Query 028375
Match_columns 210
No_of_seqs 47 out of 49
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 10:32:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4712 Uncharacterized protei 99.7 2.5E-17 5.5E-22 143.1 5.8 105 93-208 3-118 (234)
2 PF04098 Rad52_Rad22: Rad52/22 99.7 2.5E-17 5.4E-22 132.5 5.1 114 93-209 2-138 (154)
3 PF06378 DUF1071: Protein of u 99.1 3.1E-10 6.8E-15 95.3 8.6 89 115-208 20-127 (164)
4 TIGR00607 rad52 recombination 99.0 1.5E-09 3.1E-14 91.3 7.5 112 95-209 1-132 (161)
5 PF06420 Mgm101p: Mitochondria 98.7 1.1E-07 2.4E-12 80.8 9.7 112 94-209 17-131 (171)
6 PHA02448 hypothetical protein 97.9 2.8E-05 6.1E-10 66.1 6.3 112 89-208 1-120 (192)
7 COG5055 RAD52 Recombination DN 97.8 3.8E-05 8.3E-10 71.4 6.3 114 93-209 26-160 (375)
8 KOG4141 DNA repair and recombi 95.5 0.033 7.1E-07 49.6 6.0 108 94-205 37-163 (222)
9 PF10698 DUF2505: Protein of u 67.2 32 0.0007 27.6 7.2 60 136-197 89-148 (159)
10 PF05504 Spore_GerAC: Spore ge 57.8 14 0.00031 28.9 3.5 58 147-208 64-134 (171)
11 PRK10860 tRNA-specific adenosi 50.5 29 0.00063 29.1 4.4 26 182-207 57-86 (172)
12 PF03147 FDX-ACB: Ferredoxin-f 50.4 36 0.00079 25.1 4.5 51 120-170 18-73 (94)
13 cd01684 Tet_like_IV EF-G_domai 50.2 35 0.00076 26.2 4.5 41 149-200 74-114 (115)
14 cd01285 nucleoside_deaminase N 45.1 39 0.00084 25.5 4.0 26 182-207 42-71 (109)
15 PHA03385 IX capsid protein IX, 43.6 12 0.00026 31.5 1.1 45 129-178 16-60 (135)
16 COG1036 Archaeal flavoproteins 42.1 15 0.00032 32.4 1.5 95 94-194 26-123 (187)
17 PF00996 GDI: GDP dissociation 39.5 19 0.0004 34.6 1.8 18 188-206 233-250 (438)
18 smart00358 DSRM Double-strande 39.2 94 0.002 20.1 4.7 12 150-161 29-40 (67)
19 PF04881 Adeno_GP19K: Adenovir 37.1 51 0.0011 28.0 3.8 14 154-167 49-62 (139)
20 PF12680 SnoaL_2: SnoaL-like d 36.8 1.2E+02 0.0027 20.0 5.2 27 132-159 49-75 (102)
21 PF07366 SnoaL: SnoaL-like pol 35.9 1E+02 0.0022 22.6 4.9 34 126-162 47-80 (126)
22 PRK00907 hypothetical protein; 34.3 59 0.0013 25.2 3.5 39 124-162 33-72 (92)
23 cd01693 mtEFG2_like_IV mtEF-G2 31.4 1.1E+02 0.0024 23.1 4.6 41 149-201 80-120 (120)
24 COG2353 Uncharacterized conser 31.2 92 0.002 26.5 4.6 32 133-164 100-131 (192)
25 PRK11594 efflux system membran 31.0 46 0.001 24.9 2.4 25 185-209 23-47 (67)
26 PF03886 DUF330: Protein of un 28.7 2.7E+02 0.0058 21.3 7.3 48 133-180 89-141 (161)
27 TIGR03000 plancto_dom_1 Planct 26.9 1.5E+02 0.0033 22.6 4.6 28 136-163 42-69 (75)
28 COG0590 CumB Cytosine/adenosin 26.9 44 0.00095 27.4 1.8 21 181-201 52-72 (152)
29 PF12528 DUF3728: Prepilin pep 25.5 1.6E+02 0.0034 22.3 4.5 34 133-168 43-78 (84)
30 TIGR02887 spore_ger_x_C germin 25.4 1.5E+02 0.0033 26.4 5.0 58 147-208 264-334 (371)
31 PF11228 DUF3027: Protein of u 25.3 1E+02 0.0023 27.3 4.0 33 134-166 26-58 (193)
32 COG2055 Malate/L-lactate dehyd 25.2 82 0.0018 30.0 3.5 39 166-204 72-111 (349)
33 PF14356 DUF4403: Domain of un 24.7 1.7E+02 0.0038 27.3 5.5 32 69-112 3-34 (427)
34 PF13670 PepSY_2: Peptidase pr 23.8 2.8E+02 0.006 19.9 5.5 20 123-146 32-51 (83)
35 PRK02047 hypothetical protein; 23.5 1E+02 0.0022 23.4 3.2 39 124-162 32-71 (91)
36 PF07797 DUF1639: Protein of u 23.2 39 0.00085 24.3 0.8 18 123-140 27-45 (50)
37 PF00763 THF_DHG_CYH: Tetrahyd 23.0 86 0.0019 24.3 2.7 26 183-208 40-65 (117)
38 PF11259 DUF3060: Protein of u 22.8 2.9E+02 0.0062 19.8 5.2 34 148-182 24-59 (61)
39 smart00867 YceI YceI-like doma 22.7 1.8E+02 0.0038 22.4 4.4 33 134-166 78-110 (166)
40 PF03072 DUF237: MG032/MG096/M 22.2 54 0.0012 27.7 1.5 17 133-150 82-100 (137)
41 PF11209 DUF2993: Protein of u 21.3 4.5E+02 0.0097 21.3 6.7 87 117-206 98-210 (225)
42 PF05423 Mycobact_memb: Mycoba 20.0 1.6E+02 0.0035 24.2 3.9 26 144-174 103-128 (140)
No 1
>COG4712 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.69 E-value=2.5e-17 Score=143.11 Aligned_cols=105 Identities=17% Similarity=0.205 Sum_probs=92.3
Q ss_pred HHHHHHHhcCCCCCCCccCCCC---------CCcceehhHHHHhhhccccC--CceeeeeeEEEcCCCeEEEEEEEEEEe
Q 028375 93 LVEILRDLNKRIPDNIINPSDN---------TSSTFISWYNANRMLSFYAP--GWCGEVRDVIFSENGSVTVVYRVTLRG 161 (210)
Q Consensus 93 LsEILrdL~kpvPd~~Ik~k~~---------~sl~yIPW~~vnr~L~~~aP--gWsgEVrdVi~sdg~~VtVvyRlTI~G 161 (210)
|+|++..|++|+|.+-|.||+. +-|+|++-+.+++||++++| ||+.|.. ++-+ |.-.+|..+++..+
T Consensus 3 lsdvq~alq~pl~a~~V~wrv~~f~a~~~~allLAy~DaRavq~rlDevfgv~gW~~E~~-~v~G-~~~ctV~v~~~d~w 80 (234)
T COG4712 3 LSDVQMALQRPLKASEVEWRVQSFKAKSGCALLLAYKDARAVQKRLDEVFGVLGWEREHQ-LVNG-NLFCTVRVYDEDMW 80 (234)
T ss_pred HHHHHHHhhCCCCcceeEEeeeccccCCceeeeehhhhhHHHHHHHHHhcCcccchhhee-eccC-CeeeeEEEEeeeee
Confidence 7899999999999999999962 56889999999999999999 5999984 4443 66778888888888
Q ss_pred cCcceeeeecccccCCCCCCCChHHHHHHHHHHHHHHHhcCcccccc
Q 028375 162 SDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGLGLYLYH 208 (210)
Q Consensus 162 ~DgeitREatGta~~~D~~ygDpvsaAEamAFrRACArFGLGLYLYh 208 (210)
+||+++||++... ++..+.+.+|||||.+||+|+|||+
T Consensus 81 ----VTk~D~ge~~~~e-----a~Kg~aSdsmKRaavqfGIGRyLYd 118 (234)
T COG4712 81 ----VTKQDVGEESNTE-----AEKGQASDSMKRAAVQFGIGRYLYD 118 (234)
T ss_pred ----eeeccccccchhH-----HHhcccchHHHHHHhhhccchhhhc
Confidence 4999999997633 7888999999999999999999997
No 2
>PF04098 Rad52_Rad22: Rad52/22 family double-strand break repair protein; InterPro: IPR007232 The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to Rad52. These proteins contain two helix-hairpin-helix motifs [].; GO: 0006281 DNA repair, 0006310 DNA recombination; PDB: 1KN0_I 1H2I_U.
