Query 028372
Match_columns 210
No_of_seqs 153 out of 1221
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 10:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03013 cysteine synthase 100.0 2.5E-53 5.4E-58 368.1 26.5 204 6-209 112-315 (429)
2 COG0031 CysK Cysteine synthase 100.0 1.7E-53 3.6E-58 351.6 24.1 200 8-208 2-203 (300)
3 PLN02565 cysteine synthase 100.0 4.7E-53 1E-57 358.4 26.1 202 7-208 5-206 (322)
4 PRK11761 cysM cysteine synthas 100.0 2.8E-52 6E-57 350.3 24.8 200 7-208 2-201 (296)
5 PLN00011 cysteine synthase 100.0 8.3E-52 1.8E-56 351.4 26.5 209 1-209 1-209 (323)
6 PLN02556 cysteine synthase/L-3 100.0 6.2E-52 1.3E-56 356.6 25.3 204 6-209 48-251 (368)
7 TIGR01138 cysM cysteine syntha 100.0 2.8E-51 6.1E-56 343.4 25.1 196 11-208 2-197 (290)
8 TIGR01136 cysKM cysteine synth 100.0 1.1E-50 2.4E-55 341.4 25.9 197 12-209 2-198 (299)
9 COG1171 IlvA Threonine dehydra 100.0 2.1E-51 4.5E-56 344.8 19.7 199 3-208 11-209 (347)
10 TIGR01139 cysK cysteine syntha 100.0 3.9E-50 8.5E-55 337.9 25.4 196 12-209 2-198 (298)
11 PRK10717 cysteine synthase A; 100.0 8.4E-50 1.8E-54 340.2 25.9 201 7-208 3-210 (330)
12 PRK07476 eutB threonine dehydr 100.0 6.2E-50 1.3E-54 339.9 22.4 198 3-209 5-202 (322)
13 PRK08526 threonine dehydratase 100.0 6.1E-50 1.3E-54 348.1 21.4 198 3-209 6-203 (403)
14 PRK08198 threonine dehydratase 100.0 1.2E-49 2.6E-54 347.6 22.1 198 3-209 8-205 (404)
15 PLN02970 serine racemase 100.0 2.5E-49 5.3E-54 336.9 23.0 197 4-209 14-210 (328)
16 PLN02356 phosphateglycerate ki 100.0 5.3E-49 1.2E-53 340.9 25.3 201 7-208 43-284 (423)
17 PRK06382 threonine dehydratase 100.0 3.8E-49 8.3E-54 344.3 22.8 198 3-209 11-208 (406)
18 cd01561 CBS_like CBS_like: Thi 100.0 2.5E-48 5.4E-53 326.0 25.9 193 16-209 1-195 (291)
19 KOG1252 Cystathionine beta-syn 100.0 8.5E-50 1.8E-54 328.9 16.7 204 5-208 40-246 (362)
20 TIGR02991 ectoine_eutB ectoine 100.0 1E-48 2.3E-53 331.5 23.5 198 3-209 5-202 (317)
21 PRK12483 threonine dehydratase 100.0 7.4E-49 1.6E-53 349.0 23.6 194 8-209 28-221 (521)
22 PRK08638 threonine dehydratase 100.0 4.5E-49 9.7E-54 335.5 20.9 197 3-208 13-209 (333)
23 PRK07048 serine/threonine dehy 100.0 7.8E-49 1.7E-53 333.1 21.0 198 3-209 10-207 (321)
24 TIGR01137 cysta_beta cystathio 100.0 1.6E-48 3.5E-53 345.2 23.9 201 8-209 2-205 (454)
25 TIGR02079 THD1 threonine dehyd 100.0 1.2E-48 2.7E-53 341.0 21.0 198 3-208 2-202 (409)
26 PRK06110 hypothetical protein; 100.0 2E-48 4.3E-53 330.7 21.6 198 3-209 7-204 (322)
27 cd06447 D-Ser-dehyd D-Serine d 100.0 2.4E-48 5.3E-53 336.6 22.5 203 3-208 22-279 (404)
28 PRK08639 threonine dehydratase 100.0 9.4E-49 2E-53 343.1 19.6 201 3-209 11-214 (420)
29 PLN02550 threonine dehydratase 100.0 3.4E-48 7.4E-53 347.0 23.3 192 10-209 102-293 (591)
30 PRK06608 threonine dehydratase 100.0 3.5E-48 7.6E-53 330.6 21.9 198 3-209 9-206 (338)
31 KOG1250 Threonine/serine dehyd 100.0 1.5E-48 3.2E-53 326.6 19.0 197 4-208 53-249 (457)
32 cd01562 Thr-dehyd Threonine de 100.0 5.4E-48 1.2E-52 325.6 21.9 199 2-209 2-200 (304)
33 PRK07334 threonine dehydratase 100.0 4.8E-48 1E-52 337.2 20.6 198 3-209 9-206 (403)
34 PRK06815 hypothetical protein; 100.0 8.2E-48 1.8E-52 326.3 20.9 198 3-209 6-203 (317)
35 TIGR01124 ilvA_2Cterm threonin 100.0 1.7E-47 3.6E-52 340.1 23.3 194 8-209 8-201 (499)
36 TIGR01127 ilvA_1Cterm threonin 100.0 1.4E-47 3E-52 332.3 21.7 183 18-209 1-183 (380)
37 cd06448 L-Ser-dehyd Serine deh 100.0 2.4E-47 5.3E-52 323.0 21.8 188 17-208 1-191 (316)
38 PRK06381 threonine synthase; V 100.0 6.6E-47 1.4E-51 321.1 23.9 189 12-209 10-207 (319)
39 PRK02991 D-serine dehydratase; 100.0 5.3E-47 1.2E-51 331.7 23.8 202 4-208 46-302 (441)
40 PRK09224 threonine dehydratase 100.0 5E-47 1.1E-51 338.1 23.4 194 8-209 11-204 (504)
41 PRK08813 threonine dehydratase 100.0 1.2E-46 2.5E-51 320.8 23.8 187 3-208 25-211 (349)
42 TIGR02035 D_Ser_am_lyase D-ser 100.0 8.5E-47 1.8E-51 329.3 23.3 192 14-208 67-297 (431)
43 PRK08246 threonine dehydratase 100.0 1.2E-46 2.5E-51 318.2 22.5 192 3-209 9-200 (310)
44 PRK06352 threonine synthase; V 100.0 9.3E-47 2E-51 323.6 20.8 191 9-209 20-216 (351)
45 cd01563 Thr-synth_1 Threonine 100.0 3.3E-46 7.1E-51 317.4 21.0 191 9-209 14-212 (324)
46 PRK08197 threonine synthase; V 100.0 5.3E-46 1.1E-50 323.5 21.5 191 10-209 72-271 (394)
47 cd00640 Trp-synth-beta_II Tryp 100.0 4.7E-45 1E-49 298.9 24.9 186 18-208 1-187 (244)
48 PRK07591 threonine synthase; V 100.0 1.2E-45 2.6E-50 323.3 22.4 191 10-208 82-281 (421)
49 PRK07409 threonine synthase; V 100.0 1.4E-45 3.1E-50 316.7 22.0 190 9-208 23-219 (353)
50 KOG1251 Serine racemase [Signa 100.0 3.1E-46 6.6E-51 295.7 15.5 198 2-208 10-207 (323)
51 PRK06721 threonine synthase; R 100.0 5.9E-45 1.3E-49 312.6 22.6 192 8-209 19-216 (352)
52 PRK05638 threonine synthase; V 100.0 4.7E-45 1E-49 321.7 22.3 187 11-209 60-252 (442)
53 PRK06450 threonine synthase; V 100.0 9.7E-45 2.1E-49 309.2 22.8 178 10-208 51-235 (338)
54 PRK06260 threonine synthase; V 100.0 6.4E-45 1.4E-49 317.0 21.2 191 9-209 59-258 (397)
55 PLN02569 threonine synthase 100.0 9.5E-44 2.1E-48 314.4 23.5 193 11-208 127-329 (484)
56 PRK08329 threonine synthase; V 100.0 1.1E-43 2.4E-48 304.3 22.8 181 11-208 58-244 (347)
57 PRK08206 diaminopropionate amm 100.0 6.5E-44 1.4E-48 310.3 21.6 202 4-208 29-263 (399)
58 TIGR01747 diampropi_NH3ly diam 100.0 1.1E-41 2.4E-46 293.8 22.4 199 5-208 11-242 (376)
59 TIGR01275 ACC_deam_rel pyridox 100.0 1E-41 2.3E-46 288.3 21.8 189 14-209 4-204 (311)
60 TIGR00260 thrC threonine synth 100.0 5.2E-42 1.1E-46 292.1 18.6 188 9-208 15-214 (328)
61 TIGR03528 2_3_DAP_am_ly diamin 100.0 1.7E-41 3.6E-46 294.5 21.6 199 6-208 31-261 (396)
62 PRK03910 D-cysteine desulfhydr 100.0 3.5E-41 7.7E-46 287.3 21.6 197 7-209 5-218 (331)
63 PRK14045 1-aminocyclopropane-1 100.0 2.7E-41 5.8E-46 287.7 20.7 199 5-209 9-219 (329)
64 KOG1481 Cysteine synthase [Ami 100.0 5.6E-42 1.2E-46 276.1 15.4 197 8-205 40-245 (391)
65 TIGR00263 trpB tryptophan synt 100.0 7.2E-41 1.6E-45 290.1 22.6 196 9-209 41-252 (385)
66 PRK13028 tryptophan synthase s 100.0 1.3E-40 2.9E-45 288.2 23.8 194 11-209 55-264 (402)
67 PRK04346 tryptophan synthase s 100.0 8.8E-41 1.9E-45 288.9 22.4 194 11-209 51-260 (397)
68 PRK13802 bifunctional indole-3 100.0 3E-40 6.4E-45 300.5 25.1 194 11-209 319-534 (695)
69 PLN02618 tryptophan synthase, 100.0 2.8E-40 6E-45 286.3 23.3 198 7-209 55-273 (410)
70 PF00291 PALP: Pyridoxal-phosp 100.0 3E-40 6.4E-45 278.1 21.6 189 11-209 1-200 (306)
71 cd06446 Trp-synth_B Tryptophan 100.0 6.6E-40 1.4E-44 282.6 22.6 199 6-209 22-236 (365)
72 cd06449 ACCD Aminocyclopropane 100.0 3.9E-40 8.5E-45 278.3 20.7 186 18-209 1-209 (307)
73 TIGR01415 trpB_rel pyridoxal-p 100.0 1.4E-39 2.9E-44 283.9 24.3 196 7-209 58-283 (419)
74 PRK12390 1-aminocyclopropane-1 100.0 7.6E-40 1.7E-44 279.7 21.4 199 5-209 3-224 (337)
75 TIGR01274 ACC_deam 1-aminocycl 100.0 1.3E-39 2.8E-44 278.3 22.5 198 6-209 3-223 (337)
76 PRK12391 tryptophan synthase s 100.0 3.6E-39 7.8E-44 281.6 24.5 192 12-209 72-292 (427)
77 PRK13803 bifunctional phosphor 100.0 2.2E-38 4.9E-43 287.8 21.7 194 11-209 264-472 (610)
78 TIGR03844 cysteate_syn cysteat 100.0 1.2E-38 2.5E-43 276.7 18.4 177 13-198 58-242 (398)
79 COG0498 ThrC Threonine synthas 100.0 3.4E-33 7.4E-38 241.1 18.4 186 10-204 69-259 (411)
80 COG0133 TrpB Tryptophan syntha 100.0 1.9E-28 4.1E-33 201.0 16.2 192 12-208 50-256 (396)
81 COG2515 Acd 1-aminocyclopropan 100.0 1.3E-27 2.8E-32 195.4 17.4 200 5-210 3-216 (323)
82 PRK09225 threonine synthase; V 99.9 1.1E-24 2.4E-29 191.8 19.4 178 17-208 88-279 (462)
83 cd01560 Thr-synth_2 Threonine 99.9 9.6E-24 2.1E-28 186.0 21.0 178 17-208 87-281 (460)
84 COG1350 Predicted alternative 99.9 2.4E-24 5.1E-29 177.5 14.3 197 7-208 68-292 (432)
85 KOG1395 Tryptophan synthase be 99.9 3.7E-24 8E-29 177.7 12.7 198 5-207 109-323 (477)
86 COG3048 DsdA D-serine dehydrat 99.8 1.1E-18 2.4E-23 143.0 13.5 191 12-205 73-302 (443)
87 PF03808 Glyco_tran_WecB: Glyc 93.7 0.58 1.3E-05 36.2 8.4 101 81-187 13-114 (172)
88 PF00107 ADH_zinc_N: Zinc-bind 93.7 1.1 2.4E-05 32.2 9.5 41 81-124 3-43 (130)
89 PRK12743 oxidoreductase; Provi 92.5 1.8 4E-05 35.0 10.1 54 69-122 3-58 (256)
90 PRK05993 short chain dehydroge 92.4 3.3 7.2E-05 34.0 11.8 52 69-123 5-56 (277)
91 PRK03562 glutathione-regulated 92.2 3.8 8.1E-05 38.3 12.9 51 70-123 401-451 (621)
92 PRK12481 2-deoxy-D-gluconate 3 91.9 3.1 6.8E-05 33.6 10.8 53 69-122 9-61 (251)
93 PRK08628 short chain dehydroge 91.6 3.6 7.8E-05 33.1 10.9 54 69-122 8-61 (258)
94 TIGR01064 pyruv_kin pyruvate k 91.4 6 0.00013 35.8 12.8 119 84-208 262-403 (473)
95 PRK08226 short chain dehydroge 91.4 3.1 6.7E-05 33.6 10.3 54 69-122 7-60 (263)
96 COG0604 Qor NADPH:quinone redu 91.1 3.6 7.7E-05 35.2 10.7 58 62-122 137-194 (326)
97 cd08294 leukotriene_B4_DH_like 91.1 4.4 9.5E-05 33.8 11.2 58 61-121 137-194 (329)
98 cd06533 Glyco_transf_WecG_TagA 90.9 2.7 5.8E-05 32.4 9.0 116 81-207 11-131 (171)
99 PRK08993 2-deoxy-D-gluconate 3 90.9 6.2 0.00014 31.8 11.6 54 69-123 11-64 (253)
100 PRK13656 trans-2-enoyl-CoA red 90.8 11 0.00024 33.3 13.4 58 39-99 13-73 (398)
101 PRK06182 short chain dehydroge 90.8 6.7 0.00015 31.9 11.9 52 69-123 4-55 (273)
102 PF05368 NmrA: NmrA-like famil 90.8 5.4 0.00012 31.7 11.0 50 72-122 2-51 (233)
103 PRK08862 short chain dehydroge 90.7 3.9 8.4E-05 32.7 10.1 54 69-122 6-60 (227)
104 TIGR01832 kduD 2-deoxy-D-gluco 90.6 5.4 0.00012 31.8 10.9 54 69-123 6-59 (248)
105 cd08230 glucose_DH Glucose deh 90.6 2.3 5E-05 36.3 9.2 54 65-119 170-223 (355)
106 PF00764 Arginosuc_synth: Argi 90.6 3.7 8E-05 36.1 10.3 127 72-206 1-138 (388)
107 PRK10669 putative cation:proto 90.4 10 0.00022 34.9 13.7 52 70-124 418-469 (558)
108 PRK03659 glutathione-regulated 90.4 10 0.00022 35.3 13.7 51 70-123 401-451 (601)
109 PRK06935 2-deoxy-D-gluconate 3 90.3 5.6 0.00012 32.1 10.9 55 69-123 16-70 (258)
110 TIGR03201 dearomat_had 6-hydro 90.2 5.1 0.00011 34.1 11.0 56 61-120 160-215 (349)
111 PRK06139 short chain dehydroge 90.2 3.4 7.4E-05 35.2 9.8 54 69-122 8-62 (330)
112 PRK08589 short chain dehydroge 89.9 4.5 9.7E-05 33.1 10.1 54 69-122 7-60 (272)
113 PRK05557 fabG 3-ketoacyl-(acyl 89.9 6.7 0.00015 31.0 10.9 33 69-101 6-38 (248)
114 PRK07478 short chain dehydroge 89.6 5.5 0.00012 32.0 10.3 54 69-122 7-61 (254)
115 PF00106 adh_short: short chai 89.6 5 0.00011 29.8 9.4 54 70-123 2-59 (167)
116 PRK07523 gluconate 5-dehydroge 89.4 5.9 0.00013 31.8 10.3 54 69-122 11-65 (255)
117 PRK08643 acetoin reductase; Va 89.4 6.9 0.00015 31.4 10.7 32 69-100 3-34 (256)
118 TIGR02819 fdhA_non_GSH formald 89.1 7.5 0.00016 34.0 11.4 56 62-120 180-235 (393)
119 PRK08063 enoyl-(acyl carrier p 89.1 8.9 0.00019 30.5 11.1 54 69-122 5-60 (250)
120 PRK05866 short chain dehydroge 89.1 5.6 0.00012 33.1 10.1 33 69-101 41-73 (293)
121 PRK07097 gluconate 5-dehydroge 88.7 6.7 0.00015 31.8 10.2 54 69-122 11-65 (265)
122 PRK09424 pntA NAD(P) transhydr 88.7 11 0.00025 34.3 12.4 50 70-122 166-215 (509)
123 PRK12826 3-ketoacyl-(acyl-carr 88.3 8.6 0.00019 30.5 10.5 54 69-122 7-61 (251)
124 KOG0025 Zn2+-binding dehydroge 88.3 4.6 0.0001 34.2 8.7 88 33-123 124-217 (354)
125 PRK08278 short chain dehydroge 88.2 11 0.00024 30.8 11.3 34 69-102 7-40 (273)
126 PRK12937 short chain dehydroge 88.2 11 0.00023 30.0 10.9 55 69-123 6-62 (245)
127 PRK07666 fabG 3-ketoacyl-(acyl 88.1 8.3 0.00018 30.6 10.3 33 69-101 8-40 (239)
128 TIGR02825 B4_12hDH leukotriene 88.1 8.6 0.00019 32.2 10.8 58 61-121 132-189 (325)
129 PRK12935 acetoacetyl-CoA reduc 88.0 8.5 0.00018 30.6 10.3 55 69-123 7-63 (247)
130 PRK08277 D-mannonate oxidoredu 88.0 8.6 0.00019 31.3 10.5 32 69-100 11-42 (278)
131 PRK08703 short chain dehydroge 87.9 8.1 0.00017 30.7 10.1 32 69-100 7-38 (239)
132 PRK12823 benD 1,6-dihydroxycyc 87.7 6.8 0.00015 31.5 9.6 72 69-140 9-81 (260)
133 KOG0023 Alcohol dehydrogenase, 87.5 5.3 0.00011 34.3 8.8 61 59-123 174-234 (360)
134 cd08295 double_bond_reductase_ 87.5 10 0.00022 32.0 10.9 57 61-120 145-202 (338)
135 PRK05653 fabG 3-ketoacyl-(acyl 87.4 12 0.00027 29.4 10.9 54 69-122 6-60 (246)
136 PRK06194 hypothetical protein; 87.4 10 0.00022 31.0 10.7 55 69-123 7-62 (287)
137 cd08274 MDR9 Medium chain dehy 87.2 7.7 0.00017 32.6 10.1 57 60-120 170-226 (350)
138 PRK06701 short chain dehydroge 87.1 15 0.00032 30.5 11.5 54 69-122 47-102 (290)
139 PRK12938 acetyacetyl-CoA reduc 87.1 9.7 0.00021 30.3 10.1 54 69-122 4-59 (246)
140 PRK08217 fabG 3-ketoacyl-(acyl 86.9 10 0.00022 30.1 10.2 54 69-122 6-60 (253)
141 PRK06181 short chain dehydroge 86.6 10 0.00022 30.6 10.1 53 70-122 3-56 (263)
142 PRK15408 autoinducer 2-binding 86.6 19 0.00042 30.7 16.3 42 163-207 199-241 (336)
143 PRK07231 fabG 3-ketoacyl-(acyl 86.5 15 0.00032 29.2 11.0 33 69-101 6-38 (251)
144 PRK06138 short chain dehydroge 86.4 13 0.00027 29.7 10.5 33 69-101 6-38 (252)
145 COG0300 DltE Short-chain dehyd 86.4 12 0.00027 31.1 10.4 55 69-123 7-63 (265)
146 PRK08303 short chain dehydroge 86.2 12 0.00027 31.4 10.7 33 69-101 9-41 (305)
147 PRK06079 enoyl-(acyl carrier p 86.2 9.5 0.00021 30.8 9.7 32 69-100 8-41 (252)
148 PF01041 DegT_DnrJ_EryC1: DegT 86.2 2.8 6E-05 36.2 6.8 86 70-155 41-128 (363)
149 cd08293 PTGR2 Prostaglandin re 86.1 15 0.00031 31.0 11.1 58 62-122 147-208 (345)
150 TIGR03366 HpnZ_proposed putati 85.9 7.6 0.00017 31.9 9.1 53 65-120 118-170 (280)
151 PRK05867 short chain dehydroge 85.9 12 0.00027 29.9 10.2 54 69-122 10-64 (253)
152 PRK06841 short chain dehydroge 85.9 15 0.00032 29.4 10.6 33 69-101 16-48 (255)
153 COG1063 Tdh Threonine dehydrog 85.8 22 0.00047 30.6 14.6 51 71-123 171-222 (350)
154 PRK07791 short chain dehydroge 85.8 14 0.0003 30.5 10.7 32 68-99 6-37 (286)
155 TIGR00696 wecB_tagA_cpsF bacte 85.8 8.6 0.00019 29.9 8.7 96 81-186 13-112 (177)
156 PRK07062 short chain dehydroge 85.7 14 0.00031 29.7 10.6 33 69-101 9-41 (265)
157 PLN03154 putative allyl alcoho 85.7 15 0.00034 31.3 11.1 58 61-121 152-210 (348)
158 cd08256 Zn_ADH2 Alcohol dehydr 85.5 17 0.00036 30.8 11.2 58 61-121 168-225 (350)
159 PRK08340 glucose-1-dehydrogena 85.4 18 0.00038 29.2 11.3 31 70-100 2-32 (259)
160 TIGR03451 mycoS_dep_FDH mycoth 85.2 13 0.00029 31.7 10.5 57 60-119 169-225 (358)
161 PRK06463 fabG 3-ketoacyl-(acyl 85.2 18 0.00039 29.0 11.8 53 69-123 8-60 (255)
162 PRK07774 short chain dehydroge 85.0 17 0.00036 28.9 10.5 32 69-100 7-38 (250)
163 PRK06947 glucose-1-dehydrogena 85.0 12 0.00025 29.9 9.6 53 70-122 4-58 (248)
164 PRK08085 gluconate 5-dehydroge 84.9 15 0.00033 29.4 10.3 31 69-99 10-40 (254)
165 cd08281 liver_ADH_like1 Zinc-d 84.9 14 0.0003 31.7 10.6 57 61-120 185-241 (371)
166 PF01210 NAD_Gly3P_dh_N: NAD-d 84.6 2.1 4.5E-05 32.4 4.7 39 72-113 2-40 (157)
167 cd01075 NAD_bind_Leu_Phe_Val_D 84.6 13 0.00029 29.3 9.5 68 49-119 6-76 (200)
168 TIGR00670 asp_carb_tr aspartat 84.6 6 0.00013 33.5 7.9 61 61-122 144-208 (301)
169 PF00070 Pyr_redox: Pyridine n 84.5 6.8 0.00015 25.7 6.8 49 72-120 2-59 (80)
170 PRK08261 fabG 3-ketoacyl-(acyl 84.5 20 0.00043 31.7 11.6 56 68-123 210-265 (450)
171 PRK05650 short chain dehydroge 84.5 16 0.00034 29.7 10.3 31 70-100 2-32 (270)
172 PRK08265 short chain dehydroge 84.5 20 0.00043 29.0 11.0 52 69-122 7-58 (261)
173 PRK06483 dihydromonapterin red 84.2 19 0.00041 28.5 11.1 53 69-123 3-55 (236)
174 PRK08936 glucose-1-dehydrogena 84.1 20 0.00044 28.8 11.2 54 69-122 8-63 (261)
175 TIGR02415 23BDH acetoin reduct 84.0 19 0.0004 28.7 10.4 54 70-123 2-56 (254)
176 TIGR03325 BphB_TodD cis-2,3-di 83.7 21 0.00046 28.7 10.8 31 69-99 6-36 (262)
177 COG2130 Putative NADP-dependen 83.6 13 0.00029 31.6 9.3 58 60-120 143-201 (340)
178 cd08292 ETR_like_2 2-enoyl thi 83.6 16 0.00036 30.2 10.2 54 61-117 133-186 (324)
179 KOG1201 Hydroxysteroid 17-beta 83.5 19 0.00042 30.4 10.3 74 68-142 38-113 (300)
180 PF09837 DUF2064: Uncharacteri 83.1 15 0.00033 26.6 9.7 98 84-187 2-100 (122)
181 TIGR02822 adh_fam_2 zinc-bindi 82.9 7.8 0.00017 32.8 8.1 56 61-120 159-214 (329)
182 PRK05872 short chain dehydroge 82.6 19 0.00041 29.9 10.2 32 69-100 10-41 (296)
183 PRK05693 short chain dehydroge 82.5 25 0.00053 28.6 11.7 50 70-122 3-52 (274)
184 COG1751 Uncharacterized conser 82.5 15 0.00032 28.1 8.2 75 43-122 7-90 (186)
185 cd08277 liver_alcohol_DH_like 82.5 30 0.00066 29.6 14.0 57 61-120 178-234 (365)
186 PRK06720 hypothetical protein; 82.4 20 0.00043 27.4 10.7 53 69-121 17-70 (169)
187 PRK06197 short chain dehydroge 82.4 19 0.00041 29.9 10.1 33 69-101 17-49 (306)
188 cd08233 butanediol_DH_like (2R 82.3 26 0.00056 29.7 11.1 58 61-121 166-223 (351)
189 PRK09880 L-idonate 5-dehydroge 82.3 16 0.00035 30.9 9.8 53 65-120 167-219 (343)
190 COG0800 Eda 2-keto-3-deoxy-6-p 82.3 24 0.00052 28.3 12.0 122 52-186 27-163 (211)
191 PRK05826 pyruvate kinase; Prov 82.2 30 0.00065 31.3 11.7 120 84-208 264-403 (465)
192 PRK10538 malonic semialdehyde 82.2 23 0.00049 28.3 10.2 31 70-100 2-32 (248)
193 cd08289 MDR_yhfp_like Yhfp put 81.9 17 0.00036 30.2 9.7 49 68-119 147-195 (326)
194 cd08297 CAD3 Cinnamyl alcohol 81.6 23 0.0005 29.7 10.5 53 64-119 162-214 (341)
195 PRK07326 short chain dehydroge 81.4 24 0.00052 27.7 10.5 32 69-100 7-38 (237)
196 PRK08594 enoyl-(acyl carrier p 81.3 27 0.00059 28.3 10.9 32 69-100 8-41 (257)
197 PRK07109 short chain dehydroge 81.3 11 0.00023 32.2 8.3 72 69-140 9-82 (334)
198 KOG2862 Alanine-glyoxylate ami 81.2 32 0.0007 29.5 10.7 85 70-154 69-155 (385)
199 PRK13394 3-hydroxybutyrate deh 81.1 16 0.00035 29.2 9.1 55 69-123 8-63 (262)
200 PRK05717 oxidoreductase; Valid 81.1 27 0.00058 28.0 11.0 31 68-98 10-40 (255)
201 cd08296 CAD_like Cinnamyl alco 81.0 23 0.0005 29.7 10.3 53 64-120 160-212 (333)
202 PRK12825 fabG 3-ketoacyl-(acyl 80.9 25 0.00054 27.6 10.8 34 69-102 7-40 (249)
203 PRK10537 voltage-gated potassi 80.8 39 0.00085 29.8 12.9 32 70-101 241-272 (393)
204 PTZ00354 alcohol dehydrogenase 80.8 31 0.00067 28.5 11.1 56 63-121 136-191 (334)
205 PRK10754 quinone oxidoreductas 80.7 31 0.00068 28.6 11.3 55 61-118 134-188 (327)
206 PRK06200 2,3-dihydroxy-2,3-dih 80.3 27 0.00059 28.1 10.2 32 69-100 7-38 (263)
207 PF04127 DFP: DNA / pantothena 80.0 14 0.0003 29.0 7.9 61 72-141 23-83 (185)
208 PRK07063 short chain dehydroge 79.9 29 0.00064 27.8 10.4 32 69-100 8-39 (260)
209 cd08287 FDH_like_ADH3 formalde 79.8 35 0.00075 28.6 11.0 56 62-120 163-218 (345)
210 PF00091 Tubulin: Tubulin/FtsZ 79.6 11 0.00023 30.1 7.3 59 152-210 91-164 (216)
211 KOG1205 Predicted dehydrogenas 79.4 21 0.00046 30.0 9.2 71 69-139 13-87 (282)
212 COG1587 HemD Uroporphyrinogen- 79.3 31 0.00068 28.0 10.2 111 81-200 86-199 (248)
213 PRK07832 short chain dehydroge 79.3 32 0.0007 27.9 12.8 31 70-100 2-32 (272)
214 TIGR00561 pntA NAD(P) transhyd 79.1 52 0.0011 30.1 14.9 51 70-123 165-215 (511)
215 cd08285 NADP_ADH NADP(H)-depen 78.7 39 0.00085 28.5 13.9 57 61-120 160-216 (351)
216 COG0078 ArgF Ornithine carbamo 78.6 12 0.00027 31.7 7.5 56 68-123 153-214 (310)
217 PRK12384 sorbitol-6-phosphate 78.4 33 0.00071 27.5 10.6 32 69-100 3-34 (259)
218 PRK12748 3-ketoacyl-(acyl-carr 78.4 33 0.00071 27.5 10.9 32 70-101 7-40 (256)
219 PF02826 2-Hacid_dh_C: D-isome 78.3 23 0.0005 27.2 8.7 105 70-197 37-143 (178)
220 PF13561 adh_short_C2: Enoyl-( 78.3 12 0.00027 29.8 7.4 48 76-123 4-53 (241)
221 PRK06114 short chain dehydroge 78.2 29 0.00062 27.8 9.6 55 69-123 9-65 (254)
222 PRK07074 short chain dehydroge 78.1 32 0.0007 27.4 9.9 32 69-100 3-34 (257)
223 PRK07067 sorbitol dehydrogenas 78.1 33 0.00072 27.4 10.1 32 69-100 7-38 (257)
224 PRK07806 short chain dehydroge 78.0 32 0.0007 27.2 14.3 55 69-123 7-63 (248)
225 PRK05854 short chain dehydroge 78.0 30 0.00065 29.0 10.0 33 69-101 15-47 (313)
226 PRK06179 short chain dehydroge 77.8 24 0.00052 28.5 9.1 33 69-101 5-37 (270)
227 cd08239 THR_DH_like L-threonin 77.7 31 0.00067 29.0 10.0 56 61-120 157-213 (339)
228 PRK07856 short chain dehydroge 77.7 31 0.00068 27.5 9.7 33 69-101 7-39 (252)
229 PRK10309 galactitol-1-phosphat 77.3 35 0.00075 28.8 10.3 56 61-119 154-209 (347)
230 PRK09242 tropinone reductase; 77.3 35 0.00077 27.3 10.8 32 69-100 10-41 (257)
231 PLN02740 Alcohol dehydrogenase 77.2 35 0.00075 29.5 10.4 57 61-120 192-248 (381)
232 COG1064 AdhP Zn-dependent alco 77.2 20 0.00043 31.0 8.5 61 59-123 158-218 (339)
233 PRK05786 fabG 3-ketoacyl-(acyl 77.1 19 0.00042 28.3 8.3 34 69-102 6-39 (238)
234 cd08288 MDR_yhdh Yhdh putative 77.0 22 0.00047 29.5 8.8 50 67-119 146-195 (324)
235 cd08291 ETR_like_1 2-enoyl thi 76.9 25 0.00053 29.4 9.2 50 70-122 145-195 (324)
236 TIGR00692 tdh L-threonine 3-de 76.8 25 0.00055 29.5 9.3 52 65-119 159-210 (340)
237 PRK05396 tdh L-threonine 3-deh 76.8 22 0.00047 29.9 8.9 52 66-120 162-213 (341)
238 cd08243 quinone_oxidoreductase 76.7 40 0.00086 27.6 11.1 55 63-120 138-192 (320)
239 cd05282 ETR_like 2-enoyl thioe 76.7 34 0.00073 28.2 9.9 54 61-117 132-185 (323)
240 KOG0024 Sorbitol dehydrogenase 76.7 31 0.00068 29.7 9.4 63 58-123 160-222 (354)
241 PRK06180 short chain dehydroge 76.7 36 0.00078 27.7 9.9 32 69-100 5-36 (277)
242 PRK12828 short chain dehydroge 76.5 33 0.00071 26.8 9.4 55 69-123 8-63 (239)
243 PRK08220 2,3-dihydroxybenzoate 76.4 36 0.00079 27.0 10.0 34 69-102 9-42 (252)
244 cd08231 MDR_TM0436_like Hypoth 76.3 47 0.001 28.2 11.9 54 62-119 172-226 (361)
245 PRK07889 enoyl-(acyl carrier p 76.2 39 0.00085 27.2 10.1 31 69-99 8-40 (256)
246 PF02887 PK_C: Pyruvate kinase 76.0 8.1 0.00018 27.6 5.2 40 163-208 7-46 (117)
247 TIGR01751 crot-CoA-red crotony 75.9 23 0.0005 30.7 9.0 56 63-121 185-240 (398)
248 cd08300 alcohol_DH_class_III c 75.9 34 0.00075 29.3 10.0 57 61-120 180-236 (368)
249 cd08246 crotonyl_coA_red croto 75.9 13 0.00029 32.1 7.4 55 63-120 189-243 (393)
250 PLN02623 pyruvate kinase 75.8 52 0.0011 30.6 11.3 117 84-208 368-506 (581)
251 cd08242 MDR_like Medium chain 75.8 25 0.00055 29.1 8.9 57 60-120 148-204 (319)
252 PRK06482 short chain dehydroge 75.8 35 0.00075 27.7 9.6 32 70-101 4-35 (276)
253 PRK07201 short chain dehydroge 75.7 28 0.00061 32.3 10.0 33 69-101 372-404 (657)
254 PRK12939 short chain dehydroge 75.6 24 0.00053 27.9 8.5 55 69-123 8-63 (250)
255 PRK07454 short chain dehydroge 75.5 25 0.00053 27.9 8.5 71 69-139 7-79 (241)
256 PRK06348 aspartate aminotransf 75.3 53 0.0012 28.3 11.8 85 70-155 90-176 (384)
257 PRK06057 short chain dehydroge 75.3 40 0.00088 26.9 11.2 32 69-100 8-39 (255)
258 PRK06172 short chain dehydroge 75.1 25 0.00054 28.1 8.5 55 69-123 8-63 (253)
259 PRK08267 short chain dehydroge 75.1 39 0.00085 27.1 9.7 31 70-100 3-33 (260)
260 cd08301 alcohol_DH_plants Plan 74.9 43 0.00094 28.6 10.3 57 61-120 181-237 (369)
261 cd06324 PBP1_ABC_sugar_binding 74.9 47 0.001 27.5 18.4 42 163-207 192-237 (305)
262 COG0623 FabI Enoyl-[acyl-carri 74.9 23 0.0005 29.0 7.8 67 110-183 27-93 (259)
263 PRK08416 7-alpha-hydroxysteroi 74.8 43 0.00092 27.0 11.2 32 69-100 9-40 (260)
264 PRK12771 putative glutamate sy 74.8 8.1 0.00018 35.5 6.0 52 70-121 138-207 (564)
265 PRK09134 short chain dehydroge 74.5 36 0.00078 27.3 9.3 55 69-123 10-66 (258)
266 PRK12827 short chain dehydroge 74.3 41 0.00088 26.5 11.1 32 69-100 7-38 (249)
267 PF00185 OTCace: Aspartate/orn 74.1 15 0.00032 27.9 6.4 46 77-122 12-65 (158)
268 cd05286 QOR2 Quinone oxidoredu 73.8 46 0.001 26.9 10.7 56 62-120 131-186 (320)
269 cd05288 PGDH Prostaglandin deh 73.5 51 0.0011 27.3 11.1 53 62-117 140-193 (329)
270 PRK12809 putative oxidoreducta 73.5 26 0.00056 32.9 9.1 53 69-121 310-380 (639)
271 cd08258 Zn_ADH4 Alcohol dehydr 73.5 52 0.0011 27.3 10.5 54 62-117 159-212 (306)
272 cd08250 Mgc45594_like Mgc45594 73.4 51 0.0011 27.3 11.4 55 62-119 134-188 (329)
273 PF02254 TrkA_N: TrkA-N domain 73.4 28 0.0006 24.2 13.2 45 73-120 2-46 (116)
274 PRK12745 3-ketoacyl-(acyl-carr 73.3 40 0.00086 26.8 9.2 70 70-139 4-76 (256)
275 PRK08945 putative oxoacyl-(acy 73.3 44 0.00096 26.5 10.3 34 68-101 12-45 (247)
276 PRK14030 glutamate dehydrogena 73.2 26 0.00057 31.4 8.6 52 48-99 207-258 (445)
277 cd05188 MDR Medium chain reduc 73.0 45 0.00097 26.4 9.7 55 62-120 129-183 (271)
278 PRK05876 short chain dehydroge 72.9 30 0.00066 28.3 8.6 72 69-140 7-80 (275)
279 PRK06484 short chain dehydroge 72.9 52 0.0011 29.6 10.7 32 68-99 5-36 (520)
280 PRK06128 oxidoreductase; Provi 72.8 48 0.001 27.5 9.8 71 69-139 56-130 (300)
281 PRK07024 short chain dehydroge 72.8 47 0.001 26.6 9.7 32 69-100 3-34 (257)
282 TIGR02824 quinone_pig3 putativ 72.7 51 0.0011 26.9 10.8 57 60-119 132-188 (325)
283 PRK08690 enoyl-(acyl carrier p 72.7 49 0.0011 26.7 10.0 71 69-140 7-81 (261)
284 cd00401 AdoHcyase S-adenosyl-L 72.5 18 0.00038 32.2 7.3 53 63-119 197-249 (413)
285 PRK08017 oxidoreductase; Provi 72.4 47 0.001 26.4 9.5 51 70-123 4-54 (256)
286 TIGR03206 benzo_BadH 2-hydroxy 72.3 29 0.00064 27.4 8.2 56 69-124 4-60 (250)
287 PRK06124 gluconate 5-dehydroge 72.3 30 0.00066 27.6 8.3 55 68-122 11-66 (256)
288 PRK12824 acetoacetyl-CoA reduc 72.3 46 0.00099 26.2 10.5 32 70-101 4-35 (245)
289 PRK07792 fabG 3-ketoacyl-(acyl 72.2 35 0.00075 28.5 8.9 56 69-124 13-70 (306)
290 cd05211 NAD_bind_Glu_Leu_Phe_V 72.2 23 0.0005 28.4 7.4 54 50-103 4-57 (217)
291 PRK07890 short chain dehydroge 72.0 31 0.00068 27.5 8.3 55 69-123 6-61 (258)
292 PRK10083 putative oxidoreducta 71.8 55 0.0012 27.3 10.1 58 60-120 153-211 (339)
293 cd08269 Zn_ADH9 Alcohol dehydr 71.8 54 0.0012 26.8 11.2 55 61-119 123-178 (312)
294 cd08278 benzyl_alcohol_DH Benz 71.7 60 0.0013 27.7 10.4 56 62-120 181-236 (365)
295 PRK12429 3-hydroxybutyrate deh 71.7 37 0.0008 26.9 8.7 55 69-123 5-60 (258)
296 cd08284 FDH_like_2 Glutathione 71.7 53 0.0011 27.5 10.0 53 63-118 163-215 (344)
297 cd05313 NAD_bind_2_Glu_DH NAD( 71.5 25 0.00053 29.1 7.5 52 49-100 18-69 (254)
298 TIGR02095 glgA glycogen/starch 71.5 45 0.00097 29.7 9.9 30 75-104 17-46 (473)
299 PRK06949 short chain dehydroge 71.4 28 0.00061 27.7 7.9 34 68-101 9-42 (258)
300 PRK06484 short chain dehydroge 71.4 63 0.0014 29.0 10.9 33 68-100 269-301 (520)
301 PRK07035 short chain dehydroge 71.3 36 0.00078 27.1 8.5 71 69-139 9-81 (252)
302 PRK12779 putative bifunctional 71.2 28 0.0006 34.4 9.0 32 69-100 306-337 (944)
303 PRK08159 enoyl-(acyl carrier p 71.1 56 0.0012 26.7 10.0 31 69-99 11-43 (272)
304 cd08267 MDR1 Medium chain dehy 71.1 36 0.00078 27.8 8.7 52 62-117 138-189 (319)
305 PRK07370 enoyl-(acyl carrier p 71.0 54 0.0012 26.5 11.1 31 69-99 7-39 (258)
306 PF13460 NAD_binding_10: NADH( 70.9 19 0.0004 27.2 6.4 32 72-103 2-33 (183)
307 PRK06500 short chain dehydroge 70.5 46 0.001 26.2 9.0 52 69-122 7-58 (249)
308 cd08253 zeta_crystallin Zeta-c 70.3 57 0.0012 26.5 10.6 54 63-119 140-193 (325)
309 PLN00175 aminotransferase fami 70.2 76 0.0016 27.8 11.7 84 71-155 117-201 (413)
310 cd08261 Zn_ADH7 Alcohol dehydr 70.1 64 0.0014 27.0 10.5 53 61-117 153-205 (337)
311 PRK07814 short chain dehydroge 70.1 36 0.00077 27.5 8.3 54 69-122 11-65 (263)
312 TIGR02818 adh_III_F_hyde S-(hy 70.0 70 0.0015 27.4 15.2 57 61-120 179-235 (368)
313 PRK11706 TDP-4-oxo-6-deoxy-D-g 70.0 42 0.00092 28.9 9.1 55 70-124 47-101 (375)
314 cd05279 Zn_ADH1 Liver alcohol 69.8 67 0.0014 27.4 10.3 54 61-117 177-230 (365)
315 cd08249 enoyl_reductase_like e 69.7 37 0.00081 28.6 8.6 49 66-118 153-201 (339)
316 cd08298 CAD2 Cinnamyl alcohol 69.7 35 0.00076 28.3 8.4 54 61-118 161-214 (329)
317 PRK02610 histidinol-phosphate 69.7 35 0.00076 29.4 8.6 86 70-155 92-182 (374)
318 PRK09422 ethanol-active dehydr 69.6 65 0.0014 26.8 10.1 56 61-120 156-212 (338)
319 cd08248 RTN4I1 Human Reticulon 69.5 35 0.00076 28.6 8.4 47 68-118 163-209 (350)
320 PRK08264 short chain dehydroge 69.3 27 0.00059 27.5 7.3 33 69-101 7-40 (238)
321 PLN02342 ornithine carbamoyltr 69.3 55 0.0012 28.4 9.5 61 61-122 188-251 (348)
322 PLN02827 Alcohol dehydrogenase 69.2 48 0.001 28.7 9.3 56 61-119 187-242 (378)
323 PRK06077 fabG 3-ketoacyl-(acyl 69.1 35 0.00077 27.0 8.0 55 69-123 7-63 (252)
324 PRK07984 enoyl-(acyl carrier p 69.1 61 0.0013 26.4 10.5 31 69-99 7-39 (262)
325 PRK08213 gluconate 5-dehydroge 69.0 41 0.00089 26.9 8.4 56 69-124 13-69 (259)
326 PRK08306 dipicolinate synthase 68.8 56 0.0012 27.4 9.4 47 70-119 153-199 (296)
327 PRK09147 succinyldiaminopimela 68.8 77 0.0017 27.4 12.7 79 43-123 64-146 (396)
328 PRK07677 short chain dehydroge 68.5 42 0.00092 26.7 8.4 54 69-122 2-56 (252)
329 cd08245 CAD Cinnamyl alcohol d 68.5 50 0.0011 27.4 9.1 54 63-120 158-211 (330)
330 PRK12744 short chain dehydroge 68.3 44 0.00096 26.7 8.5 70 69-138 9-84 (257)
331 PF12000 Glyco_trans_4_3: Gkyc 68.2 14 0.0003 28.6 5.1 41 162-208 55-95 (171)
332 COG0399 WecE Predicted pyridox 68.2 41 0.00089 29.5 8.6 94 70-164 50-145 (374)
333 cd08244 MDR_enoyl_red Possible 68.1 67 0.0014 26.4 11.1 56 60-118 135-190 (324)
334 cd08259 Zn_ADH5 Alcohol dehydr 67.8 58 0.0013 26.8 9.3 51 63-116 158-208 (332)
335 PLN02702 L-idonate 5-dehydroge 67.7 61 0.0013 27.5 9.6 57 61-120 175-231 (364)
336 TIGR02817 adh_fam_1 zinc-bindi 67.7 49 0.0011 27.5 8.9 49 68-119 149-198 (336)
337 PRK08263 short chain dehydroge 67.6 65 0.0014 26.1 9.8 32 69-100 4-35 (275)
338 PRK15481 transcriptional regul 67.6 69 0.0015 28.1 10.1 82 71-155 143-226 (431)
339 cd05281 TDH Threonine dehydrog 67.5 45 0.00099 28.0 8.7 51 66-119 162-212 (341)
340 TIGR01316 gltA glutamate synth 67.5 25 0.00053 31.4 7.3 51 70-120 273-328 (449)
341 PRK06702 O-acetylhomoserine am 67.2 78 0.0017 28.3 10.3 79 71-154 78-160 (432)
342 PRK08415 enoyl-(acyl carrier p 67.1 69 0.0015 26.2 11.1 32 69-100 6-39 (274)
343 PRK09072 short chain dehydroge 67.0 44 0.00095 26.9 8.2 33 69-101 6-38 (263)
344 cd08290 ETR 2-enoyl thioester 67.0 47 0.001 27.7 8.7 58 63-120 142-200 (341)
345 COG1167 ARO8 Transcriptional r 66.7 47 0.001 29.8 9.0 83 71-155 157-241 (459)
346 TIGR01831 fabG_rel 3-oxoacyl-( 66.6 48 0.001 26.0 8.3 52 72-123 2-55 (239)
347 TIGR02823 oxido_YhdH putative 66.4 50 0.0011 27.3 8.7 50 65-117 142-192 (323)
348 PRK01077 cobyrinic acid a,c-di 66.4 98 0.0021 27.7 11.6 45 164-209 106-151 (451)
349 PRK09257 aromatic amino acid a 66.4 87 0.0019 27.1 10.9 82 40-123 65-149 (396)
350 cd05278 FDH_like Formaldehyde 66.3 55 0.0012 27.4 9.0 55 61-118 161-215 (347)
351 PRK03692 putative UDP-N-acetyl 66.2 52 0.0011 27.0 8.4 94 82-186 70-169 (243)
352 PF01262 AlaDh_PNT_C: Alanine 66.2 27 0.00059 26.5 6.4 50 70-122 21-70 (168)
353 cd05280 MDR_yhdh_yhfp Yhdh and 66.1 64 0.0014 26.5 9.3 47 70-119 149-195 (325)
354 cd08251 polyketide_synthase po 66.0 69 0.0015 25.8 10.9 54 61-117 114-167 (303)
355 PRK11658 UDP-4-amino-4-deoxy-L 65.6 59 0.0013 28.2 9.2 53 71-123 50-102 (379)
356 PF07279 DUF1442: Protein of u 65.5 45 0.00097 26.9 7.6 47 70-116 43-94 (218)
357 PRK07904 short chain dehydroge 65.5 64 0.0014 25.9 8.9 54 69-122 9-66 (253)
358 TIGR03538 DapC_gpp succinyldia 65.3 90 0.002 26.9 12.8 114 40-155 60-179 (393)
359 PRK09291 short chain dehydroge 65.0 28 0.0006 27.7 6.7 33 69-101 3-35 (257)
360 PRK05855 short chain dehydroge 65.0 76 0.0016 28.6 10.1 54 69-122 316-370 (582)
361 cd08299 alcohol_DH_class_I_II_ 64.9 91 0.002 26.8 10.5 54 61-117 184-237 (373)
362 PTZ00079 NADP-specific glutama 64.9 34 0.00074 30.8 7.5 54 49-102 217-270 (454)
363 cd05289 MDR_like_2 alcohol deh 64.8 73 0.0016 25.7 9.8 51 62-116 139-189 (309)
364 PRK05565 fabG 3-ketoacyl-(acyl 64.7 58 0.0013 25.5 8.4 55 69-123 6-62 (247)
365 PRK07825 short chain dehydroge 64.7 74 0.0016 25.7 11.0 32 69-100 6-37 (273)
366 PF08659 KR: KR domain; Inter 64.6 41 0.00089 25.8 7.3 71 70-140 2-78 (181)
367 PRK06113 7-alpha-hydroxysteroi 64.5 57 0.0012 26.1 8.4 54 69-122 12-66 (255)
368 cd05284 arabinose_DH_like D-ar 64.5 61 0.0013 27.0 8.9 52 64-119 164-216 (340)
369 TIGR02379 ECA_wecE TDP-4-keto- 64.4 55 0.0012 28.4 8.7 55 70-124 47-101 (376)
370 PRK05447 1-deoxy-D-xylulose 5- 64.3 1E+02 0.0022 27.2 13.0 110 70-197 3-114 (385)
371 TIGR01963 PHB_DH 3-hydroxybuty 64.3 53 0.0012 25.9 8.2 54 70-123 3-57 (255)
372 cd08264 Zn_ADH_like2 Alcohol d 64.3 50 0.0011 27.3 8.3 38 62-99 157-194 (325)
373 PRK13982 bifunctional SbtC-lik 64.3 11 0.00024 34.1 4.4 26 76-101 280-305 (475)
374 CHL00194 ycf39 Ycf39; Provisio 64.2 31 0.00067 28.9 7.0 32 70-101 2-33 (317)
375 PLN02583 cinnamoyl-CoA reducta 64.1 56 0.0012 27.0 8.5 34 68-101 6-39 (297)
376 PRK06997 enoyl-(acyl carrier p 64.1 76 0.0016 25.6 9.8 31 69-99 7-39 (260)
377 cd05285 sorbitol_DH Sorbitol d 64.0 79 0.0017 26.5 9.5 57 60-119 155-211 (343)
378 PRK11891 aspartate carbamoyltr 64.0 40 0.00086 30.1 7.8 45 78-122 253-300 (429)
379 PRK06101 short chain dehydroge 63.9 64 0.0014 25.6 8.5 51 70-123 3-55 (240)
380 PRK06398 aldose dehydrogenase; 63.9 76 0.0016 25.5 10.0 33 69-101 7-39 (258)
381 PRK09186 flagellin modificatio 63.8 72 0.0016 25.3 10.1 33 68-100 4-36 (256)
382 COG0240 GpsA Glycerol-3-phosph 63.8 97 0.0021 26.7 11.2 31 71-101 3-33 (329)
383 TIGR03590 PseG pseudaminic aci 63.7 84 0.0018 26.0 9.9 81 34-123 2-88 (279)
384 PRK08192 aspartate carbamoyltr 63.7 44 0.00095 28.8 7.8 45 78-122 171-218 (338)
385 cd08260 Zn_ADH6 Alcohol dehydr 63.6 88 0.0019 26.2 10.5 51 62-116 160-210 (345)
386 PRK06171 sorbitol-6-phosphate 63.6 76 0.0016 25.4 9.5 33 69-101 10-42 (266)
387 PRK07985 oxidoreductase; Provi 63.4 65 0.0014 26.6 8.8 55 69-123 50-107 (294)
388 PF11814 DUF3335: Peptidase_C3 63.4 23 0.0005 28.3 5.6 33 70-102 43-77 (207)
389 PRK06505 enoyl-(acyl carrier p 63.3 81 0.0018 25.7 9.3 71 69-140 8-82 (271)
390 cd08282 PFDH_like Pseudomonas 63.2 65 0.0014 27.6 9.0 55 61-118 170-224 (375)
391 PRK06354 pyruvate kinase; Prov 63.1 1.3E+02 0.0029 28.1 11.9 120 83-208 268-407 (590)
392 PRK07550 hypothetical protein; 63.0 99 0.0021 26.6 12.5 76 44-123 67-143 (386)
393 TIGR03801 asp_4_decarbox aspar 62.9 99 0.0021 28.4 10.3 53 71-123 157-215 (521)
394 PRK06953 short chain dehydroge 62.9 71 0.0015 24.9 9.8 52 70-124 3-54 (222)
395 PRK00779 ornithine carbamoyltr 62.6 44 0.00096 28.3 7.6 61 61-122 146-209 (304)
396 PRK12936 3-ketoacyl-(acyl-carr 62.5 74 0.0016 24.9 11.0 30 69-98 7-36 (245)
397 PRK08642 fabG 3-ketoacyl-(acyl 62.5 73 0.0016 25.1 8.7 53 69-122 6-58 (253)
398 cd08254 hydroxyacyl_CoA_DH 6-h 62.1 90 0.0019 25.8 10.5 56 62-121 160-215 (338)
399 PRK12859 3-ketoacyl-(acyl-carr 61.8 59 0.0013 26.1 8.1 72 69-140 7-93 (256)
400 cd08286 FDH_like_ADH2 formalde 61.7 70 0.0015 26.8 8.8 52 62-117 161-213 (345)
401 PRK08177 short chain dehydroge 61.6 76 0.0016 24.8 9.3 34 70-103 3-36 (225)
402 PRK12775 putative trifunctiona 61.5 73 0.0016 31.8 9.8 32 70-101 431-462 (1006)
403 PRK12810 gltD glutamate syntha 61.5 46 0.00099 29.8 7.9 51 70-120 144-212 (471)
404 TIGR01318 gltD_gamma_fam gluta 61.5 39 0.00085 30.3 7.5 51 70-120 142-210 (467)
405 PRK08251 short chain dehydroge 61.3 72 0.0016 25.2 8.4 71 69-139 3-77 (248)
406 PLN02527 aspartate carbamoyltr 61.3 79 0.0017 26.8 8.9 45 78-122 163-210 (306)
407 COG2518 Pcm Protein-L-isoaspar 61.3 50 0.0011 26.5 7.2 100 64-185 69-172 (209)
408 PRK06198 short chain dehydroge 61.3 82 0.0018 25.1 9.4 55 69-123 7-63 (260)
409 cd00288 Pyruvate_Kinase Pyruva 61.3 1.3E+02 0.0028 27.4 12.4 119 84-208 264-405 (480)
410 TIGR03845 sulfopyru_alph sulfo 61.0 70 0.0015 24.2 10.2 76 70-146 60-149 (157)
411 COG0026 PurK Phosphoribosylami 60.9 17 0.00037 31.7 4.8 32 71-102 3-34 (375)
412 PRK14031 glutamate dehydrogena 60.9 44 0.00096 30.0 7.5 53 48-100 207-259 (444)
413 cd08272 MDR6 Medium chain dehy 60.7 91 0.002 25.4 10.6 55 61-119 138-192 (326)
414 PRK07069 short chain dehydroge 60.6 82 0.0018 24.8 9.8 31 71-101 2-32 (251)
415 cd06313 PBP1_ABC_sugar_binding 60.5 88 0.0019 25.2 9.6 42 163-207 173-215 (272)
416 PRK09414 glutamate dehydrogena 60.5 44 0.00096 30.0 7.5 53 48-100 211-263 (445)
417 PF04122 CW_binding_2: Putativ 60.4 49 0.0011 22.2 9.8 79 44-127 4-85 (92)
418 PRK06196 oxidoreductase; Provi 60.4 99 0.0021 25.7 10.3 32 69-100 27-58 (315)
419 PF13478 XdhC_C: XdhC Rossmann 60.3 15 0.00032 27.3 3.8 31 72-102 1-31 (136)
420 PRK07576 short chain dehydroge 60.3 77 0.0017 25.6 8.5 54 69-122 10-64 (264)
421 cd08241 QOR1 Quinone oxidoredu 60.1 91 0.002 25.2 10.6 54 62-118 134-187 (323)
422 PRK06924 short chain dehydroge 60.0 83 0.0018 24.9 8.6 52 70-122 3-54 (251)
423 KOG0634 Aromatic amino acid am 60.0 50 0.0011 29.5 7.5 51 73-124 127-178 (472)
424 PF02737 3HCDH_N: 3-hydroxyacy 60.0 17 0.00037 28.2 4.3 30 72-101 2-31 (180)
425 TIGR00379 cobB cobyrinic acid 59.8 1.3E+02 0.0028 26.9 12.4 45 164-209 102-147 (449)
426 COG0159 TrpA Tryptophan syntha 59.8 1E+02 0.0022 25.7 9.0 69 49-122 108-178 (265)
427 cd06059 Tubulin The tubulin su 59.7 16 0.00035 31.9 4.6 21 189-209 108-128 (382)
428 PRK07060 short chain dehydroge 59.7 54 0.0012 25.8 7.4 53 69-124 10-63 (245)
429 KOG1197 Predicted quinone oxid 59.6 96 0.0021 26.1 8.6 55 60-117 139-193 (336)
430 PRK14805 ornithine carbamoyltr 59.6 39 0.00085 28.6 6.7 61 61-122 141-207 (302)
431 PRK12831 putative oxidoreducta 59.5 42 0.00092 30.1 7.3 51 70-120 282-337 (464)
432 cd07766 DHQ_Fe-ADH Dehydroquin 59.5 1.1E+02 0.0023 25.9 11.3 12 175-187 79-90 (332)
433 PRK13376 pyrB bifunctional asp 59.3 50 0.0011 30.4 7.7 45 78-122 186-233 (525)
434 cd08262 Zn_ADH8 Alcohol dehydr 59.1 1E+02 0.0023 25.6 9.4 55 61-118 155-209 (341)
435 PRK06247 pyruvate kinase; Prov 59.0 1.4E+02 0.0031 27.1 12.8 119 84-208 260-399 (476)
436 cd08240 6_hydroxyhexanoate_dh_ 58.7 1.1E+02 0.0024 25.7 10.9 52 65-119 173-224 (350)
437 PRK07102 short chain dehydroge 58.7 89 0.0019 24.6 9.0 54 70-123 3-58 (243)
438 PRK08339 short chain dehydroge 58.5 74 0.0016 25.7 8.1 32 69-100 9-40 (263)
439 TIGR02685 pter_reduc_Leis pter 58.3 97 0.0021 24.9 10.8 31 70-100 3-33 (267)
440 cd08279 Zn_ADH_class_III Class 58.1 1.2E+02 0.0025 25.8 10.9 54 61-117 176-229 (363)
441 PRK13886 conjugal transfer pro 58.1 1E+02 0.0023 25.2 13.2 122 81-206 20-150 (241)
442 cd08270 MDR4 Medium chain dehy 58.1 50 0.0011 26.9 7.1 48 67-117 132-179 (305)
443 PLN02253 xanthoxin dehydrogena 58.0 69 0.0015 26.0 7.9 32 69-100 19-50 (280)
444 cd05283 CAD1 Cinnamyl alcohol 58.0 48 0.001 27.8 7.1 51 65-119 167-217 (337)
445 PRK08324 short chain dehydroge 57.9 1.7E+02 0.0037 27.6 13.7 33 68-100 422-454 (681)
446 PLN02586 probable cinnamyl alc 57.9 64 0.0014 27.6 7.9 55 63-120 179-233 (360)
447 PF01494 FAD_binding_3: FAD bi 57.9 16 0.00034 30.5 4.1 32 70-101 2-33 (356)
448 cd00616 AHBA_syn 3-amino-5-hyd 57.9 87 0.0019 26.2 8.7 53 72-124 36-88 (352)
449 PRK07023 short chain dehydroge 57.8 61 0.0013 25.6 7.4 50 70-123 3-52 (243)
450 PRK12747 short chain dehydroge 57.7 67 0.0015 25.5 7.7 54 69-122 5-60 (252)
451 PRK09730 putative NAD(P)-bindi 57.6 91 0.002 24.4 9.0 54 70-123 3-58 (247)
452 PRK07775 short chain dehydroge 57.5 94 0.002 25.2 8.6 54 70-123 12-66 (274)
453 PLN02461 Probable pyruvate kin 57.5 1.6E+02 0.0034 27.1 12.7 120 83-208 283-425 (511)
454 PRK09206 pyruvate kinase; Prov 57.4 1.5E+02 0.0033 26.9 11.8 119 84-208 263-400 (470)
455 PRK13984 putative oxidoreducta 57.4 47 0.001 30.8 7.4 51 70-120 284-352 (604)
456 TIGR01830 3oxo_ACP_reduc 3-oxo 57.3 85 0.0018 24.4 8.1 52 72-123 2-55 (239)
457 PRK04870 histidinol-phosphate 57.2 77 0.0017 26.9 8.3 83 71-154 83-166 (356)
458 TIGR01829 AcAcCoA_reduct aceto 57.1 68 0.0015 25.1 7.6 54 70-123 2-57 (242)
459 cd08238 sorbose_phosphate_red 56.9 53 0.0012 28.7 7.4 51 62-114 170-222 (410)
460 PRK06836 aspartate aminotransf 56.9 1.3E+02 0.0028 26.0 10.7 83 71-154 98-181 (394)
461 PRK14807 histidinol-phosphate 56.8 76 0.0016 27.0 8.2 83 71-154 78-161 (351)
462 PLN02178 cinnamyl-alcohol dehy 56.8 41 0.00088 29.1 6.6 52 66-120 177-228 (375)
463 COG2085 Predicted dinucleotide 56.7 1E+02 0.0022 24.8 10.2 78 70-149 2-92 (211)
464 PRK06847 hypothetical protein; 56.7 20 0.00043 30.6 4.6 31 70-100 5-35 (375)
465 PRK08912 hypothetical protein; 56.6 1.3E+02 0.0028 25.9 12.9 78 43-123 62-140 (387)
466 PRK06123 short chain dehydroge 56.5 67 0.0015 25.3 7.5 54 70-123 4-59 (248)
467 TIGR00658 orni_carb_tr ornithi 56.5 75 0.0016 26.9 7.9 61 61-122 142-208 (304)
468 PF13580 SIS_2: SIS domain; PD 56.5 28 0.00062 25.5 4.8 35 65-99 101-137 (138)
469 cd08276 MDR7 Medium chain dehy 56.4 1.1E+02 0.0024 25.1 11.1 54 62-119 155-208 (336)
470 PRK05599 hypothetical protein; 56.1 1E+02 0.0022 24.6 10.2 30 70-100 2-31 (246)
471 cd08265 Zn_ADH3 Alcohol dehydr 56.1 87 0.0019 27.0 8.6 54 63-119 199-252 (384)
472 PRK08068 transaminase; Reviewe 55.9 1.3E+02 0.0029 25.8 11.0 77 44-123 70-147 (389)
473 PLN02450 1-aminocyclopropane-1 55.9 1.5E+02 0.0033 26.5 11.7 77 42-123 84-165 (468)
474 COG1797 CobB Cobyrinic acid a, 55.8 30 0.00065 30.9 5.5 45 165-209 104-148 (451)
475 cd08550 GlyDH-like Glycerol_de 55.8 69 0.0015 27.5 7.8 11 175-186 78-88 (349)
476 PRK05957 aspartate aminotransf 55.7 70 0.0015 27.6 7.9 54 70-124 90-143 (389)
477 PRK10490 sensor protein KdpD; 55.5 1.7E+02 0.0038 28.7 11.2 107 70-183 252-375 (895)
478 smart00822 PKS_KR This enzymat 55.5 77 0.0017 22.9 8.7 54 70-123 2-60 (180)
479 PRK09423 gldA glycerol dehydro 55.3 89 0.0019 27.0 8.4 17 85-101 22-38 (366)
480 cd08235 iditol_2_DH_like L-idi 55.1 1.2E+02 0.0027 25.2 11.3 55 61-118 159-213 (343)
481 PRK08153 histidinol-phosphate 54.9 1.4E+02 0.003 25.6 9.6 83 71-154 86-168 (369)
482 PRK09853 putative selenate red 54.9 53 0.0012 32.7 7.5 51 70-120 540-608 (1019)
483 PRK10624 L-1,2-propanediol oxi 54.7 52 0.0011 28.7 6.9 21 165-188 80-100 (382)
484 PRK07366 succinyldiaminopimela 54.6 1.4E+02 0.003 25.6 11.7 109 43-155 67-179 (388)
485 cd01011 nicotinamidase Nicotin 54.5 79 0.0017 24.6 7.3 61 55-119 129-196 (196)
486 cd08177 MAR Maleylacetate redu 54.3 97 0.0021 26.4 8.4 13 174-187 77-89 (337)
487 PRK07324 transaminase; Validat 54.2 68 0.0015 27.6 7.5 82 71-154 82-166 (373)
488 cd08170 GlyDH Glycerol dehydro 54.1 65 0.0014 27.6 7.4 12 175-187 78-89 (351)
489 COG1433 Uncharacterized conser 54.1 83 0.0018 22.9 7.4 52 81-135 54-105 (121)
490 PTZ00387 epsilon tubulin; Prov 53.9 22 0.00047 32.1 4.5 65 145-209 91-170 (465)
491 PRK15407 lipopolysaccharide bi 53.9 1.5E+02 0.0032 26.5 9.7 55 70-124 79-141 (438)
492 KOG1210 Predicted 3-ketosphing 53.7 1.4E+02 0.003 25.7 8.8 34 70-103 35-68 (331)
493 PRK14804 ornithine carbamoyltr 53.5 65 0.0014 27.4 7.1 37 68-104 153-189 (311)
494 PRK12742 oxidoreductase; Provi 53.4 1.1E+02 0.0023 23.9 8.6 53 69-123 7-60 (237)
495 PRK05166 histidinol-phosphate 53.4 85 0.0018 26.9 8.0 83 71-154 90-172 (371)
496 PF02558 ApbA: Ketopantoate re 53.2 65 0.0014 23.5 6.4 46 73-122 2-47 (151)
497 PLN02477 glutamate dehydrogena 53.2 70 0.0015 28.4 7.4 54 49-102 186-239 (410)
498 TIGR03588 PseC UDP-4-keto-6-de 53.0 1.4E+02 0.003 25.7 9.3 50 72-123 47-98 (380)
499 cd08255 2-desacetyl-2-hydroxye 52.9 1.2E+02 0.0026 24.4 8.6 51 61-115 91-142 (277)
500 PRK05370 argininosuccinate syn 52.9 1.8E+02 0.0038 26.3 14.6 130 67-206 10-155 (447)
No 1
>PLN03013 cysteine synthase
Probab=100.00 E-value=2.5e-53 Score=368.07 Aligned_cols=204 Identities=65% Similarity=1.104 Sum_probs=192.1
Q ss_pred hhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHH
Q 028372 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA 85 (210)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA 85 (210)
.+++++.+.+++|||++++.++...+.+||+|+|++|||||||||++.+++..++++|.+.+|+.+||++|+||||+|+|
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 46788999999999999999887777899999999999999999999999999999999999877899999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHH
Q 028372 86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP 165 (210)
Q Consensus 86 ~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 165 (210)
++|+.+|+++++|||+++++.|+++|+.+||+|+.+++...++++.+.+++++++.+++||++||+|+.|+..||.|+|+
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987656778889999998887689999999999997789999999
Q ss_pred HHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 166 Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
||++|++++||+||+|+||||+++|++++||+.+|+++||+|..
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep 315 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEP 315 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEe
Confidence 99999977899999999999999999999999999999999863
No 2
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-53 Score=351.61 Aligned_cols=200 Identities=56% Similarity=0.920 Sum_probs=190.0
Q ss_pred hHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028372 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (210)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~ 87 (210)
++.+.+.+++|||+++.++....+++||+|+|++||+||.|||.+.+|+.+|+++|.++|| .+||++||||+|.+||+.
T Consensus 2 ~~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG-~tIVE~TSGNTGI~LA~v 80 (300)
T COG0031 2 YESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMV 80 (300)
