Query 028375
Match_columns 210
No_of_seqs 47 out of 49
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 17:22:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2i_A RAD52, DNA repair prote 99.2 2.2E-11 7.4E-16 104.1 6.7 118 91-209 34-169 (209)
2 2zmu_A Fluorescent protein; GF 58.8 11 0.00039 32.4 4.7 29 133-162 83-112 (223)
3 3ebt_A Uncharacterized NTF2-li 49.8 49 0.0017 22.7 6.0 32 133-165 66-97 (132)
4 4exr_A Putative lipoprotein; Y 48.6 26 0.00089 28.1 5.0 86 66-173 7-93 (174)
5 2fgs_A Putative periplasmic pr 37.8 36 0.0012 26.9 4.2 34 133-166 78-111 (179)
6 2wol_A ORF15, clavulanic acid 37.5 26 0.00089 30.9 3.6 15 44-58 6-20 (562)
7 3p1x_A Interleukin enhancer-bi 37.3 98 0.0034 21.2 6.7 60 129-203 13-72 (75)
8 1wub_A Conserved hypothetical 37.1 33 0.0011 26.9 3.8 31 133-163 77-107 (178)
9 3en8_A Uncharacterized NTF-2 l 36.4 92 0.0031 22.4 5.9 33 125-158 51-84 (128)
10 3iyn_Q Protein IX, PIX, hexon- 33.1 3.6 0.00012 33.5 -2.3 65 129-202 15-81 (140)
11 2g84_A Cytidine and deoxycytid 32.6 36 0.0012 27.6 3.5 20 182-201 74-93 (197)
12 3f14_A Uncharacterized NTF2-li 30.2 1.3E+02 0.0044 20.7 5.7 31 134-165 57-87 (112)
13 2a8n_A Cytidine and deoxycytid 28.4 45 0.0015 25.4 3.2 26 182-207 48-77 (144)
14 2ljh_A Double-stranded RNA-spe 27.2 2E+02 0.0069 21.7 6.7 63 124-201 38-100 (114)
15 3ff2_A Uncharacterized cystati 27.1 81 0.0028 21.5 4.1 25 133-158 59-83 (117)
16 1y0g_A Protein YCEI; lipid bin 26.9 52 0.0018 26.1 3.5 33 133-166 102-134 (191)
17 2iqi_A Hypothetical protein XC 26.2 2.2E+02 0.0075 21.8 7.7 50 149-199 120-172 (192)
18 1qys_A TOP7; alpha-beta, novel 25.9 39 0.0013 25.9 2.4 17 141-158 79-95 (106)
19 1vk5_A Expressed protein; stru 25.0 42 0.0014 27.7 2.6 52 74-129 22-74 (157)
20 3ec9_A Uncharacterized NTF2-li 24.9 1E+02 0.0036 21.4 4.4 28 132-160 72-99 (140)
21 2a50_B ASFP595, GFP-like non-f 24.5 70 0.0024 26.3 3.9 28 133-161 20-48 (168)
22 1wwr_A TRNA adenosine deaminas 23.8 58 0.002 26.0 3.2 26 182-207 67-96 (171)
23 1bco_A MUA domain II, bacterio 22.9 89 0.003 26.0 4.3 76 125-209 6-89 (327)
24 3kkg_A Putative snoal-like pol 22.6 1.4E+02 0.0048 21.0 4.8 27 131-158 66-92 (146)
25 3n54_B Spore germination prote 21.8 93 0.0032 26.1 4.2 58 147-208 241-312 (350)
26 3g0k_A Putative membrane prote 21.3 1.1E+02 0.0039 22.6 4.2 25 133-158 82-106 (148)
27 2gjh_A Designed protein; oblig 21.2 56 0.0019 23.1 2.3 15 142-157 36-50 (62)
28 3dmc_A NTF2-like protein; stru 21.2 2.3E+02 0.008 20.3 6.6 24 133-157 72-96 (134)
29 3fh1_A Uncharacterized NTF2-li 20.9 2.2E+02 0.0074 19.7 5.6 25 133-158 76-100 (129)
30 3f9s_A Putative polyketide cyc 20.3 1.7E+02 0.0058 20.5 4.8 26 132-158 66-91 (146)
No 1
>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} SCOP: d.50.1.3 PDB: 1kn0_A
Probab=99.19 E-value=2.2e-11 Score=104.12 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=90.0
Q ss_pred chHHHHHHHhcCCCCCCCccCCCC---CCcceehhHHHHhhhccccC--CceeeeeeEEEc-----CCC-eEEEEEEEEE
Q 028375 91 RPLVEILRDLNKRIPDNIINPSDN---TSSTFISWYNANRMLSFYAP--GWCGEVRDVIFS-----ENG-SVTVVYRVTL 159 (210)
Q Consensus 91 RPLsEILrdL~kpvPd~~Ik~k~~---~sl~yIPW~~vnr~L~~~aP--gWsgEVrdVi~s-----dg~-~VtVvyRlTI 159 (210)
+=.+.|++.|++++|.+.|++|++ .++.||+.+.+....|.+.. ||+-+|.++... +++ .|.+.+.|.|
T Consensus 34 ee~~~iq~~L~~~lgpe~is~R~g~gg~kv~YIeg~kvI~lANeiFGFNGWSs~I~~~~vd~~d~~~gk~~v~~~aiVRV 113 (209)
T 1h2i_A 34 EEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRV 113 (209)
