BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028374
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0AF48|YJBQ_ECOLI UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3
SV=1
Length = 138
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 92/147 (62%), Gaps = 11/147 (7%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W QKT+TL RG HL+T +I+ ++A D+ GL HL L HTSASLT+NEN D VR
Sbjct: 2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
D E F + VP+ + +++H EG DDMP+HIKSSM G +L +P+ G++
Sbjct: 61 HDMERFFLRTVPD----------NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQ 110
Query: 183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
GTWQGIWL EHR R+++ TL G
Sbjct: 111 TGTWQGIWLGEHRIHGGSRRIIATLQG 137
>sp|P0AF49|YJBQ_ECO57 UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1
Length = 138
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 92/147 (62%), Gaps = 11/147 (7%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W QKT+TL RG HL+T +I+ ++A D+ GL HL L HTSASLT+NEN D VR
Sbjct: 2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
D E F + VP+ + +++H EG DDMP+HIKSSM G +L +P+ G++
Sbjct: 61 HDMERFFLRTVPD----------NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQ 110
Query: 183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
GTWQGIWL EHR R+++ TL G
Sbjct: 111 TGTWQGIWLGEHRIHGGSRRIIATLQG 137
>sp|O14155|YE72_SCHPO UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1
Length = 142
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 96/146 (65%), Gaps = 11/146 (7%)
Query: 65 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
Q+ +TL +G ++IT +VK++ + L F G + F+ HTSA+LTINEN+D+D R D
Sbjct: 5 QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRAD 63
Query: 125 TETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 184
L+KIVPE SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++G
Sbjct: 64 MNDILDKIVPE----------SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLG 113
Query: 185 TWQGIWLCEHRDAPTPRKVVITLNGI 210
TWQ I L E R P R +V T+ G+
Sbjct: 114 TWQDIQLAEFRRQPHSRTIVCTIIGL 139
>sp|P0A2L1|YJBQ_SALTY UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1
Length = 138
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 94/147 (63%), Gaps = 11/147 (7%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W Q+T+TL RG HLIT +I +++ L + GL HL LLHTSASLT+NEN D VR
Sbjct: 2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
D E K VP+ +A+++H EG DDMP+HIKSS+ G +L +P+ G+L
Sbjct: 61 ADMERHFLKTVPD----------NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQ 110
Query: 183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
+GTWQGIWL EHR PRK++ TL G
Sbjct: 111 LGTWQGIWLGEHRIHGGPRKIIATLQG 137
>sp|P0A2L2|YJBQ_SALTI UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1
Length = 138
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 94/147 (63%), Gaps = 11/147 (7%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W Q+T+TL RG HLIT +I +++ L + GL HL LLHTSASLT+NEN D VR
Sbjct: 2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLN 182
D E K VP+ +A+++H EG DDMP+HIKSS+ G +L +P+ G+L
Sbjct: 61 ADMERHFLKTVPD----------NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQ 110
Query: 183 MGTWQGIWLCEHRDAPTPRKVVITLNG 209
+GTWQGIWL EHR PRK++ TL G
Sbjct: 111 LGTWQGIWLGEHRIHGGPRKIIATLQG 137
>sp|P74125|Y1880_SYNY3 UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=sll1880 PE=3 SV=1
Length = 147
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 11/152 (7%)
Query: 58 ASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENY 117
A+ R Q+ + + + H KI + + Q S K GL +F+ HTSASL I EN
Sbjct: 5 AATFRQHQEILVIATQGKSLHNFNSKI-QAVVQH-SGVKTGLCTVFVRHTSASLIIQENA 62
Query: 118 DSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPIT 177
D DV D F ++VPE GR ++H+ EG DDMPAHI+S++ + IPI
Sbjct: 63 DPDVLTDLAIFFAQLVPE-------DGRR--YRHSTEGLDDMPAHIRSALTKTSEHIPIV 113
Query: 178 DGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 209
+G+L +GTWQG++L EHR P R+V++ ++G
Sbjct: 114 NGRLGLGTWQGVFLWEHRQRPHQREVIVHVSG 145
>sp|Q58481|Y1081_METJA UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ1081 PE=3 SV=1
Length = 138
