Query 028374
Match_columns 210
No_of_seqs 162 out of 1132
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 17:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028374.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028374hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vmja_ d.273.1.1 (A:) Hypothe 100.0 1.7E-56 1.2E-60 361.2 17.0 138 61-210 1-139 (139)
2 d1vmfa_ d.273.1.1 (A:) Hypothe 100.0 3.9E-53 2.8E-57 340.3 17.2 132 64-210 3-136 (136)
3 d1vpha_ d.273.1.1 (A:) Hypothe 100.0 2.7E-53 2E-57 341.7 15.2 137 60-210 1-138 (138)
4 d1vmha_ d.273.1.1 (A:) B.subti 100.0 4.6E-52 3.4E-56 331.7 15.8 126 67-208 3-129 (129)
5 d1pffa_ c.67.1.3 (A:) Methioni 23.5 29 0.0021 28.3 3.7 32 93-133 300-331 (331)
6 d2qmwa2 d.58.18.3 (A:185-264) 16.1 41 0.003 21.9 2.4 19 111-130 6-24 (80)
7 d2hq2a1 e.62.1.1 (A:1-337) Hem 14.3 66 0.0048 26.9 3.8 31 177-208 97-127 (337)
8 d2drpa2 g.37.1.1 (A:140-165) T 14.1 10 0.00076 20.6 -1.0 10 156-165 14-23 (26)
9 d2qsba1 a.29.14.1 (A:2-86) Unc 13.9 53 0.0039 22.4 2.5 33 114-167 41-74 (85)
10 d2qzga1 a.29.14.1 (A:4-91) Unc 13.1 74 0.0054 21.8 3.1 33 114-167 43-76 (88)
No 1
>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=1.7e-56 Score=361.24 Aligned_cols=138 Identities=29% Similarity=0.507 Sum_probs=132.2
Q ss_pred CeEEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCcccc
Q 028374 61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFV 139 (210)
Q Consensus 61 m~~~~~titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~ 139 (210)
|++++++|+++|+++ +++|||++|+++|++ |||++|+|+||++||||||+|||| ||+|+.||+++|++|||+
T Consensus 1 M~~~~~~i~~~T~~~~~~~dIT~~v~~~v~~--s~i~~Giv~vf~~HTTasl~inE~-dp~~~~Dl~~~l~~lvP~---- 73 (139)
T d1vmja_ 1 MKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPE---- 73 (139)
T ss_dssp CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCC----
T ss_pred CCcEEEEEEEECCCCCEEEEChHHHHHHHHH--hCCceEEEEEEeCCCceEEEEecC-chhHHhhHHHHHHHhhcc----
Confidence 899999999999876 999999999999999 999999999999999999999999 999999999999999998
Q ss_pred ccccCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374 140 SLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 210 (210)
Q Consensus 140 ~~~~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge 210 (210)
++...|+|+.+|+|||+|||||+|+|+|++|||.||+|.||+||+|||||| |+||+|+|+|+++||
T Consensus 74 ----~~~~~y~H~~~g~dn~~aHiks~l~g~s~tipi~~G~L~LGtWQ~I~l~E~-dg~r~R~v~v~iiGE 139 (139)
T d1vmja_ 74 ----KPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEF-DGMRPKRVLVKIIGE 139 (139)
T ss_dssp ----CCGGGCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSSCEEEEEEEEEC
T ss_pred ----CCccccCcCCccCCCcHHHHHHhhhCCeEEEEEECCEECccCCCEEEEEEC-cCCCceEEEEEEEcC
Confidence 222579999999999999999999999999999999999999999999999 699999999999997
No 2
>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus halodurans [TaxId: 86665]}
Probab=100.00 E-value=3.9e-53 Score=340.33 Aligned_cols=132 Identities=34% Similarity=0.491 Sum_probs=122.3
Q ss_pred EEEEEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccccccc
Q 028374 64 AQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLL 142 (210)
Q Consensus 64 ~~~titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~~ 142 (210)
|+++|+|+|.+| +++|||++|+++|++ |||++|+|+||++||||||+||||+||+|+.||+++|++++|+
T Consensus 3 ~~~~~~~~T~~~~~~idIT~~V~~~v~~--sgi~~G~v~vf~~HTTasl~inEn~dp~v~~Dl~~~l~~l~P~------- 73 (136)
T d1vmfa_ 3 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPW------- 73 (136)
T ss_dssp CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCS-------
T ss_pred cEEEEEEEECCCCeEEEChHHHHHHHHH--cCCcceEEEEEeCCCceEEEEecCCCccHHHHHHHHHhccCCc-------
Confidence 689999999888 799999999999999 9999999999999999999999999999999999999999997
Q ss_pred cCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCC-CeEEEEEEecC
Q 028374 143 QGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPT-PRKVVITLNGI 210 (210)
Q Consensus 143 ~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr-~R~V~v~v~Ge 210 (210)
+..|.| +++|||+|||||+|+|+|++|||.||+|.||+||+||||||| +|| +|+|+|+++||
T Consensus 74 ---~~~~~~--~~~~n~~aHlks~l~g~s~tiPv~~G~L~LGtWQ~I~l~E~d-~~r~~R~v~v~iiGe 136 (136)