T ss_dssp HHHHHHHHHHHCCBCTTTEEEEECTTSCEEEEECHHHHHHHHHHHHCTTTEEEEEEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcccCchhheeccCCCCceEEEeeHHHHHHHHHhccCCCCCeeEEEEeeceeEeccCCeEEEEEEEEEEE
Confidence 457889999999999999999974 78999999999999997754 799999776432 233 2333333444
Q ss_pred EecCcceeeeecccccCC-CC----CCCChHHHHHHHHHHHHHHHhc--CccccccC
Q 028375 160 RGSDGEAHREATGTVSSS-DS----RITDPVAAAEEIAFCKACARFG--LGLYLYHE 209 (210)
Q Consensus 160 ~G~DgeitREatGta~~~-D~----~ygDpvsaAEamAFrRACArFG--LGLYLYhe 209 (210)
.=.||. +||++|..... .. .+...-+.|..+|||||.-.|| ||..||+-
T Consensus 114 tLkDGt-~~EdiG~G~~~n~~~kg~A~ekAKKeAvTDAlKRaLr~FGn~lGn~lydk 169 (209)
T 1h2i_A 114 QLKDGS-YHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDK 169 (209)
T ss_dssp EETTSC-EEEEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTGGGCH
T ss_pred EECCCC-EecceeeEEEecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh
Confidence 446786 79999986433 12 2335667789999999999999 99999984
No 2
>2zmu_A Fluorescent protein; GFP-like protein, luminescent protein, structural genomics, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: CFY; 1.65A {Fungia concinna} PDB: 2zmw_A* 3mgf_A*
Probab=58.81 E-value=11 Score=32.45 Aligned_cols=29 Identities=38% Similarity=0.661 Sum_probs=25.3
Q ss_pred cC-CceeeeeeEEEcCCCeEEEEEEEEEEec
Q 028375 133 AP-GWCGEVRDVIFSENGSVTVVYRVTLRGS 162 (210)
Q Consensus 133 aP-gWsgEVrdVi~sdg~~VtVvyRlTI~G~ 162 (210)
.| |.+|| |.+.|-||+..++..++|+.|.
T Consensus 83 ~peGyswe-Rt~~fEDGGv~t~~~~isleg~ 112 (223)
T 2zmu_A 83 FPEGLSWE-RSLEFEDGGSASVSAHISLRGN 112 (223)
T ss_dssp TTTCEEEE-EEEEETTSCEEEEEEEEEEETT
T ss_pred CCCCeeEE-EEEEECCCcEEEEEEEEEEECC
Confidence 45 58888 9999999999999999999863
No 3
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=49.76 E-value=49 Score=22.70 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=22.4
Q ss_pred cCCceeeeeeEEEcCCCeEEEEEEEEEEecCcc
Q 028375 133 APGWCGEVRDVIFSENGSVTVVYRVTLRGSDGE 165 (210)
Q Consensus 133 aPgWsgEVrdVi~sdg~~VtVvyRlTI~G~Dge 165 (210)
.|++..++.+++- +|+.|.|.++.+....+|.
T Consensus 66 ~~~~~~~~~~~~~-~gd~v~v~~~~~~~~~~G~ 97 (132)
T 3ebt_A 66 IAEMRLAPDEFIE-SGERIVVLGTRRVTAVNGR 97 (132)
T ss_dssp EEEEEEEEEEEEE-ETTEEEEEEEEEEEETTSC
T ss_pred CCceEEEEeEEEE-eCCEEEEEEEEEEEeCCCC
Confidence 4678888877776 5788888777764444554
No 4
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=48.57 E-value=26 Score=28.05 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=47.0
Q ss_pred CCccCCceeeeCCccccCCCCCCCCchHHHHHHHhcCCCCCC-CccCCCCCCcceehhHHHHhhhccccCCceeeeeeEE
Q 028375 66 KGVPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDN-IINPSDNTSSTFISWYNANRMLSFYAPGWCGEVRDVI 144 (210)
Q Consensus 66 ~~~~~~ny~vpld~~~~~~~~s~itRPLsEILrdL~kpvPd~-~Ik~k~~~sl~yIPW~~vnr~L~~~aPgWsgEVrdVi 144 (210)
|...-||...--..+........+.-++.+++....+.+|.. +++.. + +.--..|.+|| ++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~is~e~A~~~a~~~~pga~I~~ie----l------------e~~~G~~vYEV-e~~ 69 (174)
T 4exr_A 7 KEANASNNALKDEKNNENLMEQDFKVPYTDAINIFKDKYKDADIVDLS----L------------ERDLNKFVYTV-EGV 69 (174)
T ss_dssp ---------------CCCGGGCCCSSCHHHHHHHHHHHSTTCEEEEEE----E------------EEETTEEEEEE-EEE
T ss_pred ccccccchhhhccccchhhhhccCCCCHHHHHHHHHHHCCCCEEEEEE----E------------EEeCCEEEEEE-EEE
Confidence 333344444333332222333467889999999999999984 44432 1 11123377787 333
Q ss_pred EcCCCeEEEEEEEEEEecCcceeeeeccc
Q 028375 145 FSENGSVTVVYRVTLRGSDGEAHREATGT 173 (210)
Q Consensus 145 ~sdg~~VtVvyRlTI~G~DgeitREatGt 173 (210)
.+| ..|.+.|....|++.......