T ss_pred ccchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCC-CEEEEcCCChHHHHHHHH
Confidence 3567888999999999999888789999999999999999999999999999999999999 579999999999999999
Q ss_pred HHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCC-HHHHHHHHHHHHHhCCC-eEEcCCCCCChhHHHHHHhHHH
Q 028372 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR-FEEILEKGEEILKKTPD-GYLLRQFENPANPKIHYETTGP 165 (210)
Q Consensus 88 a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~n~~~~~~g~~t~~~ 165 (210)
|+.+|+++++|||++++.+|++.|+.|||+|+.++...+ +..+.+++++++++.|+ .+|.+||+||+||.+||.|++.
T Consensus 81 aa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~ 160 (300)
T COG0031 81 AAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGP 160 (300)
T ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHH
Confidence 999999999999999999999999999999999998444 88899999999999988 7788899999999999999999
Q ss_pred HHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 166 Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
||++|+++++|++|+++|||||++|++++||+.+|++++|+|-
T Consensus 161 EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vd 203 (300)
T COG0031 161 EIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVD 203 (300)
T ss_pred HHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEEC
Confidence 9999998889999999999999999999999999999999984
No 3
>PLN02565 cysteine synthase
Probab=100.00 E-value=4.7e-53 Score=358.42 Aligned_cols=202 Identities=72% Similarity=1.173 Sum_probs=188.2
Q ss_pred hhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHH
Q 028372 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (210)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~ 86 (210)
..+.+.+.+++|||++++.++...+.+||+|+|++|||||||+|++.+++..+.++|.+.+|.+.||++|+||||+|+|+
T Consensus 5 ~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~ 84 (322)
T PLN02565 5 IAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAF 84 (322)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHH
Confidence 45678899999999999887666667999999999999999999999999999999988888778999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHH
Q 028372 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (210)
Q Consensus 87 ~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 166 (210)
+|+.+|++|++|||+++++.|+++|+.+||+|+.++...+++++.+.+++++++.+++||++||+|+.|+..||.|+|+|
T Consensus 85 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~E 164 (322)
T PLN02565 85 MAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPE 164 (322)
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875556788889999988876889999999999988899999999
Q ss_pred HHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 167 i~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
|++|+++.||+||+|+|+||+++|++.+||+.+|++|||+|.
T Consensus 165 i~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Ve 206 (322)
T PLN02565 165 IWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVE 206 (322)
T ss_pred HHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999997679999999999999999999999999999999985
No 4
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=2.8e-52 Score=350.34 Aligned_cols=200 Identities=46% Similarity=0.732 Sum_probs=186.9
Q ss_pred hhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHH
Q 028372 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (210)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~ 86 (210)
.++++.+.+++|||+++++++...|.+||+|+|++|||||||+|++.+++.++.++|.+.++ .+|+++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHH
Confidence 45778889999999999999887788999999999999999999999999999999987776 56999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHH
Q 028372 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (210)
Q Consensus 87 ~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 166 (210)
+|+.+|++|++|+|+++++.|++.|+.+||+|+.++...+++++.+.+++++++. +++|++||+|+.++..||.|+++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999997556888888899988876 789999999999988899999999
Q ss_pred HHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 167 i~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
|++|+++.+|+||+|+||||+++|++++||+.+|+++||+|.
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVe 201 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQ 201 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999997679999999999999999999999999999999985
No 5
>PLN00011 cysteine synthase
Probab=100.00 E-value=8.3e-52 Score=351.38 Aligned_cols=209 Identities=74% Similarity=1.162 Sum_probs=193.0
Q ss_pred CCchhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCch
Q 028372 1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNT 80 (210)
Q Consensus 1 ~~~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~ 80 (210)
|++-...++.+.+.+++|||+++++++...+.+||+|+|++|||||||+|++.+++..+.++|.+.|+.++||++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~ 80 (323)
T PLN00011 1 MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNT 80 (323)
T ss_pred CcchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChH
Confidence 67777788889999999999999998866667999999999999999999999999999999999888778999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHH
Q 028372 81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHY 160 (210)
Q Consensus 81 g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 160 (210)
|+|+|++|+.+|++|++|+|+++++.|+++++.+||+|+.++.+...++..+.+++++++.++++|++||+|+.++..||
T Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~ 160 (323)
T PLN00011 81 GIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHY 160 (323)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHH
Confidence 99999999999999999999999999999999999999999975445566778888888766789999999999987899
Q ss_pred HhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 161 ETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
.++++||++|+++.||+||+|+|||||++|++++||+.+|+++||||..
T Consensus 161 ~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~ 209 (323)
T PLN00011 161 RTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEP 209 (323)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEec
Confidence 9999999999966899999999999999999999999999999999964
No 6
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=6.2e-52 Score=356.61 Aligned_cols=204 Identities=55% Similarity=0.943 Sum_probs=190.1
Q ss_pred hhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHH
Q 028372 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA 85 (210)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA 85 (210)
++.+++.+.+++|||+++++++...|++||+|+|++|||||||+|++.+++.+++++|.+.||+++||++|+||||+|+|
T Consensus 48 ~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA 127 (368)
T PLN02556 48 KIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLA 127 (368)
T ss_pred hhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHH
Confidence 35678899999999999999987778999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHH
Q 028372 86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP 165 (210)
Q Consensus 86 ~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 165 (210)
++|+.+|++|++|+|+.++..|++.|+.+||+|+.++...+....++.+++++++.++++|++||+|+.++..||.++++
T Consensus 128 ~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~ 207 (368)
T PLN02556 128 FMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGP 207 (368)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986444557778888888888789999999999997679999999
Q ss_pred HHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 166 Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
||++|+.+.+|+||+|+|||||++|++++||+.+|+++||||..
T Consensus 208 EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep 251 (368)
T PLN02556 208 EIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEP 251 (368)
T ss_pred HHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEee
Confidence 99999866899999999999999999999999999999999964
No 7
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=2.8e-51 Score=343.41 Aligned_cols=196 Identities=46% Similarity=0.756 Sum_probs=182.7
Q ss_pred hhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHH
Q 028372 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (210)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~ 90 (210)
|.+.+++|||+++++++...|.+||+|+|++|||||||+|++.+++..+.++|.+.++ ++|+++|+||||+|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHH
Confidence 5667999999999999888888999999999999999999999999999999987776 569999999999999999999
Q ss_pred cCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHHh
Q 028372 91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD 170 (210)
Q Consensus 91 ~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 170 (210)
+|++|++|+|+++++.|+++|+.+||+|+.++.+.+++++.+.+++++++. +.+|++||+|+.++..||.|+++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999997556888888999998887 4468999999999877899999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 171 ~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
+++.+|+||+|+||||+++|++.+||+.+|++|||+|.
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Ve 197 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQ 197 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 97679999999999999999999999999999999985
No 8
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.1e-50 Score=341.36 Aligned_cols=197 Identities=57% Similarity=0.958 Sum_probs=183.9
Q ss_pred hccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHc
Q 028372 12 TELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91 (210)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~ 91 (210)
...+++|||++++.|+...|.+||+|+|++|||||||+|++.+++..+.++|.+.++ ++|+++|+||||+|+|++|+.+
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHc
Confidence 457899999999999988888999999999999999999999999999999987766 5699999999999999999999
Q ss_pred CCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHHhh
Q 028372 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDS 171 (210)
Q Consensus 92 g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~ 171 (210)
|++|++|||+++++.|+++|+.+||+|+.++++.+++++.+.+++++++.+++++++||+|+.++..||.+++.||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998656788999999998876578899999999988889999999999999
Q ss_pred CCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 172 GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 172 ~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
++.||+||+|+|+||+++|++.+||+.+|.++||+|..
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~ 198 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEP 198 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEec
Confidence 76799999999999999999999999999999999864
No 9
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-51 Score=344.77 Aligned_cols=199 Identities=26% Similarity=0.350 Sum_probs=185.7
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+++++...+.+|||++++.|++.+|++||+|+|++||+||||.||+++.++.+.+++.. ...||++|+||||+
T Consensus 11 ~i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQ 87 (347)
T COG1171 11 DILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQ 87 (347)
T ss_pred HHHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHH
Confidence 456688999999999999999999999999999999999999999999999999987644321 36699999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
++|++|+++|+|++||||.++|..|.+.++.|||+|+.++. +|+++...+++++++. ++.|++||++|+. ++||+|
T Consensus 88 GvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGT 163 (347)
T COG1171 88 GVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGT 163 (347)
T ss_pred HHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccH
Confidence 99999999999999999999999999999999999999996 4899999999999998 8999999999998 899999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
++.||++|+++.||+||||+|+||+++|++.++|...|+++||||.
T Consensus 164 i~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVE 209 (347)
T COG1171 164 IALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVE 209 (347)
T ss_pred HHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEe
Confidence 9999999996557999999999999999999999999999999985
No 10
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=3.9e-50 Score=337.93 Aligned_cols=196 Identities=57% Similarity=0.949 Sum_probs=179.9
Q ss_pred hccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHc
Q 028372 12 TELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91 (210)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~ 91 (210)
...+++|||+++++ ....|.+||+|+|++|||||||+|++.+++..+.++|.+.+| .+|+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHc
Confidence 46789999999998 556678999999999999999999999999999999987766 5699999999999999999999
Q ss_pred CCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCC-eEEcCCCCCChhHHHHHHhHHHHHHHh
Q 028372 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPD-GYLLRQFENPANPKIHYETTGPEIWQD 170 (210)
Q Consensus 92 g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~n~~~~~~g~~t~~~Ei~~q 170 (210)
|++|++|+|+++++.|++.|+.+||+|+.++++.++.++.+.+++++++.++ +++++||+|+.++..||.|++.||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999865556788889998888754 569999999998888999999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 171 ~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
++..||+||+|+|+||+++|++.+|++.+|++|||+|..
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~ 198 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEP 198 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEec
Confidence 976799999999999999999999999999999999963
No 11
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=8.4e-50 Score=340.24 Aligned_cols=201 Identities=49% Similarity=0.814 Sum_probs=180.4
Q ss_pred hhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHH
Q 028372 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (210)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~ 86 (210)
.++.+.+.+++|||+++++++...|.+||+|+|++|||||||+|++.+++..+.++|.+.++ .+|+++|+||||+|+|+
T Consensus 3 ~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~ 81 (330)
T PRK10717 3 IFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLAL 81 (330)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHH
Confidence 57788999999999999999988889999999999999999999999999999999987776 56999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCC------CHHHHHHHHHHHHHhCC-CeEEcCCCCCChhHHHH
Q 028372 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL------RFEEILEKGEEILKKTP-DGYLLRQFENPANPKIH 159 (210)
Q Consensus 87 ~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~------~~~~~~~~a~~~~~~~~-~~~~~~~~~n~~~~~~g 159 (210)
+|+.+|++|++|+|...++.|+++++.+||+|+.++... ..+.+.+.++++.++.+ +++|++||+||.++..|
T Consensus 82 ~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (330)
T PRK10717 82 VAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAH 161 (330)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHH
Confidence 999999999999999999999999999999999999631 12233444555544432 78999999999987789
Q ss_pred HHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 160 YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 160 ~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
|.|++.||++|++..+|+||+|+||||+++|++.+||+.+|+++||+|.
T Consensus 162 ~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Ve 210 (330)
T PRK10717 162 YETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLAD 210 (330)
T ss_pred HHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEc
Confidence 9999999999997679999999999999999999999999999999985
No 12
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=6.2e-50 Score=339.92 Aligned_cols=198 Identities=23% Similarity=0.315 Sum_probs=184.3
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..++++|...+++|||+++++++...|.+||+|+|++|||||||+|++.+++.++.++|. .++||++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~ 80 (322)
T PRK07476 5 DIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGR 80 (322)
T ss_pred HHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHH
Confidence 45778999999999999999999998888899999999999999999999999999998886 24599999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
|+|++|+.+|++|++|+|+++++.|++.|+.+||+|+.++. +++++.+.+.+++++. +++|++||+||.+ ..|++|
T Consensus 81 alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t 156 (322)
T PRK07476 81 ALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGT 156 (322)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhH
Confidence 99999999999999999999999999999999999999985 3788888899888876 7799999999998 688999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+++||++|++ ++|+||+|+|+||+++|++.+||..+|+++||+|..
T Consensus 157 ~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~ 202 (322)
T PRK07476 157 IGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSM 202 (322)
T ss_pred HHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 9999999994 699999999999999999999999999999999964
No 13
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=6.1e-50 Score=348.10 Aligned_cols=198 Identities=24% Similarity=0.341 Sum_probs=184.6
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+++++.+.+++|||+++++|+...|.+||+|+|++|||||||+|++.+.+..+.+++. .++||++|+||||+
T Consensus 6 ~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~ 81 (403)
T PRK08526 6 KIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQ 81 (403)
T ss_pred HHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHH
Confidence 56778999999999999999999998888999999999999999999999999998876553 36699999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
++|++|+.+|++|++|||+.++..|++.++.|||+|+.++. +++++...+++++++. +++|++||+|+.+ ++||+|
T Consensus 82 avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gt 157 (403)
T PRK08526 82 GVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGT 157 (403)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHH
Confidence 99999999999999999999999999999999999999985 5899999999998876 7899999999987 899999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
++.||++|+ +.+|+||+|+|+||+++|++.++|+.+|+++||||..
T Consensus 158 ia~EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep 203 (403)
T PRK08526 158 IALEMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGA 203 (403)
T ss_pred HHHHHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 999999999 4799999999999999999999999999999999963
No 14
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=1.2e-49 Score=347.62 Aligned_cols=198 Identities=26% Similarity=0.423 Sum_probs=184.3
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+++++.+.+++|||+++++|+...|.+||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+
T Consensus 8 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 83 (404)
T PRK08198 8 DIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQ 83 (404)
T ss_pred HHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHH
Confidence 45678999999999999999999998888999999999999999999999999999876553 36799999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
++|++|+.+|++|++|||++++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ..||+|
T Consensus 84 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t 159 (404)
T PRK08198 84 GVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDV-IAGQGT 159 (404)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHH
Confidence 99999999999999999999999999999999999999984 5899999999998886 7999999999998 789999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+|+||++|+ +++|+||+|+||||+++|++.+||+.+|+++||||..
T Consensus 160 ~a~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~ 205 (404)
T PRK08198 160 IGLEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQA 205 (404)
T ss_pred HHHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999999 4799999999999999999999999999999999963
No 15
>PLN02970 serine racemase
Probab=100.00 E-value=2.5e-49 Score=336.90 Aligned_cols=197 Identities=19% Similarity=0.230 Sum_probs=181.4
Q ss_pred hhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHH
Q 028372 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (210)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a 83 (210)
+..+.+++...+++|||+++++++...|.+||+|+|++|||||||+|++.+++..+.+++. .++||++|+||||.|
T Consensus 14 i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~a 89 (328)
T PLN02970 14 IREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAA 89 (328)
T ss_pred HHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHH
Confidence 4567888999999999999999988788899999999999999999999999999876553 367999999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhH
Q 028372 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (210)
Q Consensus 84 lA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 163 (210)
+|++|+.+|++|++|||+++++.|++.|+.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ..||+|+
T Consensus 90 lA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~-~~g~~t~ 165 (328)
T PLN02970 90 LALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRV-ISGQGTI 165 (328)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hhehHHH
Confidence 9999999999999999999999999999999999999996 4788888899988774 8999999999987 6799999
Q ss_pred HHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 164 ~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
++||++|++ .||+||+|+|+||+++|++++||+.+|+++||+|..
T Consensus 166 g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep 210 (328)
T PLN02970 166 ALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEP 210 (328)
T ss_pred HHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEE
Confidence 999999995 699999999999999999999999999999999853
No 16
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=5.3e-49 Score=340.87 Aligned_cols=201 Identities=37% Similarity=0.639 Sum_probs=175.1
Q ss_pred hhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHH
Q 028372 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (210)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~ 86 (210)
....+.+.+++|||++++.++...|.+||+|+|++|||||||||++.+++.++.++|.+.++ ..|+++||||||+|+|+
T Consensus 43 ~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~-g~VveaSSGN~g~alA~ 121 (423)
T PLN02356 43 PRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPG-GVVTEGSAGSTAISLAT 121 (423)
T ss_pred hhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCC-CEEEEeCCHHHHHHHHH
Confidence 35568888999999999999888888999999999999999999999999999999987666 45888999999999999
Q ss_pred HHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC-----CCCH-HHHH---HHHHHHHHh-----------------
Q 028372 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS-----ALRF-EEIL---EKGEEILKK----------------- 140 (210)
Q Consensus 87 ~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~-----~~~~-~~~~---~~a~~~~~~----------------- 140 (210)
+|+.+|++|++|||+++++.|++.|+.+||+|+.+++ .+++ ..+. ..+++++++
T Consensus 122 ~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~ 201 (423)
T PLN02356 122 VAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNG 201 (423)
T ss_pred HHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 9999999999999999999999999999999999964 1122 1111 224444433
Q ss_pred ---------------CCCeEEcCCCCCChhHHHHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEE
Q 028372 141 ---------------TPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVV 205 (210)
Q Consensus 141 ---------------~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vi 205 (210)
.++.+|++||+|+.|+..|+..+|+||++|+++++|+||+|+||||+++|++++||+.+|+++||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVi 281 (423)
T PLN02356 202 CISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCF 281 (423)
T ss_pred ccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEE
Confidence 14789999999999988877777999999997689999999999999999999999999999999
Q ss_pred EEE
Q 028372 206 LRV 208 (210)
Q Consensus 206 gv~ 208 (210)
+|-
T Consensus 282 gVe 284 (423)
T PLN02356 282 LID 284 (423)
T ss_pred EEe
Confidence 985
No 17
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=3.8e-49 Score=344.32 Aligned_cols=198 Identities=24% Similarity=0.328 Sum_probs=183.5
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+++++.+.+++|||++++.|+...|.+||+|+|++|||||||+|++.+++..+.+.+. .+.|+++|+||||+
T Consensus 11 ~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~ 86 (406)
T PRK06382 11 DILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQ 86 (406)
T ss_pred HHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHH
Confidence 44578899999999999999999998888999999999999999999999999998876553 24699999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
|+|++|+.+|++|++|||+.+++.|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.|++|
T Consensus 87 a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t 162 (406)
T PRK06382 87 GVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGT 162 (406)
T ss_pred HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHH
Confidence 99999999999999999999999999999999999999985 4889999999998886 7899999999998 789999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+++||++|+ +.||+||+|+|+||+++|++.++|+.+|+++||||..
T Consensus 163 ~~~Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~ 208 (406)
T PRK06382 163 IGLEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIES 208 (406)
T ss_pred HHHHHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 999999999 4799999999999999999999999999999999964
No 18
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=2.5e-48 Score=325.99 Aligned_cols=193 Identities=58% Similarity=0.922 Sum_probs=177.2
Q ss_pred cCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcE
Q 028372 16 GNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNL 95 (210)
Q Consensus 16 ~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~ 95 (210)
++|||++++.++...|.+||+|+|++|||||||+|++.+++..+.++|...++ .+|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 58999999999988889999999999999999999999999999999876555 56999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHcCCEEEEECCCC--CHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHHhhCC
Q 028372 96 IIVMPSTCSMERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG 173 (210)
Q Consensus 96 ~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~ 173 (210)
++|+|.++++.|+++|+.+||+|+.++.+. +.+++.+.+++++++.++++|++||+||.++..|+.|+++||++|++.
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999753 457888889998887768999999999999654555999999999966
Q ss_pred CCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 174 ~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
.||+||+|+|+||+++|++.+|++.+|+++||+|..
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~ 195 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDP 195 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 799999999999999999999999999999999964
No 19
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-50 Score=328.92 Aligned_cols=204 Identities=65% Similarity=1.008 Sum_probs=194.1
Q ss_pred hhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHH
Q 028372 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (210)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~al 84 (210)
....+.+.+.+|+|||+.+.+....+.++|++|+|++||+||.|||.++.|+.+|+.+|.++||+.+++++||||+|.+|
T Consensus 40 ~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigL 119 (362)
T KOG1252|consen 40 ILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGL 119 (362)
T ss_pred hhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHH
Confidence 34567788999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHH---HHHHHHHHHHhCCCeEEcCCCCCChhHHHHHH
Q 028372 85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE---ILEKGEEILKKTPDGYLLRQFENPANPKIHYE 161 (210)
Q Consensus 85 A~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 161 (210)
|++|+..|++|+++||++++.+|+..|+.+||+|+.++....+.. +...+.++..+.|+.+.++||.||.||..||.
T Consensus 120 A~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ 199 (362)
T KOG1252|consen 120 AYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYE 199 (362)
T ss_pred HHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccc
Confidence 999999999999999999999999999999999999997655555 88899999999999999999999999999999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 162 t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
++++||++|+.+++|.||.++|||||++|+.+++|+.+|+++|++|-
T Consensus 200 ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vd 246 (362)
T KOG1252|consen 200 TTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVD 246 (362)
T ss_pred cccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeC
Confidence 99999999999899999999999999999999999999999999983
No 20
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=1e-48 Score=331.52 Aligned_cols=198 Identities=22% Similarity=0.308 Sum_probs=182.0
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+++++...+++|||+++++++...|.+||+|+|++|||||||+|++.+++..+.+... ..+++++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 80 (317)
T TIGR02991 5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGR 80 (317)
T ss_pred HHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHH
Confidence 56788999999999999999999988788899999999999999999999999998764322 25699999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
|+|++|+.+|++|++|+|+..++.|++.|+.+||+|+.++. +++++.+.+++++++. +++|++||+||.+ ..||+|
T Consensus 81 alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t 156 (317)
T TIGR02991 81 ALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGT 156 (317)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHH
Confidence 99999999999999999999999999999999999999996 4788888899988876 7899999999998 689999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+++||++|+ +++|+||+|+|+||+++|++++||+.+|+++||+|..
T Consensus 157 ~a~Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep 202 (317)
T TIGR02991 157 LGLEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSM 202 (317)
T ss_pred HHHHHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 999999999 4689999999999999999999999999999999864
No 21
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=7.4e-49 Score=348.97 Aligned_cols=194 Identities=26% Similarity=0.365 Sum_probs=179.3
Q ss_pred hHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028372 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (210)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~ 87 (210)
..++.+.+.+|||++++.|++..|.+||+|+|++|||||||+|+|.+++..+.++.. .+.||++|+||||+++|++
T Consensus 28 ~~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~a 103 (521)
T PRK12483 28 AARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALA 103 (521)
T ss_pred HHHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHH
Confidence 346788999999999999999889999999999999999999999999987764332 2569999999999999999
Q ss_pred HHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHH
Q 028372 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (210)
Q Consensus 88 a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 167 (210)
|+.+|++|++|||..++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++|++|+|.||
T Consensus 104 A~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI 179 (521)
T PRK12483 104 AARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEI 179 (521)
T ss_pred HHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHH
Confidence 999999999999999999999999999999999985 5899999999999887 7899999999998 78999999999
Q ss_pred HHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 168 ~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
++|+++.||+||+|+|+||+++|++.++|+.+|+++||||..
T Consensus 180 ~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep 221 (521)
T PRK12483 180 LRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEP 221 (521)
T ss_pred HHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999965799999999999999999999999999999999963
No 22
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=4.5e-49 Score=335.49 Aligned_cols=197 Identities=27% Similarity=0.395 Sum_probs=181.9
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+++++.+.+++|||++++.+++..|.+||+|+|++|||||||||++.+++..+.+... .++|+++|+||||.
T Consensus 13 ~i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~ 88 (333)
T PRK08638 13 DIIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQ 88 (333)
T ss_pred HHHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHH
Confidence 45678999999999999999999988888899999999999999999999999998765332 25799999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
|+|++|+.+|++|++|+|++.++.|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+||.+ ..||.|
T Consensus 89 alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t 164 (333)
T PRK08638 89 GVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGT 164 (333)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccH
Confidence 99999999999999999999999999999999999999984 4788889999998886 7899999999998 689999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
+++||++|+ +++|+||+|+|+||+++|++.+||+.+|+++||+|-
T Consensus 165 ~a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVe 209 (333)
T PRK08638 165 IGLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQ 209 (333)
T ss_pred HHHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999999 579999999999999999999999999999999985
No 23
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=7.8e-49 Score=333.13 Aligned_cols=198 Identities=21% Similarity=0.287 Sum_probs=182.2
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+++++...+++|||+++++++...|.+||+|+|++|||||||+|++.+++.++.+++. .++|+++|+||||+
T Consensus 10 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 85 (321)
T PRK07048 10 DVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQ 85 (321)
T ss_pred HHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHH
Confidence 45678999999999999999999987778899999999999999999999999998875432 25699999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
|+|++|+.+|++|++|+|++.++.|++.|+.+||+|+.++.. ++++.+.+++++++. +++|++||+|+.+ ..|++|
T Consensus 86 alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~--~~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t 161 (321)
T PRK07048 86 AIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRY--TEDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGT 161 (321)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEECCCCCcch-hhccch
Confidence 999999999999999999999999999999999999999963 677888888888876 7999999999988 789999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+++||++|++ .||+||+|+||||+++|++.++|+.+|+++||||..
T Consensus 162 ~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep 207 (321)
T PRK07048 162 AAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEP 207 (321)
T ss_pred HHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEee
Confidence 9999999994 799999999999999999999999999999999964
No 24
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=1.6e-48 Score=345.16 Aligned_cols=201 Identities=47% Similarity=0.790 Sum_probs=182.3
Q ss_pred hHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028372 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (210)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~ 87 (210)
++.+.+.+++|||+++++++...+.+||+|+|++|||||||+|++.+++.++.++|.+.+| ++|+++|+||||+|+|++
T Consensus 2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~ 80 (454)
T TIGR01137 2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALV 80 (454)
T ss_pred ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHH
Confidence 4567788999999999999988888999999999999999999999999999999988877 679999999999999999
Q ss_pred HHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHH---HHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHH
Q 028372 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE---EILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (210)
Q Consensus 88 a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 164 (210)
|+.+|++|++|+|+++++.|++.++.+||+|+.++....++ ...+.+++++++.++.+|++||+|+.|+..||.|+|
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 160 (454)
T TIGR01137 81 AAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTG 160 (454)
T ss_pred HHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhH
Confidence 99999999999999999999999999999999998642222 335667778777557888999999999878999999
Q ss_pred HHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 165 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+||++|+++.||+||+|+||||+++|++.++|+.+|+++||||..
T Consensus 161 ~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~ 205 (454)
T TIGR01137 161 PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADP 205 (454)
T ss_pred HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEec
Confidence 999999976799999999999999999999999999999999963
No 25
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=1.2e-48 Score=340.97 Aligned_cols=198 Identities=24% Similarity=0.379 Sum_probs=179.7
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+.+++.+.+++|||++++.|+...|.+||+|+|++|||||||+|++.+++..+.+... .++||++|+||||+
T Consensus 2 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~ 77 (409)
T TIGR02079 2 DIEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQ 77 (409)
T ss_pred hHHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHH
Confidence 45678999999999999999999998888999999999999999999999999987533221 25699999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE---EECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHH
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII---LADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH 159 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~---~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 159 (210)
++|++|+.+|++|++|||+.+++.|++.++.+||+|+ .++ .+++++.+.+++++++. +++|++||+||.+ +.|
T Consensus 78 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g 153 (409)
T TIGR02079 78 GFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEG 153 (409)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhh
Confidence 9999999999999999999999999999999999754 343 45899999999998886 7899999999998 789
Q ss_pred HHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 160 YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 160 ~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
++|+++||++|+++.||+||+|+|+||+++|++.++|+.+|+++||||.
T Consensus 154 ~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVe 202 (409)
T TIGR02079 154 QGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVE 202 (409)
T ss_pred hHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999999997679999999999999999999999999999999985
No 26
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=2e-48 Score=330.68 Aligned_cols=198 Identities=23% Similarity=0.261 Sum_probs=181.4
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+++++...+++|||++++++++.+|.+||+|+|++|||||||+|++.+++.++.+++... ..|+++|+||||+
T Consensus 7 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~ 83 (322)
T PRK06110 7 ELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQ 83 (322)
T ss_pred HHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHH
Confidence 4567889999999999999999999888889999999999999999999999999998876533 4599999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
|+|++|+.+|++|++|+|++.++.|+++++.+||+|+.++. +++++.+.+++++++. ++||++|| |+.+ ..||.|
T Consensus 84 alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t 158 (322)
T PRK06110 84 SVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDL-VRGVAT 158 (322)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChH-Hhccch
Confidence 99999999999999999999999999999999999999974 5888888999988876 78999998 6666 679999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+++||++|++ .+|+||+|+|+||+++|++.++|+.+|+++||+|..
T Consensus 159 ~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep 204 (322)
T PRK06110 159 YALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVS 204 (322)
T ss_pred HHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEee
Confidence 9999999995 799999999999999999999999999999999863
No 27
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=2.4e-48 Score=336.57 Aligned_cols=203 Identities=18% Similarity=0.264 Sum_probs=179.5
Q ss_pred chhhhhHhhhcc----------------ccCCceeecccccCCCC--------ceEEEEeCCCCC-CCchhhHHHHHHHH
Q 028372 3 DNNAIKRDVTEL----------------IGNTPMVYLNNVVDGCV--------ARIAAKLETMEP-CSSVKDRIAYSMIK 57 (210)
Q Consensus 3 ~~~~~~~~i~~~----------------~~~TPl~~~~~l~~~~~--------~~i~~K~E~~~p-tGS~K~R~a~~~~~ 57 (210)
++..+.+++... +++|||++++.++..+| .+||+|+|++|| |||||+|++.+++.
T Consensus 22 ~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~ 101 (404)
T cd06447 22 DIFDAEARLKRFAPYIAKVFPETAASHGIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVL 101 (404)
T ss_pred HHHHHHHHHhhcchhhhhhCccccccCCccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHH
Confidence 344566667666 99999999999886544 799999999999 99999999999986
Q ss_pred H-----HHHcCCCCCCC----------------eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCC
Q 028372 58 D-----AEDKGLITPGK----------------TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA 116 (210)
Q Consensus 58 ~-----a~~~g~~~~~~----------------~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga 116 (210)
. +.+.|.+.|+. ++||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.+||
T Consensus 102 ~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GA 181 (404)
T cd06447 102 KHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGV 181 (404)
T ss_pred HHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCC
Confidence 4 77889888774 48999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHHhhCC---C-----CCEEEEccCchhHH
Q 028372 117 EIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG---K-----VDAFISGIGTGGTV 188 (210)
Q Consensus 117 ~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~---~-----~d~vv~pvG~Gg~~ 188 (210)
+|+.++. +++++.+.+++++++.++++|++|++++. .++||+|+++||++|+++ . ||+||+|+|+||++
T Consensus 182 eVv~v~~--~~~~a~~~a~~la~~~~~~~~v~~~n~~~-~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli 258 (404)
T cd06447 182 TVVEYET--DYSKAVEEGRKQAAADPMCYFVDDENSRD-LFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAP 258 (404)
T ss_pred EEEEECC--CHHHHHHHHHHHHHHCCCeEeCCCCCchh-HHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHH
Confidence 9999985 58899999999998876788999965555 489999999999999952 3 55899999999999
Q ss_pred HHHHHHHHhc-CCCCEEEEEE
Q 028372 189 TGAGRFLKEN-NPDIKVVLRV 208 (210)
Q Consensus 189 ~Gi~~~~k~~-~~~~~vigv~ 208 (210)
+|++++||+. .|+++||+|.
T Consensus 259 ~GIa~~lK~~~~p~~kVigVe 279 (404)
T cd06447 259 GGVAFGLKLIFGDNVHCFFAE 279 (404)
T ss_pred HHHHHHHHHhcCCCCEEEEEc
Confidence 9999999997 8999999985
No 28
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=9.4e-49 Score=343.08 Aligned_cols=201 Identities=22% Similarity=0.342 Sum_probs=180.1
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+++++.+.+++|||++++++++..|.+||+|+|++|||||||+|++.+++..+.+... .++|+++|+||||+
T Consensus 11 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~ 86 (420)
T PRK08639 11 DIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQ 86 (420)
T ss_pred HHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHH
Confidence 45678899999999999999999988888999999999999999999999999988533221 26799999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC-CCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHH
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD-SALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE 161 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 161 (210)
++|++|+.+|++|++|||+.+++.|++.++.+||+|+.+. ...+++++.+.+.+++++. +++|++||+|+.+ ++|++
T Consensus 87 alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~ 164 (420)
T PRK08639 87 GVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQG 164 (420)
T ss_pred HHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchh
Confidence 9999999999999999999999999999999999754322 1245899999999998886 7999999999998 78999
Q ss_pred hHHHHHHHhhCCC--CCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 162 TTGPEIWQDSGGK--VDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 162 t~~~Ei~~q~~~~--~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
|+|+||++|+++. ||+||+|+|+||+++|++.++|+.+|+++||||..