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 18/131 (13%)
Query: 80 ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFV 139
ITP I+ I++ S+ K G+A +++ HT+A +TINEN D V+ D FL+ ++P+
Sbjct: 23 ITPYIISAISE--SKVKDGIAVIYVPHTTAGITINENADPSVKHDIINFLSHLIPK---- 76
Query: 140 SLLQGRSASWKHT-LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAP 198
+W T LEG D AHIKSS+ GC+ TI I DG+ +GTWQGI+ E D P
Sbjct: 77 --------NWNFTHLEGNSD--AHIKSSLVGCSQTIIIKDGKPLLGTWQGIFFAEF-DGP 125
Query: 199 TPRKVVITLNG 209
R+ + + G
Sbjct: 126 RRREFYVKIIG 136
>sp|O05243|YUGU_BACSU UPF0047 protein YugU OS=Bacillus subtilis (strain 168) GN=yugU PE=3
SV=2
Length = 132
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 19/130 (14%)
Query: 84 IVKEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSL 141
I +E+ L E G A ++ HT+A +TINEN D DV+ D +++ P
Sbjct: 18 ITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYP------- 70
Query: 142 LQGRSASWKHTLEG--PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPT 199
W+H L+ + AH+KSS G + + + +G+L +GTWQGI+ CE D P
Sbjct: 71 -------WEHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEF-DGPR 122
Query: 200 PRKVVITLNG 209
R I + G
Sbjct: 123 TRTCYIKMMG 132
>sp|O26865|Y771_METTH UPF0047 protein MTH_771 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=MTH_771 PE=3 SV=1
Length = 143
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 15/140 (10%)
Query: 72 PLR--RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFL 129
PLR R LI + + S + G+ ++F H+++++ INEN +S + D E+ L
Sbjct: 15 PLRTSRRVELIDITSMVSGVLESSGIRNGILNVFSRHSTSAIFINEN-ESRLLSDIESML 73
Query: 130 NKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGI 189
VP AS+ H ++ +H+++ + G + T+P+ +G +++GTWQ I
Sbjct: 74 EGTVPV----------DASYGHNAI-DNNADSHLRAVLLGGSQTVPVINGSMDLGTWQSI 122
Query: 190 WLCEHRDAPTPRKVVITLNG 209
+ E D P R++ +++ G
Sbjct: 123 FFAE-LDGPRNRRIRVSVAG 141
>sp|O28229|Y2050_ARCFU UPF0047 protein AF_2050 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_2050 PE=3 SV=1
Length = 126
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 15/113 (13%)
Query: 94 EFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHT- 152
E + GL ++ HT+ +L INE + + +D F+ K+VP +KH
Sbjct: 25 ESRDGLVLVYTPHTTTALVINEG-ERGLLEDILEFMEKLVP----------YGKGYKHDR 73
Query: 153 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVI 205
L+ D AH+K+++ G ++ +P+ G+L +GTWQ I E D P R+V++
Sbjct: 74 LDSNAD--AHLKATLLGNSVVVPVESGKLALGTWQRILFLEF-DGPRTRRVIV 123
>sp|P67122|Y2586_MYCBO UPF0047 protein Mb2586c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb2586c PE=3 SV=1
Length = 129
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 98 GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPD 157
GL ++F+ H +A + I E D +T + +++P R ++H
Sbjct: 28 GLCNVFVPHATAGVAIIETGAGSDEDLVDTLV-RLLP----------RDDRYRHAHGSYG 76
Query: 158 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCE 193
H+ + ++T+P++ GQ +GTWQ I L +
Sbjct: 77 HGADHLLPAFVAPSVTVPVSGGQPLLGTWQSIVLVD 112
>sp|P67121|Y2556_MYCTU UPF0047 protein Rv2556c/MT2633 OS=Mycobacterium tuberculosis
GN=Rv2556c PE=3 SV=1
Length = 129
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 98 GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRSASWKHTLEGPD 157
GL ++F+ H +A + I E D +T + +++P R ++H
Sbjct: 28 GLCNVFVPHATAGVAIIETGAGSDEDLVDTLV-RLLP----------RDDRYRHAHGSYG 76
Query: 158 DMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCE 193
H+ + ++T+P++ GQ +GTWQ I L +
Sbjct: 77 HGADHLLPAFVAPSVTVPVSGGQPLLGTWQSIVLVD 112
>sp|Q9GZS1|RPA49_HUMAN DNA-directed RNA polymerase I subunit RPA49 OS=Homo sapiens
GN=POLR1E PE=1 SV=2
Length = 481
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 166 SMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRK 202
S GCTLT+ ++G+L L E++D+ PRK
Sbjct: 80 SFLGCTLTVQFSNGKLQSPGNMRFTLYENKDSTNPRK 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,042,637
Number of Sequences: 539616
Number of extensions: 3366821
Number of successful extensions: 12871
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 12678
Number of HSP's gapped (non-prelim): 179
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)