T Consensus 70 -~~g----~e~ev~IDA~tG~Vl~~~~e~ 93 (174)
T 4exr_A 70 -DDN----NEYKMKIDANTKDVLEDKTEK 93 (174)
T ss_dssp -CSS----EEEEEEEETTTCCEEEEEEEE
T ss_pred -ECC----EEEEEEEECCCCcEecccccc
Confidence 233 489999999999998776543
No 5
>2fgs_A Putative periplasmic protein; lipid binding protein, structural genomics, protein structure initiative, PSI, nysgxrc; 2.90A {Campylobacter jejuni}
Probab=37.76 E-value=36 Score=26.89 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=23.2
Q ss_pred cCCceeeeeeEEEcCCCeEEEEEEEEEEecCcce
Q 028375 133 APGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEA 166 (210)
Q Consensus 133 aPgWsgEVrdVi~sdg~~VtVvyRlTI~G~Dgei 166 (210)
-|.-+++...|....++...|.+.|||+|.-..+
T Consensus 78 ~P~atF~st~v~~~g~~~~~v~G~LTi~GvTkpV 111 (179)
T 2fgs_A 78 YPDMTFTMKKYEKIDNEKGKMTGTLTIAGVSKDI 111 (179)
T ss_dssp CCEEEEEEEEEEESSSSEEEEEEEEEETTEEEEE
T ss_pred CCEEEEEEEEEEECCCceEEEEEEEEECcEeEEE
Confidence 3556666666666434568999999999974333
No 6
>2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2; solute-binding protein; 1.45A {Streptomyces clavuligerus} PDB: 2wok_A 2wop_A*
Probab=37.49 E-value=26 Score=30.92 Aligned_cols=15 Identities=0% Similarity=-0.226 Sum_probs=8.2
Q ss_pred ceeeeEEecCCCCCC
Q 028375 44 GSVGLVYCSSHSSNT 58 (210)
Q Consensus 44 ~~~~~~~~~~~~~~~ 58 (210)
|...+.+|++.++++
T Consensus 6 ~~~~l~aCg~~~~~~ 20 (562)
T 2wol_A 6 RRPAPTTAGAGWDAG 20 (562)
T ss_dssp --CGGGSCCSCTTTT
T ss_pred cCccccccCCCCCCC
Confidence 444677898655433
No 7
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=37.30 E-value=98 Score=21.17 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=35.4
Q ss_pred hccccCCceeeeeeEEEcCCCeEEEEEEEEEEecCcceeeeecccccCCCCCCCChHHHHHHHHHHHHHHHhcCc
Q 028375 129 LSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGLG 203 (210)
Q Consensus 129 L~~~aPgWsgEVrdVi~sdg~~VtVvyRlTI~G~DgeitREatGta~~~D~~ygDpvsaAEamAFrRACArFGLG 203 (210)
|+.+++...+++.+..-.+. .-+.+++|+|.| ..+ +++|. --..||..|=++|..+++-+
T Consensus 13 L~q~~~~p~Y~~~~~~Gp~H-~~~F~~~v~v~g---~~~-~G~G~----------SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 13 LNEKRRGLKYELISETGGSH-DKRFVMEVEVDG---QKF-QGAGS----------NKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp HHHHSTTCCEEEEEEESCTT-SCEEEEEEEETT---EEE-EEEES----------SHHHHHHHHHHHHHHHHCTT
T ss_pred HHHcCCCCEEEEEEeeCCCC-CceEEEEEEECC---EEE-EEEEC----------CHHHHHHHHHHHHHHHHHcc
Confidence 33445677777755443333 345566777744 444 43332 35678888888888777644
No 8
>1wub_A Conserved hypothetical protein TT1927B; beta-barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: OTP; 1.65A {Thermus thermophilus} SCOP: b.61.6.1
Probab=37.06 E-value=33 Score=26.88 Aligned_cols=31 Identities=10% Similarity=-0.060 Sum_probs=22.5
Q ss_pred cCCceeeeeeEEEcCCCeEEEEEEEEEEecC
Q 028375 133 APGWCGEVRDVIFSENGSVTVVYRVTLRGSD 163 (210)
