+D+ GKVD ++
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 186 XXXXXXXRFLKENNPDIKVV 205
+ +KE P + V
Sbjct: 184 GTITGVAQVIKERKPSARFV 203
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 118/200 (59%), Gaps = 3/200 (1%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I ++T+LIG TP+V L V DG A + AKLE+ P S+KDRI +MI AE GLI
Sbjct: 7 IAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
P T ++E TSGNTG+ LA ++AARGY ++ MP T S+ERR++LRA GAE++L A
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGA-E 124
Query: 127 FXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
T D Y + +QFENPANP +H TT E+W+D+ GKVD F+S
Sbjct: 125 GMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTG 184
Query: 186 XXXXXXXRFLKENNPDIKVV 205
+ +K+ P + V
Sbjct: 185 GTITGVAQVIKQRRPSAQFV 204
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Query: 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+I D+T+LIG TP+V L V DG VA I AKLE P +SV DRI +M++ AE GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLI 64
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
P T ++E TSGNTG+ LA + AARGY ++ MP T S+ERR++LRA GAE+IL A
Sbjct: 65 KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
++ +QFENPANP IH TT E+W+D+ GKVD ++
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 186 XXXXXXXRFLKENNPDIKVV 205
+ +KE P + V
Sbjct: 184 GTITGVAQVIKERKPSARFV 203
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 117/200 (58%), Gaps = 3/200 (1%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I ++ +LIG TP+V L V DG A + AKLE+ P S+KDRI +MI AE GLI
Sbjct: 7 IAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
P T ++E TSGNTG+ LA ++AARGY ++ MP T S+ERR++LRA GAE++L A
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGA-E 124
Query: 127 FXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
T D Y + +QFENPANP +H TT E+W+D+ GKVD F+S
Sbjct: 125 GMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTG 184
Query: 186 XXXXXXXRFLKENNPDIKVV 205
+ +K+ P + V
Sbjct: 185 GTITGVAQVIKQRRPSAQFV 204
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/191 (46%), Positives = 119/191 (62%), Gaps = 5/191 (2%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I D + IG+TP+V LN + +G RI AK+E+ P SVK RI +MI DAE +G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG L+E T+GNTG+ LA++AAARGY L + MP T S+ERR +L+ALGA ++L + A
Sbjct: 60 PG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 127 FXXXXXXXXXXXXXTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P Y LL+QF NPANP+IH +TTGPEIW+D+ G+VD FIS
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 186 XXXXXXXRFLK 196
R++K
Sbjct: 179 GTLTGVTRYIK 189
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 163 bits (412), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 118/191 (61%), Gaps = 5/191 (2%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I D + IG+TP+V LN + +G RI AK+E+ P SV RI +MI DAE +G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGVLK 59
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG L+E T+GNTG+ LA++AAARGY L + MP T S+ERR +L+ALGA ++L + A
Sbjct: 60 PG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 127 FXXXXXXXXXXXXXTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P Y LL+QF NPANP+IH +TTGPEIW+D+ G+VD FIS
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 186 XXXXXXXRFLK 196
R++K
Sbjct: 179 GTLTGVTRYIK 189
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 163 bits (412), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 118/192 (61%), Gaps = 2/192 (1%)
Query: 15 IGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGK-TTLI 73
IG TP+V L VV+ +A + KLE + P S+KDR A+ MIKDAE++G++ PG ++
Sbjct: 7 IGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIV 66
Query: 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXX 133
E TSGNTG+GLA IAA+RGY LI+ MP+ S ER+ VL+A GAE++L D R
Sbjct: 67 EPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE 126
Query: 134 XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXXR 193
++ QF+NPAN + HYETTGPE+++ G++DAF+ R
Sbjct: 127 ALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGR 185
Query: 194 FLKENNPDIKVV 205
+LKE P +KV+
Sbjct: 186 YLKERIPHVKVI 197
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 120/195 (61%), Gaps = 4/195 (2%)
Query: 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
+TELIG+TP V LN +VD A + KLE M P SSVKDRIA +MI+ AE G + PG T
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXX 130
++E TSGNTG+GLA +AAA+GY ++VMP T S+ERR +LRA GAE++L A
Sbjct: 68 -IVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 131 XXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXX 189
GY + +QF+N ANP+IH TTG EI + G ++DAF++
Sbjct: 127 IAKAEELVRE--HGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTIT 184
Query: 190 XXXRFLKENNPDIKV 204
+ L+E P+IK+
Sbjct: 185 GAGKVLREAYPNIKI 199
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 108/193 (55%), Gaps = 2/193 (1%)
Query: 13 ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
+ IGNTP+V L + + + KLE P SVKDR A SMI +AE +G I PG L