Probab=99.68 E-value=2.5e-17 Score=132.48 Aligned_cols=114 Identities=27% Similarity=0.390 Sum_probs=85.9
Q ss_pred HHHHHHHhcCCCCCCCccCCCC----CCcceehhHHHHhhhcccc--CCceeeeeeEEEc----CCC------eEEEEEE
Q 028375 93 LVEILRDLNKRIPDNIINPSDN----TSSTFISWYNANRMLSFYA--PGWCGEVRDVIFS----ENG------SVTVVYR 156 (210)
Q Consensus 93 LsEILrdL~kpvPd~~Ik~k~~----~sl~yIPW~~vnr~L~~~a--PgWsgEVrdVi~s----dg~------~VtVvyR 156 (210)
+.+|+..|.+|||...|++|++ ..+.||+.+.+.++||.++ .||+.||.++... +.+ .+++.+|
T Consensus 2 ~~~i~~~L~~~~~~~~i~~R~~~~~~~~~~yl~~~~vi~~aN~vfGfngWs~~i~~~~~~~~~~~~~~~~~~~~~~~~vr 81 (154)
T PF04098_consen 2 IGEIQEKLEKPLPPEEISWRPGSGGKSKLPYLESRKVIELANEVFGFNGWSSEIISLEQDFVEEEPGEGKYSVGYSAIVR 81 (154)
T ss_dssp HHHHHHHHH--B-TTTEEEEE-TTS--EEEEE-HHHHHHHHHHHH-TTTEEEEEEEEEEEEEEESSS--SEEEEEEEEEE
T ss_pred HHHHHHHHhCccCHHHhEecccCCCCccccccCHHHHHHHHHHHhCcCCCceEEEeeEeeeeeccCCceeEEEEEEEEEE
Confidence 4789999999999999999964 3589999999999999998 4799999887771 122 3566667
Q ss_pred EEEEecCcceeeeecccccCCC-----CCCCChHHHHHHHHHHHHHHHhc--CccccccC
Q 028375 157 VTLRGSDGEAHREATGTVSSSD-----SRITDPVAAAEEIAFCKACARFG--LGLYLYHE 209 (210)
Q Consensus 157 lTI~G~DgeitREatGta~~~D-----~~ygDpvsaAEamAFrRACArFG--LGLYLYhe 209 (210)
|||. ||+ +||++|...... ..+.++.+.|.++|||||+..|| ||+|||+.
T Consensus 82 itLk--dg~-~~e~~G~g~~~~~~~k~~a~~~akK~AvtdAlKRA~~~fG~~lG~~Lyd~ 138 (154)
T PF04098_consen 82 ITLK--DGT-YREDIGYGWSENMDGKGMAIEKAKKGAVTDALKRALRSFGNQLGRYLYDK 138 (154)
T ss_dssp EEET--TS--EEEEEEEEEEESES-HHHHHHHHHHHHHHHHHHHHHHTT-GGGTTGGG-H
T ss_pred EEEe--CCc-eeeecceEEEecCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7765 455 789999865542 23677899999999999999999 99999974
No 3
>PF06378 DUF1071: Protein of unknown function (DUF1071); InterPro: IPR009425 This entry is represented by Bacteriophage bIL285, Orf14. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical bacterial and phage proteins of unknown function.
Probab=99.11 E-value=3.1e-10 Score=95.27 Aligned_cols=89 Identities=25% Similarity=0.290 Sum_probs=68.7
Q ss_pred CCcceehhHHHHhhhccccCCceeeeeeEE------------Ec-CCCeEEEEEEEEEEecCcceeeeeccc------cc
Q 028375 115 TSSTFISWYNANRMLSFYAPGWCGEVRDVI------------FS-ENGSVTVVYRVTLRGSDGEAHREATGT------VS 175 (210)
Q Consensus 115 ~sl~yIPW~~vnr~L~~~aPgWsgEVrdVi------------~s-dg~~VtVvyRlTI~G~DgeitREatGt------a~ 175 (210)
..+.|+.|..+-..|..++|+|+++|.+-- |- .+.-.+|..+|||.|. +++-.=- -+
T Consensus 20 ~~l~YLSWA~Aw~~lk~~~P~at~~i~~f~~~~~~~~~~~~p~~~t~~g~~V~v~vti~g~----t~~~~lPVMD~rNk~ 95 (164)
T PF06378_consen 20 NGLSYLSWAWAWALLKKIYPDATYEIVEFPEYDITGLPYGVPYLDTNTGYMVEVSVTIEGQ----TYTMWLPVMDGRNKA 95 (164)
T ss_pred CCCCeehHHHHHHHHHHhCCCCeEEEEECCCCCCCCCccccceecCCceEEEEEEEEECCE----EEEEEEeecCCCCCc
Confidence 579999999999999999999999996521 22 2334579999999885 5543211 11
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhcCcccccc
Q 028375 176 SSDSRITDPVAAAEEIAFCKACARFGLGLYLYH 208 (210)
Q Consensus 176 ~~D~~ygDpvsaAEamAFrRACArFGLGLYLYh 208 (210)
. +...+..|-+|.-.||.+|||.||||||||.
T Consensus 96 i-~~p~~~dINka~~RclVKalA~~GLGLyiYa 127 (164)
T PF06378_consen 96 I-EKPTAFDINKAIMRCLVKALAMFGLGLYIYA 127 (164)
T ss_pred c-cCcchhhhHHHHHHHHHHHHHHhCccceeec
Confidence 1 3345667899999999999999999999996
No 4
>TIGR00607 rad52 recombination protein rad52. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=1.5e-09 Score=91.33 Aligned_cols=112 Identities=24% Similarity=0.377 Sum_probs=87.8
Q ss_pred HHHHHhcCCCCCCCccCCCC---CCcceehhHHHHhhhccccC--CceeeeeeEEEc--C--CC----eEEEEEEEEEEe
Q 028375 95 EILRDLNKRIPDNIINPSDN---TSSTFISWYNANRMLSFYAP--GWCGEVRDVIFS--E--NG----SVTVVYRVTLRG 161 (210)
Q Consensus 95 EILrdL~kpvPd~~Ik~k~~---~sl~yIPW~~vnr~L~~~aP--gWsgEVrdVi~s--d--g~----~VtVvyRlTI~G 161 (210)
.|+..|+++++...|+.|++ .++.|||.+.+...-|.+.. ||+-+|.++... | .+ .++++.|||+
T Consensus 1 ~iq~~l~~~lgpe~is~R~g~gg~kv~Yieg~k~i~lANeiFGFnGWSs~I~~~~vd~~de~~~k~~vg~saiVRVtL-- 78 (161)
T TIGR00607 1 AIQKALRQKLGPEYISSRSGGGGQKVCYIEGWKVINLANEIFGYNGWSHSITQQNVDFVDENNGKFSVGVCAIVRVTL-- 78 (161)
T ss_pred ChhHHhhcccCchheeeccCCCCceEEeccHHHHHHHHHHhcCCCCceeeeeecccceecccCCcEEEEEEEEEEEEE--
Confidence 37889999999999999974 78999999999999999976 799999876542 1 11 2566667776
Q ss_pred cCcceeeeecccccCCC-CC----CCChHHHHHHHHHHHHHHHhc--CccccccC
Q 028375 162 SDGEAHREATGTVSSSD-SR----ITDPVAAAEEIAFCKACARFG--LGLYLYHE 209 (210)
Q Consensus 162 ~DgeitREatGta~~~D-~~----ygDpvsaAEamAFrRACArFG--LGLYLYhe 209 (210)
.||. +||++|-....+ .+ |...-+.|..+|+|||+--|| ||.-||+.
