Query 028376
Match_columns 210
No_of_seqs 225 out of 2198
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 17:23:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ecy_A TNF receptor-associated 99.3 2E-12 6.9E-17 83.2 4.3 53 22-85 13-65 (66)
2 2ysl_A Tripartite motif-contai 99.3 2.1E-12 7.2E-17 84.6 3.3 55 22-85 18-72 (73)
3 2djb_A Polycomb group ring fin 99.3 2.6E-12 8.9E-17 84.1 3.4 53 22-86 13-66 (72)
4 1t1h_A Gspef-atpub14, armadill 99.2 6.8E-12 2.3E-16 83.3 4.5 54 22-86 6-59 (78)
5 1g25_A CDK-activating kinase a 99.2 7.1E-12 2.4E-16 80.3 4.3 55 23-87 2-60 (65)
6 2yur_A Retinoblastoma-binding 99.2 9E-12 3.1E-16 82.0 4.8 52 22-83 13-65 (74)
7 2ct2_A Tripartite motif protei 99.2 1E-11 3.5E-16 84.2 5.1 56 22-85 13-71 (88)
8 3ng2_A RNF4, snurf, ring finge 99.2 4.3E-12 1.5E-16 82.6 2.7 57 19-86 5-67 (71)
9 2xeu_A Ring finger protein 4; 99.2 7.6E-12 2.6E-16 79.6 3.7 54 23-87 2-61 (64)
10 2ecv_A Tripartite motif-contai 99.2 2E-11 7E-16 82.0 5.3 58 22-85 17-74 (85)
11 2ecw_A Tripartite motif-contai 99.2 4.1E-11 1.4E-15 80.4 6.5 59 22-86 17-75 (85)
12 3ztg_A E3 ubiquitin-protein li 99.2 2.4E-11 8.1E-16 83.2 5.4 49 22-80 11-60 (92)
13 2d8t_A Dactylidin, ring finger 99.2 5.3E-12 1.8E-16 82.4 1.9 52 21-84 12-63 (71)
14 3lrq_A E3 ubiquitin-protein li 99.2 1.3E-11 4.5E-16 86.0 3.5 53 23-86 21-74 (100)
15 4ayc_A E3 ubiquitin-protein li 99.2 1.3E-11 4.3E-16 91.1 3.3 47 24-82 53-99 (138)
16 2ecm_A Ring finger and CHY zin 99.2 3.1E-11 1.1E-15 74.5 4.5 50 21-81 2-54 (55)
17 2ysj_A Tripartite motif-contai 99.2 3.5E-11 1.2E-15 76.5 4.8 46 22-76 18-63 (63)
18 1v87_A Deltex protein 2; ring- 99.2 2.7E-11 9.3E-16 86.2 4.7 68 10-83 7-95 (114)
19 1chc_A Equine herpes virus-1 r 99.1 1.8E-11 6E-16 79.1 3.1 49 22-81 3-51 (68)
20 2ect_A Ring finger protein 126 99.1 3.4E-11 1.1E-15 79.9 4.5 54 22-86 13-68 (78)
21 1e4u_A Transcriptional repress 99.1 3.9E-11 1.3E-15 79.8 4.6 57 22-88 9-68 (78)
22 2csy_A Zinc finger protein 183 99.1 2.6E-11 8.9E-16 81.1 3.6 48 22-81 13-60 (81)
23 1jm7_A BRCA1, breast cancer ty 99.1 2E-11 6.9E-16 86.5 3.2 53 24-85 21-73 (112)
24 2egp_A Tripartite motif-contai 99.1 1.4E-11 4.9E-16 81.8 2.2 59 22-85 10-68 (79)
25 2ecn_A Ring finger protein 141 99.1 1.4E-11 4.7E-16 80.1 2.1 53 22-87 13-65 (70)
26 2ea6_A Ring finger protein 4; 99.1 2.3E-11 7.8E-16 78.6 2.5 50 22-82 13-68 (69)
