BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028375
         (210 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GLF|A Chain A, Crystal Structure Of Methylthioadenosine Phosphorylase
           Sourced From An Antarctic Soil Metagenomic Library
 pdb|4GLJ|A Chain A, Crystal Structure Of Methylthioadenosine Phosphorylase In
           Complex With Rhodamine B
          Length = 297

 Score = 30.8 bits (68), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 93  LVEILRDLNKRIPDNIINPSDNTSSTFISWYNANRMLSFYAPGWCGEVRDVIFS--ENGS 150
           L E L+ L+  IPD +I+ +    STF     A   +S   P  C EV D++    +N  
Sbjct: 102 LQETLKPLDMVIPDQMIDMTKQRVSTFFG-DGAVAHVSMADP-LCPEVADILIRAYDNAD 159

Query: 151 VTVVYRVTLRGSDGEAHREAT 171
           +          +DG+ H +AT
Sbjct: 160 I----------ADGQCHAKAT 170


>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
           Abcb10 (plate Form)
          Length = 619

 Score = 30.0 bits (66), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 15/82 (18%)

Query: 63  DKNKGVPNSNYVVPLEKSFSSA------NSSYMTRPLVEILRDLNKRIPDN----IINPS 112
           ++   +P +  V+  EKSF  A      + +Y  RP V I +D +  IP      ++ PS
Sbjct: 351 EREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPS 410

Query: 113 DNTSSTFISWYNANRMLSFYAP 134
            +  ST +S      +L  Y P
Sbjct: 411 GSGKSTVLSL-----LLRLYDP 427


>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
           Abcb10
 pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
           Abcb10 (Rod Form B)
 pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
           Abcb10 (nucleotide-free Form)
          Length = 595

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 15/82 (18%)

Query: 63  DKNKGVPNSNYVVPLEKSFSSA------NSSYMTRPLVEILRDLNKRIPDN----IINPS 112
           ++   +P +  V+  EKSF  A      + +Y  RP V I +D +  IP      ++ PS
Sbjct: 320 EREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPS 379

Query: 113 DNTSSTFISWYNANRMLSFYAP 134
            +  ST +S      +L  Y P
Sbjct: 380 GSGKSTVLSL-----LLRLYDP 396


>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap
           Domain
          Length = 301

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 89  MTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANRMLSFYAPGWCGEVRDVIFSEN 148
           ++R L +  RDL   + +N I+PS   +  F++ + +      ++ G+   V D+IF + 
Sbjct: 189 LSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTLFASQ-----FSLGFVARVFDIIFLQG 243

Query: 149 GSVTVVYRVTL 159
               V+++V L
Sbjct: 244 TE--VIFKVAL 252


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,127,034
Number of Sequences: 62578
Number of extensions: 237883
Number of successful extensions: 651
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 12
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)