T Consensus 79 kDGt-~~EdiG~G~~~n~~~K~~A~ekAKKeAvTDAlKRAlr~FGn~lGN~lydk 132 (161)
T TIGR00607 79 KDGS-YHEDVGYGVSENLRSKALAFEKAKKEAVTDALKRALRNFGNALGNCLYDK 132 (161)
T ss_pred cCCc-EeecccceeeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhccH
Confidence 4774 899999865553 22 234456678899999999998 89999975
No 5
>PF06420 Mgm101p: Mitochondrial genome maintenance MGM101; InterPro: IPR009446 The mgm101 gene was identified as essential for maintenance of the mitochondrial genome in Saccharomyces cerevisiae []. Based on its DNA-binding activity, and experimental work with a temperature-sensitive mgm101 mutant, it has been proposed that the mgm101 gene product performs an essential function in the repair of oxidatively damaged mitochondrial DNA [].; GO: 0000002 mitochondrial genome maintenance, 0000262 mitochondrial chromosome
Probab=98.70 E-value=1.1e-07 Score=80.84 Aligned_cols=112 Identities=19% Similarity=0.230 Sum_probs=91.4
Q ss_pred HHHHHHhcCCCCCCCccCCCCCCcceehhHHHHhhhcccc-C-CceeeeeeEEEcCCCeEEEEEEEEEEecCcceeeeec
Q 028375 94 VEILRDLNKRIPDNIINPSDNTSSTFISWYNANRMLSFYA-P-GWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREAT 171 (210)
Q Consensus 94 sEILrdL~kpvPd~~Ik~k~~~sl~yIPW~~vnr~L~~~a-P-gWsgEVrdVi~sdg~~VtVvyRlTI~G~DgeitREat 171 (210)
.|+.+.|.+|+....|+.||.. +-|+|+-.+.||||.-. | ||.--=|....=.++.|+=.|-|..+| .+.=++.
T Consensus 17 ~e~~~~L~~pl~~~DiEIKPDG-liYLPEikYRRiLN~AFGpGgWgL~Prg~~~v~~k~v~ReyaLic~G---r~Vs~a~ 92 (171)
T PF06420_consen 17 KEVADILLAPLDPEDIEIKPDG-LIYLPEIKYRRILNKAFGPGGWGLVPRGETIVTGKIVTREYALICHG---RLVSQAR 92 (171)
T ss_pred HHHHHHHhCCCChhceeECCCc-eEEchHHHHHHHHHHhcCCCceeeeecCCceecCceEEEEEEEEEcC---EEEEEee
Confidence 3677788999999999998754 67999999999999876 6 498544433222367788788877776 4888999
Q ss_pred cc-ccCCCCCCCChHHHHHHHHHHHHHHHhcCccccccC
Q 028375 172 GT-VSSSDSRITDPVAAAEEIAFCKACARFGLGLYLYHE 209 (210)
Q Consensus 172 Gt-a~~~D~~ygDpvsaAEamAFrRACArFGLGLYLYhe 209 (210)
|+ ...+..+++++.+.|.+.||.|||.-+|++=.||+.
T Consensus 93 GEq~yf~~~~i~tA~EgcKSNALmRCCKDLGIaSELWDP 131 (171)
T PF06420_consen 93 GEQDYFSPDSIPTATEGCKSNALMRCCKDLGIASELWDP 131 (171)
T ss_pred ccccccCCCCCchHHHHHHHHHHHHHHHHcCcchhhcCh
Confidence 99 445677789999999999999999999999999974
No 6
>PHA02448 hypothetical protein
Probab=97.89 E-value=2.8e-05 Score=66.14 Aligned_cols=112 Identities=27% Similarity=0.298 Sum_probs=91.5
Q ss_pred CCchHHHHHHHhcCCCCCCCccCCC--CCCcceehhHHHHhhhccccCCceeeeeeEEEcCCCeE------EEEEEEEEE
Q 028375 89 MTRPLVEILRDLNKRIPDNIINPSD--NTSSTFISWYNANRMLSFYAPGWCGEVRDVIFSENGSV------TVVYRVTLR 160 (210)
Q Consensus 89 itRPLsEILrdL~kpvPd~~Ik~k~--~~sl~yIPW~~vnr~L~~~aPgWsgEVrdVi~sdg~~V------tVvyRlTI~ 160 (210)
|+.|=.|=|..|++|||.+-|..-| +..++|+--.-+.-+|-..-|-|+||- +.+.+++-. -+--|||+-
T Consensus 1 msepdveglaklrepfppnqigklpkggi~ld~~gh~~lt~r~l~~dplwtwep--~a~~~~glp~~d~~gglwirlt~~ 78 (192)
T PHA02448 1 MSEPDVEGLAKLREPFPPNQIGKLPKGGITLDFLGHGYLTARFLDVDPLWTWEP--FAVGDNGLPLLDEHGGLWIRLTLC 78 (192)
T ss_pred CCccchhHHHHhcCCCChhhhccCCCCceeEEecchhhhhhhhcccCccccccc--cccCCCCCcccccCCCeEEEEEEe
Confidence 4668889999999999999998654 688999998888888888899999998 566543322 256799999
Q ss_pred ecCcceeeeecccccCCCCCCCChHHHHHHHHHHHHHHHhcCcccccc
Q 028375 161 GSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGLGLYLYH 208 (210)
Q Consensus 161 G~DgeitREatGta~~~D~~ygDpvsaAEamAFrRACArFGLGLYLYh 208 (210)
|. ||-.-|.+. +..+ .++|+.|..+|+|.|--|||--|.||.