Q Consensus 133 aPgWsgEVrdVi~sdg~~VtVvyRlTI~G~D 163 (210)
-|.-+++...|....++...|.+.|||+|.-
T Consensus 77 ~P~~tF~st~v~~~g~~~~~v~G~LTi~GvT 107 (178)
T 1wub_A 77 YPEIRFVSTQIEPLGGNRYRIQGNLTIRDIT 107 (178)
T ss_dssp CCEEEEEEEEEEEEETTEEEEEEEEEETTEE
T ss_pred CCEEEEEEEEEEECCCCcEEEEEEEEECcEe
Confidence 4666777666665434579999999999973
No 9
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=36.36 E-value=92 Score=22.37 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=20.2
Q ss_pred HHhhhccccCCce-eeeeeEEEcCCCeEEEEEEEE
Q 028375 125 ANRMLSFYAPGWC-GEVRDVIFSENGSVTVVYRVT 158 (210)
Q Consensus 125 vnr~L~~~aPgWs-gEVrdVi~sdg~~VtVvyRlT 158 (210)
+.+++..+...|. .++..++- +|+.|.+.++++
T Consensus 51 ~~~~~~~~~~~~~~~~i~~~~a-~G~~vv~~~~~~ 84 (128)
T 3en8_A 51 LQALRSHHPGKPAGFEVRRIQG-EGNLWITEYSIS 84 (128)
T ss_dssp HHHHHHHTTCSCSEEEEEEEEE-ETTEEEEEEEEE
T ss_pred HHHHHHHCCCCCcceEEEEEEE-CCCEEEEEEEEe
Confidence 3334443333355 77766654 788888888876
No 10
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=33.06 E-value=3.6 Score=33.47 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=46.1
Q ss_pred hccccCCceeeeeeEEEc--CCCeEEEEEEEEEEecCcceeeeecccccCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 028375 129 LSFYAPGWCGEVRDVIFS--ENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGL 202 (210)
Q Consensus 129 L~~~aPgWsgEVrdVi~s--dg~~VtVvyRlTI~G~DgeitREatGta~~~D~~ygDpvsaAEamAFrRACArFGL 202 (210)
|-...|.|.|--++|+-+ ||.. .+.---+.++.+-+|..+++...-. ...|.+++-|..++-|||
T Consensus 15 LTtRLP~WAGvRQnv~GS~v~Grp-------V~PaNS~~l~y~tv~~S~lDtAAAA--AAsAAastar~ma~d~~~ 81 (140)
T 3iyn_Q 15 LTTRMPPWAGVRQNVMGSSIDGRP-------VLPANSTTLTYETVSGTPLETAASA--AASAAAATARGIVTDFAF 81 (140)
T ss_dssp CCCCCCCSSSCSSCCCCCCTTCSS-------CCCTTCGGGSSEEECCCCCCCCCTT--TTTHHHHTTTTTTTSCCC
T ss_pred eeccCccccchhccccccCCCCCc-------cCCCccceeeeeecCCCchhHHHHH--HHHHHHHHHHHHhhcccc
Confidence 556789999999999988 4433 3566667789999999888875433 334555555777777774
No 11
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=32.56 E-value=36 Score=27.62 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=17.7
Q ss_pred CChHHHHHHHHHHHHHHHhc
Q 028375 182 TDPVAAAEEIAFCKACARFG 201 (210)
Q Consensus 182 gDpvsaAEamAFrRACArFG 201 (210)
.||..-||-.|+++||.+.|
T Consensus 74 ~~~~~HAE~~Ai~~a~~~~~ 93 (197)
T 2g84_A 74 RCSAAHAEILALSLAQAKLD 93 (197)
T ss_dssp TCTTCCHHHHHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHHHHcC
Confidence 56889999999999999865
No 12
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=30.23 E-value=1.3e+02 Score=20.70 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=23.1
Q ss_pred CCceeeeeeEEEcCCCeEEEEEEEEEEecCcc
Q 028375 134 PGWCGEVRDVIFSENGSVTVVYRVTLRGSDGE 165 (210)
Q Consensus 134 PgWsgEVrdVi~sdg~~VtVvyRlTI~G~Dge 165 (210)
|++..++.+++- +|+.|.|.++++..-.+|.