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-L 64
Query: 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
IE TSGNTG+ LA IAA +GY + ++MP S ERR +RA GAE+IL + +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
+G LL QF NP NP HY TTGPEIWQ +GG++ F+S
Sbjct: 124 DLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVV 205
RF++E + + +V
Sbjct: 184 RFMREQSKPVTIV 196
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 149 bits (377), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 107/193 (55%), Gaps = 2/193 (1%)
Query: 13 ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
+ IGNTP+V L + + + KLE P SV DR A SMI +AE +G I PG L
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGDV-L 64
Query: 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
IE TSGNTG+ LA IAA +GY + ++MP S ERR +RA GAE+IL + +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
+G LL QF NP NPK HY TTGPEIWQ +GG++ F+S
Sbjct: 124 DLALEMANRGEGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVV 205
F++E + + +V
Sbjct: 184 EFMREQSKPVTIV 196
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 111/199 (55%), Gaps = 1/199 (0%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
+ + + +LIG TP +YLN + + A++ K+E P +SVKDR+ +++ AE +G +
Sbjct: 32 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLI 90
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGK+ ++E +SGNTGV LA + A RGY +II MP + S+ERR +LR GAE+IL +AL
Sbjct: 91 PGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 150
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
P+ L QF N IH ETTGPEIW+ + VD FI+
Sbjct: 151 MKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 210
Query: 187 XXXXXXRFLKENNPDIKVV 205
R LK+ ++V
Sbjct: 211 TLTGVARALKKMGSHARIV 229
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 107/193 (55%), Gaps = 2/193 (1%)
Query: 13 ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
+ IGNTP+V L + + + KLE P SV DR A SMI +AE +G I PG L
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGDV-L 64
Query: 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
IE TSGNTG+ LA IAA +GY + ++MP S ERR +RA GAE+IL + +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
+G LL QF NP NP HY TTGPEIWQ +GG++ F+S
Sbjct: 124 DLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVV 205
RF++E + + +V
Sbjct: 184 RFMREQSKPVTIV 196
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 106/193 (54%), Gaps = 2/193 (1%)
Query: 13 ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
+ IGNTP+V L + + I KLE P SVKDR A SMI +AE +G I PG L
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-L 64
Query: 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
IE TSGNTG+ LA IAA +GY + ++MP S ERR +RA GAE+IL + +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
+G LL QF NP NP HY TTGPEIW+ + G++ F+S
Sbjct: 124 DLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVV 205
RFL+E + +V
Sbjct: 184 RFLREQEKPVTIV 196
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
+ + + +LIG TP +YLN + + A++ K+E P +SV DR+ +++ AE +G +
Sbjct: 11 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKLI 69
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGK+ ++E +SGNTGV LA + A RGY +II MP + S+ERR +LR GAE+IL +AL
Sbjct: 70 PGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 129
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
P+ L QF N IH ETTGPEIW+ + VD FI+
Sbjct: 130 MKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 189
Query: 187 XXXXXXRFLKENNPDIKVV 205
R LK+ ++V
Sbjct: 190 TLTGVARALKKMGSHARIV 208
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 108/201 (53%), Gaps = 6/201 (2%)
Query: 10 DVTELIGNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITP 67
D+ + IG+TPMV +N + G + AK E SVKDRI+ MI+DAE G + P
Sbjct: 36 DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKP 95
Query: 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
G T +IE TSGNTG+GLA AA RGY IIVMP S E+ VLRALGAEI+ + RF
Sbjct: 96 GDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARF 154
Query: 128 XXXXXXXXXX---XXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXX 184
P+ ++L Q+ N +NP HY+TT EI Q GK+D ++
Sbjct: 155 DSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGT 214
Query: 185 XXXXXXXXRFLKENNPDIKVV 205
R LKE P +++
Sbjct: 215 GGTITGIARKLKEKCPGCRII 235
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 108/201 (53%), Gaps = 6/201 (2%)
Query: 10 DVTELIGNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITP 67
D+ + IG+TPMV +N + G + AK E SVKDRI+ MI+DAE G + P
Sbjct: 101 DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKP 160
Query: 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
G T +IE TSGNTG+GLA AA RGY IIVMP S E+ VLRALGAEI+ + RF
Sbjct: 161 GDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARF 219
Query: 128 XXXXXXXXXX---XXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXX 184
P+ ++L Q+ N +NP HY+TT EI Q GK+D ++
Sbjct: 220 DSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGT 279