T Consensus 165 tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep 214 (420)
T PRK08639 165 TVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEP 214 (420)
T ss_pred HHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 9999999999655 99999999999999999999999999999999953
No 29
>PLN02550 threonine dehydratase
Probab=100.00 E-value=3.4e-48 Score=346.99 Aligned_cols=192 Identities=22% Similarity=0.366 Sum_probs=177.7
Q ss_pred hhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHH
Q 028372 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (210)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~ 89 (210)
++.+.+.+|||++++.|+..+|.+||+|+|++|||||||+|++.+++..+.++.. .+.|+++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~----~~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL----DKGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC----CCCEEEECCCHHHHHHHHHHH
Confidence 5568999999999999999889999999999999999999999999998854432 255999999999999999999
Q ss_pred HcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHH
Q 028372 90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ 169 (210)
Q Consensus 90 ~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 169 (210)
++|++|+||||+.++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++|++|+|.||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999985 4899999999998886 7899999999998 7899999999999
Q ss_pred hhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 170 DSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 170 q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
|+++.+|+||+|+|+||+++|++.++|+.+|++|||||..
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp 293 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEP 293 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 9965699999999999999999999999999999999964
No 30
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=3.5e-48 Score=330.60 Aligned_cols=198 Identities=19% Similarity=0.235 Sum_probs=181.5
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+++++...+++|||++++.|++..|.+||+|+|++||+||||+|++.+++.++.++|.+. ++|+++|+||||+
T Consensus 9 ~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~ 85 (338)
T PRK06608 9 NIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQ 85 (338)
T ss_pred HHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHH
Confidence 4577899999999999999999999888899999999999999999999999999999988643 5799999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
|+|++|+.+|++|++|+|+.+++.|+++++.+||+|+.++. .+++.+.+++ +++ +++||++||+|+.+ +.|++|
T Consensus 86 alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t 159 (338)
T PRK06608 86 AVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGT 159 (338)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHH
Confidence 99999999999999999999999999999999999999974 3666677777 444 47999999999998 689999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
++.||++|++..||+||+|+|+||+++|++.++|+.+|+++||+|-.
T Consensus 160 ~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep 206 (338)
T PRK06608 160 LCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEP 206 (338)
T ss_pred HHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEee
Confidence 99999999976799999999999999999999999999999999853
No 31
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-48 Score=326.57 Aligned_cols=197 Identities=22% Similarity=0.279 Sum_probs=184.9
Q ss_pred hhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHH
Q 028372 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (210)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a 83 (210)
....+.++...+..|||.+.-.+++..|.++|+|+|++||+||||.||+.+++...-++++ +..|+++|.||||+|
T Consensus 53 ~~~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a 128 (457)
T KOG1250|consen 53 ISSAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQA 128 (457)
T ss_pred hhhhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHH
Confidence 3456778899999999999988999999999999999999999999999999998877774 477999999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhH
Q 028372 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (210)
Q Consensus 84 lA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 163 (210)
+||+|+++|+|++||||..+|..|.+.++.+||+|++.+. +++++...|+++++++ ++.|++|||+|+. ++|++|+
T Consensus 129 ~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTi 204 (457)
T KOG1250|consen 129 AAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTI 204 (457)
T ss_pred HHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchH
Confidence 9999999999999999999999999999999999999995 4899999999999998 8999999999998 6899999
Q ss_pred HHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 164 ~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
+.||.+|++..+++|+||||+||+++||+.++|+..|+++||||.
T Consensus 205 g~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVE 249 (457)
T KOG1250|consen 205 GLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVE 249 (457)
T ss_pred HHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEe
Confidence 999999997666799999999999999999999999999999985
No 32
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=5.4e-48 Score=325.56 Aligned_cols=199 Identities=25% Similarity=0.349 Sum_probs=185.6
Q ss_pred CchhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchH
Q 028372 2 EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTG 81 (210)
Q Consensus 2 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g 81 (210)
.+++.+++.|.+.+++|||+++++++...|.+||+|+|++|||||||||++.+++.++.++|. ..+|+++|+||||
T Consensus 2 ~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g 77 (304)
T cd01562 2 EDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHA 77 (304)
T ss_pred hHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHH
Confidence 567899999999999999999999988888899999999999999999999999999987762 2569999999999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHH
Q 028372 82 VGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE 161 (210)
Q Consensus 82 ~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 161 (210)
.|+|++|+.+|++|++|+|++.++.|+++|+.+||+|+.++++ ++++.+.+++++++. +++|++||+|+.+ ..|+.
T Consensus 78 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~ 153 (304)
T cd01562 78 QGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED--FDEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQG 153 (304)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHH
Confidence 9999999999999999999999999999999999999999974 888999999998886 7999999999987 68899
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 162 t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
++++||++|++ .||+||+|+||||+++|++++||+.+|++|||+|..
T Consensus 154 ~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~ 200 (304)
T cd01562 154 TIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEP 200 (304)
T ss_pred HHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 99999999996 499999999999999999999999999999999975
No 33
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=4.8e-48 Score=337.22 Aligned_cols=198 Identities=23% Similarity=0.311 Sum_probs=182.5
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+.+++...+++|||+++++++...|.+||+|+|++|||||||+|++.+++.++.++.. .+.|+++|+||||+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 84 (403)
T PRK07334 9 DIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQ 84 (403)
T ss_pred HHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHH
Confidence 45678999999999999999999988788899999999999999999999999998754432 24599999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
|+|++|+.+|++|++|+|...++.|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ..||.|
T Consensus 85 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t 160 (403)
T PRK07334 85 GVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGT 160 (403)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHH
Confidence 99999999999999999999999999999999999999974 4888999999998876 7899999999998 689999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+++||++|+ +.||+||+|+|+||+++|++++||+.+|+++||+|..
T Consensus 161 ~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~ 206 (403)
T PRK07334 161 VALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQT 206 (403)
T ss_pred HHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 999999999 5799999999999999999999999999999999864
No 34
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=8.2e-48 Score=326.28 Aligned_cols=198 Identities=20% Similarity=0.247 Sum_probs=180.6
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+++++.+.+++|||++++.++...|.+||+|+|++|||||||+|++.+++..+.++.. .++++++|+||||+
T Consensus 6 ~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~ 81 (317)
T PRK06815 6 AILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQ 81 (317)
T ss_pred HHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHH
Confidence 56678999999999999999999988788899999999999999999999999987643321 25699999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
|+|++|+.+|++|++|+|+.+++.|++.|+.+||+|+.++.+ ++++...+++++++. +++|++||+|+.+ ..||+|
T Consensus 82 alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t 157 (317)
T PRK06815 82 GVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGD--ALNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGT 157 (317)
T ss_pred HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhH
Confidence 999999999999999999999999999999999999999964 788888888888876 7889999999987 689999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+++||++|++ +||+||+|+|+||+++|++.+||+.+|+++||||..
T Consensus 158 ~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep 203 (317)
T PRK06815 158 IGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWP 203 (317)
T ss_pred HHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9999999995 699999999999999999999999999999999863
No 35
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1.7e-47 Score=340.13 Aligned_cols=194 Identities=26% Similarity=0.368 Sum_probs=179.1
Q ss_pred hHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028372 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (210)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~ 87 (210)
..++.+.+.+|||+++++|+...|.+||+|+|++|||||||+|++.+++..+.++.. .++||++|+||||+++|++
T Consensus 8 ~~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~a 83 (499)
T TIGR01124 8 TARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFS 83 (499)
T ss_pred HhHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHH
Confidence 347889999999999999998888999999999999999999999999988743322 2569999999999999999
Q ss_pred HHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHH
Q 028372 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (210)
Q Consensus 88 a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 167 (210)
|+++|++|++|||+.++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+||.+ ++|++|+|.||
T Consensus 84 a~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI 159 (499)
T TIGR01124 84 AARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEI 159 (499)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHH
Confidence 999999999999999999999999999999999984 5899999999998886 7899999999998 78999999999
Q ss_pred HHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 168 ~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
++|++.++|+||+|+||||+++|++.++|+.+|+++||||..
T Consensus 160 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep 201 (499)
T TIGR01124 160 LRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEP 201 (499)
T ss_pred HHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 999966799999999999999999999999999999999964
No 36
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=1.4e-47 Score=332.31 Aligned_cols=183 Identities=25% Similarity=0.396 Sum_probs=172.3
Q ss_pred CceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEE
Q 028372 18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97 (210)
Q Consensus 18 TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v 97 (210)
|||+++++++...|.+||+|+|++|||||||+|++.+++.++.+++. .++|+++|+||||+++|++|+.+|++|++
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhcc----CCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 89999999998888999999999999999999999999999988875 24699999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHHhhCCCCCE
Q 028372 98 VMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDA 177 (210)
Q Consensus 98 vvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~ 177 (210)
|||+.+++.|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.||+|++.||++|+ +.||+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDI-PDVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhC-CCCCE
Confidence 99999999999999999999999985 5899999999998886 7899999999998 789999999999999 47999
Q ss_pred EEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 178 FISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 178 vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
||+|+||||+++|++.++|+.+|+++||||..
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~ 183 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEA 183 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 99999999999999999999999999999964
No 37
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=2.4e-47 Score=323.04 Aligned_cols=188 Identities=25% Similarity=0.324 Sum_probs=171.7
Q ss_pred CCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEE
Q 028372 17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLI 96 (210)
Q Consensus 17 ~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~ 96 (210)
+|||+++++++...|.+||+|+|++|||||||+|++.+++.++.++|. .+ .++|+++|+||||.|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999988778899999999999999999999999999999884 22 3679999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHHhhCC--C
Q 028372 97 IVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG--K 174 (210)
Q Consensus 97 vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~--~ 174 (210)
+|+|+.+++.|++.|+.+||+|+.++.+. ++++.+.+++++++.++++|++||+||.+ ..||.|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKVW-WEADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCch-HHHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCC
Confidence 99999999999999999999999998642 66677778888777657999999999998 68889999999999975 5
Q ss_pred CCEEEEccCchhHHHHHHHHHHhcC-CCCEEEEEE
Q 028372 175 VDAFISGIGTGGTVTGAGRFLKENN-PDIKVVLRV 208 (210)
Q Consensus 175 ~d~vv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigv~ 208 (210)
||+||+|+|+||+++|++++||+.+ |+++||+|-
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Ve 191 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVE 191 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 9999999999999999999999996 999999985
No 38
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=6.6e-47 Score=321.10 Aligned_cols=189 Identities=25% Similarity=0.339 Sum_probs=174.3
Q ss_pred hccccCCceeecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHH
Q 028372 12 TELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (210)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~ 90 (210)
...+++|||+++++++..+| .+||+|+|++|||||||+|++.+++.+++++|. ++|+++|+||||+|+|++|+.
T Consensus 10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~ 84 (319)
T PRK06381 10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARL 84 (319)
T ss_pred cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHH
Confidence 35699999999999998887 699999999999999999999999999999885 679999999999999999999
Q ss_pred cCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCC-CC-hhHHHHHHhHHHHHH
Q 028372 91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFE-NP-ANPKIHYETTGPEIW 168 (210)
Q Consensus 91 ~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-n~-~~~~~g~~t~~~Ei~ 168 (210)
+|++|++|+|...+..|+++|+.+||+|+.++++ ++++.+.+++++++. ++|++++++ |+ .+ +.||.|+++||+
T Consensus 85 ~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~-~~G~~t~a~Ei~ 160 (319)
T PRK06381 85 YGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDGK--YEEAVERSRKFAKEN-GIYDANPGSVNSVVD-IEAYSAIAYEIY 160 (319)
T ss_pred cCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCCC--HHHHHHHHHHHHHHc-CcEecCCCCCCcchH-hhhHHHHHHHHH
Confidence 9999999999999999999999999999999964 788888899988875 789998886 77 45 689999999999
Q ss_pred HhhCCCCCEEEEccCchhHHHHHHHHHHhc------CCCCEEEEEEe
Q 028372 169 QDSGGKVDAFISGIGTGGTVTGAGRFLKEN------NPDIKVVLRVL 209 (210)
Q Consensus 169 ~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~------~~~~~vigv~~ 209 (210)
+|++..||+||+|+||||+++|++.+||+. .|+++||+|..
T Consensus 161 ~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~ 207 (319)
T PRK06381 161 EALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVST 207 (319)
T ss_pred HHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEee
Confidence 999767999999999999999999999998 79999999974
No 39
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=5.3e-47 Score=331.72 Aligned_cols=202 Identities=17% Similarity=0.270 Sum_probs=178.9
Q ss_pred hhhhhHhhhcc----------------ccCCceeecccccCCCC--------ceEEEEeCCCCC-CCchhhHHHHHHHHH
Q 028372 4 NNAIKRDVTEL----------------IGNTPMVYLNNVVDGCV--------ARIAAKLETMEP-CSSVKDRIAYSMIKD 58 (210)
Q Consensus 4 ~~~~~~~i~~~----------------~~~TPl~~~~~l~~~~~--------~~i~~K~E~~~p-tGS~K~R~a~~~~~~ 58 (210)
+..+++++..+ +++|||++++.++..+| .+||+|+|++|| |||||+|++.+++..
T Consensus 46 i~~A~~~i~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~ 125 (441)
T PRK02991 46 VQDAEARLKRFAPYLAKAFPETAATGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLK 125 (441)
T ss_pred HHHHHHHHHhhhhhhhhhCccccccCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHH
Confidence 44566667665 89999999998886554 699999999999 999999999999875
Q ss_pred -----HHHcCCCCCCC----------------eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 59 -----AEDKGLITPGK----------------TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 59 -----a~~~g~~~~~~----------------~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
+++.|.+.++. .+||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.+||+
T Consensus 126 l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAe 205 (441)
T PRK02991 126 HAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVT 205 (441)
T ss_pred hhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCE
Confidence 55778766653 479999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHHhhCC--------CCCEEEEccCchhHHH
Q 028372 118 IILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG--------KVDAFISGIGTGGTVT 189 (210)
Q Consensus 118 v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~--------~~d~vv~pvG~Gg~~~ 189 (210)
|+.++. +++++.+.+++++++.+++||+++++++.. ++||+|+++||++|+++ .||+||+|+|+||+++
T Consensus 206 Vi~~~~--~~~~a~~~A~~la~~~~~~~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGlia 282 (441)
T PRK02991 206 VVEYEG--DYGVAVEEGRKAAESDPNCYFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPG 282 (441)
T ss_pred EEEECC--CHHHHHHHHHHHHHhcCCeEeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHH
Confidence 999996 489999999999888767899999877776 79999999999999952 2679999999999999
Q ss_pred HHHHHHHhc-CCCCEEEEEE
Q 028372 190 GAGRFLKEN-NPDIKVVLRV 208 (210)
Q Consensus 190 Gi~~~~k~~-~~~~~vigv~ 208 (210)
|++.+||+. +|+++||+|-
T Consensus 283 Gia~~lk~~~~~~~kVigVE 302 (441)
T PRK02991 283 GVAFGLKLAFGDHVHCFFAE 302 (441)
T ss_pred HHHHHHHHhcCCCCEEEEEe
Confidence 999999997 7999999985
No 40
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=5e-47 Score=338.08 Aligned_cols=194 Identities=26% Similarity=0.378 Sum_probs=179.1
Q ss_pred hHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028372 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (210)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~ 87 (210)
..++.+.+.+|||++++++++..|.+||+|+|++|||||||+|+|.+++..+.++.. .++||++|+||||+++|++
T Consensus 11 ~~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~a 86 (504)
T PRK09224 11 TARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALS 86 (504)
T ss_pred HHHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHH
Confidence 457889999999999999998888999999999999999999999999988754321 3679999999999999999
Q ss_pred HHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHH
Q 028372 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (210)
Q Consensus 88 a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 167 (210)
|+.+|++|++|||++++..|++.++.+||+|+.++. +++++...+++++++. +++|++||+||.+ ++|++|++.||
T Consensus 87 a~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI 162 (504)
T PRK09224 87 AARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEI 162 (504)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHH
Confidence 999999999999999999999999999999999985 5899999999998886 7899999999998 78999999999
Q ss_pred HHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 168 ~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
++|+++.||+||+|+||||+++|++.++|..+|+++||||..
T Consensus 163 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~ 204 (504)
T PRK09224 163 LQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEP 204 (504)
T ss_pred HHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 999965699999999999999999999999999999999963
No 41
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.2e-46 Score=320.82 Aligned_cols=187 Identities=24% Similarity=0.321 Sum_probs=173.1
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..+++++...+.+|||++++.+ +||+|+|++|||||||+|++.+++..+.++|. .+.|+++|+||||+
T Consensus 25 ~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~----~~~VV~aSsGN~G~ 94 (349)
T PRK08813 25 DVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGD----ERPVICASAGNHAQ 94 (349)
T ss_pred HHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CCeEEEECCCHHHH
Confidence 456788999999999999998865 49999999999999999999999999999886 24699999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
|+|++|+.+|++|+||||+++++.|++.++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|
T Consensus 95 alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~T 170 (349)
T PRK08813 95 GVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGT 170 (349)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHH
Confidence 99999999999999999999999999999999999999975 5899999999999886 8999999999998 789999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
+++||++|. ||+||+|+|+||+++|++.++|+ ++++||||-
T Consensus 171 ig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVq 211 (349)
T PRK08813 171 VGIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQ 211 (349)
T ss_pred HHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEE
Confidence 999999874 79999999999999999999996 579999985
No 42
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=8.5e-47 Score=329.33 Aligned_cols=192 Identities=20% Similarity=0.290 Sum_probs=173.8
Q ss_pred cccCCceeecccccCC--------CCceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC----------
Q 028372 14 LIGNTPMVYLNNVVDG--------CVARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK---------- 69 (210)
Q Consensus 14 ~~~~TPl~~~~~l~~~--------~~~~i~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~~~---------- 69 (210)
++++|||++++++++. .+.+||+|+|++|| |||||+|++.+++.. +++.|.++++.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 9999999999998763 35799999999999 999999999999874 67889877763
Q ss_pred ------eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCC
Q 028372 70 ------TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPD 143 (210)
Q Consensus 70 ------~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~ 143 (210)
.+|+++|+||||+|+|++|+.+|++|+||||+++++.|++.++.+||+|+.++. +++++.+.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999999999999996 489999999999988767
Q ss_pred eEEcCCCCCChhHHHHHHhHHHHHHHhhCC--------CCCEEEEccCchhHHHHHHHHHHhc-CCCCEEEEEE
Q 028372 144 GYLLRQFENPANPKIHYETTGPEIWQDSGG--------KVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVVLRV 208 (210)
Q Consensus 144 ~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~--------~~d~vv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigv~ 208 (210)
+||+++ .|+.++++||+|+++||++|+++ .||+|++|+|+||+++|++.+||+. +|+++||+|-
T Consensus 225 ~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VE 297 (431)
T TIGR02035 225 CYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAE 297 (431)
T ss_pred eEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 888887 46666689999999999999952 4779999999999999999999997 8999999985
No 43
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=1.2e-46 Score=318.22 Aligned_cols=192 Identities=26% Similarity=0.385 Sum_probs=175.1
Q ss_pred chhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028372 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (210)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (210)
++..++++|.+.+++|||++++.++.. +.+||+|+|++|||||||+|++.+++..+.+ + .++|+++|+||||+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~ 81 (310)
T PRK08246 9 DVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGL 81 (310)
T ss_pred HHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHH
Confidence 456789999999999999999998866 7899999999999999999999999988765 2 26799999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
|+|++|+.+|++|++|+|+..++.|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.||+|
T Consensus 82 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t 157 (310)
T PRK08246 82 AVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGT 157 (310)
T ss_pred HHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHH
Confidence 99999999999999999999999999999999999999985 4788888898888876 8999999999998 689999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+++||++|+ +.||+||+|+|+||+++|++.+|+. +++||+|..
T Consensus 158 ~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~ 200 (310)
T PRK08246 158 LGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEP 200 (310)
T ss_pred HHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEee
Confidence 999999999 5799999999999999999999964 489999863
No 44
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=9.3e-47 Score=323.56 Aligned_cols=191 Identities=24% Similarity=0.288 Sum_probs=173.7
Q ss_pred HhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028372 9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (210)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a 88 (210)
++++..+++|||+++++++...|.+||+|+|++|||||||+|++.+++.++.++|. ++||++|+||||.|+|++|
T Consensus 20 ~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~a 94 (351)
T PRK06352 20 PMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYA 94 (351)
T ss_pred CccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 35788999999999999988778899999999999999999999999999999885 6799999999999999999
Q ss_pred HHcCCcEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHH
Q 028372 89 AARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (210)
Q Consensus 89 ~~~g~~~~vvvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 167 (210)
+.+|++|++|+|++ .++.|+++|+.+||+|+.++. +++++.+.+++++++. ++++++ +.|+.+ ..||.|+++||
T Consensus 95 a~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~EI 169 (351)
T PRK06352 95 TRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-SVNPYR-LEGQKTAAFEI 169 (351)
T ss_pred HHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-CCCccc-eeeHHHHHHHH
Confidence 99999999999997 589999999999999999996 4788888999988875 566665 568988 67899999999
Q ss_pred HHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCC-----CEEEEEEe
Q 028372 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPD-----IKVVLRVL 209 (210)
Q Consensus 168 ~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~-----~~vigv~~ 209 (210)
++|++..||+||+|+|+||+++|++++||+++|+ ++||+|..
T Consensus 170 ~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep 216 (351)
T PRK06352 170 CEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEA 216 (351)
T ss_pred HHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEee
Confidence 9999767999999999999999999999999887 79999863
No 45
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=3.3e-46 Score=317.44 Aligned_cols=191 Identities=24% Similarity=0.257 Sum_probs=176.1
Q ss_pred HhhhccccCCceeecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028372 9 RDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (210)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~ 87 (210)
+++...+++|||+++++++...+ .+||+|+|++|||||||+|++.+++.++.++|. ++|+++|+||||+|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHH
Confidence 56888999999999999987666 799999999999999999999999999998874 679999999999999999
Q ss_pred HHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHH
Q 028372 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (210)
Q Consensus 88 a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 167 (210)
|+.+|++|++|+|+++++.|++.|+.+||+|+.++. +++++.+.+++++++. ++|++||+|+.+ ..||.|++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHH
Confidence 999999999999999999999999999999999986 4788888899988875 789999999998 57999999999
Q ss_pred HHhhCC-CCCEEEEccCchhHHHHHHHHHHhcC------CCCEEEEEEe
Q 028372 168 WQDSGG-KVDAFISGIGTGGTVTGAGRFLKENN------PDIKVVLRVL 209 (210)
Q Consensus 168 ~~q~~~-~~d~vv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigv~~ 209 (210)
++|++. .||+||+|+||||+++|++.+||+.+ |+++||+|..
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~ 212 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQA 212 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEec
Confidence 999963 69999999999999999999999875 6899999853
No 46
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=5.3e-46 Score=323.52 Aligned_cols=191 Identities=23% Similarity=0.221 Sum_probs=176.4
Q ss_pred hhhccccCCceeecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028372 10 DVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (210)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a 88 (210)
.++..+++|||++++++++.+| .+||+|+|++|||||||||++.+++.+|.++|. ++|+++|+||||.|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 3788999999999999987777 599999999999999999999999999999885 6799999999999999999
Q ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHH
Q 028372 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168 (210)
Q Consensus 89 ~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 168 (210)
+.+|++|+||+|+++++.|+++++.+||+|+.++++ ++++.+.+++++++. ++|+++++.||.+ ++|+.|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~--~~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDGL--ISDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHH
Confidence 999999999999999999999999999999999964 788888888888776 7999999999998 689999999999
Q ss_pred HhhCC-CCCEEEEccCchhHHHHHHHHHHhc-------CCCCEEEEEEe
Q 028372 169 QDSGG-KVDAFISGIGTGGTVTGAGRFLKEN-------NPDIKVVLRVL 209 (210)
Q Consensus 169 ~q~~~-~~d~vv~pvG~Gg~~~Gi~~~~k~~-------~~~~~vigv~~ 209 (210)
+|+++ .||+||+|+|+|++++|++.+|+++ .+..++|+|..
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~ 271 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQA 271 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEe
Confidence 99975 4999999999999999999999987 38899999864
No 47
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=4.7e-45 Score=298.87 Aligned_cols=186 Identities=40% Similarity=0.586 Sum_probs=173.9
Q ss_pred CceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEE
Q 028372 18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97 (210)
Q Consensus 18 TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v 97 (210)
|||+++++++...+.+||+|+|++|||||||+|++.+++..+.++|.+ ++ ..|+++|+||||.|+|++|+.+|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999887778999999999999999999999999999998865 33 6799999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHHhhCC-CCC
Q 028372 98 VMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG-KVD 176 (210)
Q Consensus 98 vvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~-~~d 176 (210)
|+|+..++.++++|+.+|++|+.++.+ ++++.+.+++++++.++++|++||.|+.+ ..|+.++++||++|++. .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999975 78899999999998668999999999998 67888999999999976 599
Q ss_pred EEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 177 AFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 177 ~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
+||+|+|+||+++|++.+||+.+|+++||+|.
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~ 187 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVE 187 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99999999999999999999999999999985
No 48
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1.2e-45 Score=323.33 Aligned_cols=191 Identities=18% Similarity=0.238 Sum_probs=177.4
Q ss_pred hhhccccCCceeecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028372 10 DVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (210)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a 88 (210)
.++..+++|||++++++++.+| .+||+|+|++|||||||||++.+++..|.+.|. ++|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence 4788999999999999988888 599999999999999999999999999999885 6789999999999999999
Q ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHH
Q 028372 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168 (210)
Q Consensus 89 ~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 168 (210)
+++|++|+||+|+++++.|+.+++.+||+|+.++++ ++++.+.+++++++.++++|++++.||.. ++|++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~--~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDGN--YDDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHH
Confidence 999999999999999999999999999999999964 78899999999888767899999888987 789999999999
Q ss_pred HhhCCC-CCEEEEccCchhHHHHHHHHHHhc-------CCCCEEEEEE
Q 028372 169 QDSGGK-VDAFISGIGTGGTVTGAGRFLKEN-------NPDIKVVLRV 208 (210)
Q Consensus 169 ~q~~~~-~d~vv~pvG~Gg~~~Gi~~~~k~~-------~~~~~vigv~ 208 (210)
+|+++. ||+||+|+|+||+++|++.+|+++ ++.+|||+|.
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq 281 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQ 281 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEe
Confidence 999754 999999999999999999999997 6889999985
No 49
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.4e-45 Score=316.74 Aligned_cols=190 Identities=26% Similarity=0.276 Sum_probs=172.0
Q ss_pred HhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028372 9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (210)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a 88 (210)
++++..+++|||++++.++...|.+||+|+|++|||||||+|++.+++..+.++|. .+||++|+||||.|+|++|
T Consensus 23 ~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a 97 (353)
T PRK07409 23 PVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYA 97 (353)
T ss_pred CcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 34788999999999999987778899999999999999999999999999998875 6799999999999999999
Q ss_pred HHcCCcEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHH
Q 028372 89 AARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (210)
Q Consensus 89 ~~~g~~~~vvvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 167 (210)
+.+|++|++|+|++ .++.|++.|+.+||+|+.+++ +++++.+.+++++++. +++++++ .|+.+ ..||.|+++||
T Consensus 98 ~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI 172 (353)
T PRK07409 98 ARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEI 172 (353)
T ss_pred HHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHHH
Confidence 99999999999997 689999999999999999996 4889999999988876 4777775 58988 57889999999
Q ss_pred HHhhCCCCCEEEEccCchhHHHHHHHHHHhcCC------CCEEEEEE
Q 028372 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNP------DIKVVLRV 208 (210)
Q Consensus 168 ~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~------~~~vigv~ 208 (210)
++|++..||+||+|+|+||+++|++.+|++..+ .++||+|.
T Consensus 173 ~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVe 219 (353)
T PRK07409 173 VDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQ 219 (353)
T ss_pred HHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEe
Confidence 999976799999999999999999999998743 48999984
No 50
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-46 Score=295.73 Aligned_cols=198 Identities=23% Similarity=0.338 Sum_probs=184.6
Q ss_pred CchhhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchH
Q 028372 2 EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTG 81 (210)
Q Consensus 2 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g 81 (210)
.++..+++||..++..||.+.++.+.+..|.+||+|+|++|.+||||.|||.+.++.+.++.. .+.|++.||||||
T Consensus 10 ~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHa 85 (323)
T KOG1251|consen 10 EDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHA 85 (323)
T ss_pred HHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHH
Confidence 456789999999999999999999999999999999999999999999999999998874433 3779999999999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHH
Q 028372 82 VGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE 161 (210)
Q Consensus 82 ~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 161 (210)
+|+|++|+.+|+|+++|||.++|..|...++.||++|+.+++. .+++.+.++++.++. +.+.++||++|.. +.|++
T Consensus 86 qAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqg 161 (323)
T KOG1251|consen 86 QALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQG 161 (323)
T ss_pred HHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCcce-eeccc
Confidence 9999999999999999999999999999999999999999974 467778899999888 8999999999997 89999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 162 t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
|++.|++||+ +.+|++|+|+|+||+++|++.+.|...|+++|++|-
T Consensus 162 TiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~ve 207 (323)
T KOG1251|consen 162 TIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVE 207 (323)
T ss_pred hHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEec
Confidence 9999999999 589999999999999999999999999999999973
No 51
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=5.9e-45 Score=312.65 Aligned_cols=192 Identities=26% Similarity=0.298 Sum_probs=170.7
Q ss_pred hHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028372 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (210)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~ 87 (210)
..++...+++|||+++++++...|.+||+|+|++|||||||+|++.+++.++.++|. .+||++|+||||.|+|++
T Consensus 19 ~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~~ 93 (352)
T PRK06721 19 TPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAAY 93 (352)
T ss_pred CCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHH
Confidence 445778899999999999987778899999999999999999999999999999885 679999999999999999
Q ss_pred HHHcCCcEEEEEcCCC-CHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHH
Q 028372 88 AAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (210)
Q Consensus 88 a~~~g~~~~vvvp~~~-~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 166 (210)
|+.+|++|++|+|+.. ++.|+++|+.+||+|+.+++ +++++.+.+++++++. ++++++ +.|+.+ ..||.|+++|
T Consensus 94 aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~E 168 (352)
T PRK06721 94 AARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFE 168 (352)
T ss_pred HHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHHH
Confidence 9999999999999974 78999999999999999985 4788888999998876 566665 568887 6789999999
Q ss_pred HHHhhCCCCCEEEEccCchhHHHH----HHHHHHhcC-CCCEEEEEEe
Q 028372 167 IWQDSGGKVDAFISGIGTGGTVTG----AGRFLKENN-PDIKVVLRVL 209 (210)
Q Consensus 167 i~~q~~~~~d~vv~pvG~Gg~~~G----i~~~~k~~~-~~~~vigv~~ 209 (210)
|++|++..||+||+|+|+||+++| +++++|+.+ |+++||+|..
T Consensus 169 i~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep 216 (352)
T PRK06721 169 ICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEA 216 (352)
T ss_pred HHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEec
Confidence 999997679999999999999997 555566664 9999999863
No 52
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=4.7e-45 Score=321.66 Aligned_cols=187 Identities=21% Similarity=0.239 Sum_probs=171.9
Q ss_pred hhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHH
Q 028372 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (210)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~ 90 (210)
++..+++|||++++ ++..+|.+||+|+|++|||||||||++.+++.+|.+.|. ++|+++|+||||.|+|++|+.
T Consensus 60 v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 133 (442)
T PRK05638 60 ISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSAR 133 (442)
T ss_pred cccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHHH
Confidence 67899999999984 666677899999999999999999999999999998874 679999999999999999999
Q ss_pred cCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHHh
Q 028372 91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD 170 (210)
Q Consensus 91 ~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 170 (210)
+|++|+||||+++++.|+++++.+||+|+.+++ +++++.+.+++++++. ++|++++++||.+ ..|+.|+++||++|
T Consensus 134 ~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~eq 209 (442)
T PRK05638 134 AGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWEE 209 (442)
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHHH
Confidence 999999999999999999999999999999985 4889989999988775 7999999999998 78999999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcCCC------CEEEEEEe
Q 028372 171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPD------IKVVLRVL 209 (210)
Q Consensus 171 ~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~------~~vigv~~ 209 (210)
++ ||+||+|+|+||+++|++.+|+++++. .+||+|..
T Consensus 210 ~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~ 252 (442)
T PRK05638 210 IN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQT 252 (442)
T ss_pred HC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEec
Confidence 95 999999999999999999999998753 59999853
No 53
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=9.7e-45 Score=309.15 Aligned_cols=178 Identities=24% Similarity=0.267 Sum_probs=160.3
Q ss_pred hhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHH
Q 028372 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (210)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~ 89 (210)
.++.++++|||++.+ +||+|+|++|||||||||++.++++.+.+.|. ++|+++|+||+|.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 478899999999874 69999999999999999999999999998875 67999999999999999999
Q ss_pred HcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHH
Q 028372 90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ 169 (210)
Q Consensus 90 ~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 169 (210)
.+|++|++|||+++++.|+++|+.+||+|+.++++ ++++.+. +++. +.+|++++.||.+ ++|++|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~~--~~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRGS--REDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999964 5655443 4444 6789999999998 7899999999999
Q ss_pred hhCC-CCCEEEEccCchhHHHHHHHHHHhcCCC------CEEEEEE
Q 028372 170 DSGG-KVDAFISGIGTGGTVTGAGRFLKENNPD------IKVVLRV 208 (210)
Q Consensus 170 q~~~-~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~------~~vigv~ 208 (210)
|+++ .||+||+|+|+||+++|++++|+++.+. .|+|+|-
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq 235 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQ 235 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEe
Confidence 9964 5999999999999999999999998653 6999985
No 54
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=6.4e-45 Score=317.01 Aligned_cols=191 Identities=25% Similarity=0.264 Sum_probs=174.2
Q ss_pred HhhhccccCCceeecccccCCCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028372 9 RDVTELIGNTPMVYLNNVVDGCVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (210)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~~~-~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~ 87 (210)
+.++..+++|||+++++++..+|. +||+|+|++|||||||||++.+++.++.++|. ++|+++|+||||.|+|++
T Consensus 59 ~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~ 133 (397)
T PRK06260 59 KIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAY 133 (397)
T ss_pred CcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 357889999999999999887786 99999999999999999999999999999885 679999999999999999
Q ss_pred HHHcCCcEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHH
Q 028372 88 AAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (210)
Q Consensus 88 a~~~g~~~~vvvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 166 (210)
|+.+|++|++|+|++ +++.|+.+++.+||+|+.+++ +++++.+.+++++++. ++|+++++ ||.+ ..||.|+++|
T Consensus 134 aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~E 208 (397)
T PRK06260 134 AARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFE 208 (397)
T ss_pred HHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHH
Confidence 999999999999997 789999999999999999986 4888999999998876 78888887 8988 6899999999
Q ss_pred HHHhhCC-CCCEEEEccCchhHHHHHHHHHHhcCC------CCEEEEEEe
Q 028372 167 IWQDSGG-KVDAFISGIGTGGTVTGAGRFLKENNP------DIKVVLRVL 209 (210)
Q Consensus 167 i~~q~~~-~~d~vv~pvG~Gg~~~Gi~~~~k~~~~------~~~vigv~~ 209 (210)
|++|+++ .||+||+|+|+||+++|++.+||++.+ ..|+|+|..
T Consensus 209 i~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~ 258 (397)
T PRK06260 209 IADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQA 258 (397)
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEec
Confidence 9999975 699999999999999999999998763 369999853
No 55
>PLN02569 threonine synthase
Probab=100.00 E-value=9.5e-44 Score=314.39 Aligned_cols=193 Identities=18% Similarity=0.142 Sum_probs=172.8
Q ss_pred hhccccCCceeecccccCC-CC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028372 11 VTELIGNTPMVYLNNVVDG-CV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (210)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~-~~-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a 88 (210)
++.++++|||+++++++.. .| .+||+|+|++|||||||||++.+++..+.+.|........|+++|+||||.|+|++|
T Consensus 127 vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAaya 206 (484)
T PLN02569 127 VSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYC 206 (484)
T ss_pred eecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHH
Confidence 7888999999999999877 77 589999999999999999999999999988765221125699999999999999999
Q ss_pred HHcCCcEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHH
Q 028372 89 AARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (210)
Q Consensus 89 ~~~g~~~~vvvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 167 (210)
+.+|++|+||+|++ .+..|+.+|+.+||+|+.+++ +++++.+.+++++++. ++|+++++ ||.+ ++||.|+++||
T Consensus 207 a~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~EI 281 (484)
T PLN02569 207 AAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAIEI 281 (484)
T ss_pred HhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHHHH
Confidence 99999999999996 788999999999999999996 4899999999988876 68999988 9998 68999999999
Q ss_pred HHhhCCC-CCEEEEccCchhHHHHHHHHHHhcC------CCCEEEEEE
Q 028372 168 WQDSGGK-VDAFISGIGTGGTVTGAGRFLKENN------PDIKVVLRV 208 (210)
Q Consensus 168 ~~q~~~~-~d~vv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigv~ 208 (210)
++|++++ ||+||+|+|+||+++|++++||++. +..|+|+|-
T Consensus 282 ~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vq 329 (484)
T PLN02569 282 LQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQ 329 (484)
T ss_pred HHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEe
Confidence 9999764 9999999999999999999999863 345899885
No 56
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=1.1e-43 Score=304.26 Aligned_cols=181 Identities=23% Similarity=0.288 Sum_probs=165.7
Q ss_pred hhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHH
Q 028372 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (210)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~ 90 (210)
++.+.+.|||+++. .+||+|+|++|||||||||++.+++..+.++|. ++|+++|+||||+|+|++|+.
T Consensus 58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 125 (347)
T PRK08329 58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLS 125 (347)
T ss_pred CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHH
Confidence 67888999999873 389999999999999999999999999999885 679999999999999999999
Q ss_pred cCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHHh
Q 028372 91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD 170 (210)
Q Consensus 91 ~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 170 (210)
+|++|++|+|+++++.|+++++.+||+|+.++++ ++++...+++++++. +++|++++.||.+ ..||+|+++||++|
T Consensus 126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~~--~~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eq 201 (347)
T PRK08329 126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEGD--RMEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQ 201 (347)
T ss_pred cCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHH
Confidence 9999999999999999999999999999999964 677778888888775 6788999999998 78999999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcC------CCCEEEEEE
Q 028372 171 SGGKVDAFISGIGTGGTVTGAGRFLKENN------PDIKVVLRV 208 (210)
Q Consensus 171 ~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigv~ 208 (210)
++ .||+||+|+|+||+++|++++||++. +..++|+|.
T Consensus 202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq 244 (347)
T PRK08329 202 IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQ 244 (347)
T ss_pred cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEe
Confidence 95 89999999999999999999999873 567999885
No 57
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=6.5e-44 Score=310.31 Aligned_cols=202 Identities=22% Similarity=0.233 Sum_probs=174.2
Q ss_pred hhhhhHhh--hccccCCceeecccccCCCC-ceEEEEeCCC-CCCCchhhHHHHHHHHHHHH--cCC-C-----------
Q 028372 4 NNAIKRDV--TELIGNTPMVYLNNVVDGCV-ARIAAKLETM-EPCSSVKDRIAYSMIKDAED--KGL-I----------- 65 (210)
Q Consensus 4 ~~~~~~~i--~~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~-~ptGS~K~R~a~~~~~~a~~--~g~-~----------- 65 (210)
+..+.+++ ....++|||+++++++..+| .+||+|+|++ |||||||+|++.+.+..+.. .+. .
T Consensus 29 ~~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~ 108 (399)
T PRK08206 29 AKKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSG 108 (399)
T ss_pred HHHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhh
Confidence 44677788 55899999999999998888 6999999998 59999999999988887653 221 0
Q ss_pred --CC--CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 028372 66 --TP--GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (210)
Q Consensus 66 --~~--~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~ 141 (210)
.+ ...+|+++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.+||+|+.++. +++++...+++++++.
T Consensus 109 ~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~ 186 (399)
T PRK08206 109 EVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN 186 (399)
T ss_pred HHHHhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc
Confidence 00 01359999999999999999999999999999999999999999999999999996 4888999999988876
Q ss_pred CCeEEcC-----CCCC-ChhHHHHHHhHHHHHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhcC--CCCEEEEEE
Q 028372 142 PDGYLLR-----QFEN-PANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENN--PDIKVVLRV 208 (210)
Q Consensus 142 ~~~~~~~-----~~~n-~~~~~~g~~t~~~Ei~~q~~~---~~d~vv~pvG~Gg~~~Gi~~~~k~~~--~~~~vigv~ 208 (210)
+++|++ ||+| +.+.+.||.|+++||++|+++ .||+||+|+|+||+++|++.++|+++ +.++||+|-
T Consensus 187 -g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Ve 263 (399)
T PRK08206 187 -GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVE 263 (399)
T ss_pred -CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEEC
Confidence 788886 6775 566688999999999999965 59999999999999999999999984 478999984
No 58
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=1.1e-41 Score=293.78 Aligned_cols=199 Identities=18% Similarity=0.226 Sum_probs=169.9
Q ss_pred hhhhHhhhccccCCceeecccccCCCC-ceEEEEeCCCCC-CCchhhHHHHHHHHHHHHc----------------CCCC
Q 028372 5 NAIKRDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEP-CSSVKDRIAYSMIKDAEDK----------------GLIT 66 (210)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~~p-tGS~K~R~a~~~~~~a~~~----------------g~~~ 66 (210)
..++.++..+ .+|||++++.|++.+| .+||+|+|++|+ |||||+|++.+.+..+.++ +.+.
T Consensus 11 ~~~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (376)
T TIGR01747 11 LAFHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIG 89 (376)
T ss_pred HHHHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHH
Confidence 3456777655 8999999999998888 599999999985 8999999999999887552 1111
Q ss_pred --CCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCe
Q 028372 67 --PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG 144 (210)
Q Consensus 67 --~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~ 144 (210)
.+..+|+++|+||||+|+|++|+.+|++|+||||+++++.|+..|+.+||+|+.+++ +++++.+.+++++++. ++
T Consensus 90 ~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~ 166 (376)
T TIGR01747 90 EKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GW 166 (376)
T ss_pred hhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-Cc
Confidence 123679999999999999999999999999999999999999999999999999986 4888988999988876 68
Q ss_pred EEcC-----CCCC--ChhHHHHHHhHHHHHHHhhCC----CCCEEEEccCchhHHHHHHHHHHhcC-CC-CEEEEEE
Q 028372 145 YLLR-----QFEN--PANPKIHYETTGPEIWQDSGG----KVDAFISGIGTGGTVTGAGRFLKENN-PD-IKVVLRV 208 (210)
Q Consensus 145 ~~~~-----~~~n--~~~~~~g~~t~~~Ei~~q~~~----~~d~vv~pvG~Gg~~~Gi~~~~k~~~-~~-~~vigv~ 208 (210)
++++ +|+| |.. +.||+|+++||++|+++ .||+||+|+|+||+++|++.++++.. |+ ++||+|-
T Consensus 167 ~~~~~~~~~~~~~~~~~i-i~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Ve 242 (376)
T TIGR01747 167 VVVQDTAWEGYEKIPTWI-MQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVE 242 (376)
T ss_pred EEeccccccccccCCchH-HHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 8876 4655 443 78999999999999962 69999999999999999999998764 44 5999985
No 59
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=1e-41 Score=288.32 Aligned_cols=189 Identities=23% Similarity=0.247 Sum_probs=159.4
Q ss_pred cccCCceeecccccCCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCCchHHHHHHHHH
Q 028372 14 LIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSGNTGVGLAFIAA 89 (210)
Q Consensus 14 ~~~~TPl~~~~~l~~~~~~~i~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~--ssGN~g~alA~~a~ 89 (210)
...+|||+++++++...|.+||+|+|++||+ ||||+|++.+++.+++++|. +.|+++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 4579999999999887888999999999998 99999999999999999886 678888 56999999999999
Q ss_pred HcCCcEEEEEcCCC-CHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH----hCC-CeEEcCCCCCChhHHHHHHhH
Q 028372 90 ARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILEKGEEILK----KTP-DGYLLRQFENPANPKIHYETT 163 (210)
Q Consensus 90 ~~g~~~~vvvp~~~-~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~n~~~~~~g~~t~ 163 (210)
.+|+++++|+|... +..+...++.+||+|+.++.. ++.+..+.++++++ +.+ .+++.+++.|+.+ ..|+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHH
Confidence 99999999999975 556777889999999999853 24444444444433 322 3456688889988 4566679
Q ss_pred HHHHHHhhCC--CCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 164 GPEIWQDSGG--KVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 164 ~~Ei~~q~~~--~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
++||++|++. .||+||+|+|||||++|++.+||+.+|+++||||.+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~ 204 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAV 204 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 9999999963 699999999999999999999999999999999863
No 60
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=5.2e-42 Score=292.12 Aligned_cols=188 Identities=20% Similarity=0.178 Sum_probs=167.6
Q ss_pred HhhhccccCCceeecccccCCCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028372 9 RDVTELIGNTPMVYLNNVVDGCVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (210)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~~~-~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~ 87 (210)
+.+...+++|||+++++++...|. +||+|+|++|||||||||++.+++..+.++|. .+|+++|+||||.|+|++
T Consensus 15 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~ 89 (328)
T TIGR00260 15 DLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAY 89 (328)
T ss_pred hhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 357778899999999998877776 99999999999999999999999999998875 679999999999999999
Q ss_pred HHHcCCcEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCC--ChhHHHHHHhHH
Q 028372 88 AAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFEN--PANPKIHYETTG 164 (210)
Q Consensus 88 a~~~g~~~~vvvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n--~~~~~~g~~t~~ 164 (210)
|+.+|++|++++|+. .++.|++.++.+||+|+.+++ +++++.+.+++++++. +.+++++ .| |.+ +.||.|++
T Consensus 90 a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-~n~~~~~-~~g~~t~~ 164 (328)
T TIGR00260 90 AGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNS-VNSIPYR-LEGQKTYA 164 (328)
T ss_pred hccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-Ceeeccc-CCCCCeE-eeeehhHH
Confidence 999999999999998 899999999999999999996 4889999999988875 4555554 44 777 67889999
Q ss_pred HHHHHhhCC-CCCEEEEccCchhHHHHHHHHHHhc-------CCCCEEEEEE
Q 028372 165 PEIWQDSGG-KVDAFISGIGTGGTVTGAGRFLKEN-------NPDIKVVLRV 208 (210)
Q Consensus 165 ~Ei~~q~~~-~~d~vv~pvG~Gg~~~Gi~~~~k~~-------~~~~~vigv~ 208 (210)
+||++|+++ .||+||+|+|+||+++|++.+|++. .| ++++|.
T Consensus 165 ~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p--~v~~Ve 214 (328)
T TIGR00260 165 FEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLP--VKRGIQ 214 (328)
T ss_pred HHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCC--ceeEEE
Confidence 999999974 7999999999999999999999974 56 788875
No 61
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=1.7e-41 Score=294.47 Aligned_cols=199 Identities=19% Similarity=0.199 Sum_probs=166.2
Q ss_pred hhhHhhhccccCCceeecccccCCCC-ceEEEEeCCCCC-CCchhhHHHHHHHHHHH--HcCCC--------------C-
Q 028372 6 AIKRDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEP-CSSVKDRIAYSMIKDAE--DKGLI--------------T- 66 (210)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~~-~~i~~K~E~~~p-tGS~K~R~a~~~~~~a~--~~g~~--------------~- 66 (210)
..+.++. .+.+|||++++.|+..+| .+||+|+|++|+ |||||+|++.+.+..+. +.|.. .
T Consensus 31 ~~~~~~~-~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~ 109 (396)
T TIGR03528 31 AFHQSFP-GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIRE 109 (396)
T ss_pred HHHhcCC-CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHh
Confidence 4455554 458999999999998888 699999999985 99999999999998753 22210 0
Q ss_pred -CCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeE
Q 028372 67 -PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGY 145 (210)
Q Consensus 67 -~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~ 145 (210)
.+..+|+++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.+||+|+.++. +++++.+.+++++++. +++
T Consensus 110 ~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~ 186 (396)
T TIGR03528 110 KLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWV 186 (396)
T ss_pred hccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcE
Confidence 012379999999999999999999999999999999999999999999999999985 4888999999998876 788
Q ss_pred EcC-----CCCCCh-hHHHHHHhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhc-CCCC-EEEEEE
Q 028372 146 LLR-----QFENPA-NPKIHYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKEN-NPDI-KVVLRV 208 (210)
Q Consensus 146 ~~~-----~~~n~~-~~~~g~~t~~~Ei~~q~~----~~~d~vv~pvG~Gg~~~Gi~~~~k~~-~~~~-~vigv~ 208 (210)
|++ +|+|.. ..+.||.|+++||++|++ +.||+||+|+|+||+++|++.++++. .+++ +||+|-
T Consensus 187 ~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Ve 261 (396)
T TIGR03528 187 MVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVE 261 (396)
T ss_pred eeccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEc
Confidence 885 676632 235799999999999996 26999999999999999999999554 5554 899884
No 62
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=3.5e-41 Score=287.30 Aligned_cols=197 Identities=22% Similarity=0.211 Sum_probs=167.2
Q ss_pred hhHhhhccccCCceeecccccCCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEeeC--CCchHH
Q 028372 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLIEVT--SGNTGV 82 (210)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~s--sGN~g~ 82 (210)
-++++...+++|||++++.+++..|.+||+|+|++||+ ||||+|++.+++.++.++|. ++||+++ +||||+
T Consensus 5 ~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~ 79 (331)
T PRK03910 5 RFPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHAR 79 (331)
T ss_pred cCCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHH
Confidence 35667889999999999999887788999999999997 59999999999999998885 5678764 489999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCH--------HHHHHHHHcCCEEEEECCCCCHHH-HHHHHHHHHHhCCCeE-EcCCCCC
Q 028372 83 GLAFIAAARGYNLIIVMPSTCSM--------ERRIVLRALGAEIILADSALRFEE-ILEKGEEILKKTPDGY-LLRQFEN 152 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp~~~~~--------~~~~~~~~~Ga~v~~v~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~n 152 (210)
|+|++|+.+|++|++|+|+..+. .+++.|+.+||+|+.++.+++..+ +...++++.++.+..| +.+++.|
T Consensus 80 alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 159 (331)
T PRK03910 80 QTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSN 159 (331)
T ss_pred HHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCC
Confidence 99999999999999999998765 566899999999999987533333 3455666666553333 4567888
Q ss_pred ChhHHHHHHhHHHHHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 153 PANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 153 ~~~~~~g~~t~~~Ei~~q~~~---~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+.+ ..|+.+++.||++|++. .||+||+|+|||||++|++.+||+.+|+++||||..