27 2kiz_A E3 ubiquitin-protein li 99.1 5.7E-11 1.9E-15 76.9 4.1 51 22-83 12-64 (69)
28 2y43_A E3 ubiquitin-protein li 99.1 2.9E-11 9.9E-16 84.0 2.6 48 24-83 22-70 (99)
29 3fl2_A E3 ubiquitin-protein li 99.1 3.6E-11 1.2E-15 87.0 3.1 48 24-82 52-99 (124)
30 1iym_A EL5; ring-H2 finger, ub 99.1 7.7E-11 2.6E-15 72.8 3.7 49 22-81 3-54 (55)
31 1x4j_A Ring finger protein 38; 99.1 6.1E-11 2.1E-15 78.1 3.1 51 22-83 21-73 (75)
32 2kre_A Ubiquitin conjugation f 99.0 1.3E-10 4.4E-15 80.9 4.4 52 23-86 28-79 (100)
33 2ckl_A Polycomb group ring fin 99.0 1.1E-10 3.7E-15 82.3 4.0 49 23-83 14-63 (108)
34 2ecl_A Ring-box protein 2; RNF 99.0 1.1E-10 3.8E-15 78.1 3.7 52 22-84 13-78 (81)
35 2l0b_A E3 ubiquitin-protein li 99.0 1.3E-10 4.6E-15 79.4 4.0 49 23-82 39-89 (91)
36 2ecj_A Tripartite motif-contai 99.0 9.5E-11 3.3E-15 73.0 2.9 46 22-76 13-58 (58)
37 2kr4_A Ubiquitin conjugation f 99.0 1E-10 3.5E-15 79.0 3.2 52 23-86 13-64 (85)
38 2ckl_B Ubiquitin ligase protei 99.0 9.7E-11 3.3E-15 88.8 3.2 47 25-82 55-102 (165)
39 3hct_A TNF receptor-associated 99.0 1.5E-10 5.2E-15 82.9 4.0 54 22-86 16-69 (118)
40 1z6u_A NP95-like ring finger p 99.0 1.1E-10 3.7E-15 87.3 2.9 50 23-83 77-126 (150)
41 1z5z_A Helicase of the SNF2/RA 99.0 8.5E-10 2.9E-14 90.1 8.4 69 119-195 93-162 (271)
42 1wgm_A Ubiquitin conjugation f 99.0 3E-10 1E-14 78.7 4.7 53 22-86 20-73 (98)
43 1rmd_A RAG1; V(D)J recombinati 99.0 1.8E-10 6.2E-15 82.2 3.1 51 24-85 23-73 (116)
44 3l11_A E3 ubiquitin-protein li 99.0 7E-11 2.4E-15 84.2 0.7 49 23-82 14-62 (115)
45 2ep4_A Ring finger protein 24; 99.0 4.8E-10 1.6E-14 73.4 4.3 50 22-82 13-64 (74)
46 4ap4_A E3 ubiquitin ligase RNF 99.0 4.8E-10 1.7E-14 81.4 4.5 56 22-88 5-66 (133)
47 1bor_A Transcription factor PM 99.0 1.5E-10 5E-15 72.0 1.5 47 22-83 4-50 (56)
48 1jm7_B BARD1, BRCA1-associated 98.9 2.6E-10 8.9E-15 81.6 2.3 47 23-83 21-68 (117)
49 2yu4_A E3 SUMO-protein ligase 98.9 1.2E-09 4.3E-14 75.0 5.0 59 22-86 5-67 (94)
50 2vje_A E3 ubiquitin-protein li 98.9 3E-10 1E-14 72.6 1.3 51 19-81 3-56 (64)
51 3dpl_R Ring-box protein 1; ubi 98.9 8E-10 2.8E-14 77.6 3.6 49 22-81 35-100 (106)
52 2y1n_A E3 ubiquitin-protein li 98.9 8.8E-10 3E-14 93.6 4.3 52 24-86 332-383 (389)
53 2ecg_A Baculoviral IAP repeat- 98.9 6.2E-10 2.1E-14 73.3 2.6 53 13-83 16-69 (75)