Query: 185 XXXXXXXXRFLKENNPDIKVV 205
R LKE P +++
Sbjct: 280 GGTITGIARKLKEKCPGCRII 300
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 99/167 (59%), Gaps = 4/167 (2%)
Query: 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
AI D + IGNTP+V L + G + K+E P SV RI +M+ AE G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTL 59
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
T GK +++ TSGNTG+ LA++AAARGY + + MP T S+ER+ +L LG ++L + A
Sbjct: 60 TKGKE-IVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 126 RFXXXXXXXXXXXXXTPDGY-LLRQFENPANPKIHYETTGPEIWQDS 171
P Y +L+QFENPANP+IH ETTGPEIW+D+
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDT 165
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 107/204 (52%), Gaps = 6/204 (2%)
Query: 7 IKRDVTELIGNTPMVYLNNV--VDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGL 64
I ++ E+IG TP+V LNN+ DG + AK E + P SVKDRI Y M++DAE++GL
Sbjct: 50 ITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGL 109
Query: 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124
+ PG T+IE TSGNTG+GLA A +GY IIVMP S E+ LR LGA+II +
Sbjct: 110 LKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTE 168
Query: 125 LRFXXXX---XXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISX 181
+ TP+ +L Q+ N NP HY+ T EI KVD +
Sbjct: 169 AAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVS 228
Query: 182 XXXXXXXXXXXRFLKENNPDIKVV 205
R +KE P ++V
Sbjct: 229 AGTAGTISGIGRKIKEQVPSCQIV 252
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 99/183 (54%), Gaps = 8/183 (4%)
Query: 14 LIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
LIG+TP+V L D +RI KLE P SVKDR A MI DAE +GL+ K ++
Sbjct: 5 LIGSTPIVRL----DSIDSRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLL---KNGIV 57
Query: 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXX 133
E TSGN G+ +A I A RG+ +I+ MP T S+ERR VL+ LGAE++L L
Sbjct: 58 EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEK 117
Query: 134 XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXXR 193
T ++L QFENP N H TTGPEI + ++DAF++ R
Sbjct: 118 ALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGR 176
Query: 194 FLK 196
LK
Sbjct: 177 VLK 179
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 99/183 (54%), Gaps = 8/183 (4%)
Query: 14 LIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
LIG+TP+V L D +RI KLE P SVKDR A MI DAE +GL+ K ++
Sbjct: 17 LIGSTPIVRL----DSIDSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLL---KNGIV 69
Query: 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXX 133
E TSGN G+ +A I A RG+ +I+ MP T S+ERR VL+ LGAE++L L
Sbjct: 70 EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEK 129
Query: 134 XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXXR 193
T ++L QFENP N H TTGPEI + ++DAF++ R
Sbjct: 130 ALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGR 188
Query: 194 FLK 196
LK
Sbjct: 189 VLK 191
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 13 ELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+ +GNTP+V L + DG R+ AKLE P S+KDR A MI+ AE GL+
Sbjct: 11 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 70
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
PG T++E TSGNTG+ LA A +GY LI VMP S+ERR +L GA+II + +
Sbjct: 71 RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 129
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P +L Q+ NPAN HY TGPE+ D ++ F++
Sbjct: 130 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 188
Query: 186 XXXXXXXRFLKENNPDIKVV 205
RFL+E+ ++K+V
Sbjct: 189 GTLMGTGRFLREHVANVKIV 208
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 103/200 (51%), Gaps = 9/200 (4%)
Query: 13 ELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+ +GNTP+V L + DG R+ AKLE P S+KDR A MI+ AE GL+
Sbjct: 9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 68
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
PG T++E TSGNTG+ LA A +GY LI VMP S+ERR +L GA+II + +
Sbjct: 69 RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 127
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P +L Q+ NPAN HY TGPE+ D ++ F++
Sbjct: 128 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 186
Query: 186 XXXXXXXRFLKENNPDIKVV 205
RFL+E+ ++ +V
Sbjct: 187 GTLMGTGRFLREHVANVAIV 206
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 103/200 (51%), Gaps = 9/200 (4%)
Query: 13 ELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+ +GNTP+V L + DG R+ AKLE P S+ DR A MI+ AE GL+
Sbjct: 12 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEADGLL 71
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
PG T++E TSGNTG+ LA A +GY LI VMP S+ERR +L GA+II + +
Sbjct: 72 RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 130
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P +L Q+ NPAN HY TGPE+ D ++ F++
Sbjct: 131 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 189
Query: 186 XXXXXXXRFLKENNPDIKVV 205
RFL+E+ ++K+V
Sbjct: 190 GTLMGTGRFLREHVANVKIV 209