T Consensus 57 ~~~~~~i~~~i~-~Gd~Vvv~~~~~~~~~~g~ 87 (112)
T 3f14_A 57 KGAVLTNDNVIQ-NENQIVIEGKCRYFDAEGK 87 (112)
T ss_dssp HTSEEEEEEEEE-CSSEEEEEEEEEEECTTSC
T ss_pred CCcEEEEEEEEE-eCCEEEEEEEEEEEeCCCC
Confidence 457889988777 7999999988876444443
No 13
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=28.42 E-value=45 Score=25.36 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHHHHHHHhc----Cccccc
Q 028375 182 TDPVAAAEEIAFCKACARFG----LGLYLY 207 (210)
Q Consensus 182 gDpvsaAEamAFrRACArFG----LGLYLY 207 (210)
.||..-||-.|+++|+.+.| -|..||
T Consensus 48 ~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly 77 (144)
T 2a8n_A 48 NDVTAHAEIAVIRMACEALGQERLPGADLY 77 (144)
T ss_dssp TCTTCCHHHHHHHHHHHHHTCSCCTTCEEE
T ss_pred CCCcCCHHHHHHHHHHHHcCCCccCCeEEE
Confidence 35888999999999999865 344555
No 14
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=27.24 E-value=2e+02 Score=21.71 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=36.3
Q ss_pred HHHhhhccccCCceeeeeeEEEcCCCeEEEEEEEEEEecCcceeeeecccccCCCCCCCChHHHHHHHHHHHHHHHhc
Q 028375 124 NANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFG 201 (210)
Q Consensus 124 ~vnr~L~~~aPgWsgEVrdVi~sdg~~VtVvyRlTI~G~DgeitREatGta~~~D~~ygDpvsaAEamAFrRACArFG 201 (210)
+.--+|..+|..-.+++.+..-.+. .-+.+++|+|.| ..+ ++.|. --+.||..|=++|+.+++
T Consensus 38 d~Ks~LQE~~q~p~Y~~v~~~Gp~H-~k~F~v~V~v~g---~~~-~G~G~----------SKK~AEq~AA~~AL~~L~ 100 (114)
T 2ljh_A 38 NTVAMLNELRHGLIYKLESQTGPVH-APLFTISVEVDG---QKY-LGQGR----------SKKVARIEAAATALRSFI 100 (114)
T ss_dssp CHHHHHHHHCSCCEEEEEEEECCSS-SCEEEEEEEETT---EEE-EEEES----------SHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHccCCeEEEEEeeCCCC-CCeEEEEEEECC---EEE-EeeeC----------CHHHHHHHHHHHHHHHHH
Confidence 4456677777665666644333233 345566777754 445 44442 245677777777776654
No 15
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=27.11 E-value=81 Score=21.53 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=20.0
Q ss_pred cCCceeeeeeEEEcCCCeEEEEEEEE
Q 028375 133 APGWCGEVRDVIFSENGSVTVVYRVT 158 (210)
Q Consensus 133 aPgWsgEVrdVi~sdg~~VtVvyRlT 158 (210)
.|+...++..++- +|+.|.+..++|
T Consensus 59 ~p~~~~~i~~~~~-~Gd~V~~~~~~~ 83 (117)
T 3ff2_A 59 WPQNHAEIKDAQQ-VGTYVLMREHVT 83 (117)
T ss_dssp CTTCEEEEEEEEE-ETTEEEEEEEEE
T ss_pred CCCceEEEEEEEE-ECCEEEEEEEEE
Confidence 5888999988877 799888876665
No 16
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=26.88 E-value=52 Score=26.07 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=22.2
Q ss_pred cCCceeeeeeEEEcCCCeEEEEEEEEEEecCcce
Q 028375 133 APGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEA 166 (210)
Q Consensus 133 aPgWsgEVrdVi~sdg~~VtVvyRlTI~G~Dgei 166 (210)
-|.-+++...+... |+...|.+.|||+|.-..+
T Consensus 102 ~P~atF~st~v~~~-g~~~~v~G~LTi~GvTkpv 134 (191)
T 1y0g_A 102 YPQATFTSTSVKKD-GDELDITGDLTLNGVTKPV 134 (191)
T ss_dssp CCEEEEEEEEEEEE-TTEEEEEEEEEETTEEEEE
T ss_pred CCeEEEEEEEEEEc-CCCEEEEEEEEECCEEEEE
Confidence 35666666666653 4448899999999974433
No 17
>2iqi_A Hypothetical protein XCC0632; structural genomics, PSI-2, protein structure initiative; 2.70A {Xanthomonas campestris PV} SCOP: c.51.6.2
Probab=26.20 E-value=2.2e+02 Score=21.77 Aligned_cols=50 Identities=28% Similarity=0.213 Sum_probs=33.5
Q ss_pred CeEEEEEEEEEEe-cCcce--eeeecccccCCCCCCCChHHHHHHHHHHHHHHH
Q 028375 149 GSVTVVYRVTLRG-SDGEA--HREATGTVSSSDSRITDPVAAAEEIAFCKACAR 199 (210)
Q Consensus 149 ~~VtVvyRlTI~G-~Dgei--tREatGta~~~D~~ygDpvsaAEamAFrRACAr 199 (210)
..+.|..+.+|.. .+|.+ +|.-.-+++..+..|. .+-+|-..|+.+.+.+
T Consensus 120 ~~a~v~~~~~L~~~~~~~~~~~~~f~~~~p~~~~~~~-a~V~A~~~a~~~la~~ 172 (192)
T 2iqi_A 120 PAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTA-AVAAAFEQALTQVTTE 172 (192)
T ss_dssp CEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSSSHH-HHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEEeCCCCeEEEEEEEEEEeECCCCCHH-HHHHHHHHHHHHHHHH
Confidence 5899999999986 46765 5666666766665533 5555666666665554
No 18
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=25.93 E-value=39 Score=25.92 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=13.9
Q ss_pred eeEEEcCCCeEEEEEEEE
Q 028375 141 RDVIFSENGSVTVVYRVT 158 (210)
Q Consensus 141 rdVi~sdg~~VtVvyRlT 158 (210)
.+|.| ||++|+|.++|.
