Your job contains 1 sequence.
>028375
MAWVTNAAAATTATNLFVPKSSCAYWYWSSNNYKNELRLSRRTGSVGLVYCSSHSSNTAN
NNDKNKGVPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSDNTSSTFI
SWYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSR
ITDPVAAAEEIAFCKACARFGLGLYLYHEE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028375
(210 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2160967 - symbol:RAD52-2 "AT5G47870" species:3... 599 2.5e-58 1
TAIR|locus:2032313 - symbol:RAD52-1 "radiation sensitive ... 335 2.3e-30 1
>TAIR|locus:2160967 [details] [associations]
symbol:RAD52-2 "AT5G47870" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] EMBL:CP002688
GO:GO:0009507 EMBL:AB016886 GO:GO:0000724 EMBL:BT024916
EMBL:AK175664 IPI:IPI00533632 RefSeq:NP_199598.1 UniGene:At.26615
UniGene:At.63891 PRIDE:Q9FIJ4 EnsemblPlants:AT5G47870.1
GeneID:834838 KEGG:ath:AT5G47870 TAIR:At5g47870 InParanoid:Q9FIJ4
OMA:GMTRPLV PhylomeDB:Q9FIJ4 ProtClustDB:CLSN2683003
ArrayExpress:Q9FIJ4 Genevestigator:Q9FIJ4 Uniprot:Q9FIJ4
Length = 199
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 127/201 (63%), Positives = 153/201 (76%)
Query: 16 LFVPKSSCAYWYWSSNNYKNELRLSR-RTGSVGL-VYCSSHSSNTANNNDKNKGVPNSNY 73
L V ++S A+ S + ++LS RT +V V CS + K K VPNSNY
Sbjct: 3 LQVQQTSAAFTISSPSTAAARIKLSPFRTVAVNRGVRCSGGGVG-GGDAGKKKAVPNSNY 61
Query: 74 VVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSD--NTS---STFISWYNANRM 128
VVP++K FSS++S +TRPL+EILRDLNK+IPDNI+ D +TS S FI WY+ANRM
Sbjct: 62 VVPIDK-FSSSSS--ITRPLIEILRDLNKKIPDNIVKSHDPPSTSAATSGFIPWYHANRM 118
Query: 129 LSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAA 188
LSFYAPGWCGEVRDVIFSENG+VTVVYR+T+RGSDGEAHRE+TGTV+++D I DPV AA
Sbjct: 119 LSFYAPGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAA 178
Query: 189 EEIAFCKACARFGLGLYLYHE 209
EEIAFC+ACARFGLGLYLYHE
Sbjct: 179 EEIAFCRACARFGLGLYLYHE 199
>TAIR|locus:2032313 [details] [associations]
symbol:RAD52-1 "radiation sensitive 51-1" species:3702
"Arabidopsis thaliana" [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0050897 "cobalt ion binding" evidence=IDA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006281 "DNA repair" evidence=IMP]
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005634
GO:GO:0003690 GO:GO:0003697 GO:GO:0050897 GO:GO:0000724
EMBL:AC016162 ProtClustDB:CLSN2683003 EMBL:AY128372 EMBL:BT000380
IPI:IPI00521011 PIR:H96737 RefSeq:NP_177287.1 RefSeq:NP_849876.1
UniGene:At.70183 PaxDb:Q9FVV7 PRIDE:Q9FVV7
EnsemblPlants:AT1G71310.1 EnsemblPlants:AT1G71310.2 GeneID:843472
KEGG:ath:AT1G71310 TAIR:At1g71310 eggNOG:NOG149928
HOGENOM:HOG000240561 InParanoid:Q9FVV7 OMA:NIHAPEW PhylomeDB:Q9FVV7
ArrayExpress:Q9FVV7 Genevestigator:Q9FVV7 Uniprot:Q9FVV7
Length = 176
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 66/128 (51%), Positives = 90/128 (70%)
Query: 86 SSYMTRPLVEILRDLNKRIPDNIINP--SDNTSSTFISWYNANRMLSFYAPGWCGEVRDV 143
+S ++RPL EIL++LNK++PD++I D S +I W+ NR+++ +AP W GEVR V
Sbjct: 47 TSGISRPLAEILKELNKKVPDSVIRTRVEDGCSIKYIPWHIVNRIMNMHAPEWSGEVRSV 106
Query: 144 IFSENGS-VTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGL 202
+S +G+ VTV YRVTL G+D E RE+TGT S D D V AE +AF +ACARFGL
Sbjct: 107 TYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACARFGL 166
Query: 203 GLYLYHEE 210
GL+LYHE+
Sbjct: 167 GLHLYHED 174
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.129 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 210 199 0.00085 111 3 11 22 0.37 33
31 0.45 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 595 (63 KB)
Total size of DFA: 182 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.06u 0.14s 22.20t Elapsed: 00:00:01
Total cpu time: 22.06u 0.14s 22.20t Elapsed: 00:00:01
Start: Fri May 10 17:05:40 2013 End: Fri May 10 17:05:41 2013