BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028376
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2
Length = 1683
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 17/162 (10%)
Query: 4 EVVTISNSTKHRIESLSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHD 63
+++ ++N K + ++ + E CPIC +LG Q V CGH C +C + EQ +
Sbjct: 1409 QLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGS 1468
Query: 64 NKVKNEWVMCPTCRQRTDIGNIAYADDRQDKSCNSDMPHGVQDCEKGEESFTVQGSYGTK 123
++ + C CRQ T I+Y + + D+P V+GS+ TK
Sbjct: 1469 HRSS---IKCAICRQTTSHKEISYVFTSEKANQEEDIP--------------VKGSHSTK 1511
Query: 124 IEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNI 165
+EAV R ++ I+ DP AK LVFS+W DVLD++ A NN+
Sbjct: 1512 VEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNM 1553
>sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1
Length = 1674
Score = 93.6 bits (231), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 17/162 (10%)
Query: 4 EVVTISNSTKHRIESLSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHD 63
+++ ++N K + ++ + E CPIC +LG Q V CGH C +C + EQ +
Sbjct: 1400 QLLYLTNLEKSQDKTSGGINPEPCPICARQLGKQWAVLTCGHCFCNECTSIIIEQYSVGS 1459
Query: 64 NKVKNEWVMCPTCRQRTDIGNIAYADDRQDKSCNSDMPHGVQDCEKGEESFTVQGSYGTK 123
++ + C CRQ T ++Y + + D+P V+GS+ TK
Sbjct: 1460 HRSS---IKCAICRQTTSHKEVSYVFTSEKANQEDDIP--------------VKGSHSTK 1502
Query: 124 IEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNI 165
+EAV R ++ I+ DP AK LVFS+W DVLD++ A NN+
Sbjct: 1503 VEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNM 1544
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 26/205 (12%)
Query: 8 ISNSTKHRIESLSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVK 67
++N +H + L + C IC++ + Q + CGH C C E L H +
Sbjct: 1075 LTNLYEHIV--LKAESHQICIICRDII-KQGFITTCGHLYCSFCL----EAWLKHSSS-- 1125
Query: 68 NEWVMCPTCRQRTDIGNIAYADDRQDKSCNSDMPHGVQDCEKGEE-----------SFTV 116
CP C+ + + N Y + +D + G ++ E + +
Sbjct: 1126 -----CPMCKTKLNKNNAYYIGESRDIYSRQEFVTGFNKRDERLEILDDEAYRQISNMEL 1180
Query: 117 QGSYGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHK 176
+ S+G+KI+ +++ +L++K + K++VFS W DVLDVL +F AN I I+ G++
Sbjct: 1181 KESFGSKIDTISKHLLYLKHNELYPKVVVFSQWLDVLDVLHKSFEANGIVFIRFDGKSKN 1240
Query: 177 LPSANLQHRNALQKELTRHMPSSQS 201
+ +LQ LT H S S
Sbjct: 1241 TCLKRFKEERSLQV-LTLHARSQSS 1264
>sp|Q4IJ84|RAD5_GIBZE DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1
Length = 1154
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 23/179 (12%)
Query: 1 MTEEVVTISNST--KHRIESLSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQ 58
+T++ SN T H +E + E CP+C E+ N + V C H C KC
Sbjct: 872 VTDKASKESNQTFGAHALEQIRDEAENECPLCFEEPMNDQTVTGCWHSACKKCLLD---- 927
Query: 59 RLIHDNKVKNEWVMCPTCRQ---RTDIGNIAYADDRQDKSCNSDMPHGVQDCEKGEESFT 115
I K E C +CR+ + D+ + DD +SDM +K S
Sbjct: 928 -YIKHQTDKAEVPRCFSCREPINKRDLFEVVRHDD------DSDM-----MSKKPRISLQ 975
Query: 116 VQG--SYGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKG 172
G + K+ A+ + ++ PK K +VFS + L ++E A NI +++ G
Sbjct: 976 RVGVNASSAKVVALMSELRALRREHPKMKSVVFSQFTSFLSLIEPALTRANIKFLRLDG 1034
>sp|P0CQ67|RAD5_CRYNB DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1
Length = 1198
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 22/171 (12%)
Query: 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82
D C +C ++ ++ ++ C H +C C I + +N+ CP+C +
Sbjct: 916 DTPICELCSNEMFDE-VLLPCYHRSCQDCIV-----EWIGTCEDQNKIASCPSCGK---- 965