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 96/179 (53%), Gaps = 7/179 (3%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCV----ARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
I ++ E IG TP+V L+ V + RI KLE P SSVKDR+ ++++ A
Sbjct: 12 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 71
Query: 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
G + PG +IE TSGNTG+ L A GY + I MPST S+ER+++++A GAE+IL +
Sbjct: 72 GRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 130
Query: 123 SALRFXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFIS 180
P Y + QF NP N H+ T EIW+D+ G+VD +S
Sbjct: 131 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVS 188
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 96/179 (53%), Gaps = 7/179 (3%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCV----ARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
I ++ E IG TP+V L+ V + RI KLE P SSVKDR+ ++++ A
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 72
Query: 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
G + PG +IE TSGNTG+ L A GY + I MPST S+ER+++++A GAE+IL +
Sbjct: 73 GRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 131
Query: 123 SALRFXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFIS 180
P Y + QF NP N H+ T EIW+D+ G+VD +S
Sbjct: 132 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVS 189
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 10/179 (5%)
Query: 33 RIAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91
R+ KLE P S SVKDR A +I + + G + + + TS N GV L+ +A
Sbjct: 111 RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLY 167
Query: 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXXXXXXXXXTPDGYL-LRQF 150
GY + +P +++ R LGA++I+ A +G++ + QF
Sbjct: 168 GYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAP--STVHLLPRVMKDSKNEGFVHVNQF 225
Query: 151 ENPANPKIHYETTGPEIWQDS---GGKVDAFISXXXXXXXXXXXXRFLKENNPDIKVVL 206
N AN + H T EI+ S G + +L+ +P I+ VL
Sbjct: 226 YNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVL 284
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
++ V E TP+ + + I K E +P S K R AY+M+ GL
Sbjct: 21 LRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMA-----GLTE 75
Query: 67 PGKTT-LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
K +I ++GN G+AF +A G +IVMP+ + + +R G E++L
Sbjct: 76 EQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL 130
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
++D A R + TP++ + R+ K E ++ S K R A S
Sbjct: 4 LQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALS------ 57
Query: 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119
K L L+ V+SGN G+A+ A G ++VMP S ++ RA GAE++
Sbjct: 58 -KALALENPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVV 115
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
K T T GN G G+A+ A G N +I MP + ER + LGAE I+ D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
K T T GN G G+A+ A G N +I MP + ER + LGAE I+ D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
K T T GN G G+A+ A G N +I MP + ER + LGAE I+ D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 10/179 (5%)
Query: 33 RIAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91
R+ KLE P S SV DR A +I + + G + + + TS N GV L+ +A
Sbjct: 111 RVWLKLEWYNPFSLSVADRPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLY 167
Query: 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXXXXXXXXXTPDGYL-LRQF 150
GY + +P +++ R LGA++I+ A +G++ + QF
Sbjct: 168 GYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAP--STVHLLPRVMKDSKNEGFVHVNQF 225
Query: 151 ENPANPKIHYETTGPEIWQDS---GGKVDAFISXXXXXXXXXXXXRFLKENNPDIKVVL 206
N AN + H T EI+ S G + +L+ +P I+ VL
Sbjct: 226 YNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVL 284
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
K T T GN G G+A+ A G N +I P + ER + LGAE I+ D
Sbjct: 112 KXTFATTTDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVTD 165
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 37 KLETMEPCSSVKDRIAYSMIKDAEDKGLIT---PGK-TTLIEVTSGNTGVGLAFIAAARG 92
K E + S K R A + I+ GLI GK ++ +SGN G L + A G
Sbjct: 45 KCELFQKTGSFKIRGALNAIR-----GLIPDTLEGKPKAVVTHSSGNHGQALTYAAKLEG 99
Query: 93 YNLIIVMPSTCSMERRIVLRALGAEIILADSA 124
IV+P T +++ ++A GA I+ ++ +
Sbjct: 100 IPAYIVVPQTAPNCKKLAIQAYGASIVYSEPS 131
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
VT L G TP++ N+ I K+E + P S KDR + DA + G+
Sbjct: 32 VTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDA-----LAHGQR 86
Query: 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILAD 122
++ ++GNT A AA G +++P +M + GA+II D
Sbjct: 87 AVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID 139
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 37 KLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLI 96
K E + S K R A + ++ L K + +SGN G L + A G
Sbjct: 45 KCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH-SSGNHGQALTYAAKLEGIPAY 103
Query: 97 IVMPSTCSMERRIVLRALGAEIILAD 122
IV+P T +++ ++A GA I+ +
Sbjct: 104 IVVPQTAPDCKKLAIQAYGASIVYCE 129