54 2c2l_A CHIP, carboxy terminus 98.9 1E-09 3.5E-14 89.4 4.2 53 23-86 207-259 (281)
55 3knv_A TNF receptor-associated 98.9 3.5E-10 1.2E-14 83.6 1.0 51 22-83 29-79 (141)
56 2f42_A STIP1 homology and U-bo 98.8 1.8E-09 6.1E-14 82.6 4.2 53 23-86 105-157 (179)
57 3mwy_W Chromo domain-containin 98.8 4.1E-09 1.4E-13 98.0 7.2 71 120-198 554-624 (800)
58 4ic3_A E3 ubiquitin-protein li 98.8 8.3E-10 2.9E-14 72.5 1.4 44 23-82 23-67 (74)
59 3hcs_A TNF receptor-associated 98.8 2.2E-09 7.6E-14 81.6 4.0 54 22-86 16-69 (170)
60 2ea5_A Cell growth regulator w 98.8 3.4E-09 1.2E-13 68.4 3.8 46 21-82 12-58 (68)
61 2vje_B MDM4 protein; proto-onc 98.8 1E-09 3.4E-14 69.9 1.1 47 23-81 6-55 (63)
62 1wim_A KIAA0161 protein; ring 98.8 1.9E-09 6.4E-14 74.1 2.4 55 22-79 3-61 (94)
63 4ap4_A E3 ubiquitin ligase RNF 98.8 3E-09 1E-13 77.1 3.2 56 20-86 68-129 (133)
64 2yho_A E3 ubiquitin-protein li 98.7 1.8E-09 6.2E-14 71.8 1.2 53 13-83 9-62 (79)
65 1z3i_X Similar to RAD54-like; 98.7 2.5E-08 8.5E-13 90.6 8.5 70 119-195 396-465 (644)
66 3htk_C E3 SUMO-protein ligase 98.7 3.2E-09 1.1E-13 85.2 2.2 55 23-86 180-236 (267)
67 4a0k_B E3 ubiquitin-protein li 98.7 1.8E-09 6E-14 77.1 0.5 52 21-83 45-113 (117)
68 2d8s_A Cellular modulator of i 98.6 3E-08 1E-12 66.0 4.9 53 22-83 13-71 (80)
69 2bay_A PRE-mRNA splicing facto 98.5 9.3E-08 3.2E-12 60.2 3.9 54 24-89 3-57 (61)
70 1z63_A Helicase of the SNF2/RA 98.5 3.8E-07 1.3E-11 79.9 8.7 69 119-195 322-391 (500)
71 1wp9_A ATP-dependent RNA helic 98.4 7E-07 2.4E-11 76.6 8.8 73 119-197 340-420 (494)
72 3t6p_A Baculoviral IAP repeat- 98.4 7.8E-08 2.7E-12 80.9 2.6 54 11-82 284-338 (345)
73 3hgt_A HDA1 complex subunit 3; 98.4 2.7E-07 9.1E-12 76.8 4.9 55 119-175 106-160 (328)
74 2ct0_A Non-SMC element 1 homol 98.3 3.6E-07 1.2E-11 59.6 3.7 51 23-82 14-64 (74)
75 3vk6_A E3 ubiquitin-protein li 98.3 3.8E-07 1.3E-11 62.2 2.5 47 26-82 3-49 (101)
76 1t5i_A C_terminal domain of A 98.2 7.6E-06 2.6E-10 61.8 9.2 68 120-197 15-82 (172)
77 2jgn_A DBX, DDX3, ATP-dependen 98.2 4.9E-06 1.7E-10 63.7 7.7 68 120-196 29-96 (185)
78 2hjv_A ATP-dependent RNA helic 98.2 9.9E-06 3.4E-10 60.5 9.1 68 119-196 18-85 (163)
79 1vyx_A ORF K3, K3RING; zinc-bi 98.2 1.9E-06 6.6E-11 53.9 4.2 53 20-82 2-59 (60)
80 1fuk_A Eukaryotic initiation f 98.1 2E-05 6.9E-10 58.8 9.2 65 122-196 16-80 (165)