Query: 83 GNIAYAD----DRQDKSCNS---DMPHGVQDCEKGEESFTVQGS-----YGTKIEAVTRR 130
G I AD R+ K N P G K TV TK+ A+ R+
Sbjct: 966 GPIKLADLRSVQRRHKRVNPITDAYPGGRDPNSKSSNDTTVTLGKVDLVTSTKLRALLRQ 1025
Query: 131 ILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSAN 181
+ I+ DPKAK LVFS + LD++E I ++ G + AN
Sbjct: 1026 LEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRAN 1076
>sp|P0CQ66|RAD5_CRYNJ DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3
SV=1
Length = 1198
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 22/192 (11%)
Query: 2 TEEVVTISNSTKHRIESLSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLI 61
T E V + + K E + D C +C ++ ++ ++ C H +C C I
Sbjct: 895 TPEDVDKAYAAKVLKELGEQEDTPICELCSNEMFDE-VLLPCYHRSCQDCIV-----EWI 948
Query: 62 HDNKVKNEWVMCPTCRQRTDIGNIAYAD----DRQDKSCNS---DMPHGVQDCEKGEESF 114
+ +N+ CP+C + G I AD R+ K N P G K
Sbjct: 949 GTCEDQNKIASCPSCGK----GPIKLADLRSVQRRHKRVNPITDAYPGGRDPNLKSSNDT 1004
Query: 115 TVQGS-----YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIK 169
TV TK+ A+ R++ I+ DPKAK LVFS + LD++E I ++
Sbjct: 1005 TVTLGKVDLVTSTKLRALLRQLEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLR 1064
Query: 170 MKGENHKLPSAN 181
G + AN
Sbjct: 1065 FDGTMSQAQRAN 1076
>sp|Q7S1P9|RAD5_NEUCR DNA repair protein rad-5 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rad-5
PE=3 SV=2
Length = 1222
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 6/166 (3%)
Query: 7 TISNSTKHRIESLSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKV 66
T +N H + + CPIC E+ + V C H C KC I
Sbjct: 941 TNNNFGAHVLRQIRDEAVNECPICAEEPMIDQAVTGCWHSACKKCLLDY-----IKHQTD 995
Query: 67 KNEWVMCPTCRQRTDIGNIAYADDRQDKSCNSDMPHGVQDCEKGEESFTVQGSYGTKIEA 126
+NE C CR+ +I +I D S P + + S KI A
Sbjct: 996 RNEVPRCFQCREHINIRDIFEVIRHDDDLETSSTPGASPEPRISLQRVGANDS-SAKIVA 1054
Query: 127 VTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKG 172
+ + ++ PK K LV S + L ++ A + I+ +++ G
Sbjct: 1055 LISHLRTLRQEHPKMKSLVISQFTSFLSLISSALTRHKISFLRLDG 1100
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5 PE=3
SV=2
Length = 1190
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 24 EETCPICQEK---LGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKN-EWVMCPTCRQR 79
E C IC + LG + CGH C C D + KN + +CP CR+
Sbjct: 913 ESECSICTQSPIPLGEMALT-PCGHAYCLNCVLEH------FDFQEKNSQKPLCPNCREP 965
Query: 80 TDIGNIAYADDRQDKSCNSDMPHGVQDCEKGEESFTVQ------GSYGTKIEAVTRRILW 133
I R D S H Q+ E ++F Q +KI+ + +
Sbjct: 966 ISKYKIFKLRHR-DTSVKEIRFHTKQEMEDPSQNFKFQLYLYDPTKTSSKIQCLINHLKI 1024
Query: 134 IKSTDPKAKILVFSSWNDVLDVLEHAF---IANNITCIKMKG 172
+K P +++VFS ++ LD++E+ I+N+ K G
Sbjct: 1025 LKEQSPNEQVVVFSQFSSYLDIIENELKIQISNDFVVYKFDG 1066
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 34/178 (19%)
Query: 16 IESLSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPT 75
+E L K ++ CPIC E L ++ C H C +C A N +CP
Sbjct: 783 VEELRKGEQGECPICLEAL-EDAVLTPCAHRLCRECLLASWR------NSTSG---LCPV 832
Query: 76 CRQRTDIGNIAYADDRQDKSCNSDMPHGVQDCEKGEESFTVQGSYGTKIEAVTRRILWIK 135
CR + A D EK V+ S KI A+ + ++
Sbjct: 833 CRNTVSKQELITAPTESRFQV---------DVEKN----WVESS---KITALLEELEGLR 876
Query: 136 STDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELT 193
S+ K+ ++FS W LD+L+ NN + +++ G + + Q R + KE +
Sbjct: 877 SSGSKS--ILFSQWTAFLDLLQIPLSRNNFSFVRLDG------TLSQQQREKVLKEFS 926
>sp|P32849|RAD5_YEAST DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD5 PE=1 SV=1