T Consensus 160 ~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~ 218 (331)
T PRK03910 160 ALG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTV 218 (331)
T ss_pred chh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 988 56888999999999963 699999999999999999999999999999999864
No 63
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.7e-41 Score=287.72 Aligned_cols=199 Identities=19% Similarity=0.190 Sum_probs=165.9
Q ss_pred hhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEE--eeCCCch
Q 028372 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLI--EVTSGNT 80 (210)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~~~~~vv--~~ssGN~ 80 (210)
++-++++....++|||+++++++...|.+||+|+|++||+ ||||+|++.+++.++.++|. ++|+ ++|+|||
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~ 83 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNH 83 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHH
Confidence 4456789999999999999999877788999999999997 89999999999999999886 4565 6899999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCHH-HHHHHHHcCCEEEEECCCCC---HHHHHHHHHHHHHhCCCeEE-cCCCCCChh
Q 028372 81 GVGLAFIAAARGYNLIIVMPSTCSME-RRIVLRALGAEIILADSALR---FEEILEKGEEILKKTPDGYL-LRQFENPAN 155 (210)
Q Consensus 81 g~alA~~a~~~g~~~~vvvp~~~~~~-~~~~~~~~Ga~v~~v~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~n~~~ 155 (210)
|+|+|++|+.+|++|++|+|...+.. +...++.+||+++.++...+ .+.+.+.+++++++.+..|+ .+++.|+.+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~ 163 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG 163 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH
Confidence 99999999999999999999875443 66678999999998874322 33556667777666545555 566788888
Q ss_pred HHHHHHhHHHHHHHhhC---CCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 156 PKIHYETTGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 156 ~~~g~~t~~~Ei~~q~~---~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+..++. ...||++|++ .++|+||+|+|||||++|++.++|..+|+++||||.+
T Consensus 164 ~~g~~~-~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~ 219 (329)
T PRK14045 164 TLGYVR-AVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAV 219 (329)
T ss_pred HHHHHH-HHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 554444 4459999996 3699999999999999999999999999999999975
No 64
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-42 Score=276.07 Aligned_cols=197 Identities=42% Similarity=0.669 Sum_probs=174.2
Q ss_pred hHhhhccccCCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028372 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (210)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~ 87 (210)
.+-+...+++|||+++.+|+...|++|+.|.|.+||.||.|||.|.+++..|+|.|+|.+| -.|++.|+||+|.++|..
T Consensus 40 ~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~g-g~v~EGtaGsTgIslA~v 118 (391)
T KOG1481|consen 40 VSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRG-GTVVEGTAGSTGISLAHV 118 (391)
T ss_pred cchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccC-ceEEecCCCccchhHHHh
Confidence 3467788999999999999999999999999999999999999999999999999999998 679999999999999999
Q ss_pred HHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCC--CHHHHHHHHHHHHHhCC------CeEEcCCCCCChhHHHH
Q 028372 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKTP------DGYLLRQFENPANPKIH 159 (210)
Q Consensus 88 a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~--~~~~~~~~a~~~~~~~~------~~~~~~~~~n~~~~~~g 159 (210)
|..+|++|+++||++.+.+|.+.++.+||+|+.|++.. +-..-...|++.+.+.+ ..+|-+||+|++||..|
T Consensus 119 ~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aH 198 (391)
T KOG1481|consen 119 ARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAH 198 (391)
T ss_pred hhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHH
Confidence 99999999999999999999999999999999988631 11222334444444432 24778999999999999
Q ss_pred HHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCC-CEEE
Q 028372 160 YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPD-IKVV 205 (210)
Q Consensus 160 ~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~-~~vi 205 (210)
|.++|+||+.|.++++|++++.+|||||++|++++||+..+. +.++
T Consensus 199 yetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~ 245 (391)
T KOG1481|consen 199 YETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVF 245 (391)
T ss_pred hcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEE
Confidence 999999999999999999999999999999999999998765 5544
No 65
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=7.2e-41 Score=290.14 Aligned_cols=196 Identities=20% Similarity=0.212 Sum_probs=159.5
Q ss_pred Hhhhcccc-CCceeecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHH
Q 028372 9 RDVTELIG-NTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (210)
Q Consensus 9 ~~i~~~~~-~TPl~~~~~l~~~~~-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~ 86 (210)
+.+..+++ +|||++++++++.+| .+||+|+|++|||||||+|++..++..+.+.|. ...|+++|+||||+|+|+
T Consensus 41 ~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~ 116 (385)
T TIGR00263 41 ELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATAT 116 (385)
T ss_pred HHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHH
Confidence 33455554 899999999998877 799999999999999999999999999988874 245667999999999999
Q ss_pred HHHHcCCcEEEEEcCC-CCH--HHHHHHHHcCCEEEEECCC-CCHHHHH-HHHHHHHHhCCCeEEc-CCCCC----ChhH
Q 028372 87 IAAARGYNLIIVMPST-CSM--ERRIVLRALGAEIILADSA-LRFEEIL-EKGEEILKKTPDGYLL-RQFEN----PANP 156 (210)
Q Consensus 87 ~a~~~g~~~~vvvp~~-~~~--~~~~~~~~~Ga~v~~v~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~n----~~~~ 156 (210)
+|+.+|++|+||+|+. .+. .++++|+.+||+|+.++.. +.++++. +.+++++++.++.+|+ .++.| +.++
T Consensus 117 ~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~ 196 (385)
T TIGR00263 117 AAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMV 196 (385)
T ss_pred HHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHH
Confidence 9999999999999985 343 6788999999999999853 4467764 4445556554455555 44443 3555
Q ss_pred HHHHHhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 157 KIHYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 157 ~~g~~t~~~Ei~~q~~----~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
..|++|++.||++|+. ..||+||+|+|+||+++|++.++.+ .|+++||||..
T Consensus 197 ~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~ 252 (385)
T TIGR00263 197 RDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEA 252 (385)
T ss_pred HHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEe
Confidence 6899999999999983 2589999999999999999998855 69999999964
No 66
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.3e-40 Score=288.17 Aligned_cols=194 Identities=20% Similarity=0.180 Sum_probs=161.1
Q ss_pred hhcccc-CCceeecccccCCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028372 11 VTELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (210)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~~-~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a 88 (210)
..++++ +|||++++++++.+ +.+||+|+|++|||||||+|.+..++..+++.|+ ...|+++|+||||+|+|++|
T Consensus 55 ~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aa 130 (402)
T PRK13028 55 LKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAA 130 (402)
T ss_pred HHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 456676 79999999999888 5899999999999999999999999999999885 24566799999999999999
Q ss_pred HHcCCcEEEEEcCCCCH---HHHHHHHHcCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEEcCC-C----CCChhHHH
Q 028372 89 AARGYNLIIVMPSTCSM---ERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLLRQ-F----ENPANPKI 158 (210)
Q Consensus 89 ~~~g~~~~vvvp~~~~~---~~~~~~~~~Ga~v~~v~~-~~~~~~~~~~a~~-~~~~~~~~~~~~~-~----~n~~~~~~ 158 (210)
+.+|++|+||||+.... .++.+|+.+||+|+.++. ..+++++.+.+.+ +.++.++.+|+.+ . ..|.++..
T Consensus 131 a~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~ 210 (402)
T PRK13028 131 ALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRD 210 (402)
T ss_pred HHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHH
Confidence 99999999999986433 578899999999999984 3468888887754 4555345666632 2 12444456
Q ss_pred HHHhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 159 HYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 159 g~~t~~~Ei~~q~~----~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
|+++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|+++||||..
T Consensus 211 ~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~ 264 (402)
T PRK13028 211 FQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEP 264 (402)
T ss_pred HhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEec
Confidence 99999999999973 3699999999999999999999986 49999999963
No 67
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=8.8e-41 Score=288.87 Aligned_cols=194 Identities=19% Similarity=0.221 Sum_probs=159.6
Q ss_pred hhcccc-CCceeecccccCCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028372 11 VTELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (210)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~~-~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a 88 (210)
..++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++...+..|++.|+ +..|+++|+||||+|+|++|
T Consensus 51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~a 126 (397)
T PRK04346 51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAA 126 (397)
T ss_pred HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 456676 59999999999888 5899999999999999999999999999999885 34566689999999999999
Q ss_pred HHcCCcEEEEEcCCC-C--HHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEEc-CCCCC----ChhHHH
Q 028372 89 AARGYNLIIVMPSTC-S--MERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLL-RQFEN----PANPKI 158 (210)
Q Consensus 89 ~~~g~~~~vvvp~~~-~--~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~n----~~~~~~ 158 (210)
+++|++|+||||+.. + ..++.+|+.+||+|+.++. ..+++++.+.+.+ +.++.++.+|+ .++.+ |.++..
T Consensus 127 a~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~ 206 (397)
T PRK04346 127 ALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRD 206 (397)
T ss_pred HHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHH
Confidence 999999999999853 3 3677889999999999984 3467777665544 45553355555 33322 344456
Q ss_pred HHHhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 159 HYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 159 g~~t~~~Ei~~q~~----~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
||+|++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|++++|||-.
T Consensus 207 ~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~ 260 (397)
T PRK04346 207 FQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEA 260 (397)
T ss_pred hcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEec
Confidence 99999999999984 3699999999999999999999965 89999999963
No 68
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3e-40 Score=300.49 Aligned_cols=194 Identities=19% Similarity=0.213 Sum_probs=166.0
Q ss_pred hhcccc-CCceeecccccCC----CC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHH
Q 028372 11 VTELIG-NTPMVYLNNVVDG----CV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (210)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~----~~--~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a 83 (210)
..+++| +|||+++++|+.. +| .+||+|+|++|||||||+|++.+++..+.+.|+ .+.|+++|+||||+|
T Consensus 319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~A 394 (695)
T PRK13802 319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGVA 394 (695)
T ss_pred HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHH
Confidence 467888 9999999998743 44 799999999999999999999999999999986 357889999999999
Q ss_pred HHHHHHHcCCcEEEEEcCC---CCHHHHHHHHHcCCEEEEECC-CCCHHHHHHHH-HHHHHhCC-CeEEcCCCCCC----
Q 028372 84 LAFIAAARGYNLIIVMPST---CSMERRIVLRALGAEIILADS-ALRFEEILEKG-EEILKKTP-DGYLLRQFENP---- 153 (210)
Q Consensus 84 lA~~a~~~g~~~~vvvp~~---~~~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~~a-~~~~~~~~-~~~~~~~~~n~---- 153 (210)
+|++|+.+|++|+||||+. .+..|+.+|+.+||+|+.++. +.+++++.+.+ +++.++.+ .+|+++++.|+
T Consensus 395 lA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p 474 (695)
T PRK13802 395 TATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFP 474 (695)
T ss_pred HHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcH
Confidence 9999999999999999985 367899999999999999984 33677876555 55666533 45778888654
Q ss_pred hhHHHHHHhHHHHHHHhhCC-----CCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 154 ANPKIHYETTGPEIWQDSGG-----KVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 154 ~~~~~g~~t~~~Ei~~q~~~-----~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
.++..|+.|+|.||++|+.. .||+||+|+||||+++|++.+|++ .|++++|||..
T Consensus 475 ~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~ 534 (695)
T PRK13802 475 AMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEA 534 (695)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEe
Confidence 34568999999999999952 699999999999999999999976 69999999964
No 69
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=2.8e-40 Score=286.34 Aligned_cols=198 Identities=19% Similarity=0.252 Sum_probs=160.5
Q ss_pred hhHhhhcccc-CCceeecccccCCC------CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCc
Q 028372 7 IKRDVTELIG-NTPMVYLNNVVDGC------VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGN 79 (210)
Q Consensus 7 ~~~~i~~~~~-~TPl~~~~~l~~~~------~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN 79 (210)
....+.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|.+...+..|++.|+ ...|+++|+||
T Consensus 55 ~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGN 130 (410)
T PLN02618 55 LAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQ 130 (410)
T ss_pred HHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHH
Confidence 3455678885 89999999999766 4899999999999999999999999999988775 24455667999
Q ss_pred hHHHHHHHHHHcCCcEEEEEcCCC---CHHHHHHHHHcCCEEEEECC-CCCHHHHHH-HHHHHHHhCCCeEEc-CCCC--
Q 028372 80 TGVGLAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADS-ALRFEEILE-KGEEILKKTPDGYLL-RQFE-- 151 (210)
Q Consensus 80 ~g~alA~~a~~~g~~~~vvvp~~~---~~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~-~a~~~~~~~~~~~~~-~~~~-- 151 (210)
||+|+|++|+.+|++|+||||+.. +..|+.+|+.+||+|+.++. +.+++++.. .+++++++.++.+|+ .+..
T Consensus 131 hG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp 210 (410)
T PLN02618 131 HGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGP 210 (410)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCC
Confidence 999999999999999999999853 35677799999999999964 456888874 445676664455666 2221
Q ss_pred C--ChhHHHHHHhHHHHHHHhh----CCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 152 N--PANPKIHYETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 152 n--~~~~~~g~~t~~~Ei~~q~----~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+ +.....++.+++.||.+|+ +..||+||+|+|+||+++|++.+|+. .|+++||||..
T Consensus 211 ~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa 273 (410)
T PLN02618 211 HPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEA 273 (410)
T ss_pred CCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEe
Confidence 2 2334579999999998776 34699999999999999999999965 79999999964
No 70
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=3e-40 Score=278.06 Aligned_cols=189 Identities=37% Similarity=0.487 Sum_probs=158.5
Q ss_pred hhccccCCceeecc--cccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028372 11 VTELIGNTPMVYLN--NVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (210)
Q Consensus 11 i~~~~~~TPl~~~~--~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a 88 (210)
|+..+++|||++++ .++...+.+||+|+|++|||||||+|++.+++.+++++|. ++|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 57889999999975 4445567899999999999999999999999999988864 7799999999999999999
Q ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--CCHHHHHHHHHHH---HHhCCCeEEcCCCCCChhHHHHHHhH
Q 028372 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA--LRFEEILEKGEEI---LKKTPDGYLLRQFENPANPKIHYETT 163 (210)
Q Consensus 89 ~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~--~~~~~~~~~a~~~---~~~~~~~~~~~~~~n~~~~~~g~~t~ 163 (210)
+.+|++|++|+|++.++.++++++.+|++|+.++.. ..++++.+.+++. ....++. ++|+ |+.+...||.++
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~~~ 152 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYATI 152 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEccccccccccccccccccccccccccccc--cCcc-cchhhhhhhhhc
Confidence 999999999999999999999999999999999863 1233444444332 1222222 7777 555568999999
Q ss_pred HHHHHHhhCCCCCE--EEEccCchhHHHHHHHHHHh--cCCCCEEEEEEe
Q 028372 164 GPEIWQDSGGKVDA--FISGIGTGGTVTGAGRFLKE--NNPDIKVVLRVL 209 (210)
Q Consensus 164 ~~Ei~~q~~~~~d~--vv~pvG~Gg~~~Gi~~~~k~--~~~~~~vigv~~ 209 (210)
+.||++|++ .||. ||+|+||||+++|++.+++. . |++++|+|..
T Consensus 153 ~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~ 200 (306)
T PF00291_consen 153 GLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEP 200 (306)
T ss_dssp HHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEE
T ss_pred chhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeec
Confidence 999999997 6665 99999999999999999999 7 9999999864
No 71
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=6.6e-40 Score=282.63 Aligned_cols=199 Identities=20% Similarity=0.187 Sum_probs=158.7
Q ss_pred hhhHhhhcccc-CCceeecccccCCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHH
Q 028372 6 AIKRDVTELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (210)
Q Consensus 6 ~~~~~i~~~~~-~TPl~~~~~l~~~~-~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a 83 (210)
+++....++++ +|||+++++++..+ +.+||+|+|++|||||||+|.+..++..+.++|. ...++++|+||||+|
T Consensus 22 ~~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~vv~~~ssGN~g~a 97 (365)
T cd06446 22 ELRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRVIAETGAGQHGVA 97 (365)
T ss_pred HHHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----CeEEEecCchHHHHH
Confidence 34555565554 99999999998877 5799999999999999999999999999998885 233444799999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCC---HHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHH-HHhC-CCeEEcCCC----CCC
Q 028372 84 LAFIAAARGYNLIIVMPSTCS---MERRIVLRALGAEIILADSA-LRFEEILEKGEEI-LKKT-PDGYLLRQF----ENP 153 (210)
Q Consensus 84 lA~~a~~~g~~~~vvvp~~~~---~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~-~~~~-~~~~~~~~~----~n~ 153 (210)
+|++|+.+|++|++|+|...+ +.++++|+.+||+|+.++.. ..++++...+.+. +++. ..+|+++++ .++
T Consensus 98 lA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~ 177 (365)
T cd06446 98 TATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYP 177 (365)
T ss_pred HHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCch
Confidence 999999999999999998643 36788999999999999864 2456665444333 4432 234444433 233
Q ss_pred hhHHHHHHhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 154 ANPKIHYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 154 ~~~~~g~~t~~~Ei~~q~~----~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
.++++|+.|+++||++|++ ..||+||+|+|+||+++|++.++++ .++++||+|..
T Consensus 178 ~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep 236 (365)
T cd06446 178 NMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEA 236 (365)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcC
Confidence 4668899999999999996 3699999999999999999998877 56999999863
No 72
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=3.9e-40 Score=278.27 Aligned_cols=186 Identities=24% Similarity=0.254 Sum_probs=155.7
Q ss_pred CceeecccccCCC--CceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCCchHHHHHHHHHH
Q 028372 18 TPMVYLNNVVDGC--VARIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSGNTGVGLAFIAAA 90 (210)
Q Consensus 18 TPl~~~~~l~~~~--~~~i~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~--ssGN~g~alA~~a~~ 90 (210)
|||++++.++..+ +.+||+|+|++||+ ||||+|++.+++.++.++|. ++|+++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998776 57999999999999 57799999999999999886 668887 689999999999999
Q ss_pred cCCcEEEEEcCCCC--------HHHHHHHHHcCCEEEEECCCCC--HHHHHHH-HHHHHHhCCCeEE-cCCC-CCChhHH
Q 028372 91 RGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSALR--FEEILEK-GEEILKKTPDGYL-LRQF-ENPANPK 157 (210)
Q Consensus 91 ~g~~~~vvvp~~~~--------~~~~~~~~~~Ga~v~~v~~~~~--~~~~~~~-a~~~~~~~~~~~~-~~~~-~n~~~~~ 157 (210)
+|++|++|+|++.+ ..|+++++.+||+|+.++.+.. ..++.+. ++.+.++.+..|+ .+++ +|+.+ .
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-G 154 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-H
Confidence 99999999999876 4689999999999999986421 1222333 3334444333444 4555 49988 6
Q ss_pred HHHHhHHHHHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 158 IHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 158 ~g~~t~~~Ei~~q~~~---~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
.||.+++.||++|++. .||+||+|+|||||++|++.+||+.+|+++||+|..
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~ 209 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDA 209 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 7899999999999964 699999999999999999999999999999999975
No 73
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.4e-39 Score=283.86 Aligned_cols=196 Identities=20% Similarity=0.221 Sum_probs=159.4
Q ss_pred hhHhhhccccCCceeecccccCCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEE-eeCCCchHHH
Q 028372 7 IKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI-EVTSGNTGVG 83 (210)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~~--~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv-~~ssGN~g~a 83 (210)
+.+.+....++|||+++++|++.+| ++||+|+|++|||||||+|++.+++..+.++|. +.++ ++|+||||.|
T Consensus 58 v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~a 132 (419)
T TIGR01415 58 VLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSA 132 (419)
T ss_pred HHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHH
Confidence 4455555556999999999988776 699999999999999999999999999999986 3455 5688999999
Q ss_pred HHHHHHHcCCcEEEEEcCCC---CHHHHHHHHHcCCEEEEECCCCCH----------------HHHHHHHHHHHHhCC-C
Q 028372 84 LAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADSALRF----------------EEILEKGEEILKKTP-D 143 (210)
Q Consensus 84 lA~~a~~~g~~~~vvvp~~~---~~~~~~~~~~~Ga~v~~v~~~~~~----------------~~~~~~a~~~~~~~~-~ 143 (210)
+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++.+.+- ..+++.+.+.+++.+ .
T Consensus 133 lA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~ 212 (419)
T TIGR01415 133 LSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDT 212 (419)
T ss_pred HHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCC
Confidence 99999999999999999843 568899999999999999964211 113556666666544 4
Q ss_pred eEEcCCCCCChhHHHHHHhHHHHHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhc----CCCCEEEEEEe
Q 028372 144 GYLLRQFENPANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKEN----NPDIKVVLRVL 209 (210)
Q Consensus 144 ~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~---~~d~vv~pvG~Gg~~~Gi~~~~k~~----~~~~~vigv~~ 209 (210)
.|+.+++.|+ +..|+.++|+||++|++. .||+||+|+|+||+++|++.+|++. .++++||+|-.
T Consensus 213 ~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep 283 (419)
T TIGR01415 213 KYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEP 283 (419)
T ss_pred EEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEee
Confidence 5666666553 467999999999999963 4999999999999999999888432 36899999853
No 74
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=7.6e-40 Score=279.72 Aligned_cols=199 Identities=19% Similarity=0.176 Sum_probs=164.7
Q ss_pred hhhhHhhhccccCCceeecccccCCCC--ceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CC
Q 028372 5 NAIKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TS 77 (210)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~--~~i~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~--ss 77 (210)
++.++++...+++|||+++++++...| .+||+|+|++||+ ||||+|.+.+++.+++++|. .+|+++ |+
T Consensus 3 ~~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~ 77 (337)
T PRK12390 3 LQKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQ 77 (337)
T ss_pred CCCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCc
Confidence 345667888999999999999887777 6999999999988 78899999999999999986 667877 88
Q ss_pred CchHHHHHHHHHHcCCcEEEEEcCCCC--------HHHHHHHHHcCCEEEEECCCC--CHHHHHHHHHHHHHhCCC-eEE
Q 028372 78 GNTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKTPD-GYL 146 (210)
Q Consensus 78 GN~g~alA~~a~~~g~~~~vvvp~~~~--------~~~~~~~~~~Ga~v~~v~~~~--~~~~~~~~a~~~~~~~~~-~~~ 146 (210)
||||+|+|++|+.+|++|++|++...+ ..|+..++.+||+|+.++.+. .+.++.+.+.+..++..+ .|.
T Consensus 78 GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (337)
T PRK12390 78 SNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYA 157 (337)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEE
Confidence 999999999999999999999876544 336778999999999998742 234666666666666334 444
Q ss_pred cCCCCC--ChhHHHHHHhHHHHHHHh---hCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 147 LRQFEN--PANPKIHYETTGPEIWQD---SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 147 ~~~~~n--~~~~~~g~~t~~~Ei~~q---~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
++.+.+ +.. ..|+.++++||++| ++.+||+||+|+|||||++|++.+||+..|++|||||.+
T Consensus 158 ~~~~~~~~~~~-~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~ 224 (337)
T PRK12390 158 IPAGASDHPLG-GLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDA 224 (337)
T ss_pred eCCcCCCCCcc-cHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEe
Confidence 555533 333 56888999999998 444799999999999999999999999999999999975
No 75
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=1.3e-39 Score=278.26 Aligned_cols=198 Identities=19% Similarity=0.182 Sum_probs=164.5
Q ss_pred hhhHhhhccccCCceeecccccCCCCc--eEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCC
Q 028372 6 AIKRDVTELIGNTPMVYLNNVVDGCVA--RIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSG 78 (210)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~~~--~i~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~--ssG 78 (210)
.-++++...+++|||++++++++.+|. +||+|+|++||+ ||||+|++.+++.+++++|. ++|+++ |+|
T Consensus 3 ~~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~g 77 (337)
T TIGR01274 3 SRFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQS 77 (337)
T ss_pred CcCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcc
Confidence 345678889999999999999887764 999999999986 78899999999999999986 667876 779
Q ss_pred chHHHHHHHHHHcCCcEEEEEcCCCC--------HHHHHHHHHcCCEEEEECCCC--CHHHHHHHHHHHHHhC-CCeEEc
Q 028372 79 NTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKT-PDGYLL 147 (210)
Q Consensus 79 N~g~alA~~a~~~g~~~~vvvp~~~~--------~~~~~~~~~~Ga~v~~v~~~~--~~~~~~~~a~~~~~~~-~~~~~~ 147 (210)
|||+|+|++|+.+|++|++|+|+..+ +.|+.+|+.+||+|+.++... ...+....+.+.+++. +..|++
T Consensus 78 N~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i 157 (337)
T TIGR01274 78 NQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPI 157 (337)
T ss_pred hHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEe
Confidence 99999999999999999999998542 589999999999999998642 1234555555555554 344666
Q ss_pred CCCC--CChhHHHHHHhHHHHHHHhh---CCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 148 RQFE--NPANPKIHYETTGPEIWQDS---GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 148 ~~~~--n~~~~~~g~~t~~~Ei~~q~---~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+.+. |+.. ..|+.++++||++|+ +..||+||+|+|||||++|++.++++.+|+++||||.+
T Consensus 158 ~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~ 223 (337)
T TIGR01274 158 PAGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDA 223 (337)
T ss_pred CCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEe
Confidence 6653 3544 568889999999995 34799999999999999999999999999999999975
No 76
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=3.6e-39 Score=281.62 Aligned_cols=192 Identities=21% Similarity=0.218 Sum_probs=157.3
Q ss_pred hccccCCceeecccccCCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEe-eCCCchHHHHHHHH
Q 028372 12 TELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLAFIA 88 (210)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~~--~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~-~ssGN~g~alA~~a 88 (210)
....++|||+++++|+..+| .+||+|+|++|||||||+|++..++..+.++|. ..+++ .|+||||.|+|++|
T Consensus 72 ~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aa 146 (427)
T PRK12391 72 YRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALAC 146 (427)
T ss_pred HcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHH
Confidence 45678999999999988776 699999999999999999999999999999986 34554 67899999999999
Q ss_pred HHcCCcEEEEEcCC---CCHHHHHHHHHcCCEEEEECCCCC----------------HHHHHHHHHHHHHhCCCeEEcCC
Q 028372 89 AARGYNLIIVMPST---CSMERRIVLRALGAEIILADSALR----------------FEEILEKGEEILKKTPDGYLLRQ 149 (210)
Q Consensus 89 ~~~g~~~~vvvp~~---~~~~~~~~~~~~Ga~v~~v~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~ 149 (210)
+.+|++|+||||+. .++.|+++|+.+||+|+.++.+.+ +..+++.+.+.+.+.++.+|..+
T Consensus 147 a~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~ 226 (427)
T PRK12391 147 ALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALG 226 (427)
T ss_pred HHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcC
Confidence 99999999999974 367889999999999999986421 11256667777766545455544
Q ss_pred CCCChhHHHHHHhHHHHHHHhhC---CCCCEEEEccCchhHHHHHHHHHHh---cC-CCCEEEEEEe
Q 028372 150 FENPANPKIHYETTGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKE---NN-PDIKVVLRVL 209 (210)
Q Consensus 150 ~~n~~~~~~g~~t~~~Ei~~q~~---~~~d~vv~pvG~Gg~~~Gi~~~~k~---~~-~~~~vigv~~ 209 (210)
+. ..++..||.++++||++|++ ..||+||+|+|+||+++|++.+|.. .+ ++++||+|..
T Consensus 227 s~-~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp 292 (427)
T PRK12391 227 SV-LNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEP 292 (427)
T ss_pred CC-CcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEee
Confidence 33 23457899999999999995 3699999999999999999997732 34 8999999863
No 77
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.2e-38 Score=287.82 Aligned_cols=194 Identities=22% Similarity=0.211 Sum_probs=159.3
Q ss_pred hhcccc-CCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHH
Q 028372 11 VTELIG-NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (210)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~ 89 (210)
..++.+ +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..+.+.|+ ...++++|+||||+|+|++|+
T Consensus 264 ~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa 339 (610)
T PRK13803 264 LQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACA 339 (610)
T ss_pred HHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHH
Confidence 455565 899999999998888999999999999999999999999999988775 245667899999999999999
Q ss_pred HcCCcEEEEEcCCC---CHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEEcCCCC---C--ChhHHHH
Q 028372 90 ARGYNLIIVMPSTC---SMERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLLRQFE---N--PANPKIH 159 (210)
Q Consensus 90 ~~g~~~~vvvp~~~---~~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~~a~~-~~~~~~~~~~~~~~~---n--~~~~~~g 159 (210)
.+|++|++|||... ...++.+|+.+||+|+.++. ..++.++.+.+.+ +..+.++.+|+.++. + |.++..|
T Consensus 340 ~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~ 419 (610)
T PRK13803 340 LFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYF 419 (610)
T ss_pred HcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHH
Confidence 99999999999764 35688899999999999985 3457777554444 434444667765432 2 3443458
Q ss_pred HHhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 160 YETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 160 ~~t~~~Ei~~q~~----~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
++|++.||.+|+. ..||+||+|+||||+++|++.+|++ .|++++|||-.
T Consensus 420 ~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~ 472 (610)
T PRK13803 420 QSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEA 472 (610)
T ss_pred hhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEec
Confidence 9999999999984 2599999999999999999999964 79999999863
No 78
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=1.2e-38 Score=276.72 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=152.8
Q ss_pred ccccCCceeecccccCCCCc-eEEEEe-------CCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHH
Q 028372 13 ELIGNTPMVYLNNVVDGCVA-RIAAKL-------ETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (210)
Q Consensus 13 ~~~~~TPl~~~~~l~~~~~~-~i~~K~-------E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~al 84 (210)
...+.|||+++++|++.+|. ++|+|+ |++|||||||||++.+++..+.+.|. +.|+++|+||||+|+
T Consensus 58 ~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~al 132 (398)
T TIGR03844 58 RTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRAF 132 (398)
T ss_pred CCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHHH
Confidence 45667999999999988887 999954 55899999999999999999998874 779999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHH
Q 028372 85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (210)
Q Consensus 85 A~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 164 (210)
|++|+++|++|+||||++++..+...++.+|++|+.+++ +++++.+.+++++++. +++..++++||.. ++|++|++
T Consensus 133 A~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti~ 208 (398)
T TIGR03844 133 AEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTVM 208 (398)
T ss_pred HHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHHH
Confidence 999999999999999998654444445788999999986 4899999999998876 5655566678886 79999999
Q ss_pred HHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhc
Q 028372 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKEN 198 (210)
Q Consensus 165 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~ 198 (210)
+||+||++..||+||+|+|+|+.+.|++.+++++
T Consensus 209 ~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l 242 (398)
T TIGR03844 209 LDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRL 242 (398)
T ss_pred HHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHH
Confidence 9999999644999999999999899999998873
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-33 Score=241.10 Aligned_cols=186 Identities=25% Similarity=0.260 Sum_probs=167.2
Q ss_pred hhhccccCCceeecccccCCCCc---eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHH
Q 028372 10 DVTELIGNTPMVYLNNVVDGCVA---RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (210)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~~~---~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~ 86 (210)
......+.||+++.+.+...++. ++|+|.|++|||||||||++..++..+.+.|. .+|+++||||+|.|+|+
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 44667888999999888776663 59999999999999999999999999999884 56999999999999999
Q ss_pred HHHHcCCcEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHH
Q 028372 87 IAAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP 165 (210)
Q Consensus 87 ~a~~~g~~~~vvvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 165 (210)
++.+.|++|.|++|.. .+..|+.+|..+|++++.++++ +|++++.+++++++. ++++....-||.. +.|+.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~--fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGN--FDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcCc--HHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHh
Confidence 9999999999999998 9999999999999999999974 899999999999866 5677777788887 789999999
Q ss_pred HHHHhhC-CCCCEEEEccCchhHHHHHHHHHHhcCCCCEE
Q 028372 166 EIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKV 204 (210)
Q Consensus 166 Ei~~q~~-~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~v 204 (210)
||++|++ ..||+|++|+|+||.+.|++.++++..|.=++
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i 259 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKI 259 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccch
Confidence 9999997 47999999999999999999999998775433
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.96 E-value=1.9e-28 Score=201.04 Aligned_cols=192 Identities=19% Similarity=0.232 Sum_probs=159.7
Q ss_pred hcccc-CCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHH
Q 028372 12 TELIG-NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (210)
Q Consensus 12 ~~~~~-~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~ 90 (210)
.++.+ +|||+..++|++.+|++||+|+|++|+||+||...+...+.-|++.|+ ++.|.+...|.||.|.|.+|++
T Consensus 50 ~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~ 125 (396)
T COG0133 50 KDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAAL 125 (396)
T ss_pred HHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHH
Confidence 44444 599999999999999999999999999999999999999999999997 5677788889999999999999
Q ss_pred cCCcEEEEEcCC---CCHHHHHHHHHcCCEEEEEC-CCCCHHHHHHHH-HHHHHhCCCeEEcCCC-----CCChhHHHHH
Q 028372 91 RGYNLIIVMPST---CSMERRIVLRALGAEIILAD-SALRFEEILEKG-EEILKKTPDGYLLRQF-----ENPANPKIHY 160 (210)
Q Consensus 91 ~g~~~~vvvp~~---~~~~~~~~~~~~Ga~v~~v~-~~~~~~~~~~~a-~~~~~~~~~~~~~~~~-----~n~~~~~~g~ 160 (210)
+|++|+|||-.. -...+.-.|+.+||+|+.|. ++.++.|+.+.| +.....-+..+|+-.. --|......+
T Consensus 126 fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ 205 (396)
T COG0133 126 FGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQ 205 (396)
T ss_pred hCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHH
Confidence 999999999864 25677889999999999987 466788888776 4455555567777433 1233445588
Q ss_pred HhHHHHHHHhh----CCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 161 ETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 161 ~t~~~Ei~~q~----~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
+.|+.|.-+|+ +.-||+||.|||+|+.+.|+...|.. .+++++|||-
T Consensus 206 ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvE 256 (396)
T COG0133 206 SVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVE 256 (396)
T ss_pred HHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEec
Confidence 99999998886 34599999999999999999888854 4789999985
No 81
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.96 E-value=1.3e-27 Score=195.41 Aligned_cols=200 Identities=21% Similarity=0.225 Sum_probs=164.2
Q ss_pred hhhhHhhhccccCCceeecccccCCCCceEEEEeCCCCC--CCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCC--Cch
Q 028372 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEP--CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS--GNT 80 (210)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~~p--tGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ss--GN~ 80 (210)
+.-++|+.....+||+..+++++...|.+||+|+||+.+ .|.+|.|+..+++.+|..+|. +++|+..+ +||
T Consensus 3 l~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSNh 77 (323)
T COG2515 3 LSRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSNH 77 (323)
T ss_pred cccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchhH
Confidence 456788889999999999999999999999999999965 369999999999999998885 77888866 999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCC----CHHHHHHHHHcCCEEEEECCCCCH--HH-HHHHHHHHHHhCCCeEEcCC-CCC
Q 028372 81 GVGLAFIAAARGYNLIIVMPSTC----SMERRIVLRALGAEIILADSALRF--EE-ILEKGEEILKKTPDGYLLRQ-FEN 152 (210)
Q Consensus 81 g~alA~~a~~~g~~~~vvvp~~~----~~~~~~~~~~~Ga~v~~v~~~~~~--~~-~~~~a~~~~~~~~~~~~~~~-~~n 152 (210)
.+++|++|+++|++|++++.... ...++...+.+|+++..++...++ .. +...++++.++....|.++. ..|
T Consensus 78 ~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~ 157 (323)
T COG2515 78 VRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSS 157 (323)
T ss_pred HHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcC
Confidence 99999999999999999998754 344677778899999999976544 22 23334444444434444433 346
Q ss_pred ChhHHHHHHhHHHHHHHhhC--CCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEeC
Q 028372 153 PANPKIHYETTGPEIWQDSG--GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVLL 210 (210)
Q Consensus 153 ~~~~~~g~~t~~~Ei~~q~~--~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~l 210 (210)
|.. .-||...+.||.+|.. -++|.||+++|||||.||+..++...+|+++|||+.+.
T Consensus 158 ~~g-~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~ 216 (323)
T COG2515 158 PLG-ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVS 216 (323)
T ss_pred ccc-cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeec
Confidence 654 5689999999999986 57999999999999999999999999999999999763
No 82
>PRK09225 threonine synthase; Validated
Probab=99.93 E-value=1.1e-24 Score=191.84 Aligned_cols=178 Identities=16% Similarity=0.116 Sum_probs=144.3
Q ss_pred CCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHH---HHHHHHHcCCCCCCCeEEEeeCCCchHHHH-HHHHHHcC
Q 028372 17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYS---MIKDAEDKGLITPGKTTLIEVTSGNTGVGL-AFIAAARG 92 (210)
Q Consensus 17 ~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~---~~~~a~~~g~~~~~~~~vv~~ssGN~g~al-A~~a~~~g 92 (210)
.+||.++.. ++|+....++||||||||++.. ++..+.+ +. ...|+++||||+|.|+ |.++.+.|
T Consensus 88 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLDD-------NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeCC-------CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 478887642 5899888999999999999988 7888876 42 3789999999999998 67788999
Q ss_pred CcEEEEEcCC-CCHHHHHHHHHc-CCEEEEECCCCCHHHHHHHHHHHHHhC-----CCeEEcCCCCCChhHHHHHHhHHH
Q 028372 93 YNLIIVMPST-CSMERRIVLRAL-GAEIILADSALRFEEILEKGEEILKKT-----PDGYLLRQFENPANPKIHYETTGP 165 (210)
Q Consensus 93 ~~~~vvvp~~-~~~~~~~~~~~~-Ga~v~~v~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~g~~t~~~ 165 (210)
++|+|++|++ +++.++++|..+ |++|+.+.-+++++++++.++++..+. -+++-.+. -|+.. +.++.+.++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~gQ~~yyf 233 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANS-INIGR-LLAQIVYYF 233 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEec-cCHHH-HHHHHHHHH
Confidence 9999999996 899999999999 998854444456999999988876651 13444444 47776 679999999
Q ss_pred HHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 166 EIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 166 Ei~~q~~~---~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
|+++|+.+ .||.|+||+|+||.+.|.+.+.+...|--|+|+++
T Consensus 234 ea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~ 279 (462)
T PRK09225 234 YAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT 279 (462)
T ss_pred HHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe
Confidence 99999963 38999999999999999999955545644777653
No 83
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.92 E-value=9.6e-24 Score=186.00 Aligned_cols=178 Identities=14% Similarity=0.109 Sum_probs=143.3
Q ss_pred CCceeecccccCCCCceEEEEeCCCCCCCchhhHHHHHH---HHHHHHcCCCCCCCeEEEeeCCCchHHH-HHHHHHHcC
Q 028372 17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSM---IKDAEDKGLITPGKTTLIEVTSGNTGVG-LAFIAAARG 92 (210)
Q Consensus 17 ~TPl~~~~~l~~~~~~~i~~K~E~~~ptGS~K~R~a~~~---~~~a~~~g~~~~~~~~vv~~ssGN~g~a-lA~~a~~~g 92 (210)
.+||.++.. ++|++.+.++||||||||++..+ +..+.++.. +...|+++||||+|.| ++.++.+.|
T Consensus 87 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~---~~~~Il~ATSGdTG~Aa~aaf~~~~g 156 (460)
T cd01560 87 IAPLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRN---ERITILVATSGDTGSAAIEGFRGKPN 156 (460)
T ss_pred ccceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcC---CCeEEEEcCCCcHHHHHHHHHhCcCC
Confidence 378877642 68999999999999999999876 666655411 2478999999999999 478899999
Q ss_pred CcEEEEEcCC-CCHHHHHHHHHcCC---EEEEECCCCCHHHHHHHHHHHHHhC-----CCeEEcCCCCCChhHHHHHHhH
Q 028372 93 YNLIIVMPST-CSMERRIVLRALGA---EIILADSALRFEEILEKGEEILKKT-----PDGYLLRQFENPANPKIHYETT 163 (210)
Q Consensus 93 ~~~~vvvp~~-~~~~~~~~~~~~Ga---~v~~v~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~g~~t~ 163 (210)
++|+|++|.+ +++.++.+|..+|+ +++.|++ ++++|++.++++.++. -+++-.+. -|+.. +.++.+.
T Consensus 157 i~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~~Q~~y 232 (460)
T cd01560 157 VDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWAR-ILAQIVY 232 (460)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHH-HHHHHHH
Confidence 9999999996 99999999999996 7777775 5899999988876542 13343343 46666 6799999
Q ss_pred HHHHHHhhCC----CCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 164 GPEIWQDSGG----KVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 164 ~~Ei~~q~~~----~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
++|+++|+.. .||.|+||+|+||.+.|.+.+.+...|--++|+++
T Consensus 233 yf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~ 281 (460)
T cd01560 233 YFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVAT 281 (460)
T ss_pred HHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEe
Confidence 9999999963 58999999999999999999976656655777653
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.92 E-value=2.4e-24 Score=177.46 Aligned_cols=197 Identities=20% Similarity=0.219 Sum_probs=154.5
Q ss_pred hhHhhhccccCCceeecccccCCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHH
Q 028372 7 IKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (210)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~~--~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~al 84 (210)
+.+.....-++|||++.++|.+.++ ++||.|.|+..||||||...|......+..+|. +..+.+...|.+|.|+
T Consensus 68 v~e~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~TETGAGQWGsAl 143 (432)
T COG1350 68 VREAYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLTTETGAGQWGSAL 143 (432)
T ss_pred HHHHHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeeecccCCchHHHHH
Confidence 4444444557999999999987665 799999999999999999999999999999986 2444455669999999
Q ss_pred HHHHHHcCCcEEEEEcCC---CCHHHHHHHHHcCCEEEEECCCCC----------------HHHHHHHHHHHHHhCCCeE
Q 028372 85 AFIAAARGYNLIIVMPST---CSMERRIVLRALGAEIILADSALR----------------FEEILEKGEEILKKTPDGY 145 (210)
Q Consensus 85 A~~a~~~g~~~~vvvp~~---~~~~~~~~~~~~Ga~v~~v~~~~~----------------~~~~~~~a~~~~~~~~~~~ 145 (210)
+++|+.+|++|+|||-.. ..+-++.+|+.+||+|+..+.+.+ +-=+++.|-+.+-++++..
T Consensus 144 slA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~k 223 (432)
T COG1350 144 SLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTK 223 (432)
T ss_pred HHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCce
Confidence 999999999999999763 467888999999999998875421 1225667767666666677
Q ss_pred EcCCCCCChhHHHHHHhHHHHHHHhh---CCCCCEEEEccCchhHHHHHHHHHHhc--C--CCCEEEEEE
Q 028372 146 LLRQFENPANPKIHYETTGPEIWQDS---GGKVDAFISGIGTGGTVTGAGRFLKEN--N--PDIKVVLRV 208 (210)
Q Consensus 146 ~~~~~~n~~~~~~g~~t~~~Ei~~q~---~~~~d~vv~pvG~Gg~~~Gi~~~~k~~--~--~~~~vigv~ 208 (210)
|..+.--.. ...|+..+|.|..+|+ +..||++|.|||+|+.++|+..-|-.. . ..+++|+|-
T Consensus 224 Y~lGSVlnh-vllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAve 292 (432)
T COG1350 224 YSLGSVLNH-VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVE 292 (432)
T ss_pred ecchhHHHH-HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeC
Confidence 766543333 2679999999995554 567999999999999999998877432 1 237788763
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.91 E-value=3.7e-24 Score=177.70 Aligned_cols=198 Identities=18% Similarity=0.173 Sum_probs=148.1
Q ss_pred hhhhHhhh-ccccCCceeecccccCCC--CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchH
Q 028372 5 NAIKRDVT-ELIGNTPMVYLNNVVDGC--VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTG 81 (210)
Q Consensus 5 ~~~~~~i~-~~~~~TPl~~~~~l~~~~--~~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g 81 (210)
+.-+..|. -.-++|||++.++|.+.+ |++||+|+|++||+||||...+...+..+.+.|+ +..|.+...|.||
T Consensus 109 ~ee~~eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhG 184 (477)
T KOG1395|consen 109 WEEFLEIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHG 184 (477)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccc
Confidence 34444444 445679999999998765 4899999999999999999999999999999987 4566677789999
Q ss_pred HHHHHHHHHcCCcEEEEEcCC---CCHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHH-hCCCeEEcCCCCC----
Q 028372 82 VGLAFIAAARGYNLIIVMPST---CSMERRIVLRALGAEIILADS-ALRFEEILEKGEEILK-KTPDGYLLRQFEN---- 152 (210)
Q Consensus 82 ~alA~~a~~~g~~~~vvvp~~---~~~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~~a~~~~~-~~~~~~~~~~~~n---- 152 (210)
.|+|.+|+++|++|+|+|-.+ ..+.++-+||.+||+|+.+.. ...+.++-+.+-++.- ..+-.+|+-....
T Consensus 185 vatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp 264 (477)
T KOG1395|consen 185 VATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHP 264 (477)
T ss_pred hHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCC
Confidence 999999999999999999764 367888999999999999874 3345555555544322 2223445433321
Q ss_pred -ChhHHHHHHhHHHHHHHhh----CCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEE
Q 028372 153 -PANPKIHYETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLR 207 (210)
Q Consensus 153 -~~~~~~g~~t~~~Ei~~q~----~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv 207 (210)
|......+++|+-|-..|. +..||+||.|+|+|+..+|+..-|..-. .++.|||
T Consensus 265 ~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~dk-~v~~igv 323 (477)
T KOG1395|consen 265 YPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRDK-SVGMIGV 323 (477)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhccc-hhheeee
Confidence 2222345678888876664 4569999999999999999998886432 3555554
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.80 E-value=1.1e-18 Score=143.02 Aligned_cols=191 Identities=18% Similarity=0.258 Sum_probs=156.9
Q ss_pred hccccCCceeeccccc--------CCCCceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCC---------
Q 028372 12 TELIGNTPMVYLNNVV--------DGCVARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPG--------- 68 (210)
Q Consensus 12 ~~~~~~TPl~~~~~l~--------~~~~~~i~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~~--------- 68 (210)
..++...||++.+.+. +....++|+|+++.-| +||+|.|+..|-+.. |.+.|.++-.