81 2p6n_A ATP-dependent RNA helic 98.1 1.3E-05 4.5E-10 61.7 8.1 66 120-196 39-104 (191)
82 2rb4_A ATP-dependent RNA helic 98.0 2.9E-05 9.9E-10 58.6 8.7 65 122-196 20-84 (175)
83 3k1l_B Fancl; UBC, ring, RWD, 97.9 5.5E-06 1.9E-10 68.9 4.0 60 23-82 307-373 (381)
84 4a2p_A RIG-I, retinoic acid in 97.9 9.5E-06 3.3E-10 71.4 5.6 69 120-194 370-450 (556)
85 3tbk_A RIG-I helicase domain; 97.9 1.3E-05 4.4E-10 70.3 6.2 69 120-194 369-449 (555)
86 4a2w_A RIG-I, retinoic acid in 97.8 2.2E-05 7.6E-10 74.1 5.7 69 120-194 611-691 (936)
87 4a2q_A RIG-I, retinoic acid in 97.8 2.5E-05 8.5E-10 72.4 5.8 69 120-194 611-691 (797)
88 3eaq_A Heat resistant RNA depe 97.8 0.00011 3.8E-09 57.2 8.6 68 119-196 14-81 (212)
89 3dmq_A RNA polymerase-associat 97.7 5.8E-05 2E-09 71.5 7.4 68 119-196 486-554 (968)
90 4gl2_A Interferon-induced heli 97.6 5.2E-05 1.8E-09 68.9 4.9 73 120-198 379-466 (699)
91 2yjt_D ATP-dependent RNA helic 96.7 1.1E-05 3.8E-10 60.6 0.0 67 121-197 15-81 (170)
92 2ykg_A Probable ATP-dependent 97.4 0.00023 7.9E-09 64.6 7.2 73 120-198 378-463 (696)
93 3i32_A Heat resistant RNA depe 97.4 0.00074 2.5E-08 55.6 9.1 68 119-196 11-78 (300)
94 1xti_A Probable ATP-dependent 97.2 0.0014 4.8E-08 54.8 9.1 68 120-197 234-301 (391)
95 1hv8_A Putative ATP-dependent 97.1 0.0019 6.7E-08 53.2 8.5 68 119-197 222-289 (367)
96 2j0s_A ATP-dependent RNA helic 97.0 0.0022 7.5E-08 54.1 8.6 67 121-197 261-327 (410)
97 2i4i_A ATP-dependent RNA helic 97.0 0.0037 1.3E-07 52.7 9.4 69 120-197 259-327 (417)
98 3pey_A ATP-dependent RNA helic 96.9 0.0042 1.4E-07 51.7 9.0 60 132-197 235-294 (395)
99 2db3_A ATP-dependent RNA helic 96.9 0.0034 1.2E-07 53.9 8.6 66 120-196 285-350 (434)
100 3nw0_A Non-structural maintena 96.8 0.0011 3.8E-08 52.7 4.5 53 22-83 178-230 (238)
101 1s2m_A Putative ATP-dependent 96.8 0.004 1.4E-07 52.2 8.0 68 120-197 242-309 (400)
102 1oyw_A RECQ helicase, ATP-depe 96.7 0.008 2.7E-07 53.0 9.5 67 121-197 221-287 (523)
103 3fht_A ATP-dependent RNA helic 96.6 0.0058 2E-07 51.2 8.0 67 121-197 251-317 (412)
104 3eiq_A Eukaryotic initiation f 96.6 0.0036 1.2E-07 52.6 6.4 67 121-197 265-331 (414)
105 2oca_A DAR protein, ATP-depend 96.4 0.014 4.9E-07 50.7 9.0 69 122-198 331-399 (510)
106 2v1x_A ATP-dependent DNA helic 96.4 0.018 6.1E-07 51.6 9.7 55 137-197 264-318 (591)