Length = 1169
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 25/153 (16%)
Query: 27 CPICQ-EKLGNQKMVF-QCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGN 84
C IC E + K +F +CGH C KC F E + KN + CP CR + D
Sbjct: 914 CSICTTEPMDLDKALFTECGHSFCEKCLFEYIEFQ-----NSKNLGLKCPNCRNQIDACR 968
Query: 85 IAYADDRQDKSCNSDM-PHGVQDCEKGEESFTVQGSYGTKIEAVTRRILWIKSTDPKAKI 143
+ S N + P+ S +KI A+ + + ++ + ++
Sbjct: 969 LLALVQTNSNSKNLEFKPYS-------------PASKSSKITALLKELQLLQDSSAGEQV 1015
Query: 144 LVFSSWNDVLDVLE----HAFIANNITCIKMKG 172
++FS ++ LD+LE H F + K G
Sbjct: 1016 VIFSQFSTYLDILEKELTHTFSKDVAKIYKFDG 1048
>sp|Q6CJM4|RAD5_KLULA DNA repair protein RAD5 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAD5 PE=3 SV=1
Length = 1114
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 40 VFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIAYADDRQDKSCNSD 99
+ +C H C C E NK + + CP CR N+ +
Sbjct: 874 ITECLHTFCEPCLAEYIE---FQQNKKLS--INCPYCRMPISEANVLKLKE--------- 919
Query: 100 MPHGVQDCEKGEESFTVQGSY-GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLE 157
D E+G E + + TKI+A+ R + I+ T P +I+VFS ++ LD+LE
Sbjct: 920 ----PIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILE 974
>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1
Length = 954
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 17/53 (32%)
Query: 26 TCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
TCPIC + K+VFQCGH +C C A+T +CP CRQ
Sbjct: 909 TCPICIDD--QIKLVFQCGHGSCPDCSTALT---------------VCPICRQ 944
>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3
Length = 1013
Score = 38.9 bits (89), Expect = 0.028, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 17/53 (32%)
Query: 26 TCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
TCPIC + + ++VFQCGH C C A++ CP CRQ
Sbjct: 968 TCPICIDS--HIRLVFQCGHGACAPCGSALSA---------------CPICRQ 1003
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81
D+ CPIC E + ++ QCGH C C +++E D++++ CP CRQ D
Sbjct: 12 DQLQCPICLEVF-KEPLMLQCGHSYCKNCLDSLSEHL---DSELR-----CPVCRQSVD 61
>sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus GN=Mib2 PE=2
SV=2
Length = 971
Score = 38.1 bits (87), Expect = 0.040, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 17/53 (32%)
Query: 26 TCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
TCPIC + + ++VFQCGH C C A+ CP CRQ
Sbjct: 926 TCPICIDS--HIRLVFQCGHGACAPCGAALNA---------------CPICRQ 961
>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus musculus GN=Mib2 PE=1 SV=2
Length = 973
Score = 38.1 bits (87), Expect = 0.040, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 17/53 (32%)
Query: 26 TCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
TCPIC + + ++VFQCGH C C A+ CP CRQ
Sbjct: 928 TCPICIDS--HIRLVFQCGHGACAPCGAALNA---------------CPICRQ 963
>sp|Q9LY87|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2
PE=1 SV=1
Length = 468
Score = 38.1 bits (87), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 19/56 (33%)
Query: 23 DEETCPICQEKLGNQK-MVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCR 77
D + CPIC L N K M F CGH TCC+C + MCP CR
Sbjct: 421 DNQLCPIC---LSNPKDMAFGCGHQTCCEC---------------GPDLQMCPICR 458
>sp|Q54FC5|Y0965_DICDI TNF receptor-associated factor family protein DDB_G0290965
OS=Dictyostelium discoideum GN=DDB_G0290965 PE=3 SV=1
Length = 575
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 14/68 (20%)
