Query 028374
Match_columns 210
No_of_seqs 162 out of 1132
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 17:20:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6c_A AQ_2013 protein; NPPSFA 100.0 3.6E-58 1.2E-62 372.0 16.7 136 61-210 1-137 (137)
2 1vmj_A Hypothetical protein TM 100.0 2.2E-56 7.5E-61 367.1 17.4 138 59-210 11-151 (151)
3 2p6h_A Hypothetical protein; s 100.0 2.4E-56 8.2E-61 360.2 15.6 133 63-210 1-134 (134)
4 1ve0_A Hypothetical protein (S 100.0 5.7E-56 1.9E-60 358.1 16.6 133 61-210 1-134 (134)
5 1vph_A Hypothetical protein SS 100.0 8.4E-56 2.9E-60 362.9 15.5 137 59-210 11-149 (149)
6 1vmf_A Hypothetical protein; s 100.0 4.2E-54 1.5E-58 351.5 17.0 131 64-210 12-145 (145)
7 1vmh_A Uncharacterized conserv 100.0 2.8E-53 9.5E-58 346.4 15.5 127 66-208 17-144 (144)
8 2cu5_A Conserved hypothetical 100.0 1.3E-51 4.4E-56 331.1 13.7 123 67-208 6-129 (129)
9 4f02_C Eukaryotic translation 20.1 29 0.00099 20.3 0.5 21 66-86 1-21 (27)
10 2qzg_A Conserved uncharacteriz 14.2 1.4E+02 0.0047 22.4 3.1 32 114-166 49-81 (94)
No 1
>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus}
Probab=100.00 E-value=3.6e-58 Score=372.05 Aligned_cols=136 Identities=29% Similarity=0.515 Sum_probs=131.5
Q ss_pred CeEEEEEEEecCCC-CeEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCcccc
Q 028374 61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFV 139 (210)
Q Consensus 61 m~~~~~titv~T~~-rg~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~ 139 (210)
|+++|++|+|+|++ ++++|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|+.||+++|+||||+
T Consensus 1 M~~~~~~i~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~---- 73 (137)
T 2p6c_A 1 MKAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLAPY---- 73 (137)
T ss_dssp CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HTCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCC----
T ss_pred CcEEEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHHCCC----
Confidence 88999999999986 5999999999999998 999999999999999999999999 999999999999999998
Q ss_pred ccccCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374 140 SLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 210 (210)
Q Consensus 140 ~~~~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge 210 (210)
+..|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+||||||| |||+|+|+|+++||
T Consensus 74 ------~~~y~H~~eg~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~d-g~r~R~v~v~i~Ge 137 (137)
T 2p6c_A 74 ------RPDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEFD-GQRPKRVVIKIIGE 137 (137)
T ss_dssp ------CTTCGGGGGTCCCHHHHHHHHHHCSEEEEEECSSSBCCCSSCEEEEEESS-CSSCEEEEEEEEEC
T ss_pred ------CCCcccCcCCCCCHHHhhhhheeCCeEEEEEECCEECcCCCceEEEEECC-CCCccEEEEEEecC
Confidence 45799999999999999999999999999999999999999999999995 89999999999997
No 2
>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1
Probab=100.00 E-value=2.2e-56 Score=367.07 Aligned_cols=138 Identities=29% Similarity=0.517 Sum_probs=131.4
Q ss_pred CCCeEEEEEEEecCC-CCeEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCcc
Q 028374 59 SNPRWAQKTVTLPPL-RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELY 137 (210)
Q Consensus 59 ~~m~~~~~titv~T~-~rg~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~ 137 (210)
-.|+-|+++|+|+|. +++|+|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|+.||+++|+||||+
T Consensus 11 ~~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-dp~v~~Dl~~~l~rlvP~-- 85 (151)
T 1vmj_A 11 HHMKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPE-- 85 (151)
T ss_dssp --CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCC--
T ss_pred hhhhceEEEEEEECCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEEcC-CccHHHHHHHHHHHhCCC--
Confidence 359999999999996 56999999999999998 999999999999999999999999 999999999999999998
Q ss_pred ccccccCCCC--CCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374 138 FVSLLQGRSA--SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 210 (210)
Q Consensus 138 ~~~~~~~~~~--~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge 210 (210)