T Consensus 73 ~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~ 152 (443)
T COG3048 73 TGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSE 152 (443)
T ss_pred cCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcH
Confidence 3456678888887543 2333589999999998 699999998887753 4566665432
Q ss_pred -------CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 028372 69 -------KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (210)
Q Consensus 69 -------~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~ 141 (210)
.-.|...|+||.|.++..+++.+|+++++.|+.++.++|.+++|..|.+|+..+. +|..+.+.-++-++.+
T Consensus 153 ~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~D 230 (443)
T COG3048 153 EFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESD 230 (443)
T ss_pred HHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccC
Confidence 2367889999999999999999999999999999999999999999999999985 4888999999999999
Q ss_pred CCeEEcCCCCCChhHHHHHHhHHHHHHHhhC--------CCCCEEEEccCchhHHHHHHHHHHhcC-CCCEEE
Q 028372 142 PDGYLLRQFENPANPKIHYETTGPEIWQDSG--------GKVDAFISGIGTGGTVTGAGRFLKENN-PDIKVV 205 (210)
Q Consensus 142 ~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~--------~~~d~vv~pvG~Gg~~~Gi~~~~k~~~-~~~~vi 205 (210)
|.+||++.-++... .-||...+..+-.|++ ..|-.|..|+|-||.-.|++.++|... .++.++
T Consensus 231 P~c~FiDDE~S~~L-FLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~Vhcf 302 (443)
T COG3048 231 PNCFFIDDENSRTL-FLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCF 302 (443)
T ss_pred CceEEecccchhhh-hhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEE
Confidence 99999987544443 6799999999999984 246689999999999999999999764 455554
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=93.68 E-value=0.58 Score=36.17 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCcE-EEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHH
Q 028372 81 GVGLAFIAAARGYNL-IIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH 159 (210)
Q Consensus 81 g~alA~~a~~~g~~~-~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 159 (210)
|..+.++++.+|.++ .-+.+.+.-..-.+.+...|-.|.+++++ -+.....++.+.+..|+.-.+.-+..+.+ ..-
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFD-EEE 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCC-hhh
Confidence 467889999999887 33333333455566677788899999975 24445566777777765433321111122 111
Q ss_pred HHhHHHHHHHhhCCCCCEEEEccCchhH
Q 028372 160 YETTGPEIWQDSGGKVDAFISGIGTGGT 187 (210)
Q Consensus 160 ~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~ 187 (210)
...+..+|-+ .+||.|+++.|+---
T Consensus 90 ~~~i~~~I~~---~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 90 EEAIINRINA---SGPDIVFVGLGAPKQ 114 (172)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCHH
Confidence 2233333322 368999999998643
No 88
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.67 E-value=1.1 Score=32.16 Aligned_cols=41 Identities=27% Similarity=0.288 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 028372 81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (210)
Q Consensus 81 g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~ 124 (210)
|......|+.+|.+++++.+ .+.+++.++.+|++.+....+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~ 43 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSD 43 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTT
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccccc
Confidence 55666677778855444443 566777777788766655543
No 89
>PRK12743 oxidoreductase; Provisional
Probab=92.46 E-value=1.8 Score=34.97 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=37.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~ 122 (210)
++.+|+.++|.-|.++|......|.+++++...+.. ....+.++.+|.++..+.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQ 58 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEE
Confidence 367888889999999999988899988776544322 222345556676666544
No 90
>PRK05993 short chain dehydrogenase; Provisional
Probab=92.45 E-value=3.3 Score=33.97 Aligned_cols=52 Identities=23% Similarity=0.208 Sum_probs=36.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
+..+|+..+|.-|.++|......|.+++++... ..+.+.+...+.+.+.++-
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDY 56 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccC
Confidence 467888889999999998888889987776543 3334444445555555553
No 91
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.20 E-value=3.8 Score=38.31 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=39.7
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
..++....|..|+.+|-.-+..|++++++ +.++.+.+.++.+|.+++.=|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeC
Confidence 56888999999999999988889998776 2345567777777877766654
No 92
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.89 E-value=3.1 Score=33.60 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=37.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+..++.-|.++|......|.+++++-... .+...+.++..|.++..+.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~ 61 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFIT 61 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEE
Confidence 4778999999999999999888999987764332 2333445566677766544
No 93
>PRK08628 short chain dehydrogenase; Provisional
Probab=91.65 E-value=3.6 Score=33.13 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=37.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+..+|-.|.++|..-...|.+++++..+.......+.++..|.++..+.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQ 61 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEE
Confidence 477888888999999999988889998877654333333344555566655444
No 94
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=91.42 E-value=6 Score=35.76 Aligned_cols=119 Identities=11% Similarity=0.117 Sum_probs=72.9
Q ss_pred HHHHHHHcCCcEEEEE-----------cCCCCHHHHHHHHHcCCEEEEECCCC---C-HHHHHHHHHHHHHhCCCeE---
Q 028372 84 LAFIAAARGYNLIIVM-----------PSTCSMERRIVLRALGAEIILADSAL---R-FEEILEKGEEILKKTPDGY--- 145 (210)
Q Consensus 84 lA~~a~~~g~~~~vvv-----------p~~~~~~~~~~~~~~Ga~v~~v~~~~---~-~~~~~~~a~~~~~~~~~~~--- 145 (210)
+..+|+..|.++.+.. |..+...........|++.+....+. . -.++.+...+.+++-+..+
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence 4557899999988875 34455667777777899998886542 1 2345555555444322211
Q ss_pred --EcCCCC-CC--hhHHHHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 146 --LLRQFE-NP--ANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 146 --~~~~~~-n~--~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
|-.+.. .. ..........+.++.+.+ +.++||+..-||.++--+++ ..|++.|++++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT 403 (473)
T TIGR01064 342 TNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVT 403 (473)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEc
Confidence 111100 00 011223444556777776 46899999999999655544 58999999986
No 95
>PRK08226 short chain dehydrogenase; Provisional
Probab=91.38 E-value=3.1 Score=33.64 Aligned_cols=54 Identities=28% Similarity=0.179 Sum_probs=35.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
++.+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVV 60 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEE
Confidence 477888899999999999988889987766443221122233344455554443
No 96
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.07 E-value=3.6 Score=35.17 Aligned_cols=58 Identities=28% Similarity=0.463 Sum_probs=44.4
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
.+.+++|++.+|.+.+|.-|..+.-.|+.+|..+++.+. +..|.+.++.+||+.+..-
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~y 194 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVINY 194 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEcC
Confidence 466778888899999999999999999999984444433 3356668899999766653
No 97
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=91.05 E-value=4.4 Score=33.79 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=42.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v 121 (210)
+.+.+++|+..+|...+|..|.++.-.|+.+|.+++++.+ ++.+.+.++.+|++-+..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~~~~~~l~~~Ga~~vi~ 194 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SDDKVAWLKELGFDAVFN 194 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4455677767777777899999999999999998655543 456777788888854443
No 98
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=90.92 E-value=2.7 Score=32.42 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCcEEEEEcC-CCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEc---CCCCCChhH
Q 028372 81 GVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLL---RQFENPANP 156 (210)
Q Consensus 81 g~alA~~a~~~g~~~~vvvp~-~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~n~~~~ 156 (210)
|..+.++++.+|.+..--++. +.-..-.+.+...+..|.+++.. -+.....++.+.++.|+...+ +++.++..
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~- 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFGPEE- 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCChhh-
Confidence 467889999999873222222 12234455566678999999875 244444556677777764433 33332221
Q ss_pred HHHHHhHHHHHHHhhC-CCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEE
Q 028372 157 KIHYETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLR 207 (210)
Q Consensus 157 ~~g~~t~~~Ei~~q~~-~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv 207 (210)
. .+|++++. .+||.|++++|+---= -.....+...+..-+++|
T Consensus 88 ---~----~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 88 ---E----EEIIERINASGADILFVGLGAPKQE-LWIARHKDRLPVPVAIGV 131 (171)
T ss_pred ---H----HHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEe
Confidence 1 12444443 3699999999985432 223334444444444443
No 99
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=90.89 E-value=6.2 Score=31.78 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=38.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
+..+|+..+|.-|.++|......|.+++++ .........+.++..+.++..+..
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~ 64 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGI-NIVEPTETIEQVTALGRRFLSLTA 64 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEe-cCcchHHHHHHHHhcCCeEEEEEC
Confidence 477899999999999999988899987765 322234444555666766665543
No 100
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=90.80 E-value=11 Score=33.25 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=37.1
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHcCCCCC-CCeEEEeeCCCchHHH--HHHHHHHcCCcEEEEE
Q 028372 39 ETMEPCSSVKDRIAYSMIKDAEDKGLITP-GKTTLIEVTSGNTGVG--LAFIAAARGYNLIIVM 99 (210)
Q Consensus 39 E~~~ptGS~K~R~a~~~~~~a~~~g~~~~-~~~~vv~~ssGN~g~a--lA~~a~~~g~~~~vvv 99 (210)
-+.+|.|.- +.....+...+.+|.+.. ++..+|+..++..|.| +|.+. ..|.+++++.
T Consensus 13 ~~~hp~gc~--~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 13 TTAHPVGCE--ANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCCHHHH--HHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 355788863 345677777777877644 3566777777666666 44455 5677766654
No 101
>PRK06182 short chain dehydrogenase; Validated
Probab=90.79 E-value=6.7 Score=31.94 Aligned_cols=52 Identities=25% Similarity=0.272 Sum_probs=36.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
+..+|+.++|.-|.++|......|.+++++... ..+++.+...+.+++.++-
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv 55 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDV 55 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeC
Confidence 467888888999999999988889988776543 2334444445556555554
No 102
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=90.77 E-value=5.4 Score=31.74 Aligned_cols=50 Identities=30% Similarity=0.472 Sum_probs=40.9
Q ss_pred EEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
+|...+|+.|..++.+....+.++++++++. +....+.++..|++++..+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 5778899999999999888999999999877 4455667788899988555
No 103
>PRK08862 short chain dehydrogenase; Provisional
Probab=90.70 E-value=3.9 Score=32.73 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=35.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+..++.-|.++|......|.+++++-..... ....+.++..|.+++.+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~ 60 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQ 60 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 467888888889999999988899987776443221 122344555676665443
No 104
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=90.60 E-value=5.4 Score=31.85 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=37.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+..+|.-|.++|......|.+++++.... .....+.++..+.++..+..
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~ 59 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTA 59 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEEC
Confidence 4778888889999999999888999877765432 23334455566666655543
No 105
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.57 E-value=2.3 Score=36.28 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=41.7
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
.+++.+.+|. ..|..|...+..++.+|.+++++.+...++.+++.++.+|++.+
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 3455555555 56999999999999999987766655557888899999999864
No 106
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=90.56 E-value=3.7 Score=36.07 Aligned_cols=127 Identities=20% Similarity=0.252 Sum_probs=72.9
Q ss_pred EEeeCCC-chHHHHHHHHHHcCCcEEEEEcC-CCC----HHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHHHHHhCCCe
Q 028372 72 LIEVTSG-NTGVGLAFIAAARGYNLIIVMPS-TCS----MERRIVLRALGA-EIILADSALRFEEILEKGEEILKKTPDG 144 (210)
Q Consensus 72 vv~~ssG-N~g~alA~~a~~~g~~~~vvvp~-~~~----~~~~~~~~~~Ga-~v~~v~~~~~~~~~~~~a~~~~~~~~~~ 144 (210)
|+.+|+| .+-..+.+.....+++++.|.-+ .-+ ..-.+....+|| +++.++....+. .+.....-+. +.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~a--nA 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKA--NA 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHT--T-
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHH--HH
Confidence 3456776 56667778888888999988754 222 334455678899 999998642221 1222222121 23
Q ss_pred EEcCCCC---CChhHHHHHHhHHHHHHHhhCCCCCEEEE-ccCchhHHHHHHHHHHhcCCCCEEEE
Q 028372 145 YLLRQFE---NPANPKIHYETTGPEIWQDSGGKVDAFIS-GIGTGGTVTGAGRFLKENNPDIKVVL 206 (210)
Q Consensus 145 ~~~~~~~---n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~-pvG~Gg~~~Gi~~~~k~~~~~~~vig 206 (210)
.|-..|- ....|. .+....|++++. ..++|.. +.|-|-...=.-.+++.+.|+.+|++
T Consensus 77 ~Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 77 LYEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp -BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred HhCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 3333331 222222 234556777776 4688888 56889999999999999999999984
No 107
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.43 E-value=10 Score=34.89 Aligned_cols=52 Identities=27% Similarity=0.286 Sum_probs=39.5
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~ 124 (210)
.+++....|+.|+.+|-.-+..|++++++=. ++.+.+.++..|.+++.-|..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~ 469 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA 469 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC
Confidence 5688899999999999999999999866533 345666667777777766643
No 108
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.40 E-value=10 Score=35.34 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=37.5
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
.+++.+..|..|+.+|..-...|++++++=. ++.+.+.++.+|.+++.=|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~---d~~~v~~~~~~g~~v~~GDa 451 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLER---DISAVNLMRKYGYKVYYGDA 451 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEEC---CHHHHHHHHhCCCeEEEeeC
Confidence 4588899999999999998889998876532 34556666767766655543
No 109
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=90.34 E-value=5.6 Score=32.09 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=37.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+..+|.-|.++|..-...|.+++++..........+.+...+.++..+..
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQV 70 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEc
Confidence 4778889999999999999888999988876652222233344555666654443
No 110
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.19 E-value=5.1 Score=34.12 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=39.3
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
.+..++++.+.+|... |..|.+++..|+.+|.+++++ ..++.+++.++.+|++.+.
T Consensus 160 ~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTL 215 (349)
T ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEe
Confidence 3445667756555554 999999999999999975443 2245677777888886544
No 111
>PRK06139 short chain dehydrogenase; Provisional
Probab=90.17 E-value=3.4 Score=35.25 Aligned_cols=54 Identities=26% Similarity=0.273 Sum_probs=37.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+..+|--|.++|......|.+++++...... ....+.++..|+++..+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVP 62 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 467888888999999999988899997776543221 222345566787776544
No 112
>PRK08589 short chain dehydrogenase; Validated
Probab=89.94 E-value=4.5 Score=33.10 Aligned_cols=54 Identities=19% Similarity=0.131 Sum_probs=35.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+..+|--|.++|..-...|.+++++-.........+.++..+.++..+.
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYH 60 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEE
Confidence 477888888889999998888889988877554111222344455565555443
No 113
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=89.92 E-value=6.7 Score=30.97 Aligned_cols=33 Identities=33% Similarity=0.359 Sum_probs=27.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
++.+|+.++|..|.+++......|.+++++...
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888899999999999888889987666654
No 114
>PRK07478 short chain dehydrogenase; Provisional
Probab=89.65 E-value=5.5 Score=32.00 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=34.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+..+|.-|.++|..-...|.+++++...... ......++..|.++..+.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALA 61 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 467888888999999999888889987766543211 111233444555554443
No 115
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=89.62 E-value=5 Score=29.80 Aligned_cols=54 Identities=31% Similarity=0.344 Sum_probs=37.3
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC----HHHHHHHHHcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS----MERRIVLRALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~----~~~~~~~~~~Ga~v~~v~~ 123 (210)
..+|+..++.-|.++|..-...|-..++++..+.+ ....+.++..|.++..+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~ 59 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIEC 59 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccc
Confidence 56888899999999999977777766666665521 2233445666777776664
No 116
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=89.39 E-value=5.9 Score=31.85 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=34.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
++.+|+..+|..|.++|......|.+++++...... ....+.++..|.++..+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALA 65 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEE
Confidence 477888899999999999988889987665432211 112233444455555443
No 117
>PRK08643 acetoin reductase; Validated
Probab=89.36 E-value=6.9 Score=31.40 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=26.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+.++|.-|.++|......|.+++++..
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r 34 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDY 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 46788888999999999998888988766644
No 118
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.12 E-value=7.5 Score=33.99 Aligned_cols=56 Identities=27% Similarity=0.324 Sum_probs=41.7
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
...++++.+.+| ...|..|.+++..|+.+|.+.+++... .+.+++..+.+|++.+.
T Consensus 180 ~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d~--~~~r~~~a~~~Ga~~v~ 235 (393)
T TIGR02819 180 TAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGDL--NPARLAQARSFGCETVD 235 (393)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHHHHHcCCeEEe
Confidence 355667766555 677999999999999999987664432 46788888889997533
No 119
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.07 E-value=8.9 Score=30.54 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=35.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~--~~~~~~~~~Ga~v~~v~ 122 (210)
++.+|+..+|.-|.++|..-...|.+++++...+... ...+.++..|.++..+.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVK 60 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4678888999999999999888898877654332211 22234455566655544
No 120
>PRK05866 short chain dehydrogenase; Provisional
Probab=89.06 E-value=5.6 Score=33.14 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=26.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
++.+|+..+|.-|.++|......|.+++++...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 367888888999999999888889888776554
No 121
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=88.70 E-value=6.7 Score=31.79 Aligned_cols=54 Identities=22% Similarity=0.086 Sum_probs=34.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+..+|..|.++|......|.+++++-..... ....+.++..|.++..+.
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYV 65 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 477889999999999999888889887666322111 112233444455555443
No 122
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.69 E-value=11 Score=34.29 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=40.1
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
.+|+....|..|.+.+..|+.+|-+++++ +..+.++++.+.+|++.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 56888999999999999999999853332 346788889999999976554
No 123
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=88.31 E-value=8.6 Score=30.52 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=35.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
++.+|+.++|..|.+++..-...|.+++++...... ....+.++..+.++..+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 61 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQ 61 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 467888899999999999888889887776554221 222334455555555444
No 124
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=88.29 E-value=4.6 Score=34.19 Aligned_cols=88 Identities=24% Similarity=0.292 Sum_probs=59.8
Q ss_pred eEEEEeCCCCC-----CCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HH
Q 028372 33 RIAAKLETMEP-----CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-ME 106 (210)
Q Consensus 33 ~i~~K~E~~~p-----tGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~ 106 (210)
+-++|.++.-| |-|.---.|+-|+.+-.+- .+|...+--++.+--|+++--.|+.+|++.+-++++... ..
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L---~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~iee 200 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQL---NKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEE 200 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhc---CCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHH
Confidence 46677776444 3345555677888887653 345332333333455667777899999999999988654 45
Q ss_pred HHHHHHHcCCEEEEECC
Q 028372 107 RRIVLRALGAEIILADS 123 (210)
Q Consensus 107 ~~~~~~~~Ga~v~~v~~ 123 (210)
..++++.+||+-+..+.
T Consensus 201 l~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 201 LKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHcCCceEecHH
Confidence 56788999999888764
No 125
>PRK08278 short chain dehydrogenase; Provisional
Probab=88.18 E-value=11 Score=30.77 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=28.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~ 102 (210)
+..+|+..+|--|.++|......|.+++++....
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTA 40 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence 4678888889999999999889999988876543
No 126
>PRK12937 short chain dehydrogenase; Provisional
Probab=88.17 E-value=11 Score=29.96 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=38.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~~ 123 (210)
+..+|+..+|..|.++|..-...|.+++++.....+ ....+.++..+.++..+..
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQA 62 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 467888899999999999988899988776544321 1223445556777666554
No 127
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.11 E-value=8.3 Score=30.57 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=26.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+..+|+.++|..|.+++......|.+++++..+
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888888999999998888889877776543
No 128
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.07 E-value=8.6 Score=32.20 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=43.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v 121 (210)
+.+.+++|...+|.+.+|..|.+++..|+.+|.+++++.+ +..+.+.++.+|++.+..
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4556777767667777899999999999999998665543 456777888899865443
No 129
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=88.02 E-value=8.5 Score=30.64 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=36.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~~ 123 (210)
+..+|+..+|--|.++|......|.++++....... +...+.++..|.++..+..
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQA 63 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEEC
Confidence 477888889999999999888889887765433211 1222344555666665554
No 130
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=88.00 E-value=8.6 Score=31.35 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=26.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+..+|..|.++|......|.+++++..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r 42 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDR 42 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 46788888899999999998888998776654
No 131
>PRK08703 short chain dehydrogenase; Provisional
Probab=87.89 E-value=8.1 Score=30.70 Aligned_cols=32 Identities=34% Similarity=0.322 Sum_probs=26.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
++.+|+.++|..|.++|......|.+++++.+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 46788999999999999988888888666544
No 132
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=87.68 E-value=6.8 Score=31.52 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=45.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKK 140 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 140 (210)
+..+|+..+|.-|.++|......|.+++++-.........+.++..|.++..+..+ .+.++..+..++..++
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 47789999999999999998889998877654332223334455567776654432 1234444444554443
No 133
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.49 E-value=5.3 Score=34.26 Aligned_cols=61 Identities=23% Similarity=0.359 Sum_probs=45.6
Q ss_pred HHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 59 a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
+.+.| +.||+..-|..-+| .|.---.+|+..|++++++-. .+..|.+.++.+||+......
T Consensus 174 Lk~~g-~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~--~~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 174 LKRSG-LGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVIST--SSKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hHHcC-CCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeC--CchhHHHHHHhcCcceeEEec
Confidence 34555 45887766666666 776666779999999999843 345678889999999988765
No 134
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.48 E-value=10 Score=31.99 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=42.6
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHH-cCCEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIIL 120 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~-~Ga~v~~ 120 (210)
+.+.+++|+..+|.+.+|..|.+++-.|+.+|.++++..+ +..+.+.++. +|++-+.
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeE
Confidence 3456777878788777899999999999999998655443 4567777776 8885443
No 135
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=87.44 E-value=12 Score=29.37 Aligned_cols=54 Identities=30% Similarity=0.289 Sum_probs=34.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHH-HHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSME-RRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~-~~~~~~~~Ga~v~~v~ 122 (210)
++.+|+..+|..|..++..-...|.+++++........ ....++..|.++..+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEE
Confidence 46788889999999999998888998766654422211 1233344555555443
No 136
>PRK06194 hypothetical protein; Provisional
Probab=87.43 E-value=10 Score=30.99 Aligned_cols=55 Identities=27% Similarity=0.312 Sum_probs=35.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+..+|.-|.++|......|.+++++-..... ......+...|.++..+..
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRT 62 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEEC
Confidence 467888889999999999888889887665432211 1222333444666655543
No 137
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=87.24 E-value=7.7 Score=32.65 Aligned_cols=57 Identities=30% Similarity=0.468 Sum_probs=42.4
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
.+...+.++...+|...+|..|.+++..|+.+|.+++++.+. . +++.++.+|++.+.
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVI 226 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEE
Confidence 345567777777777777999999999999999997665532 2 66677788986443
No 138
>PRK06701 short chain dehydrogenase; Provisional
Probab=87.14 E-value=15 Score=30.50 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=35.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+..+|.-|.++|......|.+++++...... ....+.++..|.++..+.
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 102 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIP 102 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEE
Confidence 477888889999999999988889988776554322 122233444455554443
No 139
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=87.13 E-value=9.7 Score=30.28 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=34.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+..+|.-|.++|......|.+++++...... ....+.++..|.++....
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASE 59 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEE
Confidence 466889999999999999988889887665433221 122333444566655433
No 140
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.88 E-value=10 Score=30.10 Aligned_cols=54 Identities=22% Similarity=0.152 Sum_probs=34.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
++.+|+..+|.-|.++|......|.+++++.+.... ....+.++..|+++..+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 467888888999999999888889887665433211 122333444566655443
No 141
>PRK06181 short chain dehydrogenase; Provisional
Probab=86.62 E-value=10 Score=30.58 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=33.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
+.+|+..+|.-|.+++......|.+++++...... ....+.++..|.++..+.
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 56 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVP 56 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 56888888999999999888889887776543211 112233344455554443
No 142
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=86.55 E-value=19 Score=30.70 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=29.2
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCC-CCEEEEE
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNP-DIKVVLR 207 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~-~~~vigv 207 (210)
...++++.- +++|.|+++ +...+.|...++++.+. ++.|+|+
T Consensus 199 ~~~~lL~~~-pdi~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~ 241 (336)
T PRK15408 199 TAEGILKAY-PDLDAIIAP--DANALPAAAQAAENLKRDKVAIVGF 241 (336)
T ss_pred HHHHHHHHC-CCCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEe
Confidence 445666654 679999988 33445588899988653 6777775
No 143
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.51 E-value=15 Score=29.21 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=27.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
++.+|+.++|..|.+++......|.+++++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 477899999999999999988889987766554
No 144
>PRK06138 short chain dehydrogenase; Provisional
Probab=86.44 E-value=13 Score=29.66 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=26.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
++.+|+..+|-.|.++|..-...|.+++++...
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~ 38 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRD 38 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCC
Confidence 467889999999999999877788887666543
No 145
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=86.40 E-value=12 Score=31.07 Aligned_cols=55 Identities=35% Similarity=0.417 Sum_probs=40.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHH--HHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMER--RIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~--~~~~~~~Ga~v~~v~~ 123 (210)
++.+||..|+.-|.++|..-+..|.+++++.+....... .+.-+..|.+|...+.
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~ 63 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPA 63 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEEC
Confidence 478999999999999999999999999999886543222 2222345666665554
No 146
>PRK08303 short chain dehydrogenase; Provisional
Probab=86.25 E-value=12 Score=31.36 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=26.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+..+|+..++--|.++|..-...|.+++++...
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 467888888888999998888889987776543
No 147
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.17 E-value=9.5 Score=30.79 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=24.9
Q ss_pred CeEEEeeCC--CchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ss--GN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+..+ +.-|.++|..-...|.++++.-.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 466777766 68999999998889998777644
No 148
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=86.17 E-value=2.8 Score=36.16 Aligned_cols=86 Identities=21% Similarity=0.221 Sum_probs=53.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHhCCC-eEEc
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKTPD-GYLL 147 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~~~-~~~~ 147 (210)
+.++..+||..|.-+|+.+..++-.-.|++|.-+.......+...|+++++++-+ .++.=..+..++...+... -+.+
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~ 120 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVV 120 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEe
Confidence 5688899999999988888444444788899999999999999999999999864 3322112223333333223 3455
Q ss_pred CCCCCChh
Q 028372 148 RQFENPAN 155 (210)
Q Consensus 148 ~~~~n~~~ 155 (210)
+.+.++..
T Consensus 121 h~~G~~~d 128 (363)
T PF01041_consen 121 HLFGNPAD 128 (363)
T ss_dssp -GGGB---
T ss_pred cCCCCccc
Confidence 66666654
No 149
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.09 E-value=15 Score=30.97 Aligned_cols=58 Identities=28% Similarity=0.387 Sum_probs=39.4
Q ss_pred cCCCCCC--CeEEEeeCCCchHHHHHHHHHHcCC-cEEEEEcCCCCHHHHHHHHH-cCCEEEEEC
Q 028372 62 KGLITPG--KTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRA-LGAEIILAD 122 (210)
Q Consensus 62 ~g~~~~~--~~~vv~~ssGN~g~alA~~a~~~g~-~~~vvvp~~~~~~~~~~~~~-~Ga~v~~v~ 122 (210)
.+.++++ .+.+|...+|..|.++...|+.+|. +++++.+ ++.+.+.++. +|++-+...
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY 208 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC
Confidence 4445554 5666777779999999999999998 5655543 3556666655 888654433
No 150
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.90 E-value=7.6 Score=31.95 Aligned_cols=53 Identities=28% Similarity=0.340 Sum_probs=38.8
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
..++.+.+| ...|..|..++..|+.+|.+.++++ +.++.+++..+.+|++.+.
T Consensus 118 ~~~g~~VlV-~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 118 DLKGRRVLV-VGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred CCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 346655444 4668999999999999999855555 3456788888999996544
No 151
>PRK05867 short chain dehydrogenase; Provisional
Probab=85.89 E-value=12 Score=29.93 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=34.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+..+|.-|.++|..-...|.+++++...... ....+.++..|.++..+.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 64 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVC 64 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 467888888999999999888889987666432211 122233444566655444
No 152
>PRK06841 short chain dehydrogenase; Provisional
Probab=85.87 E-value=15 Score=29.41 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=26.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
++.+|+..+|--|.++|......|.+++++.+.
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 477888888999999999988889987766543
No 153
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.84 E-value=22 Score=30.61 Aligned_cols=51 Identities=27% Similarity=0.361 Sum_probs=41.9
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHH-cCCEEEEECC
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIILADS 123 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~-~Ga~v~~v~~ 123 (210)
+++....|.-|...+..++.+|-..++++ +..+.+++..+. .|++++..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 68889999999999999999999988888 455778888877 6777766654
No 154
>PRK07791 short chain dehydrogenase; Provisional
Probab=85.80 E-value=14 Score=30.54 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=26.0
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEE
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVM 99 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvv 99 (210)
++..+|+..++.-|.++|......|.+++++.
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~ 37 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVND 37 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEee
Confidence 34778888888899999998888898877664
No 155
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=85.76 E-value=8.6 Score=29.91 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCcEEEEEcC-CCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEc--CCCCCChhHH
Q 028372 81 GVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLL--RQFENPANPK 157 (210)
Q Consensus 81 g~alA~~a~~~g~~~~vvvp~-~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~n~~~~~ 157 (210)
|..+.++++.+|.+..--++. +.-..-.+.....|..|.+++.. -+.....++.+.++.|+.-.. ++|.++..
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~-- 88 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGAFGPLEPEE-- 88 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEECCCCChHH--
Confidence 367888999998763211111 11223344455678899999865 244455667777777653322 33333221
Q ss_pred HHHHhHHHHHHHhhC-CCCCEEEEccCchh
Q 028372 158 IHYETTGPEIWQDSG-GKVDAFISGIGTGG 186 (210)
Q Consensus 158 ~g~~t~~~Ei~~q~~-~~~d~vv~pvG~Gg 186 (210)
. .+|++++. .++|.|+|+.|+=-
T Consensus 89 --~----~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 89 --R----KAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred --H----HHHHHHHHHcCCCEEEEEcCCcH
Confidence 1 23444442 35899999999743
No 156
>PRK07062 short chain dehydrogenase; Provisional
Probab=85.70 E-value=14 Score=29.73 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=27.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+..+|+..+|.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 477888899999999999988889987766553
No 157
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=85.66 E-value=15 Score=31.29 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=42.0
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHH-HcCCEEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGAEIILA 121 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~-~~Ga~v~~v 121 (210)
+.+.+++|...+|.+.+|..|.++...|+.+|.+++++. .+..+.+.++ .+|++-+.-
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEE
Confidence 345567777777777779999999999999999855443 2456777776 689865443
No 158
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=85.45 E-value=17 Score=30.80 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=42.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v 121 (210)
+...+.++...++ ...|..|.+++..|+.+|.+.++.+.. .+.+.+.++.+|++.+..
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~~ 225 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVLN 225 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEec
Confidence 4556677766555 667999999999999999887666554 356677778889865543
No 159
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=85.41 E-value=18 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=24.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+.+|+.++|.-|.++|......|.++++...
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 4588889999999999988888988666543
No 160
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.21 E-value=13 Score=31.67 Aligned_cols=57 Identities=21% Similarity=0.190 Sum_probs=40.0
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
.+.+.++++++.+|. .+|-.|.+++..|+.+|.+.++.+.. ++.+++.++.+|++-+
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~~--~~~~~~~~~~~Ga~~~ 225 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVDI--DDRKLEWAREFGATHT 225 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceE
Confidence 344556777676666 56889999999999999974444432 4567777788888543
No 161
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.18 E-value=18 Score=29.03 Aligned_cols=53 Identities=23% Similarity=0.203 Sum_probs=35.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
+..+|+..+|--|.++|..-...|.+++++.... ....+.++..+...+.++-
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl 60 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDV 60 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecC
Confidence 4678888899999999998888898877654432 2333444444555555554
No 162
>PRK07774 short chain dehydrogenase; Provisional
Probab=85.02 E-value=17 Score=28.94 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=26.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
++.+|+.++|--|.+++......|.+++++..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r 38 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADI 38 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 46788999999999999998888988777644
No 163
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=84.96 E-value=12 Score=29.86 Aligned_cols=53 Identities=28% Similarity=0.325 Sum_probs=34.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEEC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~ 122 (210)
+.+|+.++|.-|.++|..-...|.++++....+.. ......++..+.+++.+.
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVA 58 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 56888888999999999888889887665433221 122334455566655544
No 164
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=84.94 E-value=15 Score=29.40 Aligned_cols=31 Identities=32% Similarity=0.232 Sum_probs=25.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEE
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVM 99 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvv 99 (210)
+..+|+..+|.-|.++|..-...|.+++++.
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~ 40 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIIND 40 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEc
Confidence 4778999999999999999888898776654
No 165
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.85 E-value=14 Score=31.72 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=40.0
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+...++++...+|. .+|..|.+++..|+.+|.+.++++. ..+.+++.++.+|++.+.
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATV 241 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEe
Confidence 44556777666665 4688999999999999995444432 356677788888986443
No 166
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=84.65 E-value=2.1 Score=32.40 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=31.6
Q ss_pred EEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHH
Q 028372 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA 113 (210)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~ 113 (210)
|....+||+|.|+|...+..|.+++++.++. ...+.++.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~ 40 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINE 40 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHH
Confidence 5667999999999999999999999998854 44444543
No 167
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.65 E-value=13 Score=29.28 Aligned_cols=68 Identities=21% Similarity=0.173 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHc--CCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHH-HHcCCEEE
Q 028372 49 DRIAYSMIKDAEDK--GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEII 119 (210)
Q Consensus 49 ~R~a~~~~~~a~~~--g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~-~~~Ga~v~ 119 (210)
-+|+.+.+..+.+. +......++++.-..||.|..+|......|.++++ .+.+ ..+.+.+ ..+|++.+
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv-~D~~--~~~~~~~~~~~g~~~v 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIV-ADIN--EEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-EcCC--HHHHHHHHHHcCCEEE
Confidence 36777777777655 22222235677778899999999999999998874 3322 3444443 34476543
No 168
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=84.64 E-value=6 Score=33.52 Aligned_cols=61 Identities=20% Similarity=0.185 Sum_probs=43.1
Q ss_pred HcCCCCCCCeEEEeeCC--CchHHHHHHHHHHcCCcEEEEEcCCC--CHHHHHHHHHcCCEEEEEC
Q 028372 61 DKGLITPGKTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ss--GN~g~alA~~a~~~g~~~~vvvp~~~--~~~~~~~~~~~Ga~v~~v~ 122 (210)
..|.++ |.+..+.+-. +|.+.++..+++++|++++++.|+.. ++..++.++..|+++...+
T Consensus 144 ~~g~l~-g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 144 EFGRLD-GLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred HhCCCC-CCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 345543 3233333333 69999999999999999999999864 4555666677788887665
No 169
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=84.52 E-value=6.8 Score=25.69 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=37.4
Q ss_pred EEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-----H----HHHHHHHHcCCEEEE
Q 028372 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-----M----ERRIVLRALGAEIIL 120 (210)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-----~----~~~~~~~~~Ga~v~~ 120 (210)
++.-.+|..|.-+|.+.+.+|.+++++.+.... + .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 567789999999999999999999999876432 1 224456677777764
No 170
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.51 E-value=20 Score=31.71 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=35.4
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
+++.+|+..+|.-|.++|......|.+++++-.+.......+.....+.+.+.++-
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv 265 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDI 265 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeC
Confidence 34678888888899999988888888877664432222222333445555555553
No 171
>PRK05650 short chain dehydrogenase; Provisional
Probab=84.49 E-value=16 Score=29.69 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=24.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+.+|+..+|.-|.+++..-...|.+++++..
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r 32 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADV 32 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 4578888899999999888778888766654
No 172
>PRK08265 short chain dehydrogenase; Provisional
Probab=84.46 E-value=20 Score=28.98 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=33.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+..+|--|.++|......|.+++++-... ....+..+..+.++..+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~ 58 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIA 58 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEE
Confidence 4778888889999999999888899877664322 111222334465555444
No 173
>PRK06483 dihydromonapterin reductase; Provisional
Probab=84.19 E-value=19 Score=28.47 Aligned_cols=53 Identities=28% Similarity=0.292 Sum_probs=37.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
+..+|+..+|--|.++|..-...|.+++++-.... ...+.++..|+..+.++-
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~D~ 55 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY--PAIDGLRQAGAQCIQADF 55 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch--hHHHHHHHcCCEEEEcCC
Confidence 36788889999999999988888998887654332 223445556776666664
No 174
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=84.08 E-value=20 Score=28.80 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=37.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+.++|.-|.++|......|.+++++.....+ ....+.++..|.++..+.
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 477888999999999999988999988776554322 222344555677765543
No 175
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=84.00 E-value=19 Score=28.74 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=35.8
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~~ 123 (210)
+.+|+..+|.-|.++|......|.+++++...... ....+.++..|.++..+..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKL 56 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45788888999999999988899987766543211 1223445556766655543
No 176
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=83.68 E-value=21 Score=28.73 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=26.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEE
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVM 99 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvv 99 (210)
+..+|+..+|.-|.++|......|.+++++-
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 36 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLD 36 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 4778888899999999999888999877663
No 177
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=83.61 E-value=13 Score=31.64 Aligned_cols=58 Identities=22% Similarity=0.321 Sum_probs=46.9
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHH-cCCEEEE
Q 028372 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIIL 120 (210)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~-~Ga~v~~ 120 (210)
++-|..++|++.+|++.+|--|.-..-.|+..|.+++-+.. .++|.+.+.. +|-+...
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceee
Confidence 45677788889999999999999988999999999888765 5778888777 6665544
No 178
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=83.56 E-value=16 Score=30.16 Aligned_cols=54 Identities=33% Similarity=0.410 Sum_probs=37.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
+...++++...+|...+|..|.+++..|+.+|.+++++.+.. .+.+.++.+|++
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~---~~~~~~~~~g~~ 186 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRD---AGVAELRALGIG 186 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCH---HHHHHHHhcCCC
Confidence 345567776766666779999999999999999887775532 334444445653
No 179
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.49 E-value=19 Score=30.41 Aligned_cols=74 Identities=24% Similarity=0.259 Sum_probs=53.9
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEE-cCCCCHHHHHHHHHcC-CEEEEECCCCCHHHHHHHHHHHHHhCC
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVM-PSTCSMERRIVLRALG-AEIILADSALRFEEILEKGEEILKKTP 142 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvv-p~~~~~~~~~~~~~~G-a~v~~v~~~~~~~~~~~~a~~~~~~~~ 142 (210)
|+..+||.+++-.|+++|.--+++|-+.++.- .+....+..+.++..| ++-..++-+ +.++....++++.++.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence 45788999999999999999999998544432 2244566677777767 444566654 47888888999988863
No 180
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=83.05 E-value=15 Score=26.60 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=51.6
Q ss_pred HHHHHHHcCCcEEEEEcCCCCHHHHHH-HHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHh
Q 028372 84 LAFIAAARGYNLIIVMPSTCSMERRIV-LRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (210)
Q Consensus 84 lA~~a~~~g~~~~vvvp~~~~~~~~~~-~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 162 (210)
|+...+..+.++.++..+.......+. ....+..++.=.+ .++.+++..|-+.+.+.-....+-..+-|.....
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~---- 76 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTPD---- 76 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HH----
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHH----
Confidence 345567778888888876554444433 4455666665544 5688988888666644335667777788876432
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhH
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGT 187 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~ 187 (210)
.-.+.++.+ ...|.|+.|+--||-
T Consensus 77 ~l~~A~~~L-~~~d~VlgPa~DGGy 100 (122)
T PF09837_consen 77 DLEQAFEAL-QRHDVVLGPAEDGGY 100 (122)
T ss_dssp HHHHHHHHT-TT-SEEEEEBTTSSE
T ss_pred HHHHHHHHh-ccCCEEEeeccCCCE
Confidence 223444555 345999999987763
No 181
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=82.87 E-value=7.8 Score=32.80 Aligned_cols=56 Identities=21% Similarity=0.159 Sum_probs=40.1
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
++..+++|.+.+|.. .|..|.+++..|+.+|.+++++.+ .+.|++.++.+|++.+.
T Consensus 159 ~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 159 LRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 345677776656555 588898888899999987554433 35678889999996543
No 182
>PRK05872 short chain dehydrogenase; Provisional
Probab=82.61 E-value=19 Score=29.85 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=25.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+..+|.-|.++|......|.+++++-.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r 41 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDL 41 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 47788889999999999998888987666543
No 183
>PRK05693 short chain dehydrogenase; Provisional
Probab=82.54 E-value=25 Score=28.59 Aligned_cols=50 Identities=28% Similarity=0.240 Sum_probs=33.8
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
..+|+..+|-.|.++|......|.+++++... ..+.+.+...+.+.+.++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~D 52 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLD 52 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEee
Confidence 56888888999999999888889887776543 233334444455544444
No 184
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=82.50 E-value=15 Score=28.09 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=53.7
Q ss_pred CCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC---------CCCHHHHHHHHH
Q 028372 43 PCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS---------TCSMERRIVLRA 113 (210)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~---------~~~~~~~~~~~~ 113 (210)
|.--+-++.....+.+|.+-|. +..||.+|+|.++.-++-+...- +++++|.-. ..+++-.+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 3335678888888999988875 35566667788877666554433 888887642 346778889999
Q ss_pred cCCEEEEEC
Q 028372 114 LGAEIILAD 122 (210)
Q Consensus 114 ~Ga~v~~v~ 122 (210)
.|++|..-.
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 999997654
No 185
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=82.48 E-value=30 Score=29.57 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=40.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+.+.++++.+.+|. .+|..|.+++..++.+|.+.++++.. .+.+++.++.+|++-+.
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDFI 234 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcEe
Confidence 44567777666666 57999999999999999953443332 56778888889985443
No 186
>PRK06720 hypothetical protein; Provisional
Probab=82.40 E-value=20 Score=27.44 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=32.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCH-HHHHHHHHcCCEEEEE
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILA 121 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~-~~~~~~~~~Ga~v~~v 121 (210)
+..+|+..++--|.++|......|.++.++-...... ...+.++..|.++..+
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~ 70 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFV 70 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 4667888888889999988888888766654332111 1123344456555433
No 187
>PRK06197 short chain dehydrogenase; Provisional
Probab=82.36 E-value=19 Score=29.93 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=26.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+..+|+.++|--|.++|..-...|.+++++.+.
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 467888888888888888877789887776553
No 188
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=82.35 E-value=26 Score=29.65 Aligned_cols=58 Identities=33% Similarity=0.398 Sum_probs=39.7
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v 121 (210)
+...++++...+|.+ +|..|.+++..|+.+|.+.++++. .++.+.+.++.+|++.+..
T Consensus 166 ~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 166 RRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVLD 223 (351)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEC
Confidence 444566776656654 688999999999999995444443 3555666777788865543
No 189
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=82.31 E-value=16 Score=30.94 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=38.1
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
..++++.+|. .+|..|.+....++.+|.+.++++. .++.+++.++.+|++.+.
T Consensus 167 ~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 167 DLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLV 219 (343)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 3456565555 5699999999999999986554443 246788888899997654
No 190
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=82.28 E-value=24 Score=28.31 Aligned_cols=122 Identities=12% Similarity=0.037 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHH
Q 028372 52 AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEIL 131 (210)
Q Consensus 52 a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~ 131 (210)
+..+.....+-|. ...=|+.++--...++...++.+. ++.+=.-.=.++...+.....||+.++.++-. .+
T Consensus 27 a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~--~e-- 97 (211)
T COG0800 27 ALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLN--PE-- 97 (211)
T ss_pred HHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCC--HH--
Confidence 4444555556664 233466777778888899999988 55444344457888999999999999999742 33
Q ss_pred HHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHHhh--------------C-CCCCEEEEccCchh
Q 028372 132 EKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDS--------------G-GKVDAFISGIGTGG 186 (210)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~--------------~-~~~d~vv~pvG~Gg 186 (210)
.-+.+.++ +..+++...+|.- ..-.-..|.+++.-+ . +-++.-|+|+|+=+
T Consensus 98 --v~~~a~~~-~ip~~PG~~TptE-i~~Ale~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs 163 (211)
T COG0800 98 --VAKAANRY-GIPYIPGVATPTE-IMAALELGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVS 163 (211)
T ss_pred --HHHHHHhC-CCcccCCCCCHHH-HHHHHHcChhheeecCccccCcHHHHHHHcCCCCCCeEeecCCCC
Confidence 33344444 6677777666653 222223334443322 1 23677888887644
No 191
>PRK05826 pyruvate kinase; Provisional
Probab=82.25 E-value=30 Score=31.25 Aligned_cols=120 Identities=12% Similarity=0.114 Sum_probs=69.9
Q ss_pred HHHHHHHcCCcEEEE-----------EcCCCCHHHHHHHHHcCCEEEEECCCC---CH-HHHHHHHHHHHHhCCCeEEc-
Q 028372 84 LAFIAAARGYNLIIV-----------MPSTCSMERRIVLRALGAEIILADSAL---RF-EEILEKGEEILKKTPDGYLL- 147 (210)
Q Consensus 84 lA~~a~~~g~~~~vv-----------vp~~~~~~~~~~~~~~Ga~v~~v~~~~---~~-~~~~~~a~~~~~~~~~~~~~- 147 (210)
+...|+..|.++.+- .|..+....+...-..|++-+...++. .| .++.+...+.+++.+..++.
T Consensus 264 Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (465)
T PRK05826 264 IIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSIN 343 (465)
T ss_pred HHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchh
Confidence 445688899998874 334444455555566799877766531 12 34555555544433221111
Q ss_pred ---CCCCCC-hhHHHHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 148 ---RQFENP-ANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 148 ---~~~~n~-~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
...... ..........+.++.++++ +.+.||+..-+|.++-.+ ....|.+.|++++
T Consensus 344 ~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~i----sk~RP~~pI~~~t 403 (465)
T PRK05826 344 LSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARLI----SRFRPGAPIFAVT 403 (465)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHH----HhhCCCCCEEEEc
Confidence 100011 1112344555667777773 267899999999985544 4568999999886
No 192
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=82.17 E-value=23 Score=28.32 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=25.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+.+|+..+|..|.++|......|.+++++..
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r 32 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGR 32 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 4578888999999999998888998776644
No 193
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=81.88 E-value=17 Score=30.19 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=34.7
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
+++.+|...+|..|.+++..|+.+|.++++..+. ..+.+.++.+|++-+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v 195 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGK---ADAADYLKKLGAKEV 195 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHHcCCCEE
Confidence 4455666667999999999999999986655432 345666677777433
No 194
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=81.58 E-value=23 Score=29.69 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=38.2
Q ss_pred CCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 64 ~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
.++++...+|...++..|.+++..|+.+|.+++++.+. +.+.+.++.+|++-+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v 214 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAF 214 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEE
Confidence 45666676777777789999999999999987666443 345556666776543
No 195
>PRK07326 short chain dehydrogenase; Provisional
Probab=81.40 E-value=24 Score=27.72 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=26.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+..+|..|.+++......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 46788889999999999998888998777654
No 196
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.31 E-value=27 Score=28.25 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=24.1
Q ss_pred CeEEEeeCC--CchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ss--GN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+.++ +.-|.++|..-...|.++++.-.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r 41 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYA 41 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecC
Confidence 366777755 78899999988888998776543
No 197
>PRK07109 short chain dehydrogenase; Provisional
Probab=81.27 E-value=11 Score=32.19 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=46.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC-CHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~-~~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~a~~~~~~ 140 (210)
+..+|+..+|.-|.++|......|.+++++..... .....+.++..|++++.+..+- +.++..+.+.+..++
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 46788888899999999998889998877765422 1223445667788877655431 233333344444433
No 198
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=81.20 E-value=32 Score=29.55 Aligned_cols=85 Identities=19% Similarity=0.286 Sum_probs=53.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHc-CCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCH-HHHHHHHHHHHHhCCCeEEc
Q 028372 70 TTLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF-EEILEKGEEILKKTPDGYLL 147 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~-g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~-~~~~~~a~~~~~~~~~~~~~ 147 (210)
.+++.+++|..|.-.|+.=-.. |=++.++.-..-.+.-.+..+.+|++|..++.+.+- -........+++..++.+|+
T Consensus 69 ~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv 148 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFV 148 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEE
Confidence 5677778887776654443333 444444444444666777888999999988754221 12234566777777888888
Q ss_pred CCCCCCh
Q 028372 148 RQFENPA 154 (210)
Q Consensus 148 ~~~~n~~ 154 (210)
-+.+...
T Consensus 149 ~hgdsST 155 (385)
T KOG2862|consen 149 THGDSST 155 (385)
T ss_pred EecCccc
Confidence 7766544
No 199
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.12 E-value=16 Score=29.19 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=40.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC-CHHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~-~~~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+..+|..|.+++......|.+++++..... .....+.++..|.++..+..
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAM 63 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEEC
Confidence 47789999999999999999999998877655432 12334455667888766554
No 200
>PRK05717 oxidoreductase; Validated
Probab=81.07 E-value=27 Score=28.00 Aligned_cols=31 Identities=23% Similarity=0.541 Sum_probs=25.8
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEE
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIV 98 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vv 98 (210)
+++.+|+..+|.-|.++|..-...|.+++++
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~ 40 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLA 40 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEE
Confidence 3477889999999999999988888877665
No 201
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=81.05 E-value=23 Score=29.71 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=38.2
Q ss_pred CCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 64 ~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
.++++...+|.. +|..|.+++..|+.+|.+++++.+ ...+++.++.+|++-+.
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 456665656655 899999999999999998655543 34566677888885443
No 202
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.86 E-value=25 Score=27.57 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=27.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~ 102 (210)
++.+|+..+|..|.+++......|.+++++....
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3678888999999999999888899876665554
No 203
>PRK10537 voltage-gated potassium channel; Provisional
Probab=80.78 E-value=39 Score=29.77 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=26.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
.+++....|+.|..++-.-+..|.+++++.++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d 272 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPL 272 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence 56888999999999888877789999888764
No 204
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=80.76 E-value=31 Score=28.54 Aligned_cols=56 Identities=27% Similarity=0.348 Sum_probs=41.3
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 028372 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (210)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v 121 (210)
+.++++...+|...+|..|.+++..|+.+|.+.+++.+ ++.+.+.++.+|++.+..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILIR 191 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEe
Confidence 55667767777777899999999999999998765433 355666667788854443
No 205
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=80.74 E-value=31 Score=28.62 Aligned_cols=55 Identities=24% Similarity=0.200 Sum_probs=39.6
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v 118 (210)
+.+.+.++...+|....|..|.+++..|+.+|.+++.+.+ ...+...++.+|++-
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~ 188 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQ 188 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCE
Confidence 3456677767666667899999999999999999766543 344555566677643
No 206
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=80.27 E-value=27 Score=28.08 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=26.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+..+|.-|.++|......|.+++++..
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r 38 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLER 38 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 47788888899999999998889998776643
No 207
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=79.99 E-value=14 Score=28.95 Aligned_cols=61 Identities=30% Similarity=0.399 Sum_probs=37.6
Q ss_pred EEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 028372 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (210)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~ 141 (210)
+--.|||-+|.++|..+...|.+++++..+...+. -.+.+++.+.. .++-.+..++...+.
T Consensus 23 ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 23 ITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPSA 83 (185)
T ss_dssp EEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGGG
T ss_pred ecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCcc
Confidence 44468999999999999999999999998743221 24667777663 455555555554443
No 208
>PRK07063 short chain dehydrogenase; Provisional
Probab=79.94 E-value=29 Score=27.80 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=25.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+.++|--|.++|..-...|.+++++..
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r 39 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADL 39 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 46788888888899998888888888766543
No 209
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.81 E-value=35 Score=28.64 Aligned_cols=56 Identities=29% Similarity=0.449 Sum_probs=39.3
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
...+.++...+| ..+|..|.+++..|+..|.+.++.++.. +.+.+.++.+|++-+.
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~~v~ 218 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGATDIV 218 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCceEe
Confidence 345566666666 4589999999999999999865555433 4566677778874433
No 210
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=79.57 E-value=11 Score=30.12 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=33.8
Q ss_pred CChhHHHHHHhHHHHH----HHhhC------CCCCEEEEcc--Cch---hHHHHHHHHHHhcCCCCEEEEEEeC
Q 028372 152 NPANPKIHYETTGPEI----WQDSG------GKVDAFISGI--GTG---GTVTGAGRFLKENNPDIKVVLRVLL 210 (210)
Q Consensus 152 n~~~~~~g~~t~~~Ei----~~q~~------~~~d~vv~pv--G~G---g~~~Gi~~~~k~~~~~~~vigv~~l 210 (210)
...+|..|+.+.+.++ .+++. +.+|.|++.. |+| |...=++..+++..|+..++.++++
T Consensus 91 ~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~il 164 (216)
T PF00091_consen 91 SGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSIL 164 (216)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE
T ss_pred ccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeecccc
Confidence 3344666777654433 33332 3467665554 333 2233455666778899999888764
No 211
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.38 E-value=21 Score=29.97 Aligned_cols=71 Identities=30% Similarity=0.355 Sum_probs=49.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHH-HHHHHcCC-E-EEEECCC-CCHHHHHHHHHHHHH
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERR-IVLRALGA-E-IILADSA-LRFEEILEKGEEILK 139 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~-~~~~~~Ga-~-v~~v~~~-~~~~~~~~~a~~~~~ 139 (210)
+..+||..|+--|.++|+.-...|.+.++++.......++ +.++..++ + ++....+ .+.+++.....+..+
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence 4778898888899999999999999999999887666666 66665554 4 5555432 124444444433333
No 212
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=79.31 E-value=31 Score=28.03 Aligned_cols=111 Identities=15% Similarity=0.069 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHc---CCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHH
Q 028372 81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRAL---GAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPK 157 (210)
Q Consensus 81 g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~---Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~ 157 (210)
|.+.|-+.+.+|+++..+-++.........+..+ |.+|....++..- ....+.+.+..-....+..|.+-....