107 3sqw_A ATP-dependent RNA helic 96.3 0.013 4.5E-07 52.1 8.3 70 121-196 268-341 (579)
108 3i5x_A ATP-dependent RNA helic 96.2 0.015 5.1E-07 51.3 8.3 70 121-196 319-392 (563)
109 1c4o_A DNA nucleotide excision 96.1 0.03 1E-06 50.8 9.9 69 120-196 421-489 (664)
110 2fwr_A DNA repair protein RAD2 96.1 0.0049 1.7E-07 53.2 4.4 66 119-199 332-397 (472)
111 2d7d_A Uvrabc system protein B 96.0 0.034 1.2E-06 50.5 9.9 69 121-197 428-496 (661)
112 2jun_A Midline-1; B-BOX, TRIM, 95.8 0.0045 1.5E-07 42.2 2.3 33 23-55 2-36 (101)
113 3h1t_A Type I site-specific re 95.3 0.033 1.1E-06 49.5 6.7 67 123-196 421-496 (590)
114 1fuu_A Yeast initiation factor 95.1 0.0037 1.3E-07 52.1 0.0 65 123-197 246-310 (394)
115 3fho_A ATP-dependent RNA helic 93.7 0.028 9.4E-07 49.2 2.4 68 121-198 342-409 (508)
116 1weo_A Cellulose synthase, cat 93.0 0.15 5.3E-06 33.6 4.5 55 19-83 11-71 (93)
117 3jux_A Protein translocase sub 93.0 0.34 1.2E-05 44.6 8.3 64 121-194 457-520 (822)
118 2cs3_A Protein C14ORF4, MY039 92.8 0.11 3.8E-06 33.6 3.6 48 21-75 12-63 (93)
119 2z0m_A 337AA long hypothetical 92.6 0.2 6.9E-06 40.3 5.9 50 137-196 217-266 (337)
120 3fmp_B ATP-dependent RNA helic 92.1 0.027 9.4E-07 48.6 0.0 68 121-198 318-385 (479)
121 2fsf_A Preprotein translocase 92.0 0.28 9.6E-06 45.6 6.6 66 121-194 424-489 (853)
122 1tf5_A Preprotein translocase 91.9 0.21 7.2E-06 46.4 5.6 54 120-175 414-467 (844)
123 1nkt_A Preprotein translocase 91.4 0.36 1.2E-05 45.2 6.6 53 121-175 443-495 (922)
124 2ko5_A Ring finger protein Z; 90.3 0.25 8.4E-06 33.0 3.2 48 23-83 27-74 (99)
125 2eyq_A TRCF, transcription-rep 89.5 0.53 1.8E-05 45.5 6.2 54 139-198 811-866 (1151)
126 2xau_A PRE-mRNA-splicing facto 88.9 0.57 2E-05 43.2 5.8 67 121-193 284-361 (773)
127 2l82_A Designed protein OR32; 88.8 1.8 6.1E-05 29.8 6.8 50 143-198 5-54 (162)
128 3oiy_A Reverse gyrase helicase 87.6 0.91 3.1E-05 38.0 5.8 60 121-197 238-298 (414)
129 4a4z_A Antiviral helicase SKI2 82.7 2.9 9.9E-05 39.7 7.3 66 122-197 322-426 (997)
130 2jne_A Hypothetical protein YF 82.5 0.088 3E-06 35.4 -2.2 40 25-81 33-72 (101)
131 3ipz_A Monothiol glutaredoxin- 82.2 3.2 0.00011 28.0 5.6 34 140-173 17-56 (109)
132 2xqn_T Testin, TESS; metal-bin 81.7 1.4 4.8E-05 30.6 3.7 47 25-84 31-77 (126)
133 3i2d_A E3 SUMO-protein ligase 80.8 1.5 5.1E-05 36.8 4.0 54 26-86 251-304 (371)