T d1vmfa_ 74 ---HHENDR--HMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFD-GPRTNRKFVVKLLTD 136 (136)
T ss_dssp ---CCTTCC--CTTSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESS-CCCSCEEEEEEEEEC
T ss_pred ---ccccce--eccCChHHHHHhhhcCCeEEEEEECCEECccCccEEEEEEcc-CCCCceEEEEEEecC
Confidence 223333 478899999999999999999999999999999999999995 555 79999999997
No 3
>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=2.7e-53 Score=341.70 Aligned_cols=137 Identities=25% Similarity=0.454 Sum_probs=129.0
Q ss_pred CCeEEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccc
Q 028374 60 NPRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYF 138 (210)
Q Consensus 60 ~m~~~~~titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~ 138 (210)
+|++++++|+|+|.++ +++|||++|+++|++ |||++|+|+||++||||||+|||| ||++++|++++|++++|+
T Consensus 1 ~M~~~~~~i~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~i~En-~~~~~~d~~~~l~~~~p~--- 74 (138)
T d1vpha_ 1 HMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEP--- 74 (138)
T ss_dssp CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCT---
T ss_pred CCceEEEEEEEEECCCCEEEECHHHHHHHHHH--cCCCccEEEEEeCCCeeEEEEEcc-hhhhHHHHHHhhhhhccc---
Confidence 5999999999999888 999999999999999 999999999999999999999998 889999999999999998
Q ss_pred cccccCCCCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028374 139 VSLLQGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 210 (210)
Q Consensus 139 ~~~~~~~~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge 210 (210)
+..|.|+ +++|||+|||||+|+|+|++|||.||+|.||+||+|||||||..+++|+|+|+++||
T Consensus 75 -------~~~y~h~-~~~dn~~aHiks~L~g~s~tipi~dG~L~LGtWQ~I~l~E~d~~~~~R~v~v~i~GE 138 (138)
T d1vpha_ 75 -------SRSWKHN-LIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE 138 (138)
T ss_dssp -------TSCCGGG-GTCSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCCEEEEEEEEEEEEC
T ss_pred -------cCcccee-cCCCChHHHHHhhhcCCeEEEEEECCEECccCccEEEEEECcCCCCceEEEEEEEeC
Confidence 5679996 479999999999999999999999999999999999999995444479999999997
No 4
>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium acetobutylicum [TaxId: 1488]}
Probab=100.00 E-value=4.6e-52 Score=331.69 Aligned_cols=126 Identities=37% Similarity=0.585 Sum_probs=119.9
Q ss_pred EEEecCCCC-eEEeccHHHHHHHHhhccCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhCCCccccccccCC
Q 028374 67 TVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPELYFVSLLQGR 145 (210)
Q Consensus 67 titv~T~~r-g~~dIT~eV~~~V~~~~SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLvP~~~~~~~~~~~ 145 (210)
+|+|+|+++ +|+|||++|+++|++ ||+++|+|+||++||||||+||||+||+|+.||+++|++|||+
T Consensus 3 e~t~~T~~~~~~idIT~~V~~~v~~--s~i~~G~v~vf~~HTTasl~inEn~dp~v~~Dl~~~l~~lvP~---------- 70 (129)
T d1vmha_ 3 EYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPK---------- 70 (129)
T ss_dssp EEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCS----------
T ss_pred EEEEEcCCCCEEEEChHHHHHHHHH--cCCcceEEEEEeCCceEEEEEcccCCcchHHHHHHHHHhcCCC----------
Confidence 589999877 799999999999999 9999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028374 146 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN 208 (210)
Q Consensus 146 ~~~Y~H~~eG~dn~~AHIKssL~G~SltIPV~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~ 208 (210)
+.+|+|. ++||+||+||+|+|+|++|||.||+|.||+||+|||||| |+||+|+|.|+++
T Consensus 71 ~~~y~H~---~~n~~aHiks~l~g~s~tiPi~~G~L~LGtWQ~I~l~E~-d~~r~R~v~v~ii 129 (129)
T d1vmha_ 71 VGDYKHV---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKII 129 (129)
T ss_dssp SSSCCCT---TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEES-SCSCEEEEEEEEC
T ss_pred CCCCccc---cCcchhhhhhHhcCCeEEEEEECCEECcCCccEEEEEEC-cCCceeEEEEEEC
Confidence 5679995 569999999999999999999999999999999999999 6899999999986
No 5
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}
Probab=23.54 E-value=29 Score=28.32 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=25.9
Q ss_pred cCcccceEEEEecccceEEEEeccCCchhHHHHHHHHHHhC
Q 028374 93 SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133 (210)
Q Consensus 93 SgI~~Glv~Vf~~HTTAsLtInEn~Dp~v~~Dl~~~L~rLv 133 (210)
.||..|++-+++= .|+ -.|+..||+++|+++.