Query: 16 IESLSKADEETCPICQEKLGNQKMVFQC--GHFTCCKCFFAMTEQRLIHDNKVKNEWVMC 73
IESL K ++ +CPIC E + +K +FQC GHF C +C+ E+ L K+K E C
Sbjct: 16 IESLQKKNKYSCPICFEFIY-KKSIFQCKSGHFACKECW----EKSL----KIKKE---C 63
Query: 74 PTCRQRTD 81
CR + +
Sbjct: 64 MICRSKVN 71
>sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis
GN=sh3rf1 PE=2 SV=1
Length = 861
Score = 37.4 bits (85), Expect = 0.068, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 27 CPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83
CP+C E+L V C H C +C + R NE + CP CR + G
Sbjct: 12 CPVCLERLDASAKVLPCQHTFCKRCLLGIVSSR--------NE-LRCPECRTLVECG 59
>sp|Q865W2|TRI50_PIG E3 ubiquitin-protein ligase TRIM50 OS=Sus scrofa GN=TRIM50 PE=2
SV=1
Length = 486
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81
D CP+C E + ++ QCGH C C +++ D++++ CP CRQ D
Sbjct: 12 DRLQCPVCLEVF-KEPLMLQCGHSYCKGCLLSLSRHL---DSELR-----CPVCRQEVD 61
>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1
Length = 1030
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 17/56 (30%)
Query: 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
++ CP+C ++L N M+F CGH TC C M+E CP CR+
Sbjct: 983 EQTMCPVCLDRLKN--MIFMCGHGTCQLCGDRMSE---------------CPICRK 1021
>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2
SV=1
Length = 1011
Score = 37.0 bits (84), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 17/56 (30%)
Query: 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
++ CP+C ++L N M+F CGH TC C M+E CP CR+
Sbjct: 960 EQTMCPVCLDRLKN--MIFMCGHGTCQLCGDRMSE---------------CPICRK 998
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD5 PE=3 SV=1
Length = 1084
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 23 DEETCPIC-QEKLGNQKMVF-QCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRT 80
+E C IC Q + +MV C H C C + L ++K E +CP CR
Sbjct: 812 EENECSICTQVPIPYSEMVVTPCAHTFCLSCIL----EHLDFQKELKKE-KLCPNCRSPI 866
Query: 81 DIGNIAYADDRQDKSCNSDMPHGVQDCEKGEESFTV----QGSYGTKIEAVTRRILWIKS 136
+ + Q N H +D + SF + +KI+A+ R + + S
Sbjct: 867 SKYQL-FRIRNQPTKGNEIRFHTQKDA--PDYSFQLYLYDPNRSSSKIQALVRHLKALHS 923
Query: 137 TDPKAKILVFSSWNDVLDVLE 157
P +K++VFS ++ LD+++
Sbjct: 924 QSPNSKVIVFSQFSSYLDIIQ 944
>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1
Length = 1006
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 17/56 (30%)
Query: 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
++ CP+C ++L N M+F CGH TC C M+E CP CR+
Sbjct: 959 EQTMCPVCLDRLKN--MIFLCGHGTCQLCGDRMSE---------------CPICRK 997
>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1
Length = 1006
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 17/56 (30%)
Query: 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
++ CP+C ++L N M+F CGH TC C M+E CP CR+
Sbjct: 959 EQTMCPVCLDRLKN--MIFLCGHGTCQLCGDRMSE---------------CPICRK 997
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.12 PE=3 SV=1
Length = 897
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 38/187 (20%)
Query: 16 IESLSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPT 75
IE ++ + C +C + + CGHFTC +C + Q+ + CP
Sbjct: 595 IERIATLQDFNCSVCLDPCLAPVFIIPCGHFTCQECMSMLVGQK-YGSSSTSTIIAKCPM 653
Query: 76 CRQRTDIGNIAYADDRQDKSCNSDMPHGVQDCEKGEE-----SFTVQGS----------- 119
CR GNI D D + + HG + K E SF+ Q S
Sbjct: 654 CR-----GNIV-QDSLVDATILQAI-HGPLNSLKQLELDMNQSFSEQESIKLRWENRIDQ 706