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r---~~l~~~L~~~G~~v~~~~~Y~~~~~~~ 162 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGR---EVLEEKLEERGAEVREVEVYRTEPPPL 162 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCch---HHHHHHHHhCCCEEEEEeeeeecCCCc
Confidence 4677888899999988776656666777777666 5677766554222 122333433332445555554433211
Q ss_pred HHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCC
Q 028372 158 IHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNP 200 (210)
Q Consensus 158 ~g~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~ 200 (210)
. ..+. .+.+. ...+|+|++. |+.++-.+...+....+
T Consensus 163 ~-~~~~-~~~~~--~~~~d~v~ft--S~~~v~~~~~~~~~~~~ 199 (248)
T COG1587 163 D-EATL-IELLK--LGEVDAVVFT--SSSAVRALLALAPESGI 199 (248)
T ss_pred c-HHHH-HHHHH--hCCCCEEEEe--CHHHHHHHHHHccccch
Confidence 1 1111 11121 2568999988 55666677777666554
No 213
>PRK07832 short chain dehydrogenase; Provisional
Probab=79.30 E-value=32 Score=27.89 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=25.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+.+|+.++|..|.++|......|.+++++.+
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r 32 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDR 32 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4578888899999999988888988766543
No 214
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=79.10 E-value=52 Score=30.15 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=40.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
.+++....|..|.+.+..++.+|-.++++-. ...+++..+.+|++.+.++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~---~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDT---RPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCeEEeccc
Confidence 4567778999999999999999987555422 44578888889999877763
No 215
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.66 E-value=39 Score=28.51 Aligned_cols=57 Identities=26% Similarity=0.224 Sum_probs=40.7
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+...++++.+.+|. .+|..|.+++..|+.+|.+.++.+... +.+.+..+.+|++-+.
T Consensus 160 ~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~g~~~~v 216 (351)
T cd08285 160 ELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGSR--PNRVELAKEYGATDIV 216 (351)
T ss_pred HccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHcCCceEe
Confidence 44556677666665 578999999999999999755554433 4667777889985443
No 216
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=78.60 E-value=12 Score=31.68 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=41.1
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCH--HHHHHH----HHcCCEEEEECC
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVL----RALGAEIILADS 123 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~--~~~~~~----~~~Ga~v~~v~~ 123 (210)
|.+.+.+.-+.|.+.++-.+|..+|+.+++..|+...+ .-.+.. +..|+++..+..
T Consensus 153 g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 153 GLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred CcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 34556666778999999999999999999999996533 222222 344888888763
No 217
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=78.42 E-value=33 Score=27.46 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=26.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
++.+|+.++|.-|.++|..-...|.+++++-.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 36788999999999999988888988776644
No 218
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.41 E-value=33 Score=27.48 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=23.5
Q ss_pred eEEEeeCC--CchHHHHHHHHHHcCCcEEEEEcC
Q 028372 70 TTLIEVTS--GNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 70 ~~vv~~ss--GN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+.+|+..+ |.-|.++|..-...|.+++++.+.
T Consensus 7 ~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 56677666 478888888888889887776543
No 219
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=78.30 E-value=23 Score=27.18 Aligned_cols=105 Identities=21% Similarity=0.158 Sum_probs=64.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (210)
++|..-..|+-|+++|..++.+|++++.+-|...+.. .....+.+. . ++++. .++. +...+.-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~----~l~el-------l~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--V----SLDEL-------LAQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--S----SHHHH-------HHH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--e----ehhhh-------cchh-hhhhhhh
Confidence 5677789999999999999999999888877654333 223333322 1 23332 2222 3443332
Q ss_pred CCCChhHHHHHHhHHHHHHHhhCCCCCEEEEccCchhHH--HHHHHHHHh
Q 028372 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTV--TGAGRFLKE 197 (210)
Q Consensus 150 ~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~--~Gi~~~~k~ 197 (210)
-.++.+ ..-+..|.++++ +++++++-+|-|+.+ ..+..++++
T Consensus 100 plt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred cccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh
Confidence 223332 234667888888 468899999999875 455666654
No 220
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=78.29 E-value=12 Score=29.78 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=26.8
Q ss_pred CCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEECC
Q 028372 76 TSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (210)
Q Consensus 76 ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~~ 123 (210)
+++.-|.++|..-.+.|.++++.-..... ....+..+.+|.+++.++-
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~ 53 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDL 53 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCT
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecC
Confidence 45667777777777777776666544321 1222333455666555543
No 221
>PRK06114 short chain dehydrogenase; Provisional
Probab=78.22 E-value=29 Score=27.84 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=38.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~~ 123 (210)
+..+|+.++|--|.++|..-...|.++++....... ....+.++..|.++..+..
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAA 65 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEc
Confidence 477888888889999999988899988877654322 2334455666766665543
No 222
>PRK07074 short chain dehydrogenase; Provisional
Probab=78.12 E-value=32 Score=27.45 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=26.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
++.+|+..+|.-|.++|......|.+++++..
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r 34 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDI 34 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeC
Confidence 36788888899999999988888988777654
No 223
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=78.10 E-value=33 Score=27.40 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=26.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+.++|--|.++|..-...|.+++++..
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r 38 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADI 38 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcC
Confidence 46788999999999999998888998777644
No 224
>PRK07806 short chain dehydrogenase; Provisional
Probab=78.04 E-value=32 Score=27.22 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=36.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+..+|.-|.+++......|.+++++...... ......++..|.++..+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGA 63 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEc
Confidence 467888888999999999988889998877654321 1112334455666655543
No 225
>PRK05854 short chain dehydrogenase; Provisional
Probab=78.02 E-value=30 Score=29.02 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=25.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+..+|+..++--|.++|..-...|.+++++...
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 467888888888888888877788887776543
No 226
>PRK06179 short chain dehydrogenase; Provisional
Probab=77.79 E-value=24 Score=28.51 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=27.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+..+|+..+|.-|.++|......|.++++....
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888888999999999888889997776654
No 227
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=77.74 E-value=31 Score=28.97 Aligned_cols=56 Identities=29% Similarity=0.391 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCc-EEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~-~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+...++++.+.+|. .+|..|.+++..++.+|.+ +++ +. ..+.+++.++.+|++.+.
T Consensus 157 ~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~-~~--~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 157 RRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIG-VD--PSPERLELAKALGADFVI 213 (339)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEE-EC--CCHHHHHHHHHhCCCEEE
Confidence 33445667666665 5688999999999999999 444 32 245677777888885443
No 228
>PRK07856 short chain dehydrogenase; Provisional
Probab=77.72 E-value=31 Score=27.52 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=27.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
++.+|+..+|--|.++|..-...|.+++++...
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 477888999999999999888889988777543
No 229
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=77.29 E-value=35 Score=28.83 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=39.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
+...++++++.+|. ..|..|.+++..|+.+|.+.++.+.. ++.+++.++.+|++-+
T Consensus 154 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 154 HLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQT 209 (347)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceE
Confidence 34455667666666 57999999999999999986554432 4566667778888544
No 230
>PRK09242 tropinone reductase; Provisional
Probab=77.27 E-value=35 Score=27.25 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=26.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
++.+|+..+|.-|.+++......|.+++++..
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r 41 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVAR 41 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 46788888899999999988888888766654
No 231
>PLN02740 Alcohol dehydrogenase-like
Probab=77.22 E-value=35 Score=29.48 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=39.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+...+++|.+.+|. ..|.-|.+++..|+.+|.+.++.+. .++.+++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGVD--INPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEEc--CChHHHHHHHHcCCcEEE
Confidence 44557777665555 5799999999999999985333332 245677777888986433
No 232
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=77.19 E-value=20 Score=31.00 Aligned_cols=61 Identities=30% Similarity=0.350 Sum_probs=45.3
Q ss_pred HHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 59 a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
+..+..++||++ |....-|-.|.....+|+.+|.+++++.. +..|++..+.+||+.+....
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~~~---~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAITR---SEEKLELAKKLGADHVINSS 218 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEEeC---ChHHHHHHHHhCCcEEEEcC
Confidence 444556788855 55556666776667778989988888754 67888899999999988764
No 233
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.15 E-value=19 Score=28.28 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=29.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~ 102 (210)
++.+|+.++|..|.+++......|.+++++....
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4778899999999999999999999988876643
No 234
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=77.00 E-value=22 Score=29.46 Aligned_cols=50 Identities=26% Similarity=0.311 Sum_probs=37.3
Q ss_pred CCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 67 ~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
+++..+|...+|..|.+++..|+.+|.+++++.. .+.+.+.++.+|++-+
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~ 195 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEI 195 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEE
Confidence 4446666666799999999999999998766643 4467777788888443
No 235
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=76.88 E-value=25 Score=29.38 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=36.1
Q ss_pred eEEEe-eCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 70 TTLIE-VTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 70 ~~vv~-~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
..++. ..+|..|.++...|+.+|.+++++.+ ++.+++.++.+|++-+...
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~ 195 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNS 195 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEEC
Confidence 44454 67788999988899999998655433 4567778888998765543
No 236
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=76.84 E-value=25 Score=29.52 Aligned_cols=52 Identities=25% Similarity=0.296 Sum_probs=37.7
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
+.+++..+|.+ +|-.|.+++..|+.+|.+.++++ ..++.+.+.++.+|++.+
T Consensus 159 ~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 210 (340)
T TIGR00692 159 PISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYV 210 (340)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEE
Confidence 45566767754 68888998889999999855555 335677777788888543
No 237
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=76.76 E-value=22 Score=29.91 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=37.3
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 66 ~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
.+++..+|. ..|..|.++...|+.+|.+.++++ ..++.+.+.++.+|++-+.
T Consensus 162 ~~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 355566665 468899999999999999644554 3455677778888986543
No 238
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=76.75 E-value=40 Score=27.57 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=39.2
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+.++++...+|...+|..|.++...|+..|.+++.+.+. ..+.+.++.+|++-+.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 445666676777777999999999999999996665443 3455666667774443
No 239
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=76.73 E-value=34 Score=28.18 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=38.0
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
+.+.+.++...+|...+|..|.+++..|+.+|.+++++.+.. .+.+.++.+|++
T Consensus 132 ~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~~ 185 (323)
T cd05282 132 EYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD---EQVEELKALGAD 185 (323)
T ss_pred HhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh---HHHHHHHhcCCC
Confidence 334456666766767778999999999999999987665543 344555666764
No 240
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.72 E-value=31 Score=29.70 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=50.5
Q ss_pred HHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 58 ~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
.|-.++.+++| .+++....|.-|...-..|+.+|-+=++++. ..+.+++..+.+||+++.-..
T Consensus 160 HAcr~~~vk~G-s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 160 HACRRAGVKKG-SKVLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhcCcccC-CeEEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeecc
Confidence 45566777887 5578899999999999999999988777754 457888888889999886543
No 241
>PRK06180 short chain dehydrogenase; Provisional
Probab=76.69 E-value=36 Score=27.73 Aligned_cols=32 Identities=34% Similarity=0.257 Sum_probs=26.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
++.+|+..+|.-|.+++......|.+++++..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeC
Confidence 46788999999999999998888998777654
No 242
>PRK12828 short chain dehydrogenase; Provisional
Probab=76.53 E-value=33 Score=26.79 Aligned_cols=55 Identities=22% Similarity=0.074 Sum_probs=39.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+.++|.-|.+++......|.+++++.+...+ ......+...+.+++..+-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 477889999999999999888889997777654322 2233445556777777664
No 243
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=76.41 E-value=36 Score=26.96 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=28.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~ 102 (210)
++.+|+..+|.-|.++|..-...|.+++++....
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence 4778888899999999999888899988886543
No 244
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=76.31 E-value=47 Score=28.16 Aligned_cols=54 Identities=26% Similarity=0.372 Sum_probs=37.1
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCC-cEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~-~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
.+.++++...+|. .+|..|.+++..|+.+|. +++++.+ +..+...++.+|++-+
T Consensus 172 ~~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~~---~~~~~~~~~~~g~~~v 226 (361)
T cd08231 172 AGPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVIDG---SPERLELAREFGADAT 226 (361)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHcCCCeE
Confidence 3444466566666 469999999999999999 5544422 4556667777887543
No 245
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.17 E-value=39 Score=27.23 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=22.0
Q ss_pred CeEEEeeC--CCchHHHHHHHHHHcCCcEEEEE
Q 028372 69 KTTLIEVT--SGNTGVGLAFIAAARGYNLIIVM 99 (210)
Q Consensus 69 ~~~vv~~s--sGN~g~alA~~a~~~g~~~~vvv 99 (210)
+..+|+.. ++--|.++|..-...|.++++.-
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~ 40 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTG 40 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEec
Confidence 36677776 56777788877777888876653
No 246
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=75.97 E-value=8.1 Score=27.55 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=29.9
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
.+.++.++++ ..+||+..-+|.+ ++.+....|++.|++++
T Consensus 7 aa~~~A~~~~--ak~Ivv~T~sG~t----a~~isk~RP~~pIiavt 46 (117)
T PF02887_consen 7 AAVELAEDLN--AKAIVVFTESGRT----ARLISKYRPKVPIIAVT 46 (117)
T ss_dssp HHHHHHHHHT--ESEEEEE-SSSHH----HHHHHHT-TSSEEEEEE
T ss_pred HHHHHHHhcC--CCEEEEECCCchH----HHHHHhhCCCCeEEEEc
Confidence 4567777773 6899999999998 45555678999999987
No 247
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=75.88 E-value=23 Score=30.74 Aligned_cols=56 Identities=32% Similarity=0.404 Sum_probs=41.4
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 028372 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (210)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v 121 (210)
..+.++...+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|+..+.-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 4456666666777779999999999999999875553 2456777788899865543
No 248
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=75.87 E-value=34 Score=29.26 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=39.3
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+...++++.+.+|. .+|..|.+++..|+.+|.+.++.+.. ++.+++.++.+|++.+.
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~--~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGIDI--NPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCEEE
Confidence 34556777666666 56999999999999999953343322 35567777888886443
No 249
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=75.85 E-value=13 Score=32.10 Aligned_cols=55 Identities=36% Similarity=0.421 Sum_probs=41.2
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
..++++...+|...+|..|.+++..|+.+|.+.+++. .++.+.+.++.+|++.+.
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 3456666666666679999999999999999976654 356778888889986543
No 250
>PLN02623 pyruvate kinase
Probab=75.78 E-value=52 Score=30.62 Aligned_cols=117 Identities=11% Similarity=0.062 Sum_probs=69.0
Q ss_pred HHHHHHHcCCcEEEEE---------cC--CCCHHHHHHHHHcCCEEEEECCCC---CH-HHHHHHHHHHHHhCCCeE-E-
Q 028372 84 LAFIAAARGYNLIIVM---------PS--TCSMERRIVLRALGAEIILADSAL---RF-EEILEKGEEILKKTPDGY-L- 146 (210)
Q Consensus 84 lA~~a~~~g~~~~vvv---------p~--~~~~~~~~~~~~~Ga~v~~v~~~~---~~-~~~~~~a~~~~~~~~~~~-~- 146 (210)
+...|+..|.++.+.. |. .+...........|++.+....+. .| .++.+...+.+++-+..+ +
T Consensus 368 Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~ 447 (581)
T PLN02623 368 IIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEG 447 (581)
T ss_pred HHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcccc
Confidence 5557899999998643 22 223356667777899999887541 12 345555554444322211 1
Q ss_pred --c---CCCCCChhHHHHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 147 --L---RQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 147 --~---~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
. ....+.. ........+.++.+.++ .. ||+..-+|.++--+ ....|.+.|++++
T Consensus 448 ~~~~~~~~~~~~~-~~~~ia~sA~~~A~~l~--a~-Ivv~T~sG~tA~~l----Sr~RP~~pI~avT 506 (581)
T PLN02623 448 TTPPNLGQAFKNH-MSEMFAFHATMMANTLG--TS-IIVFTRTGFMAILL----SHYRPSGTIFAFT 506 (581)
T ss_pred hhhhhhccccCCC-hHHHHHHHHHHHHHhcC--Cc-EEEECCCcHHHHHH----HhhCCCCCEEEEC
Confidence 0 0101111 12334555667777774 34 99999999995544 4568999999886
No 251
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=75.77 E-value=25 Score=29.10 Aligned_cols=57 Identities=28% Similarity=0.415 Sum_probs=40.7
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
.+.+.+.++.+.+|. ..|-.|.+++..|+.+|.+++++.+ .+.+.+.++.+|+....
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLVGR---HSEKLALARRLGVETVL 204 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCcEEe
Confidence 345667777676666 4789999999999999999544422 35677777778886543
No 252
>PRK06482 short chain dehydrogenase; Provisional
Probab=75.77 E-value=35 Score=27.68 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=26.8
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+.+|+..+|.-|.++|..-...|.+++++...
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56888899999999999888889988777653
No 253
>PRK07201 short chain dehydrogenase; Provisional
Probab=75.68 E-value=28 Score=32.28 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=25.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+..+|+..+|..|.++|..-...|.+++++...
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~~~r~ 404 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFLVARN 404 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 467888888899999988877778877776543
No 254
>PRK12939 short chain dehydrogenase; Provisional
Probab=75.58 E-value=24 Score=27.85 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=37.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC-CHHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~-~~~~~~~~~~~Ga~v~~v~~ 123 (210)
+..+|+..+|.-|.++|......|.+++++..... .......++..+.++..+..
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAA 63 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 47788888999999999998889998777643221 12223344556766665543
No 255
>PRK07454 short chain dehydrogenase; Provisional
Probab=75.52 E-value=25 Score=27.85 Aligned_cols=71 Identities=25% Similarity=0.235 Sum_probs=43.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHH
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILK 139 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~a~~~~~ 139 (210)
++.+|+.++|..|.+++......|.+++++...... ....+.++..+.++..+..+- +.++..+..++..+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 366888888999999999999999988887653221 122333455566665554321 23444444444443
No 256
>PRK06348 aspartate aminotransferase; Provisional
Probab=75.28 E-value=53 Score=28.30 Aligned_cols=85 Identities=13% Similarity=0.200 Sum_probs=45.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CCCHHHHHHHHHHHHHhCCCeEEc
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS--ALRFEEILEKGEEILKKTPDGYLL 147 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~--~~~~~~~~~~a~~~~~~~~~~~~~ 147 (210)
..|+..+++.+|..++..+-. +-.-.|+++.-.-..-...++..|++++.++. ++++.-..+..++..++....+++
T Consensus 90 ~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l 168 (384)
T PRK06348 90 NEIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIIL 168 (384)
T ss_pred hhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEE
Confidence 457777777777766555432 22234555554444455566778999988863 222211112222222334466776
Q ss_pred CCCCCChh
Q 028372 148 RQFENPAN 155 (210)
Q Consensus 148 ~~~~n~~~ 155 (210)
....||..
T Consensus 169 ~~p~NPtG 176 (384)
T PRK06348 169 NSPNNPTG 176 (384)
T ss_pred eCCCCCCC
Confidence 54455543
No 257
>PRK06057 short chain dehydrogenase; Provisional
Probab=75.28 E-value=40 Score=26.92 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=26.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
++.+|+..+|.-|.+++..-...|.+++++..
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r 39 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDI 39 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 47788899999999999988888988777644
No 258
>PRK06172 short chain dehydrogenase; Provisional
Probab=75.14 E-value=25 Score=28.05 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=38.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+..+|.-|.++|......|.+++++...... ....+.++..+.++..+..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVAC 63 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 477888999999999999988889987777544322 2234455666777765543
No 259
>PRK08267 short chain dehydrogenase; Provisional
Probab=75.13 E-value=39 Score=27.06 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=25.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+.+|+..+|..|.+++......|.+++++.+
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r 33 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDI 33 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 5688888899999999988888988777654
No 260
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=74.90 E-value=43 Score=28.57 Aligned_cols=57 Identities=21% Similarity=0.198 Sum_probs=39.2
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+...+++|...+|. .+|..|.+++..|+.+|.+.++++.. .+.+++.++.+|++.+.
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 33456777665555 56999999999999999843333322 35677788889986544
No 261
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.90 E-value=47 Score=27.45 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=30.1
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcC----CCCEEEEE
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENN----PDIKVVLR 207 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~----~~~~vigv 207 (210)
...+++++. +++|+|++. +...+.|+.+++++.+ .++.|+|+
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~ 237 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGV 237 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEec
Confidence 445666554 568988864 6677789999999865 36788875
No 262
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=74.86 E-value=23 Score=29.05 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=34.1
Q ss_pred HHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCChhHHHHHHhHHHHHHHhhCCCCCEEEEccC
Q 028372 110 VLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIG 183 (210)
Q Consensus 110 ~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG 183 (210)
.+...||++.+.-.. +....+.++++++.+ ..++-|.+-.. .+.-..+..+|-+++ +++|.+|.++|
T Consensus 27 ~l~~~GAeL~fTy~~---e~l~krv~~la~~~~-s~~v~~cDV~~--d~~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 27 ALAEQGAELAFTYQG---ERLEKRVEELAEELG-SDLVLPCDVTN--DESIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHcCCEEEEEecc---HHHHHHHHHHHhhcc-CCeEEecCCCC--HHHHHHHHHHHHHhh-CcccEEEEEec
Confidence 455567777766532 233445566666653 22333332221 233344555555555 46777777665
No 263
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=74.82 E-value=43 Score=26.96 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=26.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+.+++.-|.++|..-...|.+++++.+
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 47788888899999999988888998776544
No 264
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=74.79 E-value=8.1 Score=35.51 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=39.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCC------------------CCHHHHHHHHHcCCEEEEE
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST------------------CSMERRIVLRALGAEIILA 121 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~------------------~~~~~~~~~~~~Ga~v~~v 121 (210)
+.|+...+|..|.+.|+.++++|.+++++=... ....+++.++.+|+++..-
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 568889999999999999999999987764221 1245667788899987653
No 265
>PRK09134 short chain dehydrogenase; Provisional
Probab=74.54 E-value=36 Score=27.28 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=38.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~--~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+..+|.-|.+++......|.+++++...+... .-.+.++..|.++..+..
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQA 66 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4678999999999999999999999887765543211 223344455777766553
No 266
>PRK12827 short chain dehydrogenase; Provisional
Probab=74.29 E-value=41 Score=26.49 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=26.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
++.+|+..+|-.|.++|......|.+++++..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence 46788889999999999988888998777654
No 267
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=74.14 E-value=15 Score=27.93 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=35.9
Q ss_pred CCchHHHHHHHHHHcCCcEEEEEcCC--CCH--HHH----HHHHHcCCEEEEEC
Q 028372 77 SGNTGVGLAFIAAARGYNLIIVMPST--CSM--ERR----IVLRALGAEIILAD 122 (210)
Q Consensus 77 sGN~g~alA~~a~~~g~~~~vvvp~~--~~~--~~~----~~~~~~Ga~v~~v~ 122 (210)
-+|.+.|++..++++|..++++.|+. .++ ..+ +..+..|.++..++
T Consensus 12 ~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 12 HNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred CChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 38999999999999999999999988 444 223 33455588888885
No 268
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=73.79 E-value=46 Score=26.92 Aligned_cols=56 Identities=30% Similarity=0.419 Sum_probs=39.6
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
.+.+.++...+|...+|..|.+++..++.+|.+++++.. ++.+.+.++.+|++-+.
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 186 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS---SEEKAELARAAGADHVI 186 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHCCCCEEE
Confidence 455666767667666899999999999999998666543 34556666777764443
No 269
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=73.55 E-value=51 Score=27.28 Aligned_cols=53 Identities=26% Similarity=0.334 Sum_probs=37.1
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHH-cCCE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAE 117 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~-~Ga~ 117 (210)
.+.+.++...+|...+|..|.+++..++.+|.+++++.+ ...+...++. +|++
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~ 193 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFD 193 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCc
Confidence 345666666667666799999999999999998666543 3345555555 7764
No 270
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=73.52 E-value=26 Score=32.86 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=40.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC---------C---------HHHHHHHHHcCCEEEEE
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC---------S---------MERRIVLRALGAEIILA 121 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~---------~---------~~~~~~~~~~Ga~v~~v 121 (210)
.+.|+...+|..|.+.|+..++.|+++++|-.... + ....+.++.+|.+++.-
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 36688899999999999999999999999854431 1 13466778899888653
No 271
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=73.48 E-value=52 Score=27.31 Aligned_cols=54 Identities=26% Similarity=0.361 Sum_probs=39.2
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
.+.+.++...+|.+ +|..|.+++..|+..|.++++ +..+....+.+.++.+|++
T Consensus 159 ~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 34556666667754 789999999999999999544 3333346677788889985
No 272
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=73.43 E-value=51 Score=27.29 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=39.6
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
.+.++++...+|...+|-.|.+++..++.+|.+++++.+ +..+.+.++.+|++-+
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 188 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRP 188 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceE
Confidence 355677777777777899999999999999998766654 2344555566776433
No 273
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=73.42 E-value=28 Score=24.22 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=23.6
Q ss_pred EeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 73 v~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+..+.|+.|..++..-+..+.+++++-. .+.+.+.++..|.+++.
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~---d~~~~~~~~~~~~~~i~ 46 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDR---DPERVEELREEGVEVIY 46 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTSEEEE
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEEC---CcHHHHHHHhccccccc
Confidence 4455677777777776665545555433 23334444444544333
No 274
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.33 E-value=40 Score=26.82 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=43.2
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHH
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSAL-RFEEILEKGEEILK 139 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~a~~~~~ 139 (210)
..+|+..+|.-|.++|..-...|.+++++.....+ ....+.++..+.++..+..+- +.++..+..++..+
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQA 76 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56888999999999999988889988777644322 223444555666666554321 23333334444433
No 275
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=73.31 E-value=44 Score=26.49 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=27.3
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+++.+|+..+|..|.+++..-...|.+++++...
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 3477899999999999998887889887766543
No 276
>PRK14030 glutamate dehydrogenase; Provisional
Probab=73.17 E-value=26 Score=31.42 Aligned_cols=52 Identities=17% Similarity=0.079 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEE
Q 028372 48 KDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVM 99 (210)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvv 99 (210)
=-|+..+.+..+.+..-.....++|+.-..||-|..+|.....+|.+++.+.
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavS 258 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTIS 258 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 3467777777665433234444778888999999999999999999999953
No 277
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=73.01 E-value=45 Score=26.39 Aligned_cols=55 Identities=31% Similarity=0.479 Sum_probs=38.0
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
...+.++.+.++...++ .|.+++..++..|.+++++.+. +.+.+.++.+|++.+.
T Consensus 129 ~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 183 (271)
T cd05188 129 AGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADHVI 183 (271)
T ss_pred ccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCceec
Confidence 33445666666666666 9999999999999877666443 4556667778875443
No 278
>PRK05876 short chain dehydrogenase; Provisional
Probab=72.95 E-value=30 Score=28.32 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=43.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~a~~~~~~ 140 (210)
+..+|+..+|.-|.++|..-...|.+++++...... ....+.++..|.++..+..+- +.++..+...+..++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467888899999999999988899987665433211 122334455677776554331 233334444444333
No 279
>PRK06484 short chain dehydrogenase; Validated
Probab=72.93 E-value=52 Score=29.55 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=25.3
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEE
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVM 99 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvv 99 (210)
++..+|+..++.-|.++|..-...|.+++++-
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~G~~V~~~~ 36 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARAGDQVVVAD 36 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 34778888888889999988888888776653
No 280
>PRK06128 oxidoreductase; Provisional
Probab=72.79 E-value=48 Score=27.45 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=45.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC---CHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHH
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILK 139 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~---~~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~a~~~~~ 139 (210)
++.+|+..+|--|.++|..-...|.++++...... .....+.++..|.+++.+..+- +.++..+...+..+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 47889999999999999998889999877653321 1233455666787776655432 23333344444433
No 281
>PRK07024 short chain dehydrogenase; Provisional
Probab=72.79 E-value=47 Score=26.59 Aligned_cols=32 Identities=28% Similarity=0.208 Sum_probs=25.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
++.+|+.++|--|.++|..-...|.+++++..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r 34 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVAR 34 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 36788888999999999888888887766644
No 282
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=72.65 E-value=51 Score=26.86 Aligned_cols=57 Identities=28% Similarity=0.311 Sum_probs=39.7
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
.+.+.+.++...+|...+|..|.+++..++.+|.+++++.+. ..+.+.++.+|++.+
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 188 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGADIA 188 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCcEE
Confidence 345667777777777778999999999999999987665442 333444556665433
No 283
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.65 E-value=49 Score=26.74 Aligned_cols=71 Identities=21% Similarity=0.152 Sum_probs=38.0
Q ss_pred CeEEEeeC--CCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHH-HcCC-EEEEECCCCCHHHHHHHHHHHHHh
Q 028372 69 KTTLIEVT--SGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGA-EIILADSALRFEEILEKGEEILKK 140 (210)
Q Consensus 69 ~~~vv~~s--sGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~-~~Ga-~v~~v~~~~~~~~~~~~a~~~~~~ 140 (210)
+..+|+.. ++--|.++|..-...|.++++...........+.+. ..|. ..+.++-. +.++..+...+..++
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVA-SDDEINQVFADLGKH 81 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCC-CHHHHHHHHHHHHHH
Confidence 36677773 556788888888888998877543222223333343 2343 23334432 344444444444443
No 284
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=72.49 E-value=18 Score=32.18 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=37.7
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
+...+| ++|+....|.-|..+|..++.+|.+++++ . ..+.+....+.+|++++
T Consensus 197 ~~~l~G-ktVvViG~G~IG~~va~~ak~~Ga~ViV~-d--~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAG-KVAVVAGYGDVGKGCAQSLRGQGARVIVT-E--VDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEE-E--CChhhHHHHHhcCCEEc
Confidence 333445 56888999999999999999999975553 2 23455566666777543
No 285
>PRK08017 oxidoreductase; Provisional
Probab=72.44 E-value=47 Score=26.39 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=38.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
+.+|+..+|.-|.++|......|.+++++... ..+.+.++..|.+.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 56888888999999999988889987666443 3445555667887777764
No 286
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=72.32 E-value=29 Score=27.42 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=37.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA 124 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~~~ 124 (210)
++.+|+..+|.-|.++|..-...|.+++++...... ......++..+.++..+..+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d 60 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACD 60 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 477899999999999999988889987776543321 11223345556666665543
No 287
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=72.26 E-value=30 Score=27.60 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=37.3
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
+++.+|+..+|.-|.++|......|.+++++...... ......++..|.++..+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALA 66 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 3477888899999999999888889988777554211 222334555676555544
No 288
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=72.25 E-value=46 Score=26.16 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=25.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+.+|+.++|.-|.++|..-...|.++++....
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 56788888999999998877778877666554
No 289
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.24 E-value=35 Score=28.50 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=39.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC--CHHHHHHHHHcCCEEEEECCC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILADSA 124 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~--~~~~~~~~~~~Ga~v~~v~~~ 124 (210)
+..+|+..+|.-|.++|..-...|.++++.-.... .....+.++..|.+++.+..+
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~D 70 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGD 70 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCC
Confidence 47788889999999999988888998776543222 123345566678888766643
No 290
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=72.19 E-value=23 Score=28.43 Aligned_cols=54 Identities=22% Similarity=0.056 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC
Q 028372 50 RIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC 103 (210)
Q Consensus 50 R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~ 103 (210)
||..+.+..+.+.-......++++.-..||-|..+|......|.+++.+.+.+-
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 566666666544322233346788899999999999999999999999887643
No 291
>PRK07890 short chain dehydrogenase; Provisional
Probab=71.98 E-value=31 Score=27.47 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=36.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+.++|.-|.++|......|.+++++...... ......++..|.++..+..
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPT 61 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEec
Confidence 477899999999999999999999987776543211 1222333445666655443
No 292
>PRK10083 putative oxidoreductase; Provisional
Probab=71.84 E-value=55 Score=27.31 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=39.8
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHH-cCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~-~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
.+...++++.+.+|.. .|-.|.+++..|+. +|.+.++.+.. .+.+.+.++.+|++-+.
T Consensus 153 ~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 153 TGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 3455667776655655 78888888888886 59886666543 46777777888885443
No 293
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=71.84 E-value=54 Score=26.81 Aligned_cols=55 Identities=31% Similarity=0.382 Sum_probs=37.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCc-EEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~-~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
+...++++...+|.+ +|-.|.+++..|+.+|.+ ++++.+ .+.+...++.+|++-+
T Consensus 123 ~~~~~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~ 178 (312)
T cd08269 123 RRGWIRAGKTVAVIG-AGFIGLLFLQLAAAAGARRVIAIDR---RPARLALARELGATEV 178 (312)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC---CHHHHHHHHHhCCceE
Confidence 355566776766764 678999999999999999 554422 2455566677787433
No 294
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=71.74 E-value=60 Score=27.72 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=38.6
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
...++++...+|. .+|..|.+++..|+.+|.+.++.+.. .+.+.+.++.+|++.++
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i 236 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVI 236 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEe
Confidence 4456666666666 56899999999999999975444433 35566677778875443
No 295
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=71.73 E-value=37 Score=26.95 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=38.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCH-HHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~-~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+..+|..|.++|..-...|.+++++.....+. .....++..+.++..+..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAM 60 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 4678888899999999998888899988876543322 223445556777665544
No 296
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=71.67 E-value=53 Score=27.47 Aligned_cols=53 Identities=26% Similarity=0.289 Sum_probs=37.2
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEE
Q 028372 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (210)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v 118 (210)
..+.++...+|. +.|..|.+++..|+.+|+..++++ .....+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 345566666666 578999999999999998433444 33456667777889864
No 297
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=71.50 E-value=25 Score=29.12 Aligned_cols=52 Identities=12% Similarity=-0.058 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
-|+..+.+..+.+.-......++++.-..||-|..+|.....+|.+++.+.+
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4677777777655433333346788899999999999999999999998766
No 298
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=71.50 E-value=45 Score=29.69 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=24.3
Q ss_pred eCCCchHHHHHHHHHHcCCcEEEEEcCCCC
Q 028372 75 VTSGNTGVGLAFIAAARGYNLIIVMPSTCS 104 (210)
Q Consensus 75 ~ssGN~g~alA~~a~~~g~~~~vvvp~~~~ 104 (210)
.+-|.+..+|+.+-+.+|.++.+++|....
T Consensus 17 GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~ 46 (473)
T TIGR02095 17 GGLADVVGALPKALAALGHDVRVLLPAYGC 46 (473)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecCCcC
Confidence 344778888888888999999999997543
No 299
>PRK06949 short chain dehydrogenase; Provisional
Probab=71.39 E-value=28 Score=27.74 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=28.2
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+++.+|+..+|.-|.++|......|.+++++...
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3577888899999999999988899987777554
No 300
>PRK06484 short chain dehydrogenase; Validated
Probab=71.37 E-value=63 Score=29.00 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=25.3
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
++..+|+..+|.-|.++|..-...|.+++++-.
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r 301 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGDRLLIIDR 301 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 346688888888888888888888887766543
No 301
>PRK07035 short chain dehydrogenase; Provisional
Probab=71.27 E-value=36 Score=27.07 Aligned_cols=71 Identities=18% Similarity=0.145 Sum_probs=42.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHH
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILK 139 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~a~~~~~ 139 (210)
+..+|+..+|.-|.+++......|.+++++...... ....+.+...|.++..+..+- +.++......+..+
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 467888999999999999988899987777543211 222334445566665544321 23333333444433
No 302
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=71.23 E-value=28 Score=34.39 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=28.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
.+.|+.-.+|..|.+.|+..++.|++++||=.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEee
Confidence 46789999999999999999999999999844
No 303
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.11 E-value=56 Score=26.71 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=22.7
Q ss_pred CeEEEeeCC--CchHHHHHHHHHHcCCcEEEEE
Q 028372 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVM 99 (210)
Q Consensus 69 ~~~vv~~ss--GN~g~alA~~a~~~g~~~~vvv 99 (210)
+..+|+.++ +.-|.++|......|.++++..
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~ 43 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTY 43 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 356776665 5688888888888898876653
No 304
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=71.08 E-value=36 Score=27.82 Aligned_cols=52 Identities=33% Similarity=0.458 Sum_probs=38.0
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
.+.+.++...++...+|..|.+++..|+..|.+++.+.++ .+.+.++.+|++
T Consensus 138 ~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 138 AGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 3445666666666667999999999999999987766542 556666777764
No 305
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=71.04 E-value=54 Score=26.47 Aligned_cols=31 Identities=26% Similarity=0.228 Sum_probs=22.9
Q ss_pred CeEEEeeCC--CchHHHHHHHHHHcCCcEEEEE
Q 028372 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVM 99 (210)
Q Consensus 69 ~~~vv~~ss--GN~g~alA~~a~~~g~~~~vvv 99 (210)
+..+|+.++ +--|.++|......|.++++..
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~ 39 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITY 39 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEe
Confidence 466777754 5688888888888899877654
No 306
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=70.91 E-value=19 Score=27.23 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=28.5
Q ss_pred EEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC
Q 028372 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC 103 (210)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~ 103 (210)
+|...+|+.|..++......|.+++++++...
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 57778899999999999999999999998754
No 307
>PRK06500 short chain dehydrogenase; Provisional
Probab=70.55 E-value=46 Score=26.23 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=35.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
++.+|+..+|..|.+++......|.+++++.... .......+.+|.++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~ 58 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDP--ASLEAARAELGESALVIR 58 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH--HHHHHHHHHhCCceEEEE
Confidence 4778899999999999999888999876654321 111223344577765544
No 308
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=70.26 E-value=57 Score=26.48 Aligned_cols=54 Identities=26% Similarity=0.313 Sum_probs=38.3
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
+.+.+++..+|...+|..|.+++..++.+|.++++..+. ..+.+.++.+|++-+
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 193 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAV 193 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEE
Confidence 456666677777778999999999999999987666443 344555566676433
No 309
>PLN00175 aminotransferase family protein; Provisional
Probab=70.17 E-value=76 Score=27.84 Aligned_cols=84 Identities=10% Similarity=0.076 Sum_probs=43.7
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHhCCCeEEcCC
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKTPDGYLLRQ 149 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (210)
.|+..+++..|..++..+- ++-.-.|++++-.-..-...++.+|++++.++-. .++.-..+..++........++++.
T Consensus 117 ~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~ 195 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINT 195 (413)
T ss_pred CEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecC
Confidence 3666666677766655543 3322344444433344456678899999988742 1111111222222222335677765
Q ss_pred CCCChh
Q 028372 150 FENPAN 155 (210)
Q Consensus 150 ~~n~~~ 155 (210)
..||..
T Consensus 196 p~NPtG 201 (413)
T PLN00175 196 PHNPTG 201 (413)
T ss_pred CCCCCC
Confidence 556653
No 310
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=70.14 E-value=64 Score=26.96 Aligned_cols=53 Identities=36% Similarity=0.513 Sum_probs=37.5
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
+...+.++...++. .+|..|.+++..|+.+|++++++.+ +..+...++.+|++
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~ 205 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGAD 205 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCC
Confidence 44556777666666 5678899999999999999766643 35566666667753
No 311
>PRK07814 short chain dehydrogenase; Provisional
Probab=70.07 E-value=36 Score=27.48 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=35.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
++.+|+.++|--|.++|......|.+++++...... ....+.++..|.++..+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 65 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVA 65 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 477889999999999999888889988776553211 122233444465555443
No 312
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=70.00 E-value=70 Score=27.40 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=40.7
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+.+.++++.+.+|. .+|..|.+++..|+.+|.+.++.+ ...+.+++.++.+|++.+.
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 34556777666665 569999999999999999534433 2356788888999996544
No 313
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=69.97 E-value=42 Score=28.94 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=39.8
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~ 124 (210)
+.++..++|..|..++..+...+-.-.|++|..+-......++..|++++.++.+
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4577778888876665554333333577888877777788889999999999854
No 314
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=69.81 E-value=67 Score=27.43 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=37.8
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
+...+.++...+|. +.|..|.+++..|+.+|.+.++.+.. +..+.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 34556677666665 67999999999999999985554432 45566666777774
No 315
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=69.75 E-value=37 Score=28.55 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=36.4
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEE
Q 028372 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (210)
Q Consensus 66 ~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v 118 (210)
.++...+|...+|..|.+++..|+.+|.+++.... ..+.+.++.+|++-
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~~----~~~~~~~~~~g~~~ 201 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTAS----PKNFDLVKSLGADA 201 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEEC----cccHHHHHhcCCCE
Confidence 45666677777799999999999999998776542 25666667788743
No 316
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=69.74 E-value=35 Score=28.34 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=38.7
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v 118 (210)
+...++++...+|. ..|..|.+++..++.+|.+++++.+.. .+++.++.+|++-
T Consensus 161 ~~~~~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~~---~~~~~~~~~g~~~ 214 (329)
T cd08298 161 KLAGLKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRSG---EHQELARELGADW 214 (329)
T ss_pred HhhCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCCh---HHHHHHHHhCCcE
Confidence 45566677565664 578899999999999999876665543 5666667788743
No 317
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=69.71 E-value=35 Score=29.35 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=46.3
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHH----hCCCe
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILK----KTPDG 144 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~a~~~~~----~~~~~ 144 (210)
..|+..+++..+..++..+....-+-.|+++.-+-..-...++.+|++++.++.+. ++.-..+..++..+ ...+.
T Consensus 92 ~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~ 171 (374)
T PRK02610 92 ANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRV 171 (374)
T ss_pred HHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceE
Confidence 34666677777776555554433222455555444555667788999999987431 11101111222222 23467
Q ss_pred EEcCCCCCChh
Q 028372 145 YLLRQFENPAN 155 (210)
Q Consensus 145 ~~~~~~~n~~~ 155 (210)
+|+....||..
T Consensus 172 i~l~~P~NPTG 182 (374)
T PRK02610 172 VFVVHPNSPTG 182 (374)
T ss_pred EEEeCCCCCCC
Confidence 77765566654
No 318
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=69.61 E-value=65 Score=26.84 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=38.5
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHH-cCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~-~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+...++++...+|.. +|-.|.+++..|+. .|.+++++.+ +..+++.++.+|++.+.
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 212 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLTI 212 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 444567776766766 68899998888997 4988666543 34566666777875543
No 319
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=69.53 E-value=35 Score=28.58 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=34.4
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEE
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v 118 (210)
+.+.+|...+|..|.+++..|+.+|.+++++..+ .+.+.++.+|++-
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~ 209 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADD 209 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCce
Confidence 6566676667999999999999999987665542 2555666677643
No 320
>PRK08264 short chain dehydrogenase; Validated
Probab=69.35 E-value=27 Score=27.48 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=27.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCC-cEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~-~~~vvvp~ 101 (210)
+..+|+..+|.-|.++|......|. +++++...
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 4678889999999999999999998 77666544
No 321
>PLN02342 ornithine carbamoyltransferase
Probab=69.31 E-value=55 Score=28.38 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=40.5
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC--CHHHHHHHHHcCC-EEEEEC
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGA-EIILAD 122 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~--~~~~~~~~~~~Ga-~v~~v~ 122 (210)
+.|.++ |.+..+.+-..|.+.+++.+++.+|++++++.|+.. +...++.++..|. ++...+
T Consensus 188 ~~G~l~-glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 188 HIGRLE-GTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred HhCCcC-CCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 456544 334344444468999999999999999999999864 3344555555664 555443
No 322
>PLN02827 Alcohol dehydrogenase-like
Probab=69.22 E-value=48 Score=28.65 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=39.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
+.+.+++|...+|. ..|--|.+++..|+.+|.+.++.+.. .+.+.+.++.+|++-+
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDF 242 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEE
Confidence 34556777665555 46889999999999999875555432 4567777788888644
No 323
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.11 E-value=35 Score=26.99 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=38.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+.++|--|.+++..-...|.++++....... ......++..|.++..+..
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLA 63 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEe
Confidence 467888888999999999888899987776543321 2334456667777665543
No 324
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.07 E-value=61 Score=26.36 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=21.6
Q ss_pred CeEEEeeCCC--chHHHHHHHHHHcCCcEEEEE
Q 028372 69 KTTLIEVTSG--NTGVGLAFIAAARGYNLIIVM 99 (210)
Q Consensus 69 ~~~vv~~ssG--N~g~alA~~a~~~g~~~~vvv 99 (210)
+..+|+..++ .-|.++|..-...|.++++.-
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~ 39 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTY 39 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEe
Confidence 3566777664 577778888777888866543
No 325
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=68.99 E-value=41 Score=26.91 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=37.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA 124 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~~~ 124 (210)
++.+|+..+|.-|.++|..-...|.+++++...... ....+.++..+.++..+..+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 69 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAAD 69 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 477888888999999998888889987666543211 12223345567777665543
No 326
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=68.82 E-value=56 Score=27.45 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=34.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
+++..-..|..|.+++..++.+|.+++++-+. +.+....+.+|++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 45666777999999999999999877776443 344556667787654
No 327
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=68.78 E-value=77 Score=27.39 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=40.8
Q ss_pred CCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEeeCCCchHHHHHHHHHHc--CCcEEEEEcCCCCHHHHHHHHHcCCEE
Q 028372 43 PCSSVKDRIAYSMIKDAEDKGL--ITPGKTTLIEVTSGNTGVGLAFIAAAR--GYNLIIVMPSTCSMERRIVLRALGAEI 118 (210)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~--~~~~~~~vv~~ssGN~g~alA~~a~~~--g~~~~vvvp~~~~~~~~~~~~~~Ga~v 118 (210)
+.|.-+.|-+....... ..|. +.+. ..|+..+++..+..++..+-.- |-.-.|++|.-.-..-...++.+|+++
T Consensus 64 ~~G~~~lr~~ia~~~~~-~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 64 TAGLPALREAIAAWLER-RYGLPALDPA-TQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEP 141 (396)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCcCCcc-ceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEE
Confidence 45666666544332221 2242 3332 2466667777766555443321 112344445433333345567899999
Q ss_pred EEECC
Q 028372 119 ILADS 123 (210)
Q Consensus 119 ~~v~~ 123 (210)
+.++-
T Consensus 142 ~~vp~ 146 (396)
T PRK09147 142 YFLNC 146 (396)
T ss_pred EEecc
Confidence 99874
No 328
>PRK07677 short chain dehydrogenase; Provisional
Probab=68.53 E-value=42 Score=26.74 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=35.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+..+|.-|.++|......|.+++++...... ....+.++..+.+++.+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQ 56 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 366888889999999999988899987666443221 122233444566665554
No 329
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=68.50 E-value=50 Score=27.44 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=37.7
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
..+.++...++. ..|..|.+++..++.+|.+++++.+ ...+.+.++.+|++.+.
T Consensus 158 ~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 211 (330)
T cd08245 158 AGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVV 211 (330)
T ss_pred hCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEe
Confidence 456666666666 5566999999999999998766654 34455666777775443
No 330
>PRK12744 short chain dehydrogenase; Provisional
Probab=68.30 E-value=44 Score=26.73 Aligned_cols=70 Identities=21% Similarity=0.168 Sum_probs=42.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC-C----HHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHH
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-S----MERRIVLRALGAEIILADSAL-RFEEILEKGEEIL 138 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~-~----~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~a~~~~ 138 (210)
+..+|+..+|.-|.++|..-...|.+++++..... . ....+.++..+.++..+..+- +.++..+...+..
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 46788888899999999988888999776653221 1 122334555677776554321 2333333444443
No 331
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=68.21 E-value=14 Score=28.62 Aligned_cols=41 Identities=27% Similarity=0.350 Sum_probs=30.4
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 162 t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
..+.++.++ +-.||.|+.-.|=|.++ ++|+.+|++++|+-.
T Consensus 55 ~a~~~L~~~-Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 55 RAARQLRAQ-GFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHc-CCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEEE
Confidence 344444444 45699999998887754 899999999998754
No 332
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=68.20 E-value=41 Score=29.48 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=62.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCC-CHH-HHHHHHHHHHHhCCCeEEc
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFE-EILEKGEEILKKTPDGYLL 147 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~-~~~-~~~~~a~~~~~~~~~~~~~ 147 (210)
+..+..+||..+..+|+.+-..|=.-.|++|+-+.......+-..||+.+++|-+. ++. +....-+.+......-..+
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipV 129 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPV 129 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEe
Confidence 66888899999999888865577777899999999999999999999999999642 221 1111112222222234455
Q ss_pred CCCCCChhHHHHHHhHH
Q 028372 148 RQFENPANPKIHYETTG 164 (210)
Q Consensus 148 ~~~~n~~~~~~g~~t~~ 164 (210)
+-+.++.. +.....++
T Consensus 130 hl~G~~~d-m~~i~~la 145 (374)
T COG0399 130 HLAGQPCD-MDAIMALA 145 (374)
T ss_pred hhccCCCC-HHHHHHHH
Confidence 66667765 44333333
No 333
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=68.14 E-value=67 Score=26.41 Aligned_cols=56 Identities=29% Similarity=0.448 Sum_probs=39.0
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEE
Q 028372 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (210)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v 118 (210)
.+...++++...+|...+|..|.+++..|+.+|.+++.+.+ ...+.+.++.+|++-
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 190 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGADV 190 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 34455667767777777899999999999999998655543 233445556677643
No 334
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=67.79 E-value=58 Score=26.85 Aligned_cols=51 Identities=31% Similarity=0.425 Sum_probs=37.2
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCC
Q 028372 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA 116 (210)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga 116 (210)
..+.++.+.+|...+|..|.+++..++..|.+++++... +.+.+.++.+|+
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~ 208 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGA 208 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCC
Confidence 556677777788888999999999999999998777642 233444455554
No 335
>PLN02702 L-idonate 5-dehydrogenase
Probab=67.73 E-value=61 Score=27.55 Aligned_cols=57 Identities=28% Similarity=0.366 Sum_probs=41.1
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+...+.++...+|. ..|..|.++...++.+|.+.++.++. ...+.+.++.+|++...
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 34456667666665 57889999999999999986665544 46777778888986543
No 336
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=67.72 E-value=49 Score=27.50 Aligned_cols=49 Identities=24% Similarity=0.250 Sum_probs=35.1
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHc-CCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~-g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
+...+|...+|..|.+++..|+.+ |.+++.+.+. ..+.+.++.+|++-+
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~ 198 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHV 198 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEE
Confidence 556667767789999999899988 9987766443 345566666777443
No 337
>PRK08263 short chain dehydrogenase; Provisional
Probab=67.58 E-value=65 Score=26.10 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=25.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+..+|-.|.++|......|.+++++..