134 1z60_A TFIIH basal transcripti 80.4 1.2 4.1E-05 27.1 2.5 41 25-76 16-58 (59)
135 2lqo_A Putative glutaredoxin R 80.2 2.5 8.5E-05 27.9 4.3 46 140-191 3-49 (92)
136 3zyw_A Glutaredoxin-3; metal b 79.3 4.7 0.00016 27.4 5.7 34 140-173 15-54 (111)
137 4fo9_A E3 SUMO-protein ligase 78.6 1.9 6.6E-05 36.0 4.0 54 26-86 217-270 (360)
138 2xgj_A ATP-dependent RNA helic 78.0 5.6 0.00019 37.8 7.5 65 122-196 329-432 (1010)
139 2cup_A Skeletal muscle LIM-pro 76.4 3.1 0.00011 27.5 4.0 47 25-84 34-80 (101)
140 2d8v_A Zinc finger FYVE domain 75.9 1.4 4.9E-05 27.3 1.9 33 21-55 5-38 (67)
141 2whx_A Serine protease/ntpase/ 75.5 4.2 0.00014 36.4 5.7 48 140-197 355-402 (618)
142 2yan_A Glutaredoxin-3; oxidore 74.5 8.5 0.00029 25.4 5.9 45 127-174 6-56 (105)
143 3gx8_A Monothiol glutaredoxin- 74.3 14 0.00046 25.4 7.0 34 140-173 15-57 (121)
144 2va8_A SSO2462, SKI2-type heli 73.4 17 0.0006 32.6 9.3 52 139-196 251-338 (715)
145 3l9o_A ATP-dependent RNA helic 73.0 5 0.00017 38.6 5.8 54 138-197 439-531 (1108)
146 3rc3_A ATP-dependent RNA helic 72.8 8.2 0.00028 35.0 6.9 46 143-194 323-368 (677)
147 1z2q_A LM5-1; membrane protein 71.7 2.6 8.8E-05 27.4 2.5 35 20-54 17-54 (84)
148 2jlq_A Serine protease subunit 71.6 5.2 0.00018 34.1 5.1 48 140-197 188-235 (451)
149 2yw8_A RUN and FYVE domain-con 71.4 2.4 8.2E-05 27.4 2.3 35 20-54 15-52 (82)
150 1joc_A EEA1, early endosomal a 71.1 1.9 6.6E-05 30.3 1.9 32 23-54 68-102 (125)
151 1yks_A Genome polyprotein [con 70.8 4.6 0.00016 34.4 4.6 48 140-197 177-224 (440)
152 1x4u_A Zinc finger, FYVE domai 70.7 2.6 9E-05 27.3 2.4 36 19-54 9-47 (84)
153 2v6i_A RNA helicase; membrane, 70.5 6.8 0.00023 33.2 5.6 49 140-198 171-219 (431)
154 2wem_A Glutaredoxin-related pr 69.5 14 0.00049 25.3 6.2 35 140-174 19-60 (118)
155 1m3v_A FLIN4, fusion of the LI 69.3 2.2 7.6E-05 29.5 1.9 50 25-85 33-84 (122)
156 2p6r_A Afuhel308 helicase; pro 69.2 9.8 0.00034 34.3 6.7 50 139-196 241-322 (702)
157 2wv9_A Flavivirin protease NS2 68.8 5.8 0.0002 35.9 5.0 50 139-198 409-458 (673)
158 2xjy_A Rhombotin-2; oncoprotei 68.5 5.6 0.00019 27.6 3.9 49 25-84 30-80 (131)
159 1wik_A Thioredoxin-like protei 68.2 11 0.00036 25.2 5.2 36 140-175 14-55 (109)
160 3t7l_A Zinc finger FYVE domain 67.8 2.6 9E-05 27.8 1.9 34 22-55 18-54 (90)