Query: 120 -----YG---------TKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNI 165
+G +K+ + IL I + KILV+S ++ L ++ H NI
Sbjct: 707 MFTKKFGKRASEWKSSSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLENI 766
Query: 166 TCIKMKG 172
++ G
Sbjct: 767 RHVRYDG 773
>sp|A5D7F8|SH3R1_BOVIN E3 ubiquitin-protein ligase SH3RF1 OS=Bos taurus GN=SH3RF1 PE=2
SV=1
Length = 840
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 27 CPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCR 77
CP+C E+L V C H C +C + R NE + CP CR
Sbjct: 12 CPVCLERLDASAKVLPCQHTFCKRCLLGIVGSR--------NE-LRCPECR 53
>sp|Q9SS90|RGLG1_ARATH E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1
PE=1 SV=1
Length = 489
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 20/61 (32%)
Query: 19 LSKADE-ETCPICQEKLGNQK-MVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTC 76
+S AD+ + CPIC L N K M F CGH TCC+C + +CP C
Sbjct: 437 MSSADDIQLCPIC---LSNPKNMAFGCGHQTCCEC---------------GPDLKVCPIC 478
Query: 77 R 77
R
Sbjct: 479 R 479
>sp|Q6NRD3|SH3R1_XENLA E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus laevis GN=sh3rf1
PE=2 SV=1
Length = 826
Score = 36.2 bits (82), Expect = 0.15, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 27 CPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83
CP+C E+L V C H C +C + R + + CP CR + G
Sbjct: 12 CPVCLERLDASAKVLPCQHTFCKRCLLGIVSSR---------KELRCPECRTLVECG 59
>sp|Q587N7|TRIM5_CHLAE Tripartite motif-containing protein 5 OS=Chlorocebus aethiops
GN=TRIM5 PE=2 SV=1
Length = 515
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 19 LSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
L+ +E TCPIC E L + + CGH C C A ++ +++ K E CP CR
Sbjct: 7 LNVKEEVTCPICLELL-TEPLSLPCGHSFCQACITANHKESMLY----KEEERSCPVCRI 61
Query: 79 RTDIGNI 85
NI
Sbjct: 62 SYQPENI 68
>sp|Q8IYM9|TRI22_HUMAN E3 ubiquitin-protein ligase TRIM22 OS=Homo sapiens GN=TRIM22 PE=1
SV=1
Length = 498
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 24 EETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83
E TCPIC E L + + CGH C C A ++ +I + CP C+ R G
Sbjct: 12 EVTCPICLELL-TEPLSLDCGHSFCQACITAKIKESVI----ISRGESSCPVCQTRFQPG 66
Query: 84 NI 85
N+
Sbjct: 67 NL 68
>sp|Q5RBR0|SH3R1_PONAB E3 ubiquitin-protein ligase SH3RF1 OS=Pongo abelii GN=SH3RF1 PE=2
SV=1
Length = 888
Score = 36.2 bits (82), Expect = 0.16, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 27 CPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCR 77
CP+C E+L V C H C +C + R NE + CP CR
Sbjct: 12 CPVCLERLDASAKVLPCQHTFCKRCLLGIVGSR--------NE-LRCPECR 53
>sp|Q5C8U4|TRIM5_CERPY Tripartite motif-containing protein 5 OS=Cercopithecus
pygerythrus GN=TRIM5 PE=2 SV=1
Length = 515
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82
+E TCPIC E L + + CGH C C A ++ +++ K E CP CR
Sbjct: 11 EEVTCPICLELL-TEPLSLPCGHSLCQACITANHKESMLY----KEEERSCPVCRISYQP 65
Query: 83 GNI 85
NI
Sbjct: 66 ENI 68
>sp|Q71F54|SH3R1_RAT E3 ubiquitin-protein ligase SH3RF1 OS=Rattus norvegicus GN=Sh3rf1
PE=1 SV=1
Length = 894
Score = 36.2 bits (82), Expect = 0.18, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 27 CPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCR 77
CP+C E+L V C H C +C + R NE + CP CR
Sbjct: 12 CPVCLERLDASAKVLPCQHTFCKRCLLGIVGSR--------NE-LRCPECR 53
>sp|Q69ZI1|SH3R1_MOUSE E3 ubiquitin-protein ligase SH3RF1 OS=Mus musculus GN=Sh3rf1 PE=1
SV=2
Length = 892