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 76 TSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
+SGN G L + A G IV+P T +++ ++A GA I+ +
Sbjct: 83 SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCE 129
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 16/90 (17%)
Query: 37 KLETMEPCSSVKDRIAYSMI----KDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARG 92
K E + S R AY+M+ ++ DKG+IT ++GN G+A A +
Sbjct: 80 KREDKQRVFSFXLRGAYNMMSNLSREELDKGVIT--------ASAGNHAQGVAL--AGQR 129
Query: 93 YNLI--IVMPSTCSMERRIVLRALGAEIIL 120
N + IVMP+T + +RALG +++L
Sbjct: 130 LNCVAKIVMPTTTPQIKIDAVRALGGDVVL 159
>pdb|2DQL|A Chain A, Crytal Structure Of The Circadian Clock Associated
Protein Pex From Anabaena
pdb|2DQL|B Chain B, Crytal Structure Of The Circadian Clock Associated
Protein Pex From Anabaena
Length = 115
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 10 DVTELIGNTPMVYLNNVVDGCV------------ARIAAKLETMEPCSSVKDRIAYSMIK 57
D+ + N P YL V C + +LET P + D + YS IK
Sbjct: 5 DIYQFFENPPPTYLCQEVAICYILYVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIK 64
Query: 58 DAEDKGLIT 66
ED IT
Sbjct: 65 FLEDNRAIT 73
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 41 MEPCSSVKDRIAYSMIKDAED---KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97
ME +++R+ ++ IKD E+ G + G ++ V S N G + I A + +L +
Sbjct: 267 MERLRGLRNRL-WNGIKDIEEVYLNGDLEHGAPNILNV-SFNYVEGESLIMALK--DLAV 322
Query: 98 VMPSTC---SMERRIVLRALGAEIILADSALRF 127
S C S+E VLRALG LA S++RF
Sbjct: 323 SSGSACTSASLEPSYVLRALGLNDELAHSSIRF 355
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 41 MEPCSSVKDRIAYSMIKDAED---KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97
ME +++R+ ++ IKD E+ G + G ++ V S N G + I A + +L +
Sbjct: 286 MERLRGLRNRL-WNGIKDIEEVYLNGDLEHGAPNILNV-SFNYVEGESLIMALK--DLAV 341
Query: 98 VMPSTC---SMERRIVLRALGAEIILADSALRF 127
S C S+E VLRALG LA S++RF
Sbjct: 342 SSGSACTSASLEPSYVLRALGLNDELAHSSIRF 374
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA 113
+G + PG++ LI SG G IA +RG V + S E+R L+A
Sbjct: 1662 RGRMQPGESVLIHSGSGGVGQAAIAIALSRGCR---VFTTVGSAEKRAYLQA 1710
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Query: 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
+ + TP++ + V VA + K E + + K R A + + + K
Sbjct: 20 IKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNE----AQRKA 75
Query: 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
++ +SGN +A A G I+MP + + G ++I+ D
Sbjct: 76 GVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYD 127
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 65 ITPGKTTLIEVTSGNTGVGLAFIAA 89
I PG+ +IE++ G +G+GL+ +
Sbjct: 13 IVPGQEMIIEISKGRSGLGLSIVGG 37
>pdb|2GN0|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|C Chain C, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|D Chain D, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN1|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN1|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN2|A Chain A, Crystal Structure Of Tetrameric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium In Complex
With Cmp At 2.5a Resolution (Hexagonal Form)
Length = 342
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 19/125 (15%)
Query: 1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAY---SMIK 57
+ED K+ + I T M N + C I K E M+ S R A+ S +
Sbjct: 24 IEDILEAKKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFXIRGAFNKLSSLT 83
Query: 58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP---------STCSMERR 108
+AE + ++ ++GN G++ A G + +VMP +TC
Sbjct: 84 EAEKR-------KGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAE 136
Query: 109 IVLRA 113
+VL
Sbjct: 137 VVLHG 141
>pdb|1UIM|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIM|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIN|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1UIN|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1V7C|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|C Chain C, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|D Chain D, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|3AEX|A Chain A, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEX|B Chain B, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEY|A Chain A, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
pdb|3AEY|B Chain B, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
Length = 351
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 11 VTELIGNTPMVYLNNVVDGCVA--RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPG 68
++ L G+TP++ L + R+ AK E + P S KDR + A + G
Sbjct: 22 ISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKA-----VEGG 76
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101
+ ++GNT A AA G I+V+P+
Sbjct: 77 AQAVACASTGNTAASAAAYAARAGILAIVVLPA 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,499,779
Number of Sequences: 62578
Number of extensions: 187496
Number of successful extensions: 540
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 55
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)