T Consensus 79 invtf-dgdtvtvegqle 95 (106)
T 1qys_A 79 INVTF-DGDTVTVEGQLE 95 (106)
T ss_dssp EEEEE-ETTEEEEEEEC-
T ss_pred eeEEE-cCCeEEEEeEEc
Confidence 47888 899999999873
No 19
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=24.99 E-value=42 Score=27.67 Aligned_cols=52 Identities=21% Similarity=0.370 Sum_probs=24.7
Q ss_pred eeeCCccccCCCCCC-CCchHHHHHHHhcCCCCCCCccCCCCCCcceehhHHHHhhh
Q 028375 74 VVPLEKSFSSANSSY-MTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANRML 129 (210)
Q Consensus 74 ~vpld~~~~~~~~s~-itRPLsEILrdL~kpvPd~~Ik~k~~~sl~yIPW~~vnr~L 129 (210)
.++|+++.-..++.+ +-|+ +|+-.+--|.||--. +-+..|.|+-|.-+.|-+
T Consensus 22 ~~~i~~s~k~~~~e~~liRr-AEmYQ~YMK~iPIP~---~~~s~Ipf~sW~gL~~Si 74 (157)
T 1vk5_A 22 FSPLDTSHRDVADEGSLLRR-AEMYQDYMKQVPIPT---NRGSLIPFTSWVGLSISM 74 (157)
T ss_dssp --------------CTTHHH-HHHHHHHHHTSCCCS---SCCSCCCCSSHHHHHHHH
T ss_pred cccCCCcccccCcchhhhhH-HHHHHHHHHhCCCCc---ccCCcccchhHHHHHHHH
Confidence 677887766655554 4455 999888877665322 223468999998766544
No 20
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=24.95 E-value=1e+02 Score=21.44 Aligned_cols=28 Identities=14% Similarity=-0.034 Sum_probs=20.7
Q ss_pred ccCCceeeeeeEEEcCCCeEEEEEEEEEE
Q 028375 132 YAPGWCGEVRDVIFSENGSVTVVYRVTLR 160 (210)
Q Consensus 132 ~aPgWsgEVrdVi~sdg~~VtVvyRlTI~ 160 (210)
..|++..++.+++- +|+.|.|.++++-.
T Consensus 72 ~~~~~~~~~~~~~~-~gd~v~v~~~~~~~ 99 (140)
T 3ec9_A 72 EWDGYTFKLDALHD-AGDTVIGVGRYSGT 99 (140)
T ss_dssp HEEEEEEEEEEEEE-ETTEEEEEEEEEEE
T ss_pred hCCcceeEEEEEEE-cCCEEEEEEEEEEE
Confidence 35678888988877 68888887766544
No 21
>2a50_B ASFP595, GFP-like non-fluorescent chromoprotein FP595 CHAI; ASCP, fluorescent protein, photochromic prote reversible photoswitch; HET: NRQ; 1.30A {Anemonia sulcata} PDB: 2a53_B* 2a54_B* 2a56_B* 2a52_B* 3cfa_A* 3cfh_A* 3cff_A*
Probab=24.46 E-value=70 Score=26.31 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=23.8
Q ss_pred cCC-ceeeeeeEEEcCCCeEEEEEEEEEEe
Q 028375 133 APG-WCGEVRDVIFSENGSVTVVYRVTLRG 161 (210)
Q Consensus 133 aPg-WsgEVrdVi~sdg~~VtVvyRlTI~G 161 (210)
+|+ .+|| |.+.|-||+..++..++|+.|
T Consensus 20 fpeGyswe-Rt~~fEDGGv~t~~~~isleg 48 (168)
T 2a50_B 20 FPEGFTWE-RTTTYEDGGFLTAHQDTSLDG 48 (168)
T ss_dssp TTTCEEEE-EEEEETTSCEEEEEEEEEEET
T ss_pred CCCceeEE-EEEEECCCcEEEEEEEEEEEC
Confidence 464 6666 689999999999999999987
No 22
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=23.77 E-value=58 Score=25.98 Aligned_cols=26 Identities=46% Similarity=0.698 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHHHHHHHhc----Cccccc
Q 028375 182 TDPVAAAEEIAFCKACARFG----LGLYLY 207 (210)
Q Consensus 182 gDpvsaAEamAFrRACArFG----LGLYLY 207 (210)