Score = 36.2 bits (82), Expect = 0.18, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 27 CPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCR 77
CP+C E+L V C H C +C + R NE + CP CR
Sbjct: 12 CPVCLERLDASAKVLPCQHTFCKRCLLGIVGSR--------NE-LRCPECR 53
>sp|Q7Z6J0|SH3R1_HUMAN E3 ubiquitin-protein ligase SH3RF1 OS=Homo sapiens GN=SH3RF1 PE=1
SV=2
Length = 888
Score = 36.2 bits (82), Expect = 0.18, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 27 CPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCR 77
CP+C E+L V C H C +C + R NE + CP CR
Sbjct: 12 CPVCLERLDASAKVLPCQHTFCKRCLLGIVGSR--------NE-LRCPECR 53
>sp|Q32LN5|RN138_BOVIN E3 ubiquitin-protein ligase RNF138 OS=Bos taurus GN=RNF138 PE=2
SV=1
Length = 245
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 24/85 (28%)
Query: 17 ESLSKA-----DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWV 71
E LS A D+ CP+CQE L C H C KCF + IH
Sbjct: 3 EELSAATSYTEDDFYCPVCQEVLKTPVRTAACQHVFCRKCFLTAMRESGIH--------- 53
Query: 72 MCPTCRQRTDIGNIAYADDRQDKSC 96
CP CR GN+ R++++C
Sbjct: 54 -CPLCR-----GNVT----RRERAC 68
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 32/160 (20%)
Query: 16 IESLSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPT 75
I+ L + + CPIC E + ++ C H C +C +T R +CP
Sbjct: 1029 IQDLRDGNSKECPICLES-ADDPVLTPCAHRMCRECL--LTSWR-------SPSCGLCPI 1078
Query: 76 CR---QRTDIGNIAYADDRQDKSCNSDMPHGVQDCEKGEESFTVQGSYGTKIEAVTRRIL 132
CR +RT++ SC +D V + +ES +K+ + + +
Sbjct: 1079 CRTILKRTEL-----------ISCPTDSIFRVDVVKNWKES--------SKVSELLKCLE 1119
Query: 133 WIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKG 172
IK + K +VFS W LD+LE ++ G
Sbjct: 1120 KIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDG 1159
>sp|Q5D7I3|TRIM5_ERYPA Tripartite motif-containing protein 5 OS=Erythrocebus patas
GN=TRIM5 PE=2 SV=1
Length = 495
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 19 LSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
L+ +E TCPIC E L + + CGH C C A ++ +++ K E CP CR
Sbjct: 7 LNVKEEVTCPICLELL-TEPLSLPCGHSFCQACITANHKKSMLY----KEEERSCPVCRI 61
Query: 79 RTDIGNI 85
NI
Sbjct: 62 SYQPENI 68
>sp|Q5C8U3|TRIM5_CERTA Tripartite motif-containing protein 5 OS=Cercopithecus tantalus
GN=TRIM5 PE=2 SV=1
Length = 515
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82
+E TCPIC E L + + CGH C C A ++ +++ K E CP CR
Sbjct: 11 EEVTCPICLELL-TEPLSLPCGHSFCQACITANHKESMLY----KEEERSCPVCRISYQP 65
Query: 83 GNI 85
NI
Sbjct: 66 ENI 68
>sp|Q3U827|RN180_MOUSE E3 ubiquitin-protein ligase RNF180 OS=Mus musculus GN=Rnf180 PE=1
SV=2
Length = 592
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 52/141 (36%), Gaps = 27/141 (19%)
Query: 6 VTISN--STKHRIESLSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHD 63
+T+SN ST E + D C +C + N M + C H C C + L D
Sbjct: 409 MTVSNEMSTDEETEFPEEKDSYMCAVCLDVYFNPYMCYPCHHIFCEPCL-----RTLAKD 463
Query: 64 NKVKNEWVMCPTCRQ-------RTDIGNIA-------YADDRQDKSCNSDMPHGVQDCEK 109
N CP CR +T++ N Y +Q +S + C K
Sbjct: 464 NPASTP---CPLCRTIISRVFLQTELNNATKTFFTKEYLKIKQSFQKSSSAKWPLPSCRK 520
Query: 110 GEESFTVQGSYGTKIEAVTRR 130
G F + G + + VTRR
Sbjct: 521 G---FHLFGGFHRRAAPVTRR 538
>sp|Q5BN31|TRIM5_SAIBB Tripartite motif-containing protein 5 OS=Saimiri boliviensis
boliviensis GN=TRIM5 PE=2 SV=1
Length = 494
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 20 SKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCR 77
S +E TCPIC E L + + CGH C C A ++ ++H + CP CR