T Consensus 79 g~----tr~gygd~~-gk~g-pnavkeaigdalrnagmrfgaal~lw~ 120 (192)
T PHA02448 79 GV----TRIGYGDAG-GKKG-PNAVKEAIGDALRNAGMRFGAALDLWC 120 (192)
T ss_pred cc----ceeeccccC-CCcC-chHHHHHHHHHHHhccchhhHHHHHHh
Confidence 96 998888763 3333 578999999999999999999999985
No 7
>COG5055 RAD52 Recombination DNA repair protein (RAD52 pathway) [DNA replication, recombination, and repair]
Probab=97.82 E-value=3.8e-05 Score=71.40 Aligned_cols=114 Identities=27% Similarity=0.420 Sum_probs=82.9
Q ss_pred HHHHHHHhcCCCCCCCccCCCC---CCcceehhHHHHhhhccccC--CceeeeeeEEEc--C---CCe----EEEEEEEE
Q 028375 93 LVEILRDLNKRIPDNIINPSDN---TSSTFISWYNANRMLSFYAP--GWCGEVRDVIFS--E---NGS----VTVVYRVT 158 (210)
Q Consensus 93 LsEILrdL~kpvPd~~Ik~k~~---~sl~yIPW~~vnr~L~~~aP--gWsgEVrdVi~s--d---g~~----VtVvyRlT 158 (210)
.-.|+..|.+..=...|..|+| .+++|||=+.+...-|.... ||+-|||+|... + .++ ++|..|||
T Consensus 26 ~~~lqs~L~rklgpeYis~R~G~g~~~iayIegw~~I~lANeiFGfnGWss~I~sv~id~~ee~~e~k~svg~saiVRVT 105 (375)
T COG5055 26 IGKLQSKLERKLGPEYISRRSGFGGSSIAYIEGWKAIELANEIFGFNGWSSEIRSVEIDYCEEFEEKKFSVGASAIVRVT 105 (375)
T ss_pred HHHHHHHHHHHhccHhhccccCCCCCceeeechhHHHHHHHHhhCcCccccceeeeeeeccccccccceeeeeEEEEEEE
Confidence 4456677777777788888875 79999998877777777654 899999999764 1 122 34556777
Q ss_pred EEecCcceeeeecccccCCCCC-----CCChHHHHHHHHHHHHHHHhc--CccccccC
Q 028375 159 LRGSDGEAHREATGTVSSSDSR-----ITDPVAAAEEIAFCKACARFG--LGLYLYHE 209 (210)
Q Consensus 159 I~G~DgeitREatGta~~~D~~-----ygDpvsaAEamAFrRACArFG--LGLYLYhe 209 (210)
|. ||. +||.+|=-+.+-.. |.-.-+.|.-+|||||-..|| ||=+||+-
T Consensus 106 LK--DGt-y~EdiGyGsien~r~ka~ayek~KKEavtDALKRALr~Fgnslgnc~ydk 160 (375)
T COG5055 106 LK--DGT-YREDIGYGSIENCRRKAEAYEKAKKEAVTDALKRALRNFGNSLGNCLYDK 160 (375)
T ss_pred ec--CCc-cccccccceeecccccHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Confidence 64 333 89999876555333 444445678899999999999 88899863
No 8
>KOG4141 consensus DNA repair and recombination protein RAD52/RAD22 [Replication, recombination and repair]
Probab=95.54 E-value=0.033 Score=49.60 Aligned_cols=108 Identities=21% Similarity=0.271 Sum_probs=76.5
Q ss_pred HHHHHHhcCCCCCCCccCCC---CCCcceehhHHHHhhhccccC--CceeeeeeEEEc-----CCC---eEEEEEEEEEE
Q 028375 94 VEILRDLNKRIPDNIINPSD---NTSSTFISWYNANRMLSFYAP--GWCGEVRDVIFS-----ENG---SVTVVYRVTLR 160 (210)
Q Consensus 94 sEILrdL~kpvPd~~Ik~k~---~~sl~yIPW~~vnr~L~~~aP--gWsgEVrdVi~s-----dg~---~VtVvyRlTI~ 160 (210)
..|++.|.++.=...|+.|. +.++.||+=+.+...-|.... ||+-+|++|... +++ -+++..||||.
T Consensus 37 ~~iqk~L~~~lgpeYiS~R~g~gg~~v~yIegw~vI~lANeiFGyNGWs~sI~~~~vd~~d~~~~k~~vg~~a~VrVtLk 116 (222)
T KOG4141|consen 37 QAIQKKLRQKLGPEYISSRMGGGGQSVCYIEGWRVINLANEIFGYNGWSSSITSVNVDFVDEEEGKFSVGVSAIVRVTLK 116 (222)
T ss_pred HHHHHHHHHHhccHhhhccccCCCceeEEecchHHHHHHHHHhCcCcccccceeeecceeccccCeEEEeEEEEEEEEEe
Confidence 45889999999999999986 389999998887777777754 899999887653 222 14556788886
Q ss_pred -ecCcceeeeecccccCC---CC--CCCChHHHHHHHHHHHHHHHhcCccc
Q 028375 161 -GSDGEAHREATGTVSSS---DS--RITDPVAAAEEIAFCKACARFGLGLY 205 (210)
Q Consensus 161 -G~DgeitREatGta~~~---D~--~ygDpvsaAEamAFrRACArFGLGLY 205 (210)
|+ +||++|=-+.. .. .|.-.-+-|...|++++-..|+....
T Consensus 117 DGt----yhEDiGyG~~e~~~~r~~~~~~~~k~~~~d~~k~~l~~~~n~i~ 163 (222)
T KOG4141|consen 117 DGT----YHEDIGYGSAENLSSRGLCYEKAKKEAVGDALKKALRSFENTIL 163 (222)
T ss_pred cCc----ccccccccccccchhhhhhhhhhhhhhhhhhhhHHHhhcccccc
Confidence 54 89998854211 11 12222344777888999998887654
No 9
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=67.17 E-value=32 Score=27.58 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=51.5
Q ss_pred ceeeeeeEEEcCCCeEEEEEEEEEEecCcceeeeecccccCCCCCCCChHHHHHHHHHHHHH
Q 028375 136 WCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKAC 197 (210)
Q Consensus 136 WsgEVrdVi~sdg~~VtVvyRlTI~G~DgeitREatGta~~~D~~ygDpvsaAEamAFrRAC 197 (210)
|.+++ .+.. .|..+.+.++.+|...++.-.++-.|+....-.-.|-.++++.+..++++-
T Consensus 89 ~~g~~-~~~~-~G~P~~~~G~~~L~~~~~gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~ 148 (159)
T PF10698_consen 89 RTGTF-TVSI-PGAPVSISGTMRLRPDGGGTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLL 148 (159)
T ss_pred EEEEE-EEEe-cCceEEEEEEEEEecCCCCEEEEEEEEEEEEEccccHHHHHHHHHHHHHHH
Confidence 78888 3444 488999999999999999899999999999988899999999888877753
No 10
>PF05504 Spore_GerAC: Spore germination B3/ GerAC like, C-terminal ; InterPro: IPR008844 The GerAA, -AB, and -AC proteins of the Bacillus subtilis spore are required for the germination response to L-alanine as the sole germinant. Members of GerAC family are thought to be located in the inner spore membrane. Although the function of this family is unclear, they are likely to encode the components of the germination apparatus that respond directly to this germinant, mediating the spore's response [].; GO: 0009847 spore germination, 0016020 membrane; PDB: 3N54_B.
Probab=57.80 E-value=14 Score=28.94 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCCeEEEEEEEEEEecCcceeeeecccccCCCCCCCChHHHHHHHHHHHHHHH-------------hcCcccccc
Q 028375 147 ENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACAR-------------FGLGLYLYH 208 (210)
Q Consensus 147 dg~~VtVvyRlTI~G~DgeitREatGta~~~D~~ygDpvsaAEamAFrRACAr-------------FGLGLYLYh 208 (210)
.++.+.+...|.+.|. ..|..+...+.+...-.-++++.+..+++-|.+ ||||.|+|.
T Consensus 64 ~~~~~~~~i~i~~~~~----i~e~~~~~~l~~~~~~~~le~~~~~~i~~~~~~~i~k~q~~~~~D~lg~g~~~~~ 134 (171)
T PF05504_consen 64 KGGKPKFTINIKLKGD----IIEYQSNIDLFDPEEIKELEKQLEEEIKKEIQSLIKKMQKELGVDPLGFGEYLRR 134 (171)
T ss_dssp -SSSEEEEEEEEEEEE----EE----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S-HHHHHHH
T ss_pred eCCcEEEEEEEEEEEE----EEEeecCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcChHHHHHHHHH
Confidence 4667888888888885 667666665544333345777777777666653 788888874
No 11
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=50.50 E-value=29 Score=29.11 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHHHHHhc----Cccccc
Q 028375 182 TDPVAAAEEIAFCKACARFG----LGLYLY 207 (210)
Q Consensus 182 gDpvsaAEamAFrRACArFG----LGLYLY 207 (210)
.||..-||-.|++.|+.+++ .|.-||
T Consensus 57 ~d~~~HAEi~Ai~~a~~~~~~~~l~g~tlY 86 (172)
T PRK10860 57 HDPTAHAEIMALRQGGLVLQNYRLLDATLY 86 (172)
T ss_pred CCCccCHHHHHHHHHHHhcCCCCcCCcEEE
Confidence 57899999999999999875 355555
No 12
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=50.45 E-value=36 Score=25.11 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=32.2
Q ss_pred ehhHHHHhhhccccCCc--eeeeeeEEEcCC---CeEEEEEEEEEEecCcceeeee
Q 028375 120 ISWYNANRMLSFYAPGW--CGEVRDVIFSEN---GSVTVVYRVTLRGSDGEAHREA 170 (210)
Q Consensus 120 IPW~~vnr~L~~~aPgW--sgEVrdVi~sdg---~~VtVvyRlTI~G~DgeitREa 170 (210)
++|..+.+.+.....+. +.++.|+=.+++ +..++.+|+|..-.|+.++.|.