.||..-||-.|+++|+.+.| -|..||
T Consensus 67 ~d~t~HAE~~AI~~a~~~~g~~~l~~~tlY 96 (171)
T 1wwr_A 67 KDPTAHAEMLAIKEACRRLNTKYLEGCELY 96 (171)
T ss_dssp TCTTCCHHHHHHHHHHHHHTCSCCTTEEEE
T ss_pred CCcccCHHHHHHHHHHHHcCCCccCceEEE
Confidence 45888999999999999865 245555
No 23
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=22.93 E-value=89 Score=25.99 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=38.6
Q ss_pred HHhhhccccCC--ceeeeee--EE--EcCCCeEEEEEEEEEEecCcceeeeecccccCCCCCCCChHHHHHHHHHHHHHH
Q 028375 125 ANRMLSFYAPG--WCGEVRD--VI--FSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACA 198 (210)
Q Consensus 125 vnr~L~~~aPg--WsgEVrd--Vi--~sdg~~VtVvyRlTI~G~DgeitREatGta~~~D~~ygDpvsaAEamAFrRACA 198 (210)
++|-.....|+ |+..+-. +. ..+|+ + ...-|++.-. -.+|.-+|-.-... +-+.+..+||++||.
T Consensus 6 ~~R~~~~~~p~~~w~~D~t~~d~~~~~~~g~-~-~r~~l~~~iD--~~SR~ivg~~~~~~-----~~~~~v~~aL~~a~~ 76 (327)
T 1bco_A 6 QQRTVEHLDAMQWINGDGYLHNVFVRWFNGD-V-IRPKTWFWQD--VKTRKILGWRCDVS-----ENIDSIRLSFMDVVT 76 (327)
T ss_dssp -----CCCCTTTEEEEEEEECSBCEECTTSC-E-ECCEEEEEEE--TTTCCEEEEEEESS-----CCHHHHHHHHHHHHH
T ss_pred eeccccccCCCcEEEecCCEEEEEEECCCCc-c-ceeEEEEEEE--CCCCcEEEEEEECC-----CCHHHHHHHHHHHHH
Confidence 45666777786 7655421 11 11333 1 1122333222 13777777542222 345677889999999
Q ss_pred HhcCcc--ccccC
Q 028375 199 RFGLGL--YLYHE 209 (210)
Q Consensus 199 rFGLGL--YLYhe 209 (210)
++|+-. .+|-|
T Consensus 77 ~~G~P~~~~i~sD 89 (327)
T 1bco_A 77 RYGIPEDFHITID 89 (327)
T ss_dssp HHCEESSCEEECC
T ss_pred hcCCCCCcEEEee
Confidence 999744 66644
No 24
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=22.59 E-value=1.4e+02 Score=21.04 Aligned_cols=27 Identities=30% Similarity=0.169 Sum_probs=20.0
Q ss_pred cccCCceeeeeeEEEcCCCeEEEEEEEE
Q 028375 131 FYAPGWCGEVRDVIFSENGSVTVVYRVT 158 (210)
Q Consensus 131 ~~aPgWsgEVrdVi~sdg~~VtVvyRlT 158 (210)
.-.|+...++.+++. +|+.|.|..+++
T Consensus 66 ~~~pd~~~~i~~~~~-~gd~v~~~~~~~ 92 (146)
T 3kkg_A 66 EGFPRLEVVVENVTV-EGDNVVVQARLT 92 (146)
T ss_dssp HHSTTCEEEEEEEEE-ETTEEEEEEEEE
T ss_pred HhCCCceeEEEEEEE-eCCEEEEEEEEE
Confidence 346888889988877 688877766554
No 25
>3n54_B Spore germination protein B3; A novel fold, lipid binding protein; 2.30A {Bacillus subtilis subsp}
Probab=21.79 E-value=93 Score=26.11 Aligned_cols=58 Identities=16% Similarity=0.051 Sum_probs=29.5
Q ss_pred CCCeEEEEEEEEEEecCcceeeeeccc-ccCCCCCCCChHHHHHHHHHHHHHH--------H-----hcCcccccc
Q 028375 147 ENGSVTVVYRVTLRGSDGEAHREATGT-VSSSDSRITDPVAAAEEIAFCKACA--------R-----FGLGLYLYH 208 (210)
Q Consensus 147 dg~~VtVvyRlTI~G~DgeitREatGt-a~~~D~~ygDpvsaAEamAFrRACA--------r-----FGLGLYLYh 208 (210)
+++.+.+...|.+.|. -.|..+. ..+.+...-.-++++.+..+++-|. + ||||.++|.