T Consensus 300 ~Gi~~~liRlsvG--------lE~-~~DLi~Dl~~AL~~il 331 (331)
T d1pffa_ 300 AGLTDNLIRLSVG--------CEN-VQDIIDDLKQALDLVL 331 (331)
T ss_dssp TTCCTTEEEEECC--------SSC-HHHHHHHHHHHHHTC-
T ss_pred cCCCcCeEEEEee--------eCC-HHHHHHHHHHHHHHhC
Confidence 7999999998762 376 5689999999999863
No 6
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=16.08 E-value=41 Score=21.92 Aligned_cols=19 Identities=5% Similarity=0.022 Sum_probs=14.4
Q ss_pred EEEeccCCchhHHHHHHHHH
Q 028374 111 LTINENYDSDVRDDTETFLN 130 (210)
Q Consensus 111 LtInEn~Dp~v~~Dl~~~L~ 130 (210)
++..+| .|+.+.|+...|.
T Consensus 6 i~~~~d-~pGaL~~vL~~F~ 24 (80)
T d2qmwa2 6 ITPMHD-KPGLLASVLNTFA 24 (80)
T ss_dssp EEESSC-CTTHHHHHHHHHH
T ss_pred EEeCCC-CCCHHHHHHHHHH
Confidence 344465 7999999988887
No 7
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli O157:H7 [TaxId: 83334]}
Probab=14.26 E-value=66 Score=26.87 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=22.3
Q ss_pred eCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028374 177 TDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN 208 (210)
Q Consensus 177 ~dGkL~LGtWQ~I~l~E~~dgpr~R~V~v~v~ 208 (210)
.|++|-++.|..+|+++- ...+.-+-.+|+.
T Consensus 97 IdLRlf~~~w~~~faV~~-~~~~g~~~SlQFF 127 (337)
T d2hq2a1 97 LDLRLFLNQWASVFHIKE-NTARGERQSIQFF 127 (337)
T ss_dssp CCEEECGGGEEEEEEEEE-CCTTSCEEEEEEE
T ss_pred eeEEEEhhhccEEEEEEe-cCCCCceeeEEEE
Confidence 589999999999999995 4333334455553
No 8
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}
Probab=14.11 E-value=10 Score=20.61 Aligned_cols=10 Identities=50% Similarity=0.787 Sum_probs=8.3
Q ss_pred CCCchhhhhh
Q 028374 156 PDDMPAHIKS 165 (210)
Q Consensus 156 ~dn~~AHIKs 165 (210)
.|||.||+|-
T Consensus 14 kdnm~ahvki 23 (26)
T d2drpa2 14 KDNMTAHVKI 23 (26)
T ss_dssp HHHHHHHHHH
T ss_pred ccCceEEEEE
Confidence 5799999984
No 9
>d2qsba1 a.29.14.1 (A:2-86) Uncharacterized protein Ta0600 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=13.86 E-value=53 Score=22.42 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=21.7
Q ss_pred eccCCchhHHH-HHHHHHHhCCCccccccccCCCCCCCCCCCCCCCchhhhhhhc
Q 028374 114 NENYDSDVRDD-TETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSM 167 (210)
Q Consensus 114 nEn~Dp~v~~D-l~~~L~rLvP~~~~~~~~~~~~~~Y~H~~eG~dn~~AHIKssL 167 (210)
||..+++|+.. ....|+.+.- |-|||.|.|+.+
T Consensus 41 n~~~~~~vRaa~ais~LdeIs~---------------------DPNmP~h~RT~i 74 (85)
T d2qsba1 41 QENESLDLRCATVLSMLDEMAN---------------------DPNVPAHGRTDL 74 (85)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHT---------------------CTTSCHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHhhc---------------------CCCCChHHHHHH
Confidence 45566777653 3455666552 448999999865
No 10
>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188 {Methanococcus maripaludis [TaxId: 39152]}
Probab=13.07 E-value=74 Score=21.77 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=22.5
Q ss_pred eccCCchhHHHH-HHHHHHhCCCccccccccCCCCCCCCCCCCCCCchhhhhhhc
Q 028374 114 NENYDSDVRDDT-ETFLNKIVPELYFVSLLQGRSASWKHTLEGPDDMPAHIKSSM 167 (210)
Q Consensus 114 nEn~Dp~v~~Dl-~~~L~rLvP~~~~~~~~~~~~~~Y~H~~eG~dn~~AHIKssL 167 (210)
||..+++|+... ...|+.+.- |-|||.|.|+.+
T Consensus 43 n~~~~~~vRaa~ais~LDeIs~---------------------DPNmP~h~Rt~i 76 (88)
T d2qzga1 43 NEEQELIVRSATAIQYLDDISE---------------------DPNMPIHTRTQI 76 (88)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTT---------------------CTTCCHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHhhc---------------------CCCCCcHHHHHH
Confidence 566677776643 455776652 448999999875
Done!