Sbjct: 8 SIKEEVTCPICLELL-TEPLSLDCGHSFCQACITANHKESMLHQGERS-----CPLCR 59
>sp|Q5D7I0|TRIM5_SAISC Tripartite motif-containing protein 5 OS=Saimiri sciureus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 20 SKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCR 77
S +E TCPIC E L + + CGH C C A ++ ++H + CP CR
Sbjct: 8 SIKEEVTCPICLELL-TEPLSLDCGHSFCQACITANHKESMLHQGERS-----CPLCR 59
>sp|Q5C8T6|TRIM5_GORGO Tripartite motif-containing protein 5 OS=Gorilla gorilla gorilla
GN=TRIM5 PE=2 SV=1
Length = 493
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82
+E TCPIC E L Q + CGH C C A E+ ++ + CP CR
Sbjct: 11 EEVTCPICLELL-TQPLSLDCGHSFCQACLTANHEKSMLDKGESS-----CPVCRISYQP 64
Query: 83 GNI 85
NI
Sbjct: 65 ENI 67
>sp|P40072|SLX8_YEAST E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX8
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SLX8 PE=1 SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 12 TKHRIESLSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWV 71
TK + A + CPIC E M CGH CC C F M ++ ++ ++
Sbjct: 191 TKEAPKEYGAAKDYRCPICFEPPETALMTL-CGHVFCCPCLFQM-----VNSSRTCRQFG 244
Query: 72 MCPTCRQRTDIGNI 85
C CR + + ++
Sbjct: 245 HCALCRSKVYLKDV 258
>sp|Q0PF16|TRIM5_MACMU Tripartite motif-containing protein 5 OS=Macaca mulatta GN=TRIM5
PE=1 SV=2
Length = 497
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 19 LSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
L+ +E TCPIC E L + + CGH C C A ++ +++ ++ CP CR
Sbjct: 7 LNVKEEVTCPICLELL-TEPLSLHCGHSFCQACITANHKKSMLYKEGERS----CPVCRI 61
Query: 79 RTDIGNI 85
NI
Sbjct: 62 SYQPENI 68
>sp|Q2YEN2|TRIM5_MACAS Tripartite motif-containing protein 5 OS=Macaca assamensis
GN=TRIM5 PE=3 SV=1
Length = 497
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 19 LSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
L+ +E TCPIC E L + + CGH C C A ++ +++ ++ CP CR
Sbjct: 7 LNVKEEVTCPICLELL-TEPLSLHCGHSFCQACITANHKKSMLYKEGERS----CPVCRI 61
Query: 79 RTDIGNI 85
NI
Sbjct: 62 SYQPENI 68
>sp|Q5D7I2|TRIM5_PITPI Tripartite motif-containing protein 5 OS=Pithecia pithecia
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCR 77
+E TCPIC E L + + CGH C C A ++ ++H + CP CR
Sbjct: 11 EEVTCPICLELL-TEPLSLDCGHSFCQACITANHKKSMLHQGERS-----CPLCR 59
>sp|Q587N6|TRIM5_MACFA Tripartite motif-containing protein 5 OS=Macaca fascicularis
GN=TRIM5 PE=2 SV=1
Length = 495
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 19 LSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
L+ +E TCPIC E L + + CGH C C A ++ +++ ++ CP CR
Sbjct: 7 LNVKEEVTCPICLELL-TEPLSLHCGHSFCQACITANHKKSMLYKEGERS----CPVCRI 61
Query: 79 RTDIGNI 85
NI
Sbjct: 62 SYQPENI 68
>sp|Q2YEN0|TRIM5_MACNE Tripartite motif-containing protein 5 OS=Macaca nemestrina
GN=TRIM5 PE=3 SV=1
Length = 495
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 19 LSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78
L+ +E TCPIC E L + + CGH C C A ++ +++ ++ CP CR
Sbjct: 7 LNVKEEVTCPICLELL-TEPLSLHCGHSFCQACITANHKKSMLYKEGERS----CPVCRI 61
Query: 79 RTDIGNI 85
NI
Sbjct: 62 SYQPENI 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,373,042
Number of Sequences: 539616
Number of extensions: 2846496
Number of successful extensions: 6874
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 203
Number of HSP's that attempted gapping in prelim test: 6794
Number of HSP's gapped (non-prelim): 270
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)