T Consensus 241 ~~~~~~~~i~i~~~g~----i~E~~~~~~~~~~~~~~~~le~~~~~~i~~~~~~~i~k~Q~~~~~D~~gfG~~~~~ 312 (350)
T 3n54_B 241 ENGKPVFHISVKTKGI----LTEDQNPNENSFSKSYLHRLENIFEKKLERDVKQVMDKLQHEYKTDPVFLSDHIRI 312 (350)
T ss_dssp CSSSEEEEEEEEEEEE----EECCCC-----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHHHH
T ss_pred ECCeEEEEEEEEEEEE----EEEcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 4566777777777775 3443331 1111211112355555555544443 2 789988874
No 26
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Probab=21.29 E-value=1.1e+02 Score=22.57 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=21.1
Q ss_pred cCCceeeeeeEEEcCCCeEEEEEEEE
Q 028375 133 APGWCGEVRDVIFSENGSVTVVYRVT 158 (210)
Q Consensus 133 aPgWsgEVrdVi~sdg~~VtVvyRlT 158 (210)
.|+...+|.+++- +|+.|.+.+++|
T Consensus 82 ~pd~~~~i~~iia-eGD~V~~~~~~~ 106 (148)
T 3g0k_A 82 SPDARQTIHRSFV-DGDHVITHTHVE 106 (148)
T ss_dssp CCSCEEEEEEEEE-ETTEEEEEEEEE
T ss_pred CCCceEEEEEEEE-ECCEEEEEEEEE
Confidence 5888999988877 799999988877
No 27
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=21.22 E-value=56 Score=23.07 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=12.7
Q ss_pred eEEEcCCCeEEEEEEE
Q 028375 142 DVIFSENGSVTVVYRV 157 (210)
Q Consensus 142 dVi~sdg~~VtVvyRl 157 (210)
+|+. ||++|+|.++|
T Consensus 36 nvtw-dgdtvtvegql 50 (62)
T 2gjh_A 36 NVTW-DGDTVTVEGQL 50 (62)
T ss_dssp EEEE-CSSCEEEEEEC
T ss_pred eeEE-cCCEEEEEeEE
Confidence 5666 89999999986
No 28
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=21.21 E-value=2.3e+02 Score=20.31 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=16.5
Q ss_pred cCCceee-eeeEEEcCCCeEEEEEEE
Q 028375 133 APGWCGE-VRDVIFSENGSVTVVYRV 157 (210)
Q Consensus 133 aPgWsgE-VrdVi~sdg~~VtVvyRl 157 (210)
.+++..+ +..++- +|+.|.|.++.
T Consensus 72 ~~~~~~~~v~~~~~-~G~~vvve~~~ 96 (134)
T 3dmc_A 72 HTGIQISSLDRVTS-NETTVVFEFRD 96 (134)
T ss_dssp TTCEEEEEEEEEEE-CSSEEEEEEEE
T ss_pred cCCceeEEEEEEEe-cCCEEEEEEEE
Confidence 3457777 766665 78888877664
No 29
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=20.87 E-value=2.2e+02 Score=19.74 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=19.2
Q ss_pred cCCceeeeeeEEEcCCCeEEEEEEEE
Q 028375 133 APGWCGEVRDVIFSENGSVTVVYRVT 158 (210)
Q Consensus 133 aPgWsgEVrdVi~sdg~~VtVvyRlT 158 (210)
.|+..+++.+++. +|+.|.+.++++
T Consensus 76 ~~~~~~~i~~~~~-~gd~v~~~~~~~ 100 (129)
T 3fh1_A 76 QPGTRFDLEETFV-AGDRATIRWRYW 100 (129)
T ss_dssp CTTCEEEEEEEEE-ETTEEEEEEEEE
T ss_pred CCCceEEEeEEEE-cCCEEEEEEEEE
Confidence 5777888877776 688888877664
No 30
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=20.27 E-value=1.7e+02 Score=20.54 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=18.1
Q ss_pred ccCCceeeeeeEEEcCCCeEEEEEEEE
Q 028375 132 YAPGWCGEVRDVIFSENGSVTVVYRVT 158 (210)
Q Consensus 132 ~aPgWsgEVrdVi~sdg~~VtVvyRlT 158 (210)
-.|+...++.+++- +|+.|.+..+++
T Consensus 66 ~~pd~~~~i~~~~~-~gd~v~~~~~~~ 91 (146)
T 3f9s_A 66 AFPDQCFDIQGLFA-DGDAVVMTWLWT 91 (146)
T ss_dssp HSTTCEEEEEEEEE-ETTEEEEEEEEE
T ss_pred hCCCcEEEEEEEEE-eCCEEEEEEEEE
Confidence 35788888877776 577776655544
Done!