T Consensus 18 ~~~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~~g~kS~~~rl~~~~~~~TLt~~e 73 (94)
T PF03147_consen 18 VPFADIEEVIRSAGGPLLESVELFDVYRGEKLPEGKKSLTYRLTYQSPDRTLTDEE 73 (94)
T ss_dssp S-HHHHHHHHHHHHTTTEEEEEEEEEEESTTSGTTEEEEEEEEEE--SSS---HHH
T ss_pred CCHHHHHHHHHHhCccceeEEEEEEEEcCCCCCCCcEEEEEEEEEECCCCCCCHHH
Confidence 57888888877777653 445566655433 7899999999998888777654
No 13
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=50.25 E-value=35 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.066 Sum_probs=24.6
Q ss_pred CeEEEEEEEEEEecCcceeeeecccccCCCCCCCChHHHHHHHHHHHHHHHh
Q 028375 149 GSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARF 200 (210)
Q Consensus 149 ~~VtVvyRlTI~G~DgeitREatGta~~~D~~ygDpvsaAEamAFrRACArF 200 (210)
++..+-.+|||.+. +++ + .|.+ .-....|.++|||+|+.+-
T Consensus 74 G~pv~dv~V~l~~~--~~h-~-------~~ss-~~af~~Aa~~a~~~a~~~a 114 (115)
T cd01684 74 GWEVTDCKVTLTYG--RYH-S-------PVST-AADFRELTPRVLRQALKKA 114 (115)
T ss_pred CCCEeeEEEEEEEe--eec-C-------CCCC-HHHHHHHHHHHHHHHHHhc
Confidence 34555566777763 222 1 1222 2256789999999998764
No 14
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=45.15 E-value=39 Score=25.47 Aligned_cols=26 Identities=46% Similarity=0.638 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHHHHHHHhc----Cccccc
Q 028375 182 TDPVAAAEEIAFCKACARFG----LGLYLY 207 (210)
Q Consensus 182 gDpvsaAEamAFrRACArFG----LGLYLY 207 (210)
+||..-||-.|+++|+.+.| -|..||
T Consensus 42 ~~~~~HAE~~ai~~~~~~~~~~~~~~~~ly 71 (109)
T cd01285 42 GDPTAHAEIVAIRNAARRLGSYLLSGCTLY 71 (109)
T ss_pred CCCcccHHHHHHHHHHHHhCCCccCCeEEE
Confidence 67899999999999999866 455555
No 15
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=43.63 E-value=12 Score=31.49 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=33.4
Q ss_pred hccccCCceeeeeeEEEcCCCeEEEEEEEEEEecCcceeeeecccccCCC
Q 028375 129 LSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSD 178 (210)
Q Consensus 129 L~~~aPgWsgEVrdVi~sdg~~VtVvyRlTI~G~DgeitREatGta~~~D 178 (210)
|-...|.|.|-.++|+-++ |.+|..+.---+.++.+-+|+-++|.
T Consensus 16 lT~RLP~WAGvRQnv~GS~-----v~G~pV~Pans~~l~yat~~~S~lDt 60 (135)
T PHA03385 16 LTTRLPSWAGVRQNVMGST-----VDGRPVLPANSSTLTYATVSSSSLDT 60 (135)
T ss_pred eeccCcccccccccccccC-----CCCCccCCCCcceeeeeecCCCchHH
Confidence 5667899999999999871 33444466666778888888887764
No 16
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=42.07 E-value=15 Score=32.41 Aligned_cols=95 Identities=20% Similarity=0.123 Sum_probs=60.7
Q ss_pred HHHHHHhcCCCCCCCccCC-CCCCcceehhHHHHhhhccccCCceeeeeeEEEcCCCeEEEEEEEEEEecCcceeeeecc
Q 028375 94 VEILRDLNKRIPDNIINPS-DNTSSTFISWYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATG 172 (210)
Q Consensus 94 sEILrdL~kpvPd~~Ik~k-~~~sl~yIPW~~vnr~L~~~aPgWsgEVrdVi~sdg~~VtVvyRlTI~G~DgeitREatG 172 (210)
-+|+++|.+.+|++-|..= .+..-..+-||.+-+.|...+|+- .+.. +-.++...+||-+-==|-=+.--+|+
T Consensus 26 ~~imk~lk~~~~~~~v~v~lSkageeVvk~YgL~~~l~~~~~~~-----~~e~-~ansPfi~GrlqlGkYD~llvaPaTs 99 (187)
T COG1036 26 YQIMKELKKEYGDVEVDVFLSKAGEEVVKMYGLWDKLEKIFGGL-----EVEI-GANSPFIAGRLQLGKYDFLLVAPATS 99 (187)
T ss_pred HHHHHHHHhhcCCceEEEeehhhHHHHHHHHHHHHHHHHHcCCe-----Eeec-CCCCCceecceecccccEEEEccccc
Confidence 5899999999999655532 223456788999999999999993 2333 23467788887764444444444555
Q ss_pred cccCC-CCCCCC-hHHHHHHHHHH
Q 028375 173 TVSSS-DSRITD-PVAAAEEIAFC 194 (210)
Q Consensus 173 ta~~~-D~~ygD-pvsaAEamAFr 194 (210)
..--. -.+++| =|++|.+||.|
T Consensus 100 NTvAKIa~GIADtLVTNAVaqa~K 123 (187)
T COG1036 100 NTVAKIAYGIADTLVTNAVAQAGK 123 (187)
T ss_pred chHHHHHhhhHHHHHHHHHHHhcC
Confidence 42100 112233 47889998865
No 17
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=39.50 E-value=19 Score=34.58 Aligned_cols=18 Identities=39% Similarity=0.838 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhcCcccc
Q 028375 188 AEEIAFCKACARFGLGLYL 206 (210)
Q Consensus 188 AEamAFrRACArFGLGLYL 206 (210)
-..|||||+||-+| |-|.
T Consensus 233 ELpQ~FcRl~AV~G-G~Y~ 250 (438)
T PF00996_consen 233 ELPQAFCRLSAVYG-GTYM 250 (438)
T ss_dssp HHHHHHHHHHHHTT--EEE
T ss_pred cHHHHHHHHhhhcC-cEEE
Confidence 46799999999999 7664
No 18
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=39.24 E-value=94 Score=20.09 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=7.9
Q ss_pred eEEEEEEEEEEe
Q 028375 150 SVTVVYRVTLRG 161 (210)
Q Consensus 150 ~VtVvyRlTI~G 161 (210)
.....+.++|.|
T Consensus 29 ~~~f~~~v~i~~ 40 (67)
T smart00358 29 APRFTVTVKVGG 40 (67)
T ss_pred CCcEEEEEEECC
Confidence 357777777744
No 19
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=37.07 E-value=51 Score=28.00 Aligned_cols=14 Identities=43% Similarity=0.774 Sum_probs=11.8
Q ss_pred EEEEEEEecCccee
Q 028375 154 VYRVTLRGSDGEAH 167 (210)
Q Consensus 154 vyRlTI~G~Dgeit 167 (210)
-|.||++|.||++.