161 2rgt_A Fusion of LIM/homeobox 67.6 5.4 0.00019 29.2 3.9 48 25-86 34-81 (169)
162 2jrp_A Putative cytoplasmic pr 67.2 0.41 1.4E-05 31.1 -2.1 40 25-81 3-42 (81)
163 2wci_A Glutaredoxin-4; redox-a 66.6 19 0.00064 25.3 6.4 34 141-174 35-74 (135)
164 3m62_A Ubiquitin conjugation f 66.0 4.8 0.00017 37.9 3.9 53 22-86 889-942 (968)
165 1wfk_A Zinc finger, FYVE domai 66.0 3.7 0.00013 26.9 2.4 33 22-54 7-42 (88)
166 2z83_A Helicase/nucleoside tri 65.3 3.1 0.00011 35.6 2.4 48 140-197 190-237 (459)
167 1gm5_A RECG; helicase, replica 65.1 3.3 0.00011 38.3 2.6 71 120-198 560-641 (780)
168 2fiy_A Protein FDHE homolog; F 64.8 0.66 2.3E-05 38.0 -1.9 52 22-88 180-237 (309)
169 1iml_A CRIP, cysteine rich int 63.8 7.3 0.00025 24.1 3.4 43 25-80 28-71 (76)
170 1x61_A Thyroid receptor intera 60.9 7.8 0.00027 23.6 3.1 33 25-57 34-66 (72)
171 1rut_X Flinc4, fusion protein 60.1 4.9 0.00017 30.0 2.4 49 25-84 33-83 (188)
172 2zj8_A DNA helicase, putative 58.7 16 0.00055 33.0 6.0 52 139-196 236-320 (720)
173 1t1v_A SH3BGRL3, SH3 domain-bi 58.4 13 0.00046 23.8 4.1 45 142-192 3-54 (93)
174 1b8t_A Protein (CRP1); LIM dom 58.2 11 0.00037 28.1 4.1 32 25-56 35-66 (192)
175 1y02_A CARP2, FYVE-ring finger 57.3 4.5 0.00015 28.3 1.6 36 20-55 15-53 (120)
176 1wd2_A Ariadne-1 protein homol 56.8 1.4 4.8E-05 26.8 -1.0 33 23-55 5-44 (60)
177 1u6t_A SH3 domain-binding glut 56.8 13 0.00044 25.9 3.9 34 154-193 20-53 (121)
178 1vfy_A Phosphatidylinositol-3- 56.6 7 0.00024 24.5 2.3 29 25-53 12-43 (73)
179 2d8x_A Protein pinch; LIM doma 56.2 6.8 0.00023 23.8 2.2 32 25-56 32-63 (70)
180 3h8q_A Thioredoxin reductase 3 56.1 21 0.00073 23.8 5.0 34 140-173 16-50 (114)
181 3nzn_A Glutaredoxin; structura 56.1 29 0.00098 22.6 5.6 50 140-194 21-71 (103)
182 4ddu_A Reverse gyrase; topoiso 55.9 18 0.0006 34.8 5.9 60 122-198 296-356 (1104)
183 2jtn_A LIM domain-binding prot 55.8 8.3 0.00028 28.5 3.0 45 26-84 89-133 (182)
184 2kpo_A Rossmann 2X2 fold prote 55.7 38 0.0013 21.7 8.8 67 125-198 36-102 (110)
185 2lbm_A Transcriptional regulat 55.1 6.3 0.00021 28.4 2.1 56 21-77 60-115 (142)
186 1zbd_B Rabphilin-3A; G protein 54.0 5.2 0.00018 28.5 1.5 33 21-53 52-88 (134)
187 3qmx_A Glutaredoxin A, glutare 53.2 28 0.00097 22.7 5.1 36 140-175 15-51 (99)
188 1dvp_A HRS, hepatocyte growth 53.0 5.8 0.0002 30.5 1.8 31 24-54 161-194 (220)