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r 35 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVATAR 35 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 36688888999999999998888888666554
No 338
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=67.57 E-value=69 Score=28.11 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=44.7
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHhCCCeEEcC-
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKTPDGYLLR- 148 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~a~~~~~~~~~~~~~~- 148 (210)
.|+..+++..+..++..+-..-=+ .|+++.-.-..-...++.+|++++.++-+. +++ .+..++..++....+|+.
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pgd-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~p 219 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPGD-SVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILTP 219 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCCC-EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEECC
Confidence 577777778877666554322113 344444333444667788999999987532 222 122223333344666775
Q ss_pred CCCCChh
Q 028372 149 QFENPAN 155 (210)
Q Consensus 149 ~~~n~~~ 155 (210)
...||..
T Consensus 220 ~p~NPTG 226 (431)
T PRK15481 220 RAHNPTG 226 (431)
T ss_pred CCCCCCC
Confidence 4456654
No 339
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=67.49 E-value=45 Score=27.98 Aligned_cols=51 Identities=27% Similarity=0.395 Sum_probs=36.0
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 66 ~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
.++...+|.+ .|..|.+++..|+.+|.+.++++ ..+..+....+.+|++-+
T Consensus 162 ~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 212 (341)
T cd05281 162 VSGKSVLITG-CGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVV 212 (341)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCccee
Confidence 4555666654 68999999999999998644555 335567777777887543
No 340
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=67.48 E-value=25 Score=31.38 Aligned_cols=51 Identities=20% Similarity=0.198 Sum_probs=40.3
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCC---C--CHHHHHHHHHcCCEEEE
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST---C--SMERRIVLRALGAEIIL 120 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~---~--~~~~~~~~~~~Ga~v~~ 120 (210)
+.++...+||.|.-+|..+.++|.+++++.+.. . .....+.++..|.+++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 468889999999999999999999999988653 2 23444667788888764
No 341
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=67.15 E-value=78 Score=28.27 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=47.7
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHH----HHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEE
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIV----LRALGAEIILADSALRFEEILEKGEEILKKTPDGYL 146 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~----~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (210)
..+..+||-.|..++..+- ++---.|+++...-....+. ++.+|+++.+++...+.++ .++..+++...+|
T Consensus 78 ~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~----l~~~I~~~Tk~I~ 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADE----IVALANDKTKLVY 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHH----HHHhCCcCCeEEE
Confidence 3567888988888887654 33334566676544333333 6889999999986322222 2222223336777
Q ss_pred cCCCCCCh
Q 028372 147 LRQFENPA 154 (210)
Q Consensus 147 ~~~~~n~~ 154 (210)
+....||.
T Consensus 153 ~e~pgnP~ 160 (432)
T PRK06702 153 AESLGNPA 160 (432)
T ss_pred EEcCCCcc
Confidence 76667776
No 342
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.11 E-value=69 Score=26.24 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=22.4
Q ss_pred CeEEEeeCC--CchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ss--GN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+..+ +--|.++|..-...|.++++.-.
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r 39 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYL 39 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEec
Confidence 356676665 45788888887788988776543
No 343
>PRK09072 short chain dehydrogenase; Provisional
Probab=66.99 E-value=44 Score=26.86 Aligned_cols=33 Identities=36% Similarity=0.406 Sum_probs=27.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+..+|+.++|-.|.+++......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 467888889999999999988899998777654
No 344
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=66.96 E-value=47 Score=27.72 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=39.6
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC-CHHHHHHHHHcCCEEEE
Q 028372 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIIL 120 (210)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~-~~~~~~~~~~~Ga~v~~ 120 (210)
+.+.++...+|...+|..|.+++..|+.+|.++++...... ...+.+.++.+|++-+.
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~ 200 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVL 200 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEE
Confidence 34566656566556799999999999999999877766432 12455555667775443
No 345
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=66.66 E-value=47 Score=29.75 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=45.2
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCc-EEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEc-C
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLL-R 148 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~-~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 148 (210)
.|+..++ ++ .|+-..++.+=-+ -+|++.+-+-..-++.++.+|++++.++.+.+=-+-....+.+.+..+..+|+ +
T Consensus 157 ~IiiT~G-~q-~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P 234 (459)
T COG1167 157 QIVITSG-AQ-QALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTP 234 (459)
T ss_pred eEEEeCC-HH-HHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECC
Confidence 4554444 34 3555666665433 45555555556777888999999999886421111111122222224455555 4
Q ss_pred CCCCChh
Q 028372 149 QFENPAN 155 (210)
Q Consensus 149 ~~~n~~~ 155 (210)
.+.||..
T Consensus 235 ~~qNPtG 241 (459)
T COG1167 235 TFQNPTG 241 (459)
T ss_pred CCCCCCC
Confidence 5567764
No 346
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=66.63 E-value=48 Score=26.04 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=35.9
Q ss_pred EEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEECC
Q 028372 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (210)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~~ 123 (210)
+|+..+|.-|.++|......|.+++++...... ....+.++..+.++..+..
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 55 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQF 55 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEc
Confidence 677888899999999988899997766543322 2234455566777766554
No 347
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=66.40 E-value=50 Score=27.27 Aligned_cols=50 Identities=26% Similarity=0.399 Sum_probs=35.7
Q ss_pred CCCCC-eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 65 ITPGK-TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 65 ~~~~~-~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
+.++. +.+|...+|..|.+++..|+.+|.+.++.+.. ..+++.++.+|++
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~ 192 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGAS 192 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCc
Confidence 55666 66666667999999999999999987665443 2344555667764
No 348
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=66.38 E-value=98 Score=27.69 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCCCEEEEccCc-hhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 164 GPEIWQDSGGKVDAFISGIGT-GGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 164 ~~Ei~~q~~~~~d~vv~pvG~-Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
-.+|.+.+ +-|-.+|+...+ +.+++.+..++....+++++.||++
T Consensus 106 ~adiA~~l-~~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~ 151 (451)
T PRK01077 106 TADIAKLL-GAPVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVIL 151 (451)
T ss_pred HHHHHHHh-CCCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 35788888 345555555544 6678888888888777888888864
No 349
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=66.38 E-value=87 Score=27.10 Aligned_cols=82 Identities=10% Similarity=0.030 Sum_probs=44.0
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEeeCCCchHHHHHHHHHH-cCCcEEEEEcCCCCHHHHHHHHHcCC
Q 028372 40 TMEPCSSVKDRIAYSMIKDAEDKGL--ITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGA 116 (210)
Q Consensus 40 ~~~ptGS~K~R~a~~~~~~a~~~g~--~~~~~~~vv~~ssGN~g~alA~~a~~-~g~~~~vvvp~~~~~~~~~~~~~~Ga 116 (210)
+..+.|....|-+..-.. ...+. +.++...++..+++.+|..++..+-. ..=--+|+++.-.-+.-...++.+|+
T Consensus 65 Y~~~~G~~~lR~aia~~~--~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~ 142 (396)
T PRK09257 65 YLPIEGLAAYRQAVQELL--FGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGL 142 (396)
T ss_pred cCCCCCCHHHHHHHHHHh--cCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCC
Confidence 434467777775444332 22221 23321123666777887777753322 11112455555444444667788999
Q ss_pred EEEEECC
Q 028372 117 EIILADS 123 (210)
Q Consensus 117 ~v~~v~~ 123 (210)
+++.++-
T Consensus 143 ~~v~v~~ 149 (396)
T PRK09257 143 EVKTYPY 149 (396)
T ss_pred cEEEEec
Confidence 9998863
No 350
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=66.25 E-value=55 Score=27.37 Aligned_cols=55 Identities=25% Similarity=0.239 Sum_probs=36.3
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v 118 (210)
..+.+.+++..++. .+|..|.++...|+.+|...++.+ ..+..+.+.++.+|++-
T Consensus 161 ~~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (347)
T cd05278 161 ELAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATD 215 (347)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcE
Confidence 34456677676665 468888898889999997444444 22355666667777643
No 351
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=66.23 E-value=52 Score=26.98 Aligned_cols=94 Identities=6% Similarity=0.030 Sum_probs=46.2
Q ss_pred HHHHHHHHHc--CCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeE---EcCCCCCChhH
Q 028372 82 VGLAFIAAAR--GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGY---LLRQFENPANP 156 (210)
Q Consensus 82 ~alA~~a~~~--g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~n~~~~ 156 (210)
..+.++++.+ |.+..-+...+.-..-.+.....|-.|.+++... ......++.+.++. +.- +.++|.++.-
T Consensus 70 ~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~--~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e- 145 (243)
T PRK03692 70 ISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKP--EVLAQTEAKLRTQW-NVNIVGSQDGYFTPEQ- 145 (243)
T ss_pred HHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCCH--HHHHHHHHHHHHHh-CCEEEEEeCCCCCHHH-
Confidence 4556666655 3331111111112333444556788899998652 22333344444443 221 2344443221
Q ss_pred HHHHHhHHHHHHHhhC-CCCCEEEEccCchh
Q 028372 157 KIHYETTGPEIWQDSG-GKVDAFISGIGTGG 186 (210)
Q Consensus 157 ~~g~~t~~~Ei~~q~~-~~~d~vv~pvG~Gg 186 (210)
. .+|.+++. .++|.|+|+.|+-=
T Consensus 146 ---~----~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 146 ---R----QALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred ---H----HHHHHHHHhcCCCEEEEECCCcH
Confidence 1 23444443 35899999999743
No 352
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=66.19 E-value=27 Score=26.52 Aligned_cols=50 Identities=30% Similarity=0.370 Sum_probs=39.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
..++...+||-|.+.+.++..+|.+++++ + ..+.+.+..+..++..+.++
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~--d-~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVP--D-ERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEE--E-SSHHHHHHHHHTTTEESEET
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEec--c-CCHHHHHhhhcccCceEEEc
Confidence 45777889999999999999999987665 2 34667778888999888885
No 353
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=66.09 E-value=64 Score=26.52 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=34.1
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
..+|...+|..|.+++..|+.+|.+++++.+ +..+++.++.+|++-+
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 5566666799999999999999999655544 3456666677787443
No 354
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=65.99 E-value=69 Score=25.79 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=39.1
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
+.+.++++...++...+|..|.+++..++.+|.+++++.+. ..+.+.++.+|++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 167 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVP 167 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 45667777676776778899999999999999986666443 3455555667764
No 355
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=65.59 E-value=59 Score=28.15 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=35.4
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
.++..++|..|..++..+-..+-.-.|++|...-......+...|++++.++.
T Consensus 50 ~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 50 HAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred eEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 35556777776666655432222346777776666667777889999999875
No 356
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=65.53 E-value=45 Score=26.91 Aligned_cols=47 Identities=28% Similarity=0.378 Sum_probs=32.9
Q ss_pred eEEEee-CCC---chHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCC
Q 028372 70 TTLIEV-TSG---NTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGA 116 (210)
Q Consensus 70 ~~vv~~-ssG---N~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga 116 (210)
+.++++ |+| .+-.|||.+|++-|=+.+.++|+... ..-.+.|..+|.
T Consensus 43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 445555 444 36789999999999999999998654 344455555554
No 357
>PRK07904 short chain dehydrogenase; Provisional
Probab=65.46 E-value=64 Score=25.94 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=34.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHc-CCcEEEEEcCCCC--HHHHHHHHHcCC-EEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCS--MERRIVLRALGA-EIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~-g~~~~vvvp~~~~--~~~~~~~~~~Ga-~v~~v~ 122 (210)
+..+|+..+|-.|.++|...... |.+++++.....+ ....+.++..|. +++.+.
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~ 66 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVID 66 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEE
Confidence 36788888888888888886666 4888887654332 222344555553 454443
No 358
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=65.31 E-value=90 Score=26.92 Aligned_cols=114 Identities=15% Similarity=0.058 Sum_probs=55.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCC---CCCCCeEEEeeCCCchHHHHHHHHH-HcCCcEEEEEcCCCCHHHHHHHHHcC
Q 028372 40 TMEPCSSVKDRIAYSMIKDAEDKGL---ITPGKTTLIEVTSGNTGVGLAFIAA-ARGYNLIIVMPSTCSMERRIVLRALG 115 (210)
Q Consensus 40 ~~~ptGS~K~R~a~~~~~~a~~~g~---~~~~~~~vv~~ssGN~g~alA~~a~-~~g~~~~vvvp~~~~~~~~~~~~~~G 115 (210)
+..+.|.-..|-+..-..... .|. +.+. ..|+..+++..+..++..+- .-|=...+++|.-.-..-....+..|
T Consensus 60 Y~~~~G~~~lr~aia~~~~~~-~~~~~~~~~~-~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g 137 (393)
T TIGR03538 60 YPTTKGLPELRQAIARWLERR-FDLPTGVDPE-RHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAG 137 (393)
T ss_pred CCCCCCCHHHHHHHHHHHHHh-hCCcccCCCC-ceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcC
Confidence 334457666665443332221 121 2321 24666677777766555432 22433456676533333344567899
Q ss_pred CEEEEECCC--CCHHHHHHHHHHHHHhCCCeEEcCCCCCChh
Q 028372 116 AEIILADSA--LRFEEILEKGEEILKKTPDGYLLRQFENPAN 155 (210)
Q Consensus 116 a~v~~v~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~ 155 (210)
++++.++-+ .++.-..+...+...+....+|+....||..
T Consensus 138 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG 179 (393)
T TIGR03538 138 AEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTG 179 (393)
T ss_pred CeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcC
Confidence 999988742 1121111111111122346777754456543
No 359
>PRK09291 short chain dehydrogenase; Provisional
Probab=65.02 E-value=28 Score=27.75 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=28.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
++.+|+..+|..|.+++......|.+++++...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367899999999999999988999998887664
No 360
>PRK05855 short chain dehydrogenase; Validated
Probab=64.97 E-value=76 Score=28.60 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=31.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
.+.+|+..+|--|.++|..-...|.+++++...... ....+.++..|.++..+.
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 370 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYR 370 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 456777777888888888877788886665432211 111233444565554443
No 361
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=64.93 E-value=91 Score=26.79 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=37.7
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
+.+.++++...+|. ..|..|.+++..++.+|.+-++++.. .+.+++.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVDI--NKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCc
Confidence 44556777665555 67999999999999999943344432 45667777788874
No 362
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=64.87 E-value=34 Score=30.79 Aligned_cols=54 Identities=13% Similarity=-0.046 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCC
Q 028372 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (210)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~ 102 (210)
-+++.+.+..+.+.-......++|+....||-|..+|.....+|-+++.+.+.+
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 467777777765433222233678889999999999999999999999777644
No 363
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=64.81 E-value=73 Score=25.67 Aligned_cols=51 Identities=33% Similarity=0.434 Sum_probs=36.9
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCC
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA 116 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga 116 (210)
.+.+.+++..+|...+|..|.+++..++..|.+++++.+.. +.+.++.+|+
T Consensus 139 ~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~ 189 (309)
T cd05289 139 LGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGA 189 (309)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCC
Confidence 34466676666666679999999999999999977766433 4455566775
No 364
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.71 E-value=58 Score=25.54 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=36.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~--~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+..+|..|.++|......|.+++++...+... ...+.++..+.++..+..
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKA 62 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4678888899999999998888899887763333211 223334445666665554
No 365
>PRK07825 short chain dehydrogenase; Provisional
Probab=64.67 E-value=74 Score=25.67 Aligned_cols=32 Identities=25% Similarity=0.105 Sum_probs=26.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+..+|.-|.++|......|.+++++..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r 37 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDL 37 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 46788999999999999888888988766543
No 366
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=64.63 E-value=41 Score=25.75 Aligned_cols=71 Identities=21% Similarity=0.188 Sum_probs=42.3
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCC-----CCHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST-----CSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKK 140 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~-----~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 140 (210)
+-+|+...|..|..+|..-...+-.-++++..+ .....++.++..|++|.....+ .+.++..+...++.++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~ 78 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQR 78 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhc
Confidence 347778889999999988555555444444433 2235678889999999987653 2234444444444443
No 367
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=64.54 E-value=57 Score=26.05 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=36.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
++.+|+..+|.-|.+++..-...|.+++++.+.... ......++..|.++..+.
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~ 66 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR 66 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 477888888999999999888889988776543221 122334455676665544
No 368
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=64.49 E-value=61 Score=27.04 Aligned_cols=52 Identities=27% Similarity=0.256 Sum_probs=35.9
Q ss_pred CCCCCCeEEEeeCCCchHHHHHHHHHHcC-CcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 64 LITPGKTTLIEVTSGNTGVGLAFIAAARG-YNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 64 ~~~~~~~~vv~~ssGN~g~alA~~a~~~g-~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
.+.++...+|.. +|..|.+++..|+.+| .+++++.+ ++.+.+.++.+|++-+
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~ 216 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHV 216 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEE
Confidence 345565666666 5669999999999999 77766543 3456667777887433
No 369
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=64.40 E-value=55 Score=28.43 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=36.5
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~ 124 (210)
+.++..++|..|..++..+-..+=.-.|++|..+-......+...|++++.++.+
T Consensus 47 ~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4567677777765555544322223456777766666777778899999999854
No 370
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=64.34 E-value=1e+02 Score=27.19 Aligned_cols=110 Identities=9% Similarity=0.030 Sum_probs=64.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHc--CCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEc
Q 028372 70 TTLIEVTSGNTGVGLAFIAAAR--GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLL 147 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~--g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (210)
+..|-.|+|+-|.+..-+.+.. .++++.+.-......-.++.+.++.+.+.+..+ .. +.++.+...+
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~---~~----~~~l~~~l~~---- 71 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE---EA----AKELKEALAA---- 71 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH---HH----HHHHHHhhcc----
Confidence 4456678899998877666655 677777776665666777889999998888743 11 1222111100
Q ss_pred CCCCCChhHHHHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHh
Q 028372 148 RQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKE 197 (210)
Q Consensus 148 ~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~ 197 (210)
.+... ..|.. -..|+.+. +++|.|+.++++...+.-+..+++.
T Consensus 72 ---~~~~v-~~G~~-~~~~l~~~--~~vD~Vv~Ai~G~aGl~ptl~Ai~a 114 (385)
T PRK05447 72 ---AGIEV-LAGEE-GLCELAAL--PEADVVVAAIVGAAGLLPTLAAIRA 114 (385)
T ss_pred ---CCceE-EEChh-HHHHHhcC--CCCCEEEEeCcCcccHHHHHHHHHC
Confidence 00000 11211 11244332 4589999998886555666666654
No 371
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=64.32 E-value=53 Score=25.94 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=36.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHH-HHHHHHcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMER-RIVLRALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~-~~~~~~~Ga~v~~v~~ 123 (210)
+.+|+..+|-.|.+++..-...|.+++++........+ ...++..+.++..+..
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 57 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVA 57 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 56888889999999999988889988877654322222 2233445667665543
No 372
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=64.32 E-value=50 Score=27.33 Aligned_cols=38 Identities=32% Similarity=0.393 Sum_probs=30.0
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVM 99 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvv 99 (210)
...++++...+|...+|..|.+++..|+.+|.+++++.
T Consensus 157 ~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~ 194 (325)
T cd08264 157 TAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS 194 (325)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 35566776767766679999999999999999876654
No 373
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=64.26 E-value=11 Score=34.06 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.9
Q ss_pred CCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 76 TSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 76 ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
|||-+|.++|.++..+|-+++++..+
T Consensus 280 SSGkmG~alA~aa~~~GA~VtlI~Gp 305 (475)
T PRK13982 280 SSGKQGFAIAAAAAAAGAEVTLISGP 305 (475)
T ss_pred CchHHHHHHHHHHHHCCCcEEEEeCC
Confidence 78999999999999999999999844
No 374
>CHL00194 ycf39 Ycf39; Provisional
Probab=64.22 E-value=31 Score=28.90 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=27.8
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+.+|+..+|..|..++......|.++++++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 46788999999999999988889999988864
No 375
>PLN02583 cinnamoyl-CoA reductase
Probab=64.12 E-value=56 Score=27.05 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=29.2
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+++.+|+..+|..|.+++......|.+++++.+.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3477888999999999999999999999988764
No 376
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.11 E-value=76 Score=25.64 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=21.9
Q ss_pred CeEEEeeC--CCchHHHHHHHHHHcCCcEEEEE
Q 028372 69 KTTLIEVT--SGNTGVGLAFIAAARGYNLIIVM 99 (210)
Q Consensus 69 ~~~vv~~s--sGN~g~alA~~a~~~g~~~~vvv 99 (210)
+..+|+.. ++--|.++|......|.++++.-
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~ 39 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGAELAFTY 39 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEc
Confidence 46677774 45567788887888898877653
No 377
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.01 E-value=79 Score=26.53 Aligned_cols=57 Identities=26% Similarity=0.294 Sum_probs=38.0
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
.+.+.+++++..+|. .+|..|.+++..|+.+|.+.++++.. +..+...++.+|++-+
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 211 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHT 211 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEE
Confidence 356677888777775 46778999999999999984333322 2445555566676543
No 378
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=63.99 E-value=40 Score=30.15 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHHc-CCcEEEEEcCCC--CHHHHHHHHHcCCEEEEEC
Q 028372 78 GNTGVGLAFIAAAR-GYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (210)
Q Consensus 78 GN~g~alA~~a~~~-g~~~~vvvp~~~--~~~~~~~~~~~Ga~v~~v~ 122 (210)
+|.+.+++.+++.+ |++++++.|+.. +....+.++..|.++..++
T Consensus 253 ~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 253 GRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred ChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 69999999996665 999999999864 3444556666787776654
No 379
>PRK06101 short chain dehydrogenase; Provisional
Probab=63.89 E-value=64 Score=25.55 Aligned_cols=51 Identities=22% Similarity=0.162 Sum_probs=34.3
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCC--EEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA--EIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga--~v~~v~~ 123 (210)
..+|+..+|.-|.++|..-...|.+++++... ..+.+.+...+. ..+.++-
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~D~ 55 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFTLAFDV 55 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeEEEeeC
Confidence 56888999999999998888889997776543 334444444343 3444443
No 380
>PRK06398 aldose dehydrogenase; Validated
Probab=63.85 E-value=76 Score=25.51 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=26.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+..+|+..+|--|.++|......|.+++++...
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 477888888889999998888889888776543
No 381
>PRK09186 flagellin modification protein A; Provisional
Probab=63.80 E-value=72 Score=25.27 Aligned_cols=33 Identities=30% Similarity=0.235 Sum_probs=27.1
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+++.+|+..+|.-|.++|......|.+++++..
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r 36 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADI 36 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEec
Confidence 347788899999999999998888988777643
No 382
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=63.76 E-value=97 Score=26.71 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=27.3
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
.|..-.+|++|.|||......|.++++...+
T Consensus 3 kI~ViGaGswGTALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred eEEEEcCChHHHHHHHHHHhcCCeeEEEecC
Confidence 4667789999999999999999999998765
No 383
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=63.74 E-value=84 Score=25.99 Aligned_cols=81 Identities=11% Similarity=0.143 Sum_probs=45.8
Q ss_pred EEEEeCCCCCCC-chhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC-----CHHH
Q 028372 34 IAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-----SMER 107 (210)
Q Consensus 34 i~~K~E~~~ptG-S~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~-----~~~~ 107 (210)
|.+..|...-.| .|=.|. ..+.....++|. ...+++-..++.. .-.-+..|+++..+ |+.. ....
T Consensus 2 i~ir~Da~~~iG~GHv~Rc-l~LA~~l~~~g~----~v~f~~~~~~~~~---~~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRC-LTLARALHAQGA----EVAFACKPLPGDL---IDLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHH-HHHHHHHHHCCC----EEEEEeCCCCHHH---HHHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 667777654455 555554 333344445554 2334444433332 22446789987665 4432 1235
Q ss_pred HHHHHHcCCEEEEECC
Q 028372 108 RIVLRALGAEIILADS 123 (210)
Q Consensus 108 ~~~~~~~Ga~v~~v~~ 123 (210)
.+.++..+.++++++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 5677778889999996
No 384
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=63.73 E-value=44 Score=28.83 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=33.7
Q ss_pred CchHHHHHHH-HHHcCCcEEEEEcCCC--CHHHHHHHHHcCCEEEEEC
Q 028372 78 GNTGVGLAFI-AAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (210)
Q Consensus 78 GN~g~alA~~-a~~~g~~~~vvvp~~~--~~~~~~~~~~~Ga~v~~v~ 122 (210)
+|.+.+++.. ++.+|++++++.|+.. +....+.++..|.++..+.
T Consensus 171 ~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 171 GRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 6889999976 6677999999999864 4455556666677776654
No 385
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=63.63 E-value=88 Score=26.19 Aligned_cols=51 Identities=27% Similarity=0.405 Sum_probs=36.7
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCC
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA 116 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga 116 (210)
...+.++...+|.+ .|..|.++...|+.+|++++++.+. ..+.+.++.+|+
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~---~~~~~~~~~~g~ 210 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDID---DDKLELARELGA 210 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHhCC
Confidence 34456666666666 7899999999999999987666443 445555666777
No 386
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=63.60 E-value=76 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=27.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+..+|+..+|..|.++|......|.+++++...
T Consensus 10 k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~ 42 (266)
T PRK06171 10 KIIIVTGGSSGIGLAIVKELLANGANVVNADIH 42 (266)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 477888889999999999988889888776543
No 387
>PRK07985 oxidoreductase; Provisional
Probab=63.43 E-value=65 Score=26.64 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=36.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC---HHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS---MERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~---~~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+..+|.-|.++|......|.+++++...... ....+.++..|.+++.+..
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPG 107 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEc
Confidence 477899999999999999988899998775432211 1222234456777655443
No 388
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=63.42 E-value=23 Score=28.34 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=24.2
Q ss_pred eEEEeeC--CCchHHHHHHHHHHcCCcEEEEEcCC
Q 028372 70 TTLIEVT--SGNTGVGLAFIAAARGYNLIIVMPST 102 (210)
Q Consensus 70 ~~vv~~s--sGN~g~alA~~a~~~g~~~~vvvp~~ 102 (210)
++++-.| +|-+-.+||.+|++.|+++.+++...
T Consensus 43 TTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~ 77 (207)
T PF11814_consen 43 TTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTD 77 (207)
T ss_pred ceecccCCCCCcChHHHHHHHHHcCCceEEEECCC
Confidence 4455444 35566778888888999999999864
No 389
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.34 E-value=81 Score=25.71 Aligned_cols=71 Identities=24% Similarity=0.232 Sum_probs=39.6
Q ss_pred CeEEEeeCCC--chHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHH-HHcCCEE-EEECCCCCHHHHHHHHHHHHHh
Q 028372 69 KTTLIEVTSG--NTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEI-ILADSALRFEEILEKGEEILKK 140 (210)
Q Consensus 69 ~~~vv~~ssG--N~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~-~~~Ga~v-~~v~~~~~~~~~~~~a~~~~~~ 140 (210)
+..+|+..++ .-|.++|......|.+++++-.......+.+.+ +..|..+ +.+|-. +.++..+..++..++
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~-d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVE-DIASVDAVFEALEKK 82 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCC-CHHHHHHHHHHHHHH
Confidence 4667777775 688888888888999987764332222223333 3446432 334432 244444444554443
No 390
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=63.24 E-value=65 Score=27.61 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=38.8
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v 118 (210)
+...+.++...+| ...|..|.+++..++.+|.+.++++. ....+.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCeE
Confidence 3445566766666 56789999999999999985444443 3567777888889854
No 391
>PRK06354 pyruvate kinase; Provisional
Probab=63.14 E-value=1.3e+02 Score=28.09 Aligned_cols=120 Identities=12% Similarity=0.065 Sum_probs=69.0
Q ss_pred HHHHHHHHcCCcEEEEE-----------cCCCCHHHHHHHHHcCCEEEEECCCC---C-HHHHHHHHHHHHHhCCCeE-E
Q 028372 83 GLAFIAAARGYNLIIVM-----------PSTCSMERRIVLRALGAEIILADSAL---R-FEEILEKGEEILKKTPDGY-L 146 (210)
Q Consensus 83 alA~~a~~~g~~~~vvv-----------p~~~~~~~~~~~~~~Ga~v~~v~~~~---~-~~~~~~~a~~~~~~~~~~~-~ 146 (210)
-+...|+..|.++++-. |..+........-..|++-+...++. . -.++.+...+.+++.+..+ |
T Consensus 268 ~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 347 (590)
T PRK06354 268 RLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGDYPVEAVQTMATIAVRIEKDLPY 347 (590)
T ss_pred HHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCCCHHHHHHHHHHHHHHHHhccch
Confidence 35667899999988753 22333344444455688888776531 1 2355555555544332211 1
Q ss_pred c---CCC-CCChhHHHHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 147 L---RQF-ENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 147 ~---~~~-~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
. .+. .+........+..+.++.+++ +.+.|++..-||.++--+ ....|.+.|++++
T Consensus 348 ~~~~~~~~~~~~~~~~~ia~aa~~~a~~~--~a~~Iv~~T~sG~ta~~v----sk~Rp~~pI~a~t 407 (590)
T PRK06354 348 RDILSKRPEFTTTITNAISQAVSHIALQL--DAAAIVTLTKSGATARNV----SKYRPKTPILAVT 407 (590)
T ss_pred hhhhhhccccCCCHHHHHHHHHHHHHhhc--CCCEEEEECCChHHHHHH----HhhCCCCCEEEEC
Confidence 0 010 001111223344556777776 467899999999995444 4568999999876
No 392
>PRK07550 hypothetical protein; Provisional
Probab=63.03 E-value=99 Score=26.57 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=42.4
Q ss_pred CCchhhHHHHHHHHHHHHcC-CCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 44 CSSVKDRIAYSMIKDAEDKG-LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g-~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
.|.-..|.+..-.... ..| .+.+ ..|+..++++.+..++..+- .+-.-.|+++.-.-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~~~-~~g~~~~~--~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHYSR-LYGAAISP--EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCc--ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 4666666544432221 223 2232 34666666677766555443 33344566665443444456678999999988
Q ss_pred C
Q 028372 123 S 123 (210)
Q Consensus 123 ~ 123 (210)
.
T Consensus 143 ~ 143 (386)
T PRK07550 143 C 143 (386)
T ss_pred c
Confidence 5
No 393
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=62.92 E-value=99 Score=28.41 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=30.3
Q ss_pred EEEeeCCCchHHHHHHHHH----Hc--CCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 71 TLIEVTSGNTGVGLAFIAA----AR--GYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~----~~--g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
.|+...++..|..++..+- .+ |=++.+..|.-..-...-.+..+|++++.++.
T Consensus 157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~ 215 (521)
T TIGR03801 157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKA 215 (521)
T ss_pred eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeec
Confidence 6888888888887776541 22 33333333333333333344556888887764
No 394
>PRK06953 short chain dehydrogenase; Provisional
Probab=62.92 E-value=71 Score=24.88 Aligned_cols=52 Identities=31% Similarity=0.309 Sum_probs=37.2
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~ 124 (210)
+.+|+..+|.-|.++|..-...|.+++++... ..+.+.++..+.+.+.++-.
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~~ 54 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDVA 54 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecCC
Confidence 56788889999999998877889988776543 23444555567776666643
No 395
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=62.56 E-value=44 Score=28.32 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=40.6
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCH--HHHHH-HHHcCCEEEEEC
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIV-LRALGAEIILAD 122 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~--~~~~~-~~~~Ga~v~~v~ 122 (210)
+.|.++ |.+..+.+-.+|.+.+++..++.+|++++++.|+...+ ...+. .+..|.++...+
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 456554 33444444457999999999999999999999986432 22222 455677776554
No 396
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=62.51 E-value=74 Score=24.93 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=23.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEE
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIV 98 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vv 98 (210)
++.+|+..+|.-|.+++......|..+++.
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~~ 36 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGLH 36 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 477888889999999999888888755443
No 397
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.46 E-value=73 Score=25.14 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=34.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
++.+|+.++|.-|.++|..-...|.++++....... ........++.++..+.
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~-~~~~~~~~~~~~~~~~~ 58 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSED-AAEALADELGDRAIALQ 58 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHH-HHHHHHHHhCCceEEEE
Confidence 467899999999999999888889988765543321 11222233455555443
No 398
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=62.12 E-value=90 Score=25.80 Aligned_cols=56 Identities=32% Similarity=0.434 Sum_probs=38.3
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v 121 (210)
.+.+.++...++. .+|..|.+++..|+.+|.+++++.+ +..+.+.++.+|++-+..
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~ 215 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLN 215 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEc
Confidence 4456667666665 5678899999999999998555433 355666667778754433
No 399
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.83 E-value=59 Score=26.07 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=42.2
Q ss_pred CeEEEeeCC--CchHHHHHHHHHHcCCcEEEEEc----CCC----CH----HHHHHHHHcCCEEEEECCCC-CHHHHHHH
Q 028372 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMP----STC----SM----ERRIVLRALGAEIILADSAL-RFEEILEK 133 (210)
Q Consensus 69 ~~~vv~~ss--GN~g~alA~~a~~~g~~~~vvvp----~~~----~~----~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~ 133 (210)
+..+|+..+ +.-|.++|......|.++++... ... .. ...+.++..|.+++.+..+- +.++..+.
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~~ 86 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKEL 86 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 466777766 47899999998899998777531 110 11 22344567788887665432 23333444
Q ss_pred HHHHHHh
Q 028372 134 GEEILKK 140 (210)
Q Consensus 134 a~~~~~~ 140 (210)
..+..++
T Consensus 87 ~~~~~~~ 93 (256)
T PRK12859 87 LNKVTEQ 93 (256)
T ss_pred HHHHHHH
Confidence 4444443
No 400
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=61.66 E-value=70 Score=26.80 Aligned_cols=52 Identities=27% Similarity=0.405 Sum_probs=35.9
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcC-CcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARG-YNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g-~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
...++++...+|. ..|..|.+++..++.+| .++++ +. ....+...++.+|++
T Consensus 161 ~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~--~~~~~~~~~~~~g~~ 213 (345)
T cd08286 161 NGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-VD--LDDNRLEVAKKLGAT 213 (345)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-Ec--CCHHHHHHHHHhCCC
Confidence 3345666676775 46999999999999999 55544 32 245666677778874
No 401
>PRK08177 short chain dehydrogenase; Provisional
Probab=61.61 E-value=76 Score=24.78 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=27.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC 103 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~ 103 (210)
..+|+..+|.-|.++|..-...|.+++++.....
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~ 36 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQ 36 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 5688888999999999988888998887765433
No 402
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=61.51 E-value=73 Score=31.75 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=28.5
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
+.|+.-.+|..|.+.|+..++.|++++||=..
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 56888999999999999999999999998543
No 403
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=61.51 E-value=46 Score=29.84 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=39.2
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC--------------C----HHHHHHHHHcCCEEEE
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--------------S----MERRIVLRALGAEIIL 120 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~--------------~----~~~~~~~~~~Ga~v~~ 120 (210)
+.|+...+|..|.+.|...++.|.++++|-.... + ....+.++.+|.+++.
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 5688889999999999999999999999864321 1 1235667888988764
No 404
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=61.46 E-value=39 Score=30.28 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=39.2
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC---------C---------HHHHHHHHHcCCEEEE
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC---------S---------MERRIVLRALGAEIIL 120 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~---------~---------~~~~~~~~~~Ga~v~~ 120 (210)
+.|+...+|..|.+.|..+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 5688899999999999999999999888743321 1 1345677888988764
No 405
>PRK08251 short chain dehydrogenase; Provisional
Probab=61.33 E-value=72 Score=25.17 Aligned_cols=71 Identities=25% Similarity=0.300 Sum_probs=40.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCH-HHHHHHHHc--CCEEEEECCCC-CHHHHHHHHHHHHH
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRAL--GAEIILADSAL-RFEEILEKGEEILK 139 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~-~~~~~~~~~--Ga~v~~v~~~~-~~~~~~~~a~~~~~ 139 (210)
++.+|+.++|..|.++|..-...|.++++........ .....++.. +.+++.+..+- +.++..+..++..+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRD 77 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3678889999999999998888898877665432111 111222222 66776655432 23333344444433
No 406
>PLN02527 aspartate carbamoyltransferase
Probab=61.30 E-value=79 Score=26.84 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=33.0
Q ss_pred CchHHHHHHHHHHc-CCcEEEEEcCCC--CHHHHHHHHHcCCEEEEEC
Q 028372 78 GNTGVGLAFIAAAR-GYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (210)
Q Consensus 78 GN~g~alA~~a~~~-g~~~~vvvp~~~--~~~~~~~~~~~Ga~v~~v~ 122 (210)
+|.+.+++.+++.+ |++++++.|+.. +....+.++..|.++...+
T Consensus 163 ~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 163 GRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 46899999998877 999999999864 4444555555677666554
No 407
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.29 E-value=50 Score=26.50 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=53.6
Q ss_pred CCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCH---HHHHHHHHcCC-EEEEECCCCCHHHHHHHHHHHHH
Q 028372 64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM---ERRIVLRALGA-EIILADSALRFEEILEKGEEILK 139 (210)
Q Consensus 64 ~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~---~~~~~~~~~Ga-~v~~v~~~~~~~~~~~~a~~~~~ 139 (210)
.++++ ..|.+-.+| .|...|..|+.-| .|+.-+..+. .=.+.++.+|- +|.++-++...
T Consensus 69 ~~~~g-~~VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~------------ 131 (209)
T COG2518 69 ELKPG-DRVLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK------------ 131 (209)
T ss_pred CCCCC-CeEEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc------------
Confidence 35566 446666665 4577788888877 4444343322 22334677787 56655543210
Q ss_pred hCCCeEEcCCCCCChhHHHHHHhHHHHHHHhhCCCCCEEEEccCch
Q 028372 140 KTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTG 185 (210)
Q Consensus 140 ~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~G 185 (210)
+|--..|||-... -++..++=.-+++|+++ --..|+|+|++
T Consensus 132 ---G~~~~aPyD~I~V-taaa~~vP~~Ll~QL~~-gGrlv~PvG~~ 172 (209)
T COG2518 132 ---GWPEEAPYDRIIV-TAAAPEVPEALLDQLKP-GGRLVIPVGSG 172 (209)
T ss_pred ---CCCCCCCcCEEEE-eeccCCCCHHHHHhccc-CCEEEEEEccC
Confidence 2222234443332 22333444567899842 24688999943
No 408
>PRK06198 short chain dehydrogenase; Provisional
Probab=61.28 E-value=82 Score=25.06 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=36.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~~ 123 (210)
++.+|+..+|.-|..+|......|.+.++++..+.. ......++..+.++..+..
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 63 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQA 63 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 467888888999999999988899984444443321 1223355667888765543
No 409
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=61.26 E-value=1.3e+02 Score=27.36 Aligned_cols=119 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHcCCcEEE-----------EEcCCCCHHHHHHHHHcCCEEEEECCC----CCHHHHHHHHHHHHHhCCCeEEcC
Q 028372 84 LAFIAAARGYNLII-----------VMPSTCSMERRIVLRALGAEIILADSA----LRFEEILEKGEEILKKTPDGYLLR 148 (210)
Q Consensus 84 lA~~a~~~g~~~~v-----------vvp~~~~~~~~~~~~~~Ga~v~~v~~~----~~~~~~~~~a~~~~~~~~~~~~~~ 148 (210)
+...|+..|.++.+ -.|..+....+...-..|++-+...++ ..-.++.+...+.+++-+..++..
T Consensus 264 ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (480)
T cd00288 264 LIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSHR 343 (480)
T ss_pred HHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchh
Q ss_pred --------CCCCChhHHHHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 149 --------QFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 149 --------~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
...............+.++.+++ +.++||++.-+|.+ ++.+....|++.|++++
T Consensus 344 ~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l--~akaIVv~T~SG~T----A~~lS~~RP~~pIiavT 405 (480)
T cd00288 344 VLFNEMRRLTPRPTSTTEAVAMSAVRAAFEL--GAKAIVVLTTSGRT----ARLVSKYRPNAPIIAVT 405 (480)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHHhc--CCCEEEEECCCcHH----HHHHHhhCCCCCEEEEc
No 410
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=60.98 E-value=70 Score=24.19 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=39.3
Q ss_pred eEEEeeCC--CchHHHHHHHHHHcCCcEEEEE-----------cCC-CCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHH
Q 028372 70 TTLIEVTS--GNTGVGLAFIAAARGYNLIIVM-----------PST-CSMERRIVLRALGAEIILADSALRFEEILEKGE 135 (210)
Q Consensus 70 ~~vv~~ss--GN~g~alA~~a~~~g~~~~vvv-----------p~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~ 135 (210)
..++..++ ||...+++-+....++|+++++ +.. ........++.++-....+...++. ..+++|.
T Consensus 60 ~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i~~~~i~~~e~~-~~i~~A~ 138 (157)
T TIGR03845 60 PAILMQSSGLGNSINALASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGIPYTIPREPEEA-KLIEKAI 138 (157)
T ss_pred cEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCCCeEEeCCHHHH-HHHHHHH
Confidence 34555555 4655555555558899999999 321 1112222234444444444433344 5556666
Q ss_pred HHHHhCCCeEE
Q 028372 136 EILKKTPDGYL 146 (210)
Q Consensus 136 ~~~~~~~~~~~ 146 (210)
+.+.+.++.++
T Consensus 139 ~~a~~~~gPv~ 149 (157)
T TIGR03845 139 SDAYENSRPVA 149 (157)
T ss_pred HHHHhCCCCEE
Confidence 55554434443
No 411
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=60.94 E-value=17 Score=31.67 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=28.4
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcCC
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~ 102 (210)
+|-.-.+|..|+-++.+|+.+|+++.++-|..
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~ 34 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDA 34 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCC
Confidence 46667899999999999999999999998764
No 412
>PRK14031 glutamate dehydrogenase; Provisional
Probab=60.93 E-value=44 Score=30.01 Aligned_cols=53 Identities=9% Similarity=-0.078 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 48 KDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
=-|+..+.+..+.+..-.....++|+.-..||-|..+|.....+|-+++++.+
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 207 TGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred cHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 34677777776654332334447788899999999999999999999999887
No 413
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=60.69 E-value=91 Score=25.38 Aligned_cols=55 Identities=31% Similarity=0.429 Sum_probs=39.3
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
+.+.+.++...++....|..|.+++..++.+|.++++..++ .+.+.++.+|++-+
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~----~~~~~~~~~g~~~~ 192 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS----EKAAFARSLGADPI 192 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech----HHHHHHHHcCCCEE
Confidence 45666777676776668999999999999999997766542 44555566776433
No 414
>PRK07069 short chain dehydrogenase; Validated
Probab=60.63 E-value=82 Score=24.83 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=23.8
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
.+|+..+|.-|.++|..-...|.+++++...
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4677888889999998877778877666543
No 415
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.51 E-value=88 Score=25.19 Aligned_cols=42 Identities=10% Similarity=-0.020 Sum_probs=29.1
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCC-CCEEEEE
Q 028372 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNP-DIKVVLR 207 (210)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~-~~~vigv 207 (210)
...+++++- ++||+|||. +..++.|+..++++.+. ++.|+|+
T Consensus 173 ~~~~~l~~~-~~~~ai~~~--nd~~a~g~~~al~~~g~~di~vvgf 215 (272)
T cd06313 173 IWETWLTKY-PQLDGAFCH--NDSMALAAYQIMKAAGRTKIVIGGV 215 (272)
T ss_pred HHHHHHHhC-CCCCEEEEC--CCcHHHHHHHHHHHcCCCceEEEee
Confidence 344555443 468998886 45577799999988764 7777775
No 416
>PRK09414 glutamate dehydrogenase; Provisional
Probab=60.49 E-value=44 Score=30.02 Aligned_cols=53 Identities=9% Similarity=-0.061 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 48 KDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
=-|+..+.+..+.+.........+|+.-..||-|..+|.....+|.+++.+.+
T Consensus 211 Tg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 211 TGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred ccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 34677777777655443333346788889999999999999999999998866
No 417
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=60.42 E-value=49 Score=22.24 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=48.8
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHH--HHHHcCCcEEEEEcCCCCHHHHHHHHHc-CCEEEE
Q 028372 44 CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF--IAAARGYNLIIVMPSTCSMERRIVLRAL-GAEIIL 120 (210)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~--~a~~~g~~~~vvvp~~~~~~~~~~~~~~-Ga~v~~ 120 (210)
.|....-.+..+........ +...++.+++-++.-+++. .|...+.|..++- .+.+......++.+ ..+|+.
T Consensus 4 ~G~dRyeTs~~va~~~~~~~----~~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~i 78 (92)
T PF04122_consen 4 SGADRYETSAKVAKKFYPDN----KSDKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYI 78 (92)
T ss_pred CCCCHHHHHHHHHHHhcccC----CCCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEE
Confidence 35333444555555432222 1255676777676666555 4666788877765 77788888888877 458888
Q ss_pred ECCCCCH
Q 028372 121 ADSALRF 127 (210)
Q Consensus 121 v~~~~~~ 127 (210)
+++...+
T Consensus 79 iGg~~~i 85 (92)
T PF04122_consen 79 IGGEGAI 85 (92)
T ss_pred ECCCCcc
Confidence 8875433
No 418
>PRK06196 oxidoreductase; Provisional
Probab=60.42 E-value=99 Score=25.74 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=25.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+..+|--|.++|..-...|.+++++..
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R 58 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPAR 58 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 46788888888999999888888988777654
No 419
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=60.31 E-value=15 Score=27.26 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=26.0
Q ss_pred EEeeCCCchHHHHHHHHHHcCCcEEEEEcCC
Q 028372 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (210)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~ 102 (210)
++.+.+|.-+.+++..++.+|++++++=|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 3567899999999999999999999998764
No 420
>PRK07576 short chain dehydrogenase; Provisional
Probab=60.29 E-value=77 Score=25.56 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=35.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+..+|.-|.+++......|.+++++...... ....+.+...+.+++.+.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVS 64 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEE
Confidence 477888888999999999888889997776543221 122234455566665444
No 421
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=60.14 E-value=91 Score=25.23 Aligned_cols=54 Identities=31% Similarity=0.469 Sum_probs=36.6
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v 118 (210)
...+.++...++...+|..|.+++..++.+|.+++++... ..+.+.++.+|++.
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 187 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGADH 187 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCce
Confidence 3455666666776667999999999999999986665443 23444445566543
No 422
>PRK06924 short chain dehydrogenase; Provisional
Probab=60.05 E-value=83 Score=24.86 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=33.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
..+|+.++|.-|.++|..-...|.+++++..... .......+..+.+++.+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~ 54 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTEN-KELTKLAEQYNSNLTFHS 54 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCch-HHHHHHHhccCCceEEEE
Confidence 5688888999999999998888998877654331 222222333455555443
No 423
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=60.02 E-value=50 Score=29.54 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=36.1
Q ss_pred EeeCCCchHHHHHHH-HHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 028372 73 IEVTSGNTGVGLAFI-AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (210)
Q Consensus 73 v~~ssGN~g~alA~~-a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~ 124 (210)
+..|+||+ .++-.. --..+-.-++++.+.+-..-++.++.+|++++.|+-+
T Consensus 127 iiit~G~t-~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ipv~md 178 (472)
T KOG0634|consen 127 IIITNGNT-DGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKIIPVKMD 178 (472)
T ss_pred EEEecCCc-hHHHHHHHHhhcCCCceEEecccchHHHHhccccCceEEecccc
Confidence 34566665 233333 2334666778888888889999999999999999854
No 424
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=59.97 E-value=17 Score=28.16 Aligned_cols=30 Identities=27% Similarity=0.456 Sum_probs=24.4
Q ss_pred EEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
|..-.+|..|.++|..+...|++++++-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 445677999999999999999999998764
No 425
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=59.83 E-value=1.3e+02 Score=26.92 Aligned_cols=45 Identities=7% Similarity=0.013 Sum_probs=31.2
Q ss_pred HHHHHHhhCCCCCEEEEccCc-hhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 164 GPEIWQDSGGKVDAFISGIGT-GGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 164 ~~Ei~~q~~~~~d~vv~pvG~-Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
..||.+++ +-|-.+|+...+ ..++..+..+++...+++++.||++
T Consensus 102 ~adlAk~l-~~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIl 147 (449)
T TIGR00379 102 TASVAKAL-DAPIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVIL 147 (449)
T ss_pred HHHHHHHh-CCCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 45888888 456666666665 4566776666766667888888874
No 426
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=59.82 E-value=1e+02 Score=25.70 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCC-CchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcC-CEEEEEC
Q 028372 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALG-AEIILAD 122 (210)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~~~~~vv~~ss-GN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~G-a~v~~v~ 122 (210)
.++....+.++.+.|. ..++..=- =.+..-+-.+|+.+|+..+.+++++++..+++.+.... .-|..+.
T Consensus 108 ~~Gie~F~~~~~~~Gv-----dGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 108 NYGIEKFLRRAKEAGV-----DGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVS 178 (265)
T ss_pred HhhHHHHHHHHHHcCC-----CEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 3566667777777775 34444422 23555677788888999888888888888888887666 5666554
No 427
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=59.70 E-value=16 Score=31.86 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCCCEEEEEEe
Q 028372 189 TGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 189 ~Gi~~~~k~~~~~~~vigv~~ 209 (210)
+=+...+++..|+..++.+++
T Consensus 108 s~l~e~l~d~y~~~~i~~~~v 128 (382)
T cd06059 108 SLLLELLSDEYPKILINTFSI 128 (382)
T ss_pred HHHHHHHHHhcCccceEeEEE
Confidence 444555677788887777765
No 428
>PRK07060 short chain dehydrogenase; Provisional
Probab=59.67 E-value=54 Score=25.78 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=36.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHH-HHHHcCCEEEEECCC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRI-VLRALGAEIILADSA 124 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~-~~~~~Ga~v~~v~~~ 124 (210)
++.+|+..+|.-|..++......|.+++++... ..+.+ ..+..+.+++.++-.