T Consensus 49 ~ytVtV~G~dGs~~ 62 (139)
T PF04881_consen 49 WYTVTVQGPDGSIR 62 (139)
T ss_pred ceEEEEECCCCcce
Confidence 48899999999873
No 20
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=36.84 E-value=1.2e+02 Score=19.96 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=22.1
Q ss_pred ccCCceeeeeeEEEcCCCeEEEEEEEEE
Q 028375 132 YAPGWCGEVRDVIFSENGSVTVVYRVTL 159 (210)
Q Consensus 132 ~aPgWsgEVrdVi~sdg~~VtVvyRlTI 159 (210)
-.|++..++.++.. +|+.|.+.++.+.
T Consensus 49 ~~~~~~~~~~~~~~-~gd~v~~~~~~~~ 75 (102)
T PF12680_consen 49 SFPDIRFEIHDIFA-DGDRVVVEWTVTG 75 (102)
T ss_dssp HEEEEEEEEEEEEE-ETTEEEEEEEEEE
T ss_pred cCCceEEEEEEEEE-cCCEEEEEEEEEE
Confidence 45789999988866 7889999888876
No 21
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=35.88 E-value=1e+02 Score=22.58 Aligned_cols=34 Identities=32% Similarity=0.355 Sum_probs=23.9
Q ss_pred HhhhccccCCceeeeeeEEEcCCCeEEEEEEEEEEec
Q 028375 126 NRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGS 162 (210)
Q Consensus 126 nr~L~~~aPgWsgEVrdVi~sdg~~VtVvyRlTI~G~ 162 (210)
-+.|..-.|+++.+|.+++. +|+.|.+ |+++.|+
T Consensus 47 ~~~~~~afPD~~~~i~~~~~-~gd~v~~--~~~~~Gt 80 (126)
T PF07366_consen 47 LKELRAAFPDLRFEIEDVVA-EGDRVAV--RWTFTGT 80 (126)
T ss_dssp HHHHHHHSTTTEEEEEEEEE-ETTEEEE--EEEEEEE
T ss_pred HHHHHHHCCCCEEEEEEEEE-ECCEEEE--EEEEEEe
Confidence 34455568999999988888 5776544 6666675
No 22
>PRK00907 hypothetical protein; Provisional
Probab=34.25 E-value=59 Score=25.20 Aligned_cols=39 Identities=15% Similarity=0.007 Sum_probs=30.9
Q ss_pred HHHhhhccccCCceeeeeeEEEc-CCCeEEEEEEEEEEec
Q 028375 124 NANRMLSFYAPGWCGEVRDVIFS-ENGSVTVVYRVTLRGS 162 (210)
Q Consensus 124 ~vnr~L~~~aPgWsgEVrdVi~s-dg~~VtVvyRlTI~G~ 162 (210)
.+-.++..|+|+-..+-..+..| .|++++|+..+++.+-
T Consensus 33 ~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~ 72 (92)
T PRK00907 33 ELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESR 72 (92)
T ss_pred HHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCH
Confidence 56778889999876666566777 8999999988887764
No 23
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=31.39 E-value=1.1e+02 Score=23.12 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=25.6
Q ss_pred CeEEEEEEEEEEecCcceeeeecccccCCCCCCCChHHHHHHHHHHHHHHHhc
Q 028375 149 GSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFG 201 (210)
Q Consensus 149 ~~VtVvyRlTI~G~DgeitREatGta~~~D~~ygDpvsaAEamAFrRACArFG 201 (210)
+...+-.+|||.. ++.+ + .+. .+...+|..+||+.|..+-|
T Consensus 80 G~pv~~v~V~l~~--~~~~-~-------~~s--~~~~~~Aa~~a~~~al~~a~ 120 (120)
T cd01693 80 GFPVQDVAITLHS--LTIG-P-------GTS--PTMISACASQCVQKALKSAG 120 (120)
T ss_pred CCceeeEEEEEEe--CCcC-C-------CCC--HHHHHHHHHHHHHHHHHhcc
Confidence 4566667788875 4443 1 111 13556778999999987643
No 24
>COG2353 Uncharacterized conserved protein [Function unknown]
Probab=31.23 E-value=92 Score=26.55 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=26.2
Q ss_pred cCCceeeeeeEEEcCCCeEEEEEEEEEEecCc
Q 028375 133 APGWCGEVRDVIFSENGSVTVVYRVTLRGSDG 164 (210)
Q Consensus 133 aPgWsgEVrdVi~sdg~~VtVvyRlTI~G~Dg 164 (210)
-|.=.++..+|....++...|.+.|||+|.-.
T Consensus 100 yP~itF~st~v~~~g~~~~~v~G~LTi~GvTk 131 (192)
T COG2353 100 YPTITFTSTKVEKTGDDTGKVTGNLTIRGVTK 131 (192)
T ss_pred CCeEEEEEEEEEECCCCccEEEeEEEEeeecc
Confidence 46667888899987667889999999999733
No 25
>PRK11594 efflux system membrane protein; Provisional
Probab=31.04 E-value=46 Score=24.93 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhcCccccccC
Q 028375 185 VAAAEEIAFCKACARFGLGLYLYHE 209 (210)
Q Consensus 185 vsaAEamAFrRACArFGLGLYLYhe 209 (210)
++-+...++||-.+|.|+.++.||+
T Consensus 23 ~A~~l~~~lr~lL~r~g~YR~VWHp 47 (67)
T PRK11594 23 LSLALFWLVRRVLVPTGIYDFVWHP 47 (67)
T ss_pred HHHHHHHHHHHHHHHhCcceeeecH
Confidence 4566788999999999999999996
No 26
>PF03886 DUF330: Protein of unknown function (DUF330); InterPro: IPR005586 The proteins in this family are uncharacterised. The proteins are 170-190 amino residues in length.; PDB: 2IQI_F.
Probab=28.67 E-value=2.7e+02 Score=21.33 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=29.2
Q ss_pred cCCceeee--eeEEEcCCCeEEEEEEEEEEecCcc-e--eeeecccccCCCCC
Q 028375 133 APGWCGEV--RDVIFSENGSVTVVYRVTLRGSDGE-A--HREATGTVSSSDSR 180 (210)
Q Consensus 133 aPgWsgEV--rdVi~sdg~~VtVvyRlTI~G~Dge-i--tREatGta~~~D~~ 180 (210)
.|++.-++ +.....+++.+.+..+.+|.-.++. + +|.-.-+.++.+..
