BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028375
         (210 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5R5M1|PRDM4_PONAB PR domain zinc finger protein 4 OS=Pongo abelii GN=PRDM4 PE=2 SV=1
          Length = 801

 Score = 34.3 bits (77), Expect = 0.56,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 67  GVPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSD-----NTSSTFIS 121
           G+P  NY +P    +    SSY    L  IL  L  R P   I+P+      NT+ +  +
Sbjct: 84  GLPERNYTLP-PPPYPHLESSYFRTILPGILSYLADRPPPQYIHPNSINVDGNTALSITN 142

Query: 122 WYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRI 181
             NA+ +  + + G  G    ++  ++ SV      +L  SDG      T     + SR+
Sbjct: 143 --NASALDPYQSNGNVGLEPGIVSIDSRSVNTHGAQSLHPSDGHEVALDTAITMENVSRV 200

Query: 182 TDPVAA---AEEI 191
           T P++    AEE+
Sbjct: 201 TSPISTDGMAEEL 213


>sp|Q5P5G3|APCB_AROAE Acetophenone carboxylase beta subunit OS=Aromatoleum aromaticum
           (strain EbN1) GN=apc2 PE=1 SV=1
          Length = 129

 Score = 34.3 bits (77), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 9/107 (8%)

Query: 80  SFSSANSSYMTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANRMLSFYAPGWCGE 139
              SA  SY    LV       +R P  I NP      +F    N  R+L FY PG   +
Sbjct: 28  KLISARESYKKGCLV------AERRPHEIHNPVIEGEYSFAPDENWVRILEFYCPGCTRQ 81

Query: 140 VRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVA 186
           +          +TV   V +   D    R   G +   D ++T P A
Sbjct: 82  IETEYLPPGHPITVDIEVDI---DSLKARLKKGVIVIKDGKLTKPEA 125


>sp|Q6ZMT4|KDM7_HUMAN Lysine-specific demethylase 7 OS=Homo sapiens GN=JHDM1D PE=1 SV=2
          Length = 941

 Score = 33.1 bits (74), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 64  KNKGVPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNI 108
           K++G+P    V P+ +S + A S Y +R  +  LRD N R P N+
Sbjct: 484 KSQGIP---IVCPVSRSSNEATSPYHSRRKMRKLRDHNVRTPSNL 525


>sp|Q9UKN5|PRDM4_HUMAN PR domain zinc finger protein 4 OS=Homo sapiens GN=PRDM4 PE=1 SV=3
          Length = 801

 Score = 32.3 bits (72), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 67  GVPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSD-----NTSSTFIS 121
           G+P  NY +P    +    SSY    L  IL  L  R P   I+P+      NT+ +  +
Sbjct: 84  GLPERNYTLP-PPPYPHLESSYFRTILPGILSYLADRPPPQYIHPNSINVDGNTALSITN 142

Query: 122 WYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRI 181
             N + +  + + G  G    ++  ++ SV      +L  SDG      T     + SR+
Sbjct: 143 --NPSALDPYQSNGNVGLEPGIVSIDSRSVNTHGAQSLHPSDGHEVALDTAITMENVSRV 200

Query: 182 TDPVAA---AEEI 191
           T P++    AEE+
Sbjct: 201 TSPISTDGMAEEL 213


>sp|Q9C7F2|AB14B_ARATH ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14
            PE=3 SV=1
          Length = 1247

 Score = 31.6 bits (70), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 11/72 (15%)

Query: 69   PNSNYVVPLEK--SFSSANSSYMTRPLVEILRDLNKRIPDN----IINPSDNTSSTFISW 122
            PNS  V  ++    F + + +Y TRP + I ++LN R+       ++ PS +  ST I  
Sbjct: 994  PNSRLVTHIKGDIEFRNVSFAYPTRPEIAIFKNLNLRVSAGKSLAVVGPSGSGKSTVIGL 1053

Query: 123  YNANRMLSFYAP 134
                 ++ FY P
Sbjct: 1054 -----IMRFYDP 1060


>sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13
            PE=3 SV=1
          Length = 1245

 Score = 31.2 bits (69), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 11/72 (15%)

Query: 69   PNSNYVVPLEKSFSSANSS--YMTRPLVEILRDLNKRIPDN----IINPSDNTSSTFISW 122
            PNS  V  ++      N S  Y TRP ++I ++LN R+       ++ PS +  ST I  
Sbjct: 992  PNSRMVSQVKGDIEFRNVSFVYPTRPEIDIFKNLNLRVSAGKSLAVVGPSGSGKSTVIGL 1051

Query: 123  YNANRMLSFYAP 134
                 ++ FY P
Sbjct: 1052 -----IMRFYDP 1058


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.127    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,622,161
Number of Sequences: 539616
Number of extensions: 3117285
Number of successful extensions: 25045
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 23417
Number of HSP's gapped (non-prelim): 1464
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)