+. .|+|+.||+|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+|+++||
T Consensus 86 --------~~~~~y~H~~eg~dn~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~-dg~r~R~V~v~i~Ge 151 (151)
T 1vmj_A 86 --------KPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEF-DGMRPKRVLVKIIGE 151 (151)
T ss_dssp --------CCGGGCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSSCEEEEEEEEEC
T ss_pred --------CCCCCcEecCcCCCchHhhhhhhhcCCeEEEEEECCEECcCCCcEEEEEEC-CCCCeeEEEEEEecC
Confidence 34 69999999999999999999999999999999999999999999999 699999999999997
No 3
>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix}
Probab=100.00 E-value=2.4e-56 Score=360.24 Aligned_cols=133 Identities=27% Similarity=0.474 Sum_probs=128.0
Q ss_pred EEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCcccccc
Q 028374 63 WAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSL 141 (210)
Q Consensus 63 ~~~~titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~ 141 (210)
++|++|+|+|++| +++|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|+.||+++|+||||+
T Consensus 1 ~~~~~i~~~t~~r~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasltinEn-dp~v~~Dl~~~l~~lvP~------ 71 (134)
T 2p6h_A 1 METGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNEA-EPRLMEDIVEFIRELTKP------ 71 (134)
T ss_dssp CEEEEEEEECCSSSEEEECHHHHHHHHHT--TTCCSEEEEEECCCSSEEEEEECC-CHHHHHHHHHHHHHHHCT------
T ss_pred CeEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHhCCC------
Confidence 3789999999876 999999999999998 999999999999999999999999 999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374 142 LQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 210 (210)
Q Consensus 142 ~~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge 210 (210)
+..|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++||
T Consensus 72 ----~~~y~H~~e-~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~-dg~r~R~v~v~i~Ge 134 (134)
T 2p6h_A 72 ----GGPWKHNLV-DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEM-DGPRERTVNLLYLGE 134 (134)
T ss_dssp ----TSSCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSCEEEEEEEEEEC
T ss_pred ----CCCccccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCceEEEEEC-CCCCceEEEEEEecC
Confidence 457999999 999999999999999999999999999999999999999 689999999999997
No 4
>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.7e-56 Score=358.06 Aligned_cols=133 Identities=30% Similarity=0.527 Sum_probs=128.2
Q ss_pred CeEEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCcccc
Q 028374 61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFV 139 (210)
Q Consensus 61 m~~~~~titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~ 139 (210)
|++++++|+|+|++| +++|||++|+++|+ |+++|+|+||++||||||+|||| ||+|+.||+++|+||||+
T Consensus 1 M~~~~~~i~~~t~~r~~~~dIT~~V~~~v~----gi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~---- 71 (134)
T 1ve0_A 1 MKIISKEFTVKTRSRFDSIDITEQVSEAIK----GINNGIAHVIVKHTTCAIIINEA-ESGLMKDFLNWAKKLVPP---- 71 (134)
T ss_dssp CEEEEEEEEEECCSSSEEEECHHHHHHHTT----TCSSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHSCT----
T ss_pred CcEEEEEEEEecCCCCeEEEChHHHHHHhc----ccCceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHHCCC----
Confidence 889999999999876 99999999999996 79999999999999999999999 999999999999999998
Q ss_pred ccccCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374 140 SLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 210 (210)
Q Consensus 140 ~~~~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge 210 (210)
+..|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++||
T Consensus 72 ------~~~y~H~~e-~dn~~AHiks~l~G~s~tipV~~G~L~LGtWQ~Iyl~E~-dg~r~R~v~v~i~Ge 134 (134)
T 1ve0_A 72 ------DGEFEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEF-DGPRTRTVLVKSMGE 134 (134)
T ss_dssp ------TSCCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSCEEEEEEEEEEC
T ss_pred ------CCCccccCC-CCChHHhhhhhccCCcEEEEEECCEeccCCCcEEEEEEC-CCCCeeEEEEEEecC
Confidence 457999999 999999999999999999999999999999999999999 789999999999997
No 5
>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1