T Consensus 89 ~~~~~L~~~i~~F~~~~~~~a~l~~~~~l~~~~~~~~~~~~~f~~~~p~~~~~ 141 (161)
T PF03886_consen 89 PPDYRLSVDISRFEGDPGGQAVLSARWRLRDADGRRVVASRRFSASQPLSGDD 141 (161)
T ss_dssp --SEEEEEEEEEEEEE-TTSEEEEEEEEEEETTTTEEEEEEEEEEEEE-SSSS
T ss_pred CCcEEEEEEEEEEEccCCCeEEEEEEEEEEeCCCCeEEEEEEEEEEEeCCCCC
Confidence 34444433 3444435888999999999997765 3 55546677777654
No 27
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=26.91 E-value=1.5e+02 Score=22.63 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=24.0
Q ss_pred ceeeeeeEEEcCCCeEEEEEEEEEEecC
Q 028375 136 WCGEVRDVIFSENGSVTVVYRVTLRGSD 163 (210)
Q Consensus 136 WsgEVrdVi~sdg~~VtVvyRlTI~G~D 163 (210)
|.++|+--+-.||+.+++.=.|.+++.|
T Consensus 42 y~Y~v~a~~~~dG~~~t~~~~V~vrAGd 69 (75)
T TIGR03000 42 YEYTVTAEYDRDGRILTRTRTVVVRAGD 69 (75)
T ss_pred EEEEEEEEEecCCcEEEEEEEEEEcCCc
Confidence 8888876666699999999999999865
No 28
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=26.90 E-value=44 Score=27.37 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=19.1
Q ss_pred CCChHHHHHHHHHHHHHHHhc
Q 028375 181 ITDPVAAAEEIAFCKACARFG 201 (210)
Q Consensus 181 ygDpvsaAEamAFrRACArFG 201 (210)
-.||..-||-+|+|+||.+.|
T Consensus 52 ~~dptaHAEi~air~a~~~~~ 72 (152)
T COG0590 52 DNDPTAHAEILAIRAAAETLG 72 (152)
T ss_pred CCCccccHHHHHHHHHHHhhC
Confidence 367999999999999999986
No 29
>PF12528 DUF3728: Prepilin peptidase dependent protein C (DUF3728); InterPro: IPR022204 This family of proteins is found in bacteria. Proteins in this family are typically between 106 and 121 amino acids in length. The family is found in association with PF07963 from PFAM. There are two completely conserved C residues that may be functionally important. This family is frequently annotated as prepilin peptidase dependent protein C however there is little accompanying literature to confirm this.
Probab=25.49 E-value=1.6e+02 Score=22.26 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=22.6
Q ss_pred cCCceeeeeeEEEc-CCCeEEEEEEEEE-EecCcceee
Q 028375 133 APGWCGEVRDVIFS-ENGSVTVVYRVTL-RGSDGEAHR 168 (210)
Q Consensus 133 aPgWsgEVrdVi~s-dg~~VtVvyRlTI-~G~DgeitR 168 (210)
.|||..+. +..+ +++=+.++.+||. .|--++++|
T Consensus 43 ~~gWq~~~--~~~~~~~~C~~itvtv~tP~~~~a~LsR 78 (84)
T PF12528_consen 43 PPGWQYSR--QQTSIQGGCRSITVTVTTPQNQQAQLSR 78 (84)
T ss_pred CCCceeee--eeeccCCCeEEEEEEEecCCCcccccee
Confidence 45799777 5555 7887777777777 454555555
No 30
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc.
Probab=25.38 E-value=1.5e+02 Score=26.43 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=31.7
Q ss_pred CCCeEEEEEEEEEEecCcceeee-ecccccCCCCCCCChHHHHHHHHHHHHHH------------HhcCcccccc
Q 028375 147 ENGSVTVVYRVTLRGSDGEAHRE-ATGTVSSSDSRITDPVAAAEEIAFCKACA------------RFGLGLYLYH 208 (210)
Q Consensus 147 dg~~VtVvyRlTI~G~DgeitRE-atGta~~~D~~ygDpvsaAEamAFrRACA------------rFGLGLYLYh 208 (210)
.++.+.+.-.|.+.|. -.| ..+...+.+...-+-++++.+..+++-|. =||||.|+|.
T Consensus 264 ~~~~~~~~i~i~~~~~----i~e~~~~~~~~~~~~~~~~le~~~e~~i~~~~~~~i~k~Q~~~~D~~g~g~~~~~ 334 (371)
T TIGR02887 264 KGGKPHFKIHIKLEGR----ITESQDPKENLEKPKNLKKIEKEAEKEIEKEIEQLIKKLQKYKIDPLGLGDELYR 334 (371)
T ss_pred ECCeEEEEEEEEEEEE----EeeeccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 3556777777777775 555 33333222222223455555555554443 2799998864
No 31
>PF11228 DUF3027: Protein of unknown function (DUF3027); InterPro: IPR021391 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=25.35 E-value=1e+02 Score=27.29 Aligned_cols=33 Identities=30% Similarity=0.273 Sum_probs=22.7
Q ss_pred CCceeeeeeEEEcCCCeEEEEEEEEEEecCcce
Q 028375 134 PGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEA 166 (210)
Q Consensus 134 PgWsgEVrdVi~sdg~~VtVvyRlTI~G~Dgei 166 (210)
+||.|.|.-...+..+.+||.=-.-+.|.|.-+
T Consensus 26 ~GW~W~Vtvar~p~~~~~TV~Ev~LlPG~~ALl 58 (193)
T PF11228_consen 26 RGWQWAVTVARAPRAKTVTVSEVVLLPGEDALL 58 (193)
T ss_pred CCCEEEEEEEecCCCCcceEeeeeeccCCCccc
Confidence 469999933333356788888777778876544
No 32
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=25.22 E-value=82 Score=29.98 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=25.3
Q ss_pred eeeeecccccCC-CCCCCChHHHHHHHHHHHHHHHhcCcc
Q 028375 166 AHREATGTVSSS-DSRITDPVAAAEEIAFCKACARFGLGL 204 (210)
Q Consensus 166 itREatGta~~~-D~~ygDpvsaAEamAFrRACArFGLGL 204 (210)
+.||+-.++.+| |.++|.++....-.-.-+-|.++|||.
T Consensus 72 i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~ 111 (349)
T COG2055 72 IVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAA 111 (349)
T ss_pred EEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeE
Confidence 345555555555 778887765544444455678999986
No 33
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=24.68 E-value=1.7e+02 Score=27.35 Aligned_cols=32 Identities=31% Similarity=0.626 Sum_probs=26.2
Q ss_pred cCCceeeeCCccccCCCCCCCCchHHHHHHHhcCCCCCCCccCC
Q 028375 69 PNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPS 112 (210)
Q Consensus 69 ~~~ny~vpld~~~~~~~~s~itRPLsEILrdL~kpvPd~~Ik~k 112 (210)
+.|...||+.. ||++|.+.||+.+|..+.+..
T Consensus 3 ~~S~i~vPv~i------------~l~~l~~~~n~~lp~~~~~~~ 34 (427)
T PF14356_consen 3 PPSSINVPVEI------------PLADLEDALNRKLPGEFYGDD 34 (427)
T ss_pred CCcEEEEEEEE------------EHHHHHHHHhhhCchhhcCCC
Confidence 45666666655 799999999999999999875
No 34
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=23.84 E-value=2.8e+02 Score=19.85 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=9.7
Q ss_pred HHHHhhhccccCCceeeeeeEEEc
Q 028375 123 YNANRMLSFYAPGWCGEVRDVIFS 146 (210)
Q Consensus 123 ~~vnr~L~~~aPgWsgEVrdVi~s 146 (210)
..+.++|.. -|| +|++|.+.
T Consensus 32 ~~~~~~l~~--~G~--~v~~ve~~ 51 (83)
T PF13670_consen 32 EQAVAKLEA--QGY--QVREVEFD 51 (83)
T ss_pred HHHHHHHHh--cCC--ceEEEEEc
Confidence 344444444 344 55566663
No 35
>PRK02047 hypothetical protein; Provisional
Probab=23.46 E-value=1e+02 Score=23.42 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=30.8
Q ss_pred HHHhhhccccCCceeeeeeEEEc-CCCeEEEEEEEEEEec
Q 028375 124 NANRMLSFYAPGWCGEVRDVIFS-ENGSVTVVYRVTLRGS 162 (210)
Q Consensus 124 ~vnr~L~~~aPgWsgEVrdVi~s-dg~~VtVvyRlTI~G~ 162 (210)
.+..++..++|+-..+-..+..| .|++++|..++++...