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~~ 63 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDVG 63 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecCC
Confidence 467888888999999999999999987766543 22222 224456777766643
No 429
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=59.65 E-value=96 Score=26.08 Aligned_cols=55 Identities=25% Similarity=0.376 Sum_probs=44.8
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
.+.+.++||...++-+..|--|..+.-.++..|--++.... +.+|.+..+.+|++
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~as---TaeK~~~akenG~~ 193 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATAS---TAEKHEIAKENGAE 193 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEec---cHHHHHHHHhcCCc
Confidence 45677888888888889999999999999999877665544 67888888899997
No 430
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=59.56 E-value=39 Score=28.64 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=39.3
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCH--HHHH----HHHHcCCEEEEEC
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRI----VLRALGAEIILAD 122 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~--~~~~----~~~~~Ga~v~~v~ 122 (210)
+.|.++ |.+..+.+-..|.+.+++.+++++|++++++.|+...+ ...+ ..+..|+++..++
T Consensus 141 ~~g~l~-g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 141 QFGDVS-KVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred HhCCcC-CcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 345443 33433444445788999999999999999999986422 2221 2355688876665
No 431
>PRK12831 putative oxidoreductase; Provisional
Probab=59.52 E-value=42 Score=30.08 Aligned_cols=51 Identities=22% Similarity=0.166 Sum_probs=39.1
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCC---CC--HHHHHHHHHcCCEEEE
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST---CS--MERRIVLRALGAEIIL 120 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~---~~--~~~~~~~~~~Ga~v~~ 120 (210)
+.|+...+||.|.-+|..+.++|.+++++.... .+ ...++.++..|.+++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~ 337 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDL 337 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 568889999999999999999999999987643 22 2344556677887764
No 432
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=59.47 E-value=1.1e+02 Score=25.88 Aligned_cols=12 Identities=50% Similarity=0.844 Sum_probs=5.9
Q ss_pred CCEEEEccCchhH
Q 028372 175 VDAFISGIGTGGT 187 (210)
Q Consensus 175 ~d~vv~pvG~Gg~ 187 (210)
+|. |+++|+|+.
T Consensus 79 ~d~-IIaiGGGs~ 90 (332)
T cd07766 79 VDA-VIAVGGGST 90 (332)
T ss_pred cCE-EEEeCCchH
Confidence 444 445555543
No 433
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=59.26 E-value=50 Score=30.35 Aligned_cols=45 Identities=11% Similarity=-0.000 Sum_probs=36.2
Q ss_pred CchHHHHHHHHHHcC-CcEEEEEcCCC--CHHHHHHHHHcCCEEEEEC
Q 028372 78 GNTGVGLAFIAAARG-YNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (210)
Q Consensus 78 GN~g~alA~~a~~~g-~~~~vvvp~~~--~~~~~~~~~~~Ga~v~~v~ 122 (210)
+|.+.+++.+++.+| ++++++.|+.. +....+.++..|+.+..+.
T Consensus 186 ~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 186 GRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 789999999999998 99999999865 4444566667788887655
No 434
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=59.07 E-value=1e+02 Score=25.64 Aligned_cols=55 Identities=33% Similarity=0.472 Sum_probs=39.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v 118 (210)
+.+.++++...+|.+ +|-.|.+++..++.+|.+.++.++. ...+...++.+|++-
T Consensus 155 ~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 209 (341)
T cd08262 155 RRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGADI 209 (341)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcE
Confidence 455667776666664 6889999889999999986555433 467777778888753
No 435
>PRK06247 pyruvate kinase; Provisional
Probab=58.98 E-value=1.4e+02 Score=27.10 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=69.2
Q ss_pred HHHHHHHcCCcEEEEE-----------cCCCCHHHHHHHHHcCCEEEEECCCC---C-HHHHHHHHHHHHHhCCCeE-Ec
Q 028372 84 LAFIAAARGYNLIIVM-----------PSTCSMERRIVLRALGAEIILADSAL---R-FEEILEKGEEILKKTPDGY-LL 147 (210)
Q Consensus 84 lA~~a~~~g~~~~vvv-----------p~~~~~~~~~~~~~~Ga~v~~v~~~~---~-~~~~~~~a~~~~~~~~~~~-~~ 147 (210)
+...|+.+|.++++-. |..+........-.-|++-+...++. . -.++.+...+.+++.+..+ +.
T Consensus 260 ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 339 (476)
T PRK06247 260 IIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYPVEAVRTMARIIRQVERDPTYP 339 (476)
T ss_pred HHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCHHHHHHHHHHHHHHHhhccchh
Confidence 4467888999988853 23333344444455688888776431 1 2455555555554432211 11
Q ss_pred ----CCC-CCChhHHHHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 148 ----RQF-ENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 148 ----~~~-~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
... ..........+..+.++.+++ +.++||+..-||.++--+ ....|.+.|++++
T Consensus 340 ~~~~~~~~~~~~~~~~~ia~sa~~~A~~l--~a~~Iv~~T~sG~ta~~i----sk~RP~~pI~a~t 399 (476)
T PRK06247 340 PLIHAQRPQPEATKRDAISYAARDIAERL--DLAALVAYTSSGDTALRA----ARERPPLPILALT 399 (476)
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHHHhC--CCCEEEEEcCCcHHHHHH----HhhCCCCCEEEEC
Confidence 000 000111223444556777777 468999999999995544 4568999999886
No 436
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=58.74 E-value=1.1e+02 Score=25.70 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=35.6
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
+.++...++ ..+|..|.+++..|+.+|.+.++++. .+..+...++.+|++.+
T Consensus 173 ~~~~~~vlI-~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~ 224 (350)
T cd08240 173 LVADEPVVI-IGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADVV 224 (350)
T ss_pred CCCCCEEEE-ECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcEE
Confidence 334545444 46799999999999999996555543 24666777777887543
No 437
>PRK07102 short chain dehydrogenase; Provisional
Probab=58.73 E-value=89 Score=24.64 Aligned_cols=54 Identities=17% Similarity=0.041 Sum_probs=35.2
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCH-HHHHHHH-HcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLR-ALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~-~~~~~~~-~~Ga~v~~v~~ 123 (210)
+.+|+..+|.-|.+++......|.+++++....... ...+.++ ..+.++..+..
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHEL 58 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 568888899999999999888999887776543211 1122222 23556665554
No 438
>PRK08339 short chain dehydrogenase; Provisional
Probab=58.50 E-value=74 Score=25.72 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=27.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+.++|.-|.++|......|.+++++..
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 46788889999999999999999999777654
No 439
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=58.28 E-value=97 Score=24.94 Aligned_cols=31 Identities=13% Similarity=0.333 Sum_probs=24.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
..+|+..+|.-|.++|......|.++++...
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~~V~~~~~ 33 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGYRVVLHYH 33 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCCeEEEEcC
Confidence 4578888888999999888888887766543
No 440
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=58.12 E-value=1.2e+02 Score=25.83 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=35.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
+...+.++...+|. ..|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 34456677676776 56899999999999999973333322 34455555667763
No 441
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=58.08 E-value=1e+02 Score=25.23 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCH--HHHHHHHHHHHHhCCCeEEcCCCCCChhHHH
Q 028372 81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF--EEILEKGEEILKKTPDGYLLRQFENPANPKI 158 (210)
Q Consensus 81 g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 158 (210)
+..+|.+.+..|.++.++ +.+...........++.+-..+...+.. ........+..... ....++-......+..
T Consensus 20 a~~la~~l~~~g~~vl~i-D~D~~n~~~~~~~~l~~~~~~i~~~~~i~~r~fD~Lve~i~~~~-~dvIIDngAs~~~~l~ 97 (241)
T PRK13886 20 AATIAQYKASKGQKPLCI-DTDPVNATFEGYKALNVRRLNIMDGDEINTRNFDALVEMIASTE-GDVIIDNGASSFVPLS 97 (241)
T ss_pred HHHHHHHHHhCCCCEEEE-ECCCCCchhhhHHhcCCcceecccCCccchhhHHHHHHHHhccC-CCEEEECCCcchHHHH
Confidence 455666777788887665 3322222233344455444433221111 11223333333333 2333432222222233
Q ss_pred HH--HhHHHHHHHhhCCCCCEEEE-ccCch----hHHHHHHHHHHhcCCCCEEEE
Q 028372 159 HY--ETTGPEIWQDSGGKVDAFIS-GIGTG----GTVTGAGRFLKENNPDIKVVL 206 (210)
Q Consensus 159 g~--~t~~~Ei~~q~~~~~d~vv~-pvG~G----g~~~Gi~~~~k~~~~~~~vig 206 (210)
.| .....|++++.+ .+.++. ++-+| -++.|+..-+.....++++|.
T Consensus 98 ~yl~~n~l~~ll~e~g--~~lvvh~vi~gg~~~~dtl~~~~~l~~~~~~~~~~Vv 150 (241)
T PRK13886 98 HYLISNQVPALLQDMG--HELVVHTVVTGGQALLDTVSGFAQLASQFPAECLFVV 150 (241)
T ss_pred HHHHhCcHHHHHHHCC--ceEEEEEEECCCcccHHHHHHHHHHHHHcCCCceEEE
Confidence 33 344557888773 344443 44444 577777665554434566654
No 442
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=58.05 E-value=50 Score=26.95 Aligned_cols=48 Identities=33% Similarity=0.380 Sum_probs=36.6
Q ss_pred CCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Q 028372 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (210)
Q Consensus 67 ~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~ 117 (210)
++...++...+|..|.+++..|+.+|.+++...+ ...+.+.++.+|+.
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 179 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAA 179 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCc
Confidence 3557677777799999999999999998655543 35677777778874
No 443
>PLN02253 xanthoxin dehydrogenase
Probab=58.04 E-value=69 Score=25.97 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=27.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
+..+|+..+|.-|.++|..-...|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 46789999999999999998888998877644
No 444
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=58.02 E-value=48 Score=27.84 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=35.1
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
++++...+|. ..|..|.+++..++.+|.+++++.+. ..+.+.++.+|++-+
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~v 217 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEF 217 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEE
Confidence 5566666664 47899999999999999976655443 345555566776543
No 445
>PRK08324 short chain dehydrogenase; Validated
Probab=57.94 E-value=1.7e+02 Score=27.65 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=26.3
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
++..+|+..+|.-|.++|......|.+++++..
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r 454 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGACVVLADL 454 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeC
Confidence 456788888899999999998889987665543
No 446
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=57.91 E-value=64 Score=27.63 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=35.7
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+.+++|.+.+| ...|.-|.+++..|+.+|.+++++.... ..+....+.+|++-+.
T Consensus 179 ~~~~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~~--~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSSS--NKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCCc--chhhhHHHhCCCcEEE
Confidence 34456655555 6679999999999999999865543322 2233445678885443
No 447
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=57.91 E-value=16 Score=30.47 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=26.5
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~ 101 (210)
..|+...+|-.|.++|.+.++.|++++++=..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 35788899999999999999999999998654
No 448
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=57.89 E-value=87 Score=26.23 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=34.5
Q ss_pred EEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 028372 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (210)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~ 124 (210)
++..++|..+..++..+-..+-.-.|++|..........++..|++++.++.+
T Consensus 36 ~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (352)
T cd00616 36 AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDID 88 (352)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecC
Confidence 44456776665555444322333467778777777777788889999888753
No 449
>PRK07023 short chain dehydrogenase; Provisional
Probab=57.84 E-value=61 Score=25.58 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=35.1
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
+.+|+..+|.-|.++|..-...|.+++++.....+. .....|.++..+..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~ 52 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS----LAAAAGERLAEVEL 52 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh----hhhccCCeEEEEEe
Confidence 468899999999999999888899988876543221 13345666655543
No 450
>PRK12747 short chain dehydrogenase; Provisional
Probab=57.66 E-value=67 Score=25.50 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=36.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC--CHHHHHHHHHcCCEEEEEC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~--~~~~~~~~~~~Ga~v~~v~ 122 (210)
+..+|+.++|--|.++|..-...|.++++...... .......++..|.++..+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 47789999999999999998889998877543221 1222334455566655444
No 451
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=57.65 E-value=91 Score=24.43 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=36.3
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~~ 123 (210)
..+|+..+|.-|.+++......|.+++++...+.. ......++..|.++..+..
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQA 58 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEc
Confidence 46888888999999999888889988765543322 2223345556766655543
No 452
>PRK07775 short chain dehydrogenase; Provisional
Probab=57.53 E-value=94 Score=25.20 Aligned_cols=54 Identities=22% Similarity=0.176 Sum_probs=36.3
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~-~~~~~~~~~~Ga~v~~v~~ 123 (210)
..+|+..+|..|.+++......|.+++++...... ..-...++..|.++..+..
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPL 66 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 66888888999999999888889987766543211 1122335556777766554
No 453
>PLN02461 Probable pyruvate kinase
Probab=57.46 E-value=1.6e+02 Score=27.10 Aligned_cols=120 Identities=9% Similarity=0.095 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCcEEEEEc-----------CCCCHHHHHHHHHcCCEEEEECCCC---C-HHHHHHHHHHHHHhCCCeE--
Q 028372 83 GLAFIAAARGYNLIIVMP-----------STCSMERRIVLRALGAEIILADSAL---R-FEEILEKGEEILKKTPDGY-- 145 (210)
Q Consensus 83 alA~~a~~~g~~~~vvvp-----------~~~~~~~~~~~~~~Ga~v~~v~~~~---~-~~~~~~~a~~~~~~~~~~~-- 145 (210)
-+-..|+.+|.|+++-.- ..+........-..|++-+...++. . -.++.+...+.+++-+..+
T Consensus 283 ~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 362 (511)
T PLN02461 283 MMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDY 362 (511)
T ss_pred HHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccch
Confidence 455679999999988642 2222333334445688888766431 1 2355555555544332211
Q ss_pred ---EcCCC--CC-ChhHHHHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 146 ---LLRQF--EN-PANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 146 ---~~~~~--~n-~~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
|-... .+ +..+....+..+.++.+++ +.++||+..-||.++--+ ....|.+.|++++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l--~a~aIiv~T~sG~tA~~i----Sk~RP~~pIia~t 425 (511)
T PLN02461 363 GALFKEIMRSAPLPMSPLESLASSAVRTANKV--KASLIVVLTRGGTTARLV----AKYRPAVPILSVV 425 (511)
T ss_pred hhhhhhhcccccccCChHHHHHHHHHHHHHhC--CCCEEEEECCCcHHHHHH----HhhCCCCCEEEEe
Confidence 11110 10 1112233445566777777 467899999999985444 4568999999986
No 454
>PRK09206 pyruvate kinase; Provisional
Probab=57.41 E-value=1.5e+02 Score=26.89 Aligned_cols=119 Identities=10% Similarity=0.033 Sum_probs=66.9
Q ss_pred HHHHHHHcCCcEEEEE-----------cCCCCHHHHHHHHHcCCEEEEECCCC---C-HHHHHHHHHHHHHhCCCeE-E-
Q 028372 84 LAFIAAARGYNLIIVM-----------PSTCSMERRIVLRALGAEIILADSAL---R-FEEILEKGEEILKKTPDGY-L- 146 (210)
Q Consensus 84 lA~~a~~~g~~~~vvv-----------p~~~~~~~~~~~~~~Ga~v~~v~~~~---~-~~~~~~~a~~~~~~~~~~~-~- 146 (210)
+...|+..|.++++-. |..+........-.-|++-+...++. . -.++.+...+.+++.+..+ +
T Consensus 263 ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~~E~~~~~~ 342 (470)
T PRK09206 263 MIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSR 342 (470)
T ss_pred HHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhcchh
Confidence 5567888999988853 22333333444445688877765431 1 2345555444444322111 1
Q ss_pred c-CCCCCC-hhHHHHHHhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEE
Q 028372 147 L-RQFENP-ANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRV 208 (210)
Q Consensus 147 ~-~~~~n~-~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~ 208 (210)
+ .+.... ........-.+.++.+++ +.++||+..-||.++--+ ....|.+.|++++
T Consensus 343 ~~~~~~~~~~~~~~~ia~sa~~~A~~l--~a~aIv~~T~sG~tA~~i----s~~RP~~pIia~t 400 (470)
T PRK09206 343 LESNNDNRKLRITEAVCRGAVETAEKL--DAPLIVVATQGGKSARSV----RKYFPDATILALT 400 (470)
T ss_pred hhhhccccCCChHHHHHHHHHHHHhcC--CCCEEEEECCCcHHHHHH----HhhCCCCCEEEEC
Confidence 0 011010 011223444556777776 467899999999995444 4568999999886
No 455
>PRK13984 putative oxidoreductase; Provisional
Probab=57.37 E-value=47 Score=30.79 Aligned_cols=51 Identities=25% Similarity=0.377 Sum_probs=38.1
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC------------------HHHHHHHHHcCCEEEE
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS------------------MERRIVLRALGAEIIL 120 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~------------------~~~~~~~~~~Ga~v~~ 120 (210)
+.|+...+|..|.+.|...++.|++++++-..... ....+.++.+|.+++.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 44666679999999999999999999988543211 2345677888988764
No 456
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=57.35 E-value=85 Score=24.41 Aligned_cols=52 Identities=25% Similarity=0.235 Sum_probs=35.7
Q ss_pred EEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHcCCEEEEECC
Q 028372 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (210)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~~~~Ga~v~~v~~ 123 (210)
+|+.++|-.|..+|..-...|.+++++.....+ ....+.++..|+++..+..
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVC 55 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEe
Confidence 677888889999998888889987776554311 2334455667877665543
No 457
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=57.22 E-value=77 Score=26.87 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=43.5
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHH-HHHhCCCeEEcCC
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEE-ILKKTPDGYLLRQ 149 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~-~~~~~~~~~~~~~ 149 (210)
.|+..+++..+..++..+- .+-.-.++++.-.-..-....+.+|++++.++-+.++.-..+...+ +.+.....+++..
T Consensus 83 ~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 161 (356)
T PRK04870 83 DVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAY 161 (356)
T ss_pred cEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcC
Confidence 4665666666655544332 2222345555544445566778899999998754222101112222 2223446777764
Q ss_pred CCCCh
Q 028372 150 FENPA 154 (210)
Q Consensus 150 ~~n~~ 154 (210)
..||.
T Consensus 162 p~NPt 166 (356)
T PRK04870 162 PNNPT 166 (356)
T ss_pred CCCCC
Confidence 45664
No 458
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=57.08 E-value=68 Score=25.08 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=35.5
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHHcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVLRALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~--~~~~~~~~~Ga~v~~v~~ 123 (210)
..+|+..+|.-|..+|......|.+++++..++... .....+...+.++..+..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEG 57 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEe
Confidence 458888899999999999888999887766532211 112234445666655543
No 459
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=56.93 E-value=53 Score=28.68 Aligned_cols=51 Identities=25% Similarity=0.201 Sum_probs=34.2
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCC--cEEEEEcCCCCHHHHHHHHHc
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGY--NLIIVMPSTCSMERRIVLRAL 114 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~--~~~vvvp~~~~~~~~~~~~~~ 114 (210)
...+++|.+.+|...+|..|.+.+..|+.+|. ..++++ ...+.+++.++.+
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~ 222 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRL 222 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHh
Confidence 34566776666666679999998888999876 223332 3356677777776
No 460
>PRK06836 aspartate aminotransferase; Provisional
Probab=56.90 E-value=1.3e+02 Score=26.00 Aligned_cols=83 Identities=12% Similarity=0.205 Sum_probs=42.3
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCC-HHHHHHHHHHHHHhCCCeEEcCC
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR-FEEILEKGEEILKKTPDGYLLRQ 149 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~-~~~~~~~a~~~~~~~~~~~~~~~ 149 (210)
.|+..++++.+..++..+- ..-.-.|+++...-..-...++.+|++++.++.+.+ +.--.+..++...+....+++..
T Consensus 98 ~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~ 176 (394)
T PRK06836 98 HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINS 176 (394)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeC
Confidence 4666666667666554432 222234555554433345566789999999875322 11011222222233345666654
Q ss_pred CCCCh
Q 028372 150 FENPA 154 (210)
Q Consensus 150 ~~n~~ 154 (210)
..||.
T Consensus 177 p~NPt 181 (394)
T PRK06836 177 PNNPT 181 (394)
T ss_pred CCCCC
Confidence 45554
No 461
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=56.82 E-value=76 Score=26.96 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=41.0
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHH-HHHHHHHHHHHhCCCeEEcCC
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE-EILEKGEEILKKTPDGYLLRQ 149 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~-~~~~~a~~~~~~~~~~~~~~~ 149 (210)
.|+..+++..+..++..+- ++-.-.|+++.-.-..-....+..|++++.++.+.++. +.....+.+........++..
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~ 156 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCN 156 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeC
Confidence 4665666666655554433 22223344444333344556688999999987542211 111122222222346777654
Q ss_pred CCCCh
Q 028372 150 FENPA 154 (210)
Q Consensus 150 ~~n~~ 154 (210)
..||.
T Consensus 157 p~NPt 161 (351)
T PRK14807 157 PNNPT 161 (351)
T ss_pred CCCCC
Confidence 45554
No 462
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=56.81 E-value=41 Score=29.13 Aligned_cols=52 Identities=27% Similarity=0.293 Sum_probs=35.1
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 66 ~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+++...++ ..+|..|.+++..|+.+|.+++++.+. +..+.+.++.+|++.+.
T Consensus 177 ~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESGKRLGV-NGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCCEEEE-EcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 45655455 456899999999999999986555332 23345666788986443
No 463
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=56.69 E-value=1e+02 Score=24.76 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=47.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHH-------------HHHHHcCCEEEEECCCCCHHHHHHHHHH
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERR-------------IVLRALGAEIILADSALRFEEILEKGEE 136 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~-------------~~~~~~Ga~v~~v~~~~~~~~~~~~a~~ 136 (210)
+++.....||-|.++|..-...|+++++--+........ .....-+++|++.--+ |.......++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP--~~a~~~v~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVP--FEAIPDVLAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEecc--HHHHHhHHHH
Confidence 346667889999999999999999988875443221110 0112334666665543 4555566666
Q ss_pred HHHhCCCeEEcCC
Q 028372 137 ILKKTPDGYLLRQ 149 (210)
Q Consensus 137 ~~~~~~~~~~~~~ 149 (210)
+....++-..++.
T Consensus 80 l~~~~~~KIvID~ 92 (211)
T COG2085 80 LRDALGGKIVIDA 92 (211)
T ss_pred HHHHhCCeEEEec
Confidence 6655544555544
No 464
>PRK06847 hypothetical protein; Provisional
Probab=56.66 E-value=20 Score=30.63 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=27.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
..|+...+|-.|.++|...++.|++++++=.
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 4578889999999999999999999998854
No 465
>PRK08912 hypothetical protein; Provisional
Probab=56.55 E-value=1.3e+02 Score=25.85 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=42.4
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 028372 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (210)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~-~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v 121 (210)
+.|....|.+...... ...|. ..+. ..|+..+++..+..++..+-.. -.-+|+++.-.-..-...++.+|++++.+
T Consensus 62 ~~G~~~lr~~ia~~~~-~~~g~~~~~~-~~i~~t~G~~~al~~~~~~~~~-~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 138 (387)
T PRK08912 62 MMGLPELRQAVAAHYA-RFQGLDLDPE-TEVMVTSGATEALAAALLALVE-PGDEVVLFQPLYDAYLPLIRRAGGVPRLV 138 (387)
T ss_pred CCCcHHHHHHHHHHHH-HHhCCCCCCc-ccEEEeCCcHHHHHHHHHHhcC-CCCEEEEeCCCchhhHHHHHHcCCEEEEE
Confidence 4565566654443222 12232 2222 1567677778877655554422 22345555544344455678899999887
Q ss_pred CC
Q 028372 122 DS 123 (210)
Q Consensus 122 ~~ 123 (210)
+.
T Consensus 139 ~~ 140 (387)
T PRK08912 139 RL 140 (387)
T ss_pred ec
Confidence 64
No 466
>PRK06123 short chain dehydrogenase; Provisional
Probab=56.54 E-value=67 Score=25.32 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=33.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC--CHHHHHHHHHcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~--~~~~~~~~~~~Ga~v~~v~~ 123 (210)
..+|+..+|.-|.++|..-...|..+++...... .......++..|.+++.+..
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 59 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAA 59 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 5688888899999999887778887654432221 11223345566776655443
No 467
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=56.52 E-value=75 Score=26.91 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=39.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHH----HHcCCEEEEEC
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVL----RALGAEIILAD 122 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~--~~~~~~~----~~~Ga~v~~v~ 122 (210)
+.|.++ |.+..+.+-.+|.+.+++.+++.+|++++++.|+... ....+.+ +..|+++...+
T Consensus 142 ~~g~l~-g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 142 HFGKLK-GVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred HhCCCC-CcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 345443 3333334444799999999999999999999998642 3333332 45677776654
No 468
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=56.49 E-value=28 Score=25.52 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=22.3
Q ss_pred CCCCCeEEEeeCCCchHHHH--HHHHHHcCCcEEEEE
Q 028372 65 ITPGKTTLIEVTSGNTGVGL--AFIAAARGYNLIIVM 99 (210)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~al--A~~a~~~g~~~~vvv 99 (210)
++||..-++.++|||+..-+ +..|+..|++++.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 34555666777789887665 445999999998875
No 469
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=56.43 E-value=1.1e+02 Score=25.10 Aligned_cols=54 Identities=30% Similarity=0.391 Sum_probs=36.5
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
.+.+.++...++. .+|..|.+++..|+..|.++++..+ ...+++.++.+|++-+
T Consensus 155 ~~~~~~g~~vli~-g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~ 208 (336)
T cd08276 155 LGPLKPGDTVLVQ-GTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHV 208 (336)
T ss_pred hcCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 3456666555554 6788999999999999999666544 3445555655676543
No 470
>PRK05599 hypothetical protein; Provisional
Probab=56.14 E-value=1e+02 Score=24.56 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=22.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEc
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp 100 (210)
..+|+.+++.-|.++|..-.. |.+++++..
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g~~Vil~~r 31 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-GEDVVLAAR 31 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-CCEEEEEeC
Confidence 357888888888888887654 877766644
No 471
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=56.06 E-value=87 Score=26.95 Aligned_cols=54 Identities=28% Similarity=0.456 Sum_probs=37.8
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Q 028372 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (210)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~ 119 (210)
+.++++...+|. ..|..|.+++..|+.+|...++++.. .+.+.+.++.+|++-+
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~ 252 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYV 252 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEE
Confidence 456677666666 57999999999999999854444432 3347777788887544
No 472
>PRK08068 transaminase; Reviewed
Probab=55.94 E-value=1.3e+02 Score=25.82 Aligned_cols=77 Identities=12% Similarity=-0.015 Sum_probs=40.2
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 44 CSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~-~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
.|.-..|-+..-.... ..|. +.++ ..|+..+++..+..++..+ ..+-.-.|++|.-+-..-...++..|++++.++
T Consensus 70 ~g~~~lr~aia~~~~~-~~g~~~~~~-~~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 70 RGYPFLKEAAADFYKR-EYGVTLDPE-TEVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMP 146 (389)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCCC-ccEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEee
Confidence 4555555444333221 2242 3332 1466666666766554332 223334455665443344445678999999887
Q ss_pred C
Q 028372 123 S 123 (210)
Q Consensus 123 ~ 123 (210)
-
T Consensus 147 ~ 147 (389)
T PRK08068 147 L 147 (389)
T ss_pred c
Confidence 5
No 473
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=55.88 E-value=1.5e+02 Score=26.51 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=39.5
Q ss_pred CCCCchhhHHHHHHHHHHHHcC---CCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcC-CCCHHHHHHHH-HcCC
Q 028372 42 EPCSSVKDRIAYSMIKDAEDKG---LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS-TCSMERRIVLR-ALGA 116 (210)
Q Consensus 42 ~ptGS~K~R~a~~~~~~a~~~g---~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~-~~~~~~~~~~~-~~Ga 116 (210)
.+.|+...|.+..-.... ..| .+.+ ..|+..++++.+..+...+- ++-.-.|++|. .-+... ..++ ..|+
T Consensus 84 ~~~G~~~LR~aiA~~l~~-~~~~~~~v~~--~~Iiit~Ga~~al~~l~~~l-~~pGd~Vlv~~P~Y~~~~-~~~~~~~g~ 158 (468)
T PLN02450 84 DYHGLPAFKNALAEFMSE-IRGNKVTFDP--NKLVLTAGATSANETLMFCL-AEPGDAFLLPTPYYPGFD-RDLKWRTGV 158 (468)
T ss_pred CCCChHHHHHHHHHHHHH-hhCCCCCcCh--HHeEEccChHHHHHHHHHHh-CCCCCEEEECCCCCCchH-HHHhhcCCc
Confidence 356776777654443322 122 1233 34666677777665554432 23223444543 333332 2333 5899
Q ss_pred EEEEECC
Q 028372 117 EIILADS 123 (210)
Q Consensus 117 ~v~~v~~ 123 (210)
+++.++.
T Consensus 159 ~~v~v~~ 165 (468)
T PLN02450 159 EIVPIHC 165 (468)
T ss_pred EEEEEec
Confidence 9998874
No 474
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=55.79 E-value=30 Score=30.94 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=36.5
Q ss_pred HHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 165 ~Ei~~q~~~~~d~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
..+.+.++-.+--||=+.|-..+++++..+|+...|++++-||.+
T Consensus 104 A~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIl 148 (451)
T COG1797 104 ADLAKLLGAPVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVIL 148 (451)
T ss_pred HHHHHHhCCCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEE
Confidence 467777755555566677778999999999999999999999975
No 475
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=55.75 E-value=69 Score=27.48 Aligned_cols=11 Identities=45% Similarity=0.842 Sum_probs=5.7
Q ss_pred CCEEEEccCchh
Q 028372 175 VDAFISGIGTGG 186 (210)
Q Consensus 175 ~d~vv~pvG~Gg 186 (210)
+| +|+++|+|+
T Consensus 78 ~d-~IIavGGGs 88 (349)
T cd08550 78 AD-VIIGVGGGK 88 (349)
T ss_pred CC-EEEEecCcH
Confidence 44 445566554
No 476
>PRK05957 aspartate aminotransferase; Provisional
Probab=55.67 E-value=70 Score=27.63 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=29.1
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~ 124 (210)
..++..++++.+..++..+- +.-.-.|+++.-.-..-....+..|++++.++.+
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 143 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD 143 (389)
T ss_pred CeEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC
Confidence 34676777777765554432 2222234444321122233457789999988754
No 477
>PRK10490 sensor protein KdpD; Provisional
Probab=55.51 E-value=1.7e+02 Score=28.69 Aligned_cols=107 Identities=15% Similarity=0.063 Sum_probs=60.6
Q ss_pred eEEEeeCCCchHHHH----HHHHHHcCCcEEEEEcCC-----CCH-------HHHHHHHHcCCEEEEECCCCCHHHHHHH
Q 028372 70 TTLIEVTSGNTGVGL----AFIAAARGYNLIIVMPST-----CSM-------ERRIVLRALGAEIILADSALRFEEILEK 133 (210)
Q Consensus 70 ~~vv~~ssGN~g~al----A~~a~~~g~~~~vvvp~~-----~~~-------~~~~~~~~~Ga~v~~v~~~~~~~~~~~~ 133 (210)
+.+|+-+++.++..+ +-.|.+++-+++++.-.+ .+. ..++..+.+||+++.+.+++ ..+ .
T Consensus 252 riLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~d-va~---~ 327 (895)
T PRK10490 252 AILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDPA-EEK---A 327 (895)
T ss_pred eEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCC-HHH---H
Confidence 457777777665443 445777787777654321 111 22446678999999888743 332 2
Q ss_pred HHHHHHhCC-CeEEcCCCCCChhHHHHHHhHHHHHHHhhCCCCCEEEEccC
Q 028372 134 GEEILKKTP-DGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIG 183 (210)
Q Consensus 134 a~~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~pvG 183 (210)
..+++++.+ ....+.+..... | ....++...+++.. +++|..|+|..
T Consensus 328 i~~~A~~~~vt~IViG~s~~~~-~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 328 VLRYAREHNLGKIIIGRRASRR-W-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHhCCCEEEECCCCCCC-C-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 234444442 233444332221 2 22347778888887 57887777643
No 478
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=55.47 E-value=77 Score=22.93 Aligned_cols=54 Identities=33% Similarity=0.338 Sum_probs=34.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCc-EEEEEcCCCCHH----HHHHHHHcCCEEEEECC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSME----RRIVLRALGAEIILADS 123 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~-~~vvvp~~~~~~----~~~~~~~~Ga~v~~v~~ 123 (210)
+.+++..+|..|.+++......|.. ++++.+...+.. ..+.++..|.++..+..
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVAC 60 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEEC
Confidence 4577788888999999888888875 444433322221 13556667888766654
No 479
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=55.29 E-value=89 Score=27.00 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=7.5
Q ss_pred HHHHHHcCCcEEEEEcC
Q 028372 85 AFIAAARGYNLIIVMPS 101 (210)
Q Consensus 85 A~~a~~~g~~~~vvvp~ 101 (210)
....+.+|-++.++.++
T Consensus 22 ~~~l~~~g~~~livtd~ 38 (366)
T PRK09423 22 GEYLKPLGKRALVIADE 38 (366)
T ss_pred HHHHHHcCCEEEEEECh
Confidence 33344445444444443
No 480
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=55.05 E-value=1.2e+02 Score=25.18 Aligned_cols=55 Identities=33% Similarity=0.369 Sum_probs=36.0
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEE
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v 118 (210)
+...+.+++..+|.+ +|-.|.+++..|+.+|.+.++++.. +..+.+.++.+|++-
T Consensus 159 ~~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~~--s~~~~~~~~~~g~~~ 213 (343)
T cd08235 159 RKAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSDL--NEFRLEFAKKLGADY 213 (343)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCcE
Confidence 334567776767764 6789999999999999994333322 344455556667643
No 481
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=54.89 E-value=1.4e+02 Score=25.63 Aligned_cols=83 Identities=10% Similarity=-0.013 Sum_probs=40.6
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCC
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQF 150 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (210)
.|+..++...+..++..+- ..-.-.++++.-.-+.-...++.+|++++.++-+.+..+.....+....+..+.+|+...
T Consensus 86 ~I~it~G~~~~l~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~~~~~~~l~~~~~~~~~~~i~l~~P 164 (369)
T PRK08153 86 NIMVGEGIDGLLGLIVRLY-VEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDDREDLDALLDAARRENAPLVYLANP 164 (369)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCCCCCHHHHHHHhcccCCcEEEEeCC
Confidence 4666666666655554432 122234555543333333456678999998874322222222222222333456666433
Q ss_pred CCCh
Q 028372 151 ENPA 154 (210)
Q Consensus 151 ~n~~ 154 (210)
.||.
T Consensus 165 ~NPt 168 (369)
T PRK08153 165 DNPM 168 (369)
T ss_pred CCCC
Confidence 4544
No 482
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=54.88 E-value=53 Score=32.73 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=38.5
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC--------------C----HHHHHHHHHcCCEEEE
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--------------S----MERRIVLRALGAEIIL 120 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~--------------~----~~~~~~~~~~Ga~v~~ 120 (210)
+.|+.-.+|..|.+.|+..++.|++++++=.... + ....+.++.+|.+++.
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 5688899999999999999999999998864321 1 1224566778887764
No 483
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=54.66 E-value=52 Score=28.68 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=12.7
Q ss_pred HHHHHhhCCCCCEEEEccCchhHH
Q 028372 165 PEIWQDSGGKVDAFISGIGTGGTV 188 (210)
Q Consensus 165 ~Ei~~q~~~~~d~vv~pvG~Gg~~ 188 (210)
.+++++. ++| +|+++|+|+.+
T Consensus 80 ~~~~~~~--~~D-~IIaiGGGS~i 100 (382)
T PRK10624 80 VEVFKAS--GAD-YLIAIGGGSPQ 100 (382)
T ss_pred HHHHHhc--CCC-EEEEeCChHHH
Confidence 3444443 467 57788887754
No 484
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=54.55 E-value=1.4e+02 Score=25.65 Aligned_cols=109 Identities=14% Similarity=0.109 Sum_probs=51.0
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCCchHHHHHHHHHH-cCCcEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 028372 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (210)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~-~~~~~~~vv~~ssGN~g~alA~~a~~-~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 120 (210)
+.|....|-+..-... ...|. +.+. ..|+..+++..+..++..+-. -| +. |+++.-.-..-...++..|++++.
T Consensus 67 ~~G~~~lr~aia~~~~-~~~g~~~~~~-~~I~it~Gs~~al~~~~~~l~~~g-d~-Vlv~~P~y~~~~~~~~~~g~~~~~ 142 (388)
T PRK07366 67 FHGTLDFREAAAQWYE-QRFGLAVDPE-TEVLPLIGSQEGTAHLPLAVLNPG-DF-ALLLDPGYPSHAGGVYLAGGQIYP 142 (388)
T ss_pred CCCCHHHHHHHHHHHH-HhhCCcCCCc-CeEEECCCcHHHHHHHHHHhCCCC-CE-EEEcCCCCcchHHHHHhcCCEEEE
Confidence 3465555544332221 12242 3332 146666667776665544322 23 33 333332222234556778999998
Q ss_pred ECCC--CCHHHHHHHHHHHHHhCCCeEEcCCCCCChh
Q 028372 121 ADSA--LRFEEILEKGEEILKKTPDGYLLRQFENPAN 155 (210)
Q Consensus 121 v~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~ 155 (210)
++-+ ..+....+...+........++++...||..
T Consensus 143 v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG 179 (388)
T PRK07366 143 MPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTT 179 (388)
T ss_pred EECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCC
Confidence 8643 1221111112121222346778776667754
No 485
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=54.51 E-value=79 Score=24.65 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=39.1
Q ss_pred HHHHHHHcCCCCCCCeEEEeeCCCchHHH-HHHHHHHcCCcEEEEEcCCCC------HHHHHHHHHcCCEEE
Q 028372 55 MIKDAEDKGLITPGKTTLIEVTSGNTGVG-LAFIAAARGYNLIIVMPSTCS------MERRIVLRALGAEII 119 (210)
Q Consensus 55 ~~~~a~~~g~~~~~~~~vv~~ssGN~g~a-lA~~a~~~g~~~~vvvp~~~~------~~~~~~~~~~Ga~v~ 119 (210)
+.....+.|. .+.+++.-..|.+.. .|..+..+|++++++.+-... ..-++.|+..|++|+
T Consensus 129 L~~~L~~~~i----~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 129 LAEYLRERGI----DRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHHHHHCCC----CEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 3444455564 255677777777764 556688899999988775332 233666677787763
No 486
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=54.27 E-value=97 Score=26.42 Aligned_cols=13 Identities=46% Similarity=0.685 Sum_probs=7.0
Q ss_pred CCCEEEEccCchhH
Q 028372 174 KVDAFISGIGTGGT 187 (210)
Q Consensus 174 ~~d~vv~pvG~Gg~ 187 (210)
++|. |+++|+|+.
T Consensus 77 ~~d~-IIaiGGGs~ 89 (337)
T cd08177 77 GADG-IVAIGGGST 89 (337)
T ss_pred CCCE-EEEeCCcHH
Confidence 3554 455666554
No 487
>PRK07324 transaminase; Validated
Probab=54.16 E-value=68 Score=27.60 Aligned_cols=82 Identities=10% Similarity=0.081 Sum_probs=42.1
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--CCHH-HHHHHHHHHHHhCCCeEEc
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA--LRFE-EILEKGEEILKKTPDGYLL 147 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~--~~~~-~~~~~a~~~~~~~~~~~~~ 147 (210)
.|+..+++..+..++..+- ++-.-.|+++.-.-..-....+.+|++++.++.+ .++. +. +...+....+...+++
T Consensus 82 ~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~-~~l~~~~~~~~kli~i 159 (373)
T PRK07324 82 NILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDL-DELRRLVRPNTKLICI 159 (373)
T ss_pred hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCH-HHHHHhCCCCCcEEEE
Confidence 4666666677766665543 2222234444433333445678899999988742 1121 11 1122222233456666
Q ss_pred CCCCCCh
Q 028372 148 RQFENPA 154 (210)
Q Consensus 148 ~~~~n~~ 154 (210)
+...||.
T Consensus 160 ~~p~NPt 166 (373)
T PRK07324 160 NNANNPT 166 (373)
T ss_pred eCCCCCC
Confidence 6545664
No 488
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=54.11 E-value=65 Score=27.60 Aligned_cols=12 Identities=50% Similarity=0.841 Sum_probs=6.3
Q ss_pred CCEEEEccCchhH
Q 028372 175 VDAFISGIGTGGT 187 (210)
Q Consensus 175 ~d~vv~pvG~Gg~ 187 (210)
+| +|+++|+|+.
T Consensus 78 ~D-~IIavGGGS~ 89 (351)
T cd08170 78 AD-VVIGIGGGKT 89 (351)
T ss_pred CC-EEEEecCchh
Confidence 44 3556665554
No 489
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=54.10 E-value=83 Score=22.91 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHH
Q 028372 81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGE 135 (210)
Q Consensus 81 g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~ 135 (210)
|..+|-.....|.+++++ ...-+.-...++..|-+|+..++ .+.++++....
T Consensus 54 G~~~a~~l~~~gvdvvi~--~~iG~~a~~~l~~~GIkv~~~~~-~~V~e~i~~~~ 105 (121)
T COG1433 54 GIRIAELLVDEGVDVVIA--SNIGPNAYNALKAAGIKVYVAPG-GTVEEAIKAFL 105 (121)
T ss_pred hHHHHHHHHHcCCCEEEE--CccCHHHHHHHHHcCcEEEecCC-CCHHHHHHHHh
Confidence 455666677777776665 44445556677888888888887 45776665543
No 490
>PTZ00387 epsilon tubulin; Provisional
Probab=53.92 E-value=22 Score=32.13 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=32.3
Q ss_pred EEcCCCCCChhHHHHHHhHHHHHHHhh----C------CCCCEEEEcc--C--ch-hHHHHHHHHHHhcCCCCEEEEEEe
Q 028372 145 YLLRQFENPANPKIHYETTGPEIWQDS----G------GKVDAFISGI--G--TG-GTVTGAGRFLKENNPDIKVVLRVL 209 (210)
Q Consensus 145 ~~~~~~~n~~~~~~g~~t~~~Ei~~q~----~------~~~d~vv~pv--G--~G-g~~~Gi~~~~k~~~~~~~vigv~~ 209 (210)
++..+.+...||..||.+.|.|+.+++ . +.++.+++-. | || |+.+=+...+++.+|+.-++.+++
T Consensus 91 ~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~~~~~~~V 170 (465)
T PTZ00387 91 FVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCPVV 170 (465)
T ss_pred ccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcccCceeeeEe
Confidence 333443444455557655555444332 1 2355444443 3 22 334445556677788776655544
No 491
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=53.90 E-value=1.5e+02 Score=26.47 Aligned_cols=55 Identities=18% Similarity=0.102 Sum_probs=38.5
Q ss_pred eEEEeeCCCchHHHHHHHHHH------cCC--cEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAA------RGY--NLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~------~g~--~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~ 124 (210)
..++..+||..+..+|+.+.. .++ .-.|++|...-......+...|++++.++.+
T Consensus 79 ~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd 141 (438)
T PRK15407 79 RYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVE 141 (438)
T ss_pred CeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 346777778888777776541 133 2467778777677777888899999988753
No 492
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.66 E-value=1.4e+02 Score=25.73 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=24.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCC
Q 028372 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC 103 (210)
Q Consensus 70 ~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~ 103 (210)
..+++..|.--|.++|.-|+..|-+++++.++..
T Consensus 35 hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~ 68 (331)
T KOG1210|consen 35 HILITGGSSGLGLALALECKREGADVTITARSGK 68 (331)
T ss_pred eEEEecCcchhhHHHHHHHHHccCceEEEeccHH
Confidence 3455555555666777779999999999887643
No 493
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=53.53 E-value=65 Score=27.41 Aligned_cols=37 Identities=27% Similarity=0.183 Sum_probs=29.6
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCC
Q 028372 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS 104 (210)
Q Consensus 68 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~ 104 (210)
|.+..+.+-.+|.+.++..+++.+|++++++.|+..+
T Consensus 153 g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 153 QKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 3344444556899999999999999999999998754
No 494
>PRK12742 oxidoreductase; Provisional
Probab=53.44 E-value=1.1e+02 Score=23.94 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=36.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHH-HHHcCCEEEEECC
Q 028372 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIV-LRALGAEIILADS 123 (210)
Q Consensus 69 ~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~-~~~~Ga~v~~v~~ 123 (210)
++.+|+..+|.-|.++|......|.++++....+ ..+.+. ....+.+.+.++-
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~~D~ 60 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS--KDAAERLAQETGATAVQTDS 60 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCC--HHHHHHHHHHhCCeEEecCC
Confidence 4778888899999999999888899877654432 222222 2445777666654
No 495
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=53.41 E-value=85 Score=26.88 Aligned_cols=83 Identities=11% Similarity=-0.008 Sum_probs=40.3
Q ss_pred EEEeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCC
Q 028372 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQF 150 (210)
Q Consensus 71 ~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (210)
.|+..+++..+..++..+- ..-.-.++++.-.-..-...++.+|.+++.++.+.++.-..+...+..++....+++...
T Consensus 90 ~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p 168 (371)
T PRK05166 90 RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNP 168 (371)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCC
Confidence 4565566566655444332 222223444443334445667889999998875321110011122222333466766544
Q ss_pred CCCh
Q 028372 151 ENPA 154 (210)
Q Consensus 151 ~n~~ 154 (210)
.||.
T Consensus 169 ~NPt 172 (371)
T PRK05166 169 SNPV 172 (371)
T ss_pred CCCC
Confidence 5554
No 496
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=53.22 E-value=65 Score=23.51 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=33.5
Q ss_pred EeeCCCchHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 028372 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (210)
Q Consensus 73 v~~ssGN~g~alA~~a~~~g~~~~vvvp~~~~~~~~~~~~~~Ga~v~~v~ 122 (210)
.....|+.|.-+|+.-++.|.+++++.... +.+.++..|-.+....
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~----~~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTLVSRSP----RLEAIKEQGLTITGPD 47 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEEEESHH----HHHHHHHHCEEEEETT
T ss_pred EEECcCHHHHHHHHHHHHCCCceEEEEccc----cHHhhhheeEEEEecc
Confidence 446789999999999888999999987744 3444666676554433
No 497
>PLN02477 glutamate dehydrogenase
Probab=53.19 E-value=70 Score=28.42 Aligned_cols=54 Identities=17% Similarity=0.051 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCcEEEEEcCC
Q 028372 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (210)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~vvvp~~ 102 (210)
-|+..+.+..+.+.--......+|+.-..||-|..+|......|.+++.+.+.+
T Consensus 186 g~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 186 GRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred hHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence 467777777665432223333668888899999999999999999999876643
No 498
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=53.02 E-value=1.4e+02 Score=25.67 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=32.7
Q ss_pred EEeeCCCchHHHHHHHHHHcCCc--EEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 028372 72 LIEVTSGNTGVGLAFIAAARGYN--LIIVMPSTCSMERRIVLRALGAEIILADS 123 (210)
Q Consensus 72 vv~~ssGN~g~alA~~a~~~g~~--~~vvvp~~~~~~~~~~~~~~Ga~v~~v~~ 123 (210)
.+..++|..|..++..+ ++++ -.|++|...-......++..|++++.++.
T Consensus 47 ~v~~~sgt~al~~~l~a--l~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~ 98 (380)
T TIGR03588 47 AVAFNSATSALHIACLA--LGVGPGDRVWTTPITFVATANCALYCGAKVDFVDI 98 (380)
T ss_pred EEEEcCHHHHHHHHHHH--cCCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEec
Confidence 34455666655544443 4442 36777776666667778889999999875
No 499
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=52.94 E-value=1.2e+02 Score=24.36 Aligned_cols=51 Identities=25% Similarity=0.217 Sum_probs=35.0
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHcCCc-EEEEEcCCCCHHHHHHHHHcC
Q 028372 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALG 115 (210)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~alA~~a~~~g~~-~~vvvp~~~~~~~~~~~~~~G 115 (210)
+.+.+.+++..+|. ..|..|.++...|+.+|.+ ++++. .++.+.+.++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~~---~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGVD---PDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEC---CCHHHHHHHHHcC
Confidence 34566777666665 5688999999999999998 54432 2444555666666
No 500
>PRK05370 argininosuccinate synthase; Validated
Probab=52.86 E-value=1.8e+02 Score=26.28 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=74.0
Q ss_pred CCCeEEEeeCCCc-hHHHHHHHHHHcCCcEEEEEcCC-C-----CHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHHHH
Q 028372 67 PGKTTLIEVTSGN-TGVGLAFIAAARGYNLIIVMPST-C-----SMERRIVLRALGA-EIILADSALRFEEILEKGEEIL 138 (210)
Q Consensus 67 ~~~~~vv~~ssGN-~g~alA~~a~~~g~~~~vvvp~~-~-----~~~~~~~~~~~Ga-~v~~v~~~~~~~~~~~~a~~~~ 138 (210)
+|++.++.+|+|. +-..+-+.-.. |++++.|.-+- - ...-.++...+|| +++.++....+.+. .. ..-
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~--~i-~aI 85 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAE--GI-AAI 85 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHH--HH-HHH
Confidence 3457677778874 44445555554 99998887542 1 1344566678899 68888864323221 12 111
Q ss_pred HhCCCeEEc----CCCCC--C-hhHHHHHHhHHHHHHHhhCCCCCEEEEc-cCchhHHHHHHHHHHhcCCCCEEEE
Q 028372 139 KKTPDGYLL----RQFEN--P-ANPKIHYETTGPEIWQDSGGKVDAFISG-IGTGGTVTGAGRFLKENNPDIKVVL 206 (210)
Q Consensus 139 ~~~~~~~~~----~~~~n--~-~~~~~g~~t~~~Ei~~q~~~~~d~vv~p-vG~Gg~~~Gi~~~~k~~~~~~~vig 206 (210)
+. +..|. +.|-. + ..|. .+....|++++. ..|+|... .|-|--..=.=.+++.+.|+.+||+
T Consensus 86 ~a--nA~Y~~~~e~~Y~l~t~LaRpl--ia~~lv~~A~~~--ga~aIAHG~TGKGNDQvRFE~~~~aL~P~l~Via 155 (447)
T PRK05370 86 QC--GAFHISTGGVTYFNTTPLGRAV--TGTMLVAAMKED--GVNIWGDGSTYKGNDIERFYRYGLLTNPELKIYK 155 (447)
T ss_pred Hc--CCccccccCccccCCCcchHHH--HHHHHHHHHHHh--CCcEEEEcCCCCCCchHHHHHHHHHhCCCCeEec
Confidence 11 22221 11111 1 1111 123334555554 46777765 4678788888888999999999985
Done!