Probab=100.00 E-value=8.4e-56 Score=362.93 Aligned_cols=137 Identities=26% Similarity=0.479 Sum_probs=130.1
Q ss_pred CCCeEEEEEEEecCCC-CeEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCcc
Q 028374 59 SNPRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELY 137 (210)
Q Consensus 59 ~~m~~~~~titv~T~~-rg~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~ 137 (210)
-.|++|+++|+|+|.+ ++|+|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|+.||+++|+||||+
T Consensus 11 ~~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-Dp~v~~Dl~~~l~rlvP~-- 85 (149)
T 1vph_A 11 HHMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEP-- 85 (149)
T ss_dssp -CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCT--
T ss_pred ceeeEEEEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHhCCC--
Confidence 4599999999999987 4999999999999998 999999999999999999999999 999999999999999998
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCC-CeEEEEEEecC
Q 028374 138 FVSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPT-PRKVVITLNGI 210 (210)
Q Consensus 138 ~~~~~~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr-~R~V~v~v~Ge 210 (210)
+..|+|+.| +|||+|||||+|+|+|++|||.||+|.|||||+||||||| +|| +|+|+|+++||
T Consensus 86 --------~~~y~H~~e-~dn~~AHiKssL~G~S~tiPV~~G~L~LGtWQgIyl~E~d-g~r~~R~v~v~i~Ge 149 (149)
T 1vph_A 86 --------SRSWKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELD-GPRSERHITVEILGE 149 (149)
T ss_dssp --------TSCCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESS-CCEEEEEEEEEEEEC
T ss_pred --------CCCccccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECC-CCCCCeEEEEEEecC
Confidence 457999988 9999999999999999999999999999999999999995 666 89999999997
No 6
>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1
Probab=100.00 E-value=4.2e-54 Score=351.50 Aligned_cols=131 Identities=37% Similarity=0.566 Sum_probs=123.6
Q ss_pred EEEEEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccccccc
Q 028374 64 AQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLL 142 (210)
Q Consensus 64 ~~~titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~~ 142 (210)
+.++|+|.|.++ +++|||++|+++|++ |||++|+|+||++||||||+|||||||+|+.||+++|+||||+
T Consensus 12 ~~~~l~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~------- 82 (145)
T 1vmf_A 12 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPW------- 82 (145)
T ss_dssp CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCS-------
T ss_pred ceeEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhcCC-------
Confidence 468999999755 999999999999998 9999999999999999999999999999999999999999998
Q ss_pred cCCCC-CCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCC-CeEEEEEEecC
Q 028374 143 QGRSA-SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPT-PRKVVITLNGI 210 (210)
Q Consensus 143 ~~~~~-~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr-~R~V~v~v~Ge 210 (210)
+. .|+| .|| ||+|||||+|+|+|++|||.||+|.|||||+|||||| |+|| +|+|+|+++||
T Consensus 83 ---~~~~y~H-~EG--n~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~-dgpr~~R~v~v~i~Ge 145 (145)
T 1vmf_A 83 ---HHENDRH-MEG--NTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEF-DGPRTNRKFVVKLLTD 145 (145)
T ss_dssp ---CCTTCCC-TTS--CHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEES-SCCCSCEEEEEEEEEC
T ss_pred ---CCCCcCc-CCC--CHHHHHHHHhhCCeEEEEEECCEEccCCCceEEEEEC-cCCCCCcEEEEEEecC
Confidence 34 7999 565 8999999999999999999999999999999999999 5899 99999999997
No 7
>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A
Probab=100.00 E-value=2.8e-53 Score=346.35 Aligned_cols=127 Identities=37% Similarity=0.575 Sum_probs=120.9
Q ss_pred EEEEecCCC-CeEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccccccccC
Q 028374 66 KTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQG 144 (210)
Q Consensus 66 ~titv~T~~-rg~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~~~~ 144 (210)
++|+|+|.+ ++++|||++|+++|++ ||+++|+|+||++||||||+|||||||+|+.||+++|+||||+
T Consensus 17 ~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~--------- 85 (144)