T Consensus 32 ~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~ 71 (91)
T PRK02047 32 TIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSR 71 (91)
T ss_pred HHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCH
Confidence 66778888899877665567777 8999999998888764
No 36
>PF07797 DUF1639: Protein of unknown function (DUF1639); InterPro: IPR012438 This approximately 50-residue region is found in a number of sequences derived from hypothetical plant proteins. This region features a highly basic 5 amino-acid stretch towards its centre.
Probab=23.19 E-value=39 Score=24.25 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=15.6
Q ss_pred HHHHhhhccccCC-ceeee
Q 028375 123 YNANRMLSFYAPG-WCGEV 140 (210)
Q Consensus 123 ~~vnr~L~~~aPg-WsgEV 140 (210)
.+||+.||.+.|| |=.||
T Consensus 27 k~Vqk~ld~lfPG~wL~~v 45 (50)
T PF07797_consen 27 KNVQKQLDSLFPGLWLSEV 45 (50)
T ss_pred HHHHHHHhhcCcchhhhhc
Confidence 5799999999999 97665
No 37
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=23.01 E-value=86 Score=24.34 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHHHHHhcCcccccc
Q 028375 183 DPVAAAEEIAFCKACARFGLGLYLYH 208 (210)
Q Consensus 183 DpvsaAEamAFrRACArFGLGLYLYh 208 (210)
||-+.+-...-+|+|.++|+...+|+
T Consensus 40 d~~S~~Y~~~k~k~~~~~Gi~~~~~~ 65 (117)
T PF00763_consen 40 DPASISYVRSKQKAAEKLGIEFELIE 65 (117)
T ss_dssp -HHHHHHHHHHHHHHHHHT-EEEEEE
T ss_pred ChhHHHHHHHHHHHHHHcCCceEEEE
Confidence 58888889999999999999988775
No 38
>PF11259 DUF3060: Protein of unknown function (DUF3060); InterPro: IPR021417 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed.
Probab=22.78 E-value=2.9e+02 Score=19.76 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=22.5
Q ss_pred CCeEEE--EEEEEEEecCcceeeeecccccCCCCCCC
Q 028375 148 NGSVTV--VYRVTLRGSDGEAHREATGTVSSSDSRIT 182 (210)
Q Consensus 148 g~~VtV--vyRlTI~G~DgeitREatGta~~~D~~yg 182 (210)
+-.|++ +-+|+|.|.|-.++... |+..+.|.+.+
T Consensus 24 ~n~V~~~~v~~i~v~G~~N~V~~~~-G~P~v~d~G~~ 59 (61)
T PF11259_consen 24 DNTVTVDSVDNISVSGSDNTVTYKS-GDPKVSDTGSN 59 (61)
T ss_pred cCEEEEeeeeEEEEEecCCEEEecC-CCceEEeccCC
Confidence 334443 34699999999997776 66666665543
No 39
>smart00867 YceI YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to polyisoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.
Probab=22.70 E-value=1.8e+02 Score=22.39 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=20.9
Q ss_pred CCceeeeeeEEEcCCCeEEEEEEEEEEecCcce
Q 028375 134 PGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEA 166 (210)
Q Consensus 134 PgWsgEVrdVi~sdg~~VtVvyRlTI~G~Dgei 166 (210)
|.=.++...+....++.+.|.+.|||+|...++
T Consensus 78 p~i~f~~~~~~~~~~~~~~v~G~Lti~Gvtk~v 110 (166)
T smart00867 78 PTATFVSTSVKATGEGKYKVTGDLTLHGVTKPV 110 (166)
T ss_pred CeEEEEEEEEEECCCCeEEEEEEEEECCEeEeE
Confidence 433444444544333469999999999975544
No 40
>PF03072 DUF237: MG032/MG096/MG288 family 1; InterPro: IPR004306 This domain is found entirely in Mycoplasma pneumoniae proteins of unknown function. Another related domain (IPR004319 from INTERPRO) is found entirely in mycoplasmal proteins of the MG032/MG096/MG288 family and both domains often occur together.
Probab=22.17 E-value=54 Score=27.69 Aligned_cols=17 Identities=35% Similarity=0.884 Sum_probs=13.3
Q ss_pred cCC-ceeeeeeEEEc-CCCe
Q 028375 133 APG-WCGEVRDVIFS-ENGS 150 (210)
Q Consensus 133 aPg-WsgEVrdVi~s-dg~~ 150 (210)
-|+ |+||+ +|+|. ||+-
T Consensus 82 IPg~WkGkm-~vk~~~DG~v 100 (137)
T PF03072_consen 82 IPGSWKGKM-NVKFIFDGDV 100 (137)
T ss_pred CCCcccceE-EEEEEEcccc
Confidence 454 99999 88888 7763
No 41
>PF11209 DUF2993: Protein of unknown function (DUF2993); InterPro: IPR021373 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=21.27 E-value=4.5e+02 Score=21.29 Aligned_cols=87 Identities=22% Similarity=0.151 Sum_probs=45.6
Q ss_pred cceehhHHHHhhhccccCCceee----------e--eeEEEcCC-------CeEEEEEEEEEEecCcceeeeecccc-cC
Q 028375 117 STFISWYNANRMLSFYAPGWCGE----------V--RDVIFSEN-------GSVTVVYRVTLRGSDGEAHREATGTV-SS 176 (210)
Q Consensus 117 l~yIPW~~vnr~L~~~aPgWsgE----------V--rdVi~sdg-------~~VtVvyRlTI~G~DgeitREatGta-~~ 176 (210)
-..|+|..+++.|..-...+.+. . ..|.+. | ..++|.+.+.+...||.+.=+.+.-. ..
T Consensus 98 ~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-g~~~~~~~~~i~~~~~~~l~~~~~~l~l~~~~~~~g~ 176 (225)
T PF11209_consen 98 TVTLSEDDLNRALGSQVSRASGGDLISDLQIGDGSNGEVKLT-GDTVLLETIPITVSGTLRLVVVDGTLRLTPTDVQFGG 176 (225)
T ss_pred EEEECHHHHHHHHccccccccccccccccccccccccceEec-ccccccccceeEeeeEEEEEecCCEEEEEEeeeccCC
Confidence 34567777777776543222221 0 134443 3 25788888888777886533333322 11
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH------hcCcccc
Q 028375 177 SDSRITDPVAAAEEIAFCKACAR------FGLGLYL 206 (210)
Q Consensus 177 ~D~~ygDpvsaAEamAFrRACAr------FGLGLYL 206 (210)
+... +++..+...++.++... +++|+.+
T Consensus 177 ~~~~--~~lp~~~~~~l~~~~~~~~~l~~lp~~l~~ 210 (225)
T PF11209_consen 177 NLPD--DDLPSALTDALLDAFSFRIPLPNLPFGLRL 210 (225)
T ss_pred Cccc--ccccHHHHHHHHhhccccCccccCCCceEE
Confidence 1111 35555555566555543 6667654
No 42
>PF05423 Mycobact_memb: Mycobacterium membrane protein; InterPro: IPR008693 This family contains several membrane proteins from Mycobacterium species [].
Probab=20.00 E-value=1.6e+02 Score=24.20 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=17.9
Q ss_pred EEcCCCeEEEEEEEEEEecCcceeeeecccc
Q 028375 144 IFSENGSVTVVYRVTLRGSDGEAHREATGTV 174 (210)
Q Consensus 144 i~sdg~~VtVvyRlTI~G~DgeitREatGta 174 (210)
.++||+ .|.||||+ ||+.--|.+++.
T Consensus 103 Aq~~~~--~v~CrItV---dG~v~~E~t~~g 128 (140)
T PF05423_consen 103 AQGDGD--SVTCRITV---DGKVKDEQTATG 128 (140)
T ss_pred EEcCCC--eEEEEEEE---CCEEEEEEeccC
Confidence 344655 58999999 556777777654
Done!