T 1vmh_A 17 IEYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPK--------- 85 (144)
T ss_dssp CEEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCS---------
T ss_pred EEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCC---------
Confidence 579999985 5999999999999998 9999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028374 145 RSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN 208 (210)
Q Consensus 145 ~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~ 208 (210)
+..|+|+ +|||+|||||+|+|+|++|||.||+|.|||||+|||||| |+||+|+|+|+++
T Consensus 86 -~~~y~H~---~dn~~AHikssL~G~S~tiPV~~GrL~LGtWQgIyl~E~-dgpr~R~v~v~i~ 144 (144)
T 1vmh_A 86 -VGDYKHV---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKII 144 (144)
T ss_dssp -SSSCCCT---TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEES-SCSCEEEEEEEEC
T ss_pred -CCCcccC---CCCchHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEEC-CCCceeEEEEEEC
Confidence 4569997 789999999999999999999999999999999999999 6899999999985
No 8
>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-51 Score=331.07 Aligned_cols=123 Identities=33% Similarity=0.546 Sum_probs=114.8
Q ss_pred EEEecCCCCeEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccccccccCCC
Q 028374 67 TVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGRS 146 (210)
Q Consensus 67 titv~T~~rg~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~~~~~~ 146 (210)
+|+|++++++++|||++|+++|++ ++|+|+||++||||||+|||||||+|++||+++|+||+|+ +
T Consensus 6 ~i~~~~~~~~~~dIT~~V~~~v~~-----~~Gl~~vf~~HTTasltinEnadp~v~~Dl~~~l~~lvP~----------~ 70 (129)
T 2cu5_A 6 RLEVPTPEEGFVNITRKVEAALSG-----HTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPR----------H 70 (129)
T ss_dssp EEEEEECSSEEEECHHHHHHTSTT-----CCEEEEEECCCSSEEEEEECCSSHHHHHHHHHHHHHHSCS----------C
T ss_pred EEEEeCCCCeEEECHHHHHHHhhh-----cCcEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCC----------C
Confidence 577776677999999999999963 8999999999999999999999999999999999999998 4
Q ss_pred -CCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028374 147 -ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN 208 (210)
Q Consensus 147 -~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~ 208 (210)
..|+| .|| ||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++
T Consensus 71 ~~~y~H-~eG--n~~AHiks~L~G~s~tiPV~~G~L~LGtWQ~Iyl~E~-dg~r~R~v~v~i~ 129 (129)
T 2cu5_A 71 RPQDRH-LEG--NSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEF-DGPRVREVWVRLL 129 (129)
T ss_dssp CTTCCC-TTS--CHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSEEEEEEEEEC
T ss_pred CCCcCc-CCC--CHHHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEEC-CCCceeEEEEEEC
Confidence 57999 565 8999999999999999999999999999999999999 6899999999985
No 9
>4f02_C Eukaryotic translation initiation factor 4 gamma; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens}
Probab=20.13 E-value=29 Score=20.33 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=15.7
Q ss_pred EEEEecCCCCeEEeccHHHHH
Q 028374 66 KTVTLPPLRRGCHLITPKIVK 86 (210)
Q Consensus 66 ~titv~T~~rg~~dIT~eV~~ 86 (210)
++|.++-...|--|||+++..
T Consensus 1 k~irirdpnqggkditeeims 21 (27)
T 4f02_C 1 KTIRIRDPNQGGKDITEEIMS 21 (27)
T ss_pred CcceecCccccchhhHHHHHh
Confidence 356777777788899998764
No 10
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=14.16 E-value=1.4e+02 Score=22.39 Aligned_cols=32 Identities=28% Similarity=0.479 Sum_probs=20.9
Q ss_pred eccCCchhHH-HHHHHHHHhCCCccccccccCCCCCCCCCCCCCCCchhhhhhh
Q 028374 114 NENYDSDVRD-DTETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSS 166 (210)
Q Consensus 114 nEn~Dp~v~~-Dl~~~L~rLvP~~~~~~~~~~~~~~Y~H~~eG~dn~~AHIKss 166 (210)
||..+|+|+. .....|+.+.- |-|||.|.|+.
T Consensus 49 ~e~~~~~vRAAtAIs~LDeISn---------------------DPNmP~htRT~ 81 (94)
T 2qzg_A 49 NEEQELIVRSATAIQYLDDISE---------------------DPNMPIHTRTQ 81 (94)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTT---------------------CTTCCHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHhhc---------------------CCCCChHHHHH
Confidence 4555677754 55566666652 44899999954
Done!