189 2wul_A Glutaredoxin related pr 52.3 50 0.0017 22.6 6.4 48 140-194 19-73 (118)
190 2cur_A Skeletal muscle LIM-pro 52.2 13 0.00045 22.3 3.1 32 25-56 32-63 (69)
191 3zyq_A Hepatocyte growth facto 51.4 6.4 0.00022 30.5 1.8 31 24-54 164-197 (226)
192 3g5j_A Putative ATP/GTP bindin 51.3 19 0.00065 24.4 4.2 50 123-175 74-125 (134)
193 2khp_A Glutaredoxin; thioredox 51.2 40 0.0014 21.0 5.6 33 141-173 6-39 (92)
194 2dar_A PDZ and LIM domain prot 51.0 10 0.00035 24.4 2.5 30 26-55 53-82 (90)
195 3rhb_A ATGRXC5, glutaredoxin-C 50.5 33 0.0011 22.6 5.2 33 141-173 19-52 (113)
196 1h75_A Glutaredoxin-like prote 50.4 17 0.00059 22.1 3.5 32 142-173 2-34 (81)
197 2k16_A Transcription initiatio 50.4 2.8 9.4E-05 26.4 -0.4 51 24-81 18-70 (75)
198 3gk5_A Uncharacterized rhodane 50.2 27 0.00092 23.1 4.7 37 138-174 53-89 (108)
199 2zet_C Melanophilin; complex, 50.1 8.4 0.00029 28.0 2.1 30 23-52 67-100 (153)
200 4g9i_A Hydrogenase maturation 50.1 9.3 0.00032 35.2 2.9 58 21-81 103-189 (772)
201 3ql9_A Transcriptional regulat 49.8 9.2 0.00031 27.0 2.2 56 22-78 55-110 (129)
202 3o8b_A HCV NS3 protease/helica 49.1 24 0.00082 31.9 5.4 37 139-175 395-431 (666)
203 3ttc_A HYPF, transcriptional r 48.9 12 0.0004 33.9 3.3 57 21-80 14-99 (657)
204 3mpx_A FYVE, rhogef and PH dom 48.4 3.7 0.00013 34.7 0.0 55 22-80 373-430 (434)
205 2cu8_A Cysteine-rich protein 2 47.9 13 0.00044 23.0 2.6 43 23-84 8-50 (76)
206 1r7h_A NRDH-redoxin; thioredox 47.2 21 0.00073 21.1 3.5 32 142-173 2-34 (75)
207 2jtq_A Phage shock protein E; 46.8 44 0.0015 20.7 5.2 38 138-175 39-76 (85)
208 2d8z_A Four and A half LIM dom 46.6 16 0.00053 22.0 2.8 31 25-55 32-62 (70)
209 3foj_A Uncharacterized protein 46.0 18 0.00062 23.4 3.2 37 138-174 54-90 (100)
210 1nyp_A Pinch protein; LIM doma 45.9 12 0.0004 22.4 2.0 31 25-55 32-62 (66)
211 1x4l_A Skeletal muscle LIM-pro 44.9 12 0.00042 22.7 2.1 31 25-55 36-66 (72)
212 2lv9_A Histone-lysine N-methyl 44.9 6 0.0002 26.4 0.6 45 25-78 29-75 (98)
213 2co8_A NEDD9 interacting prote 44.8 23 0.00078 22.3 3.4 44 22-84 13-56 (82)
214 2l3k_A Rhombotin-2, linker, LI 44.6 33 0.0011 23.4 4.5 34 25-58 37-71 (123)
215 1f62_A Transcription factor WS 43.6 5.9 0.0002 22.8 0.4 46 26-78 2-49 (51)
216 2ct6_A SH3 domain-binding glut 43.4 32 0.0011 22.9 4.2 46 141-192 8-60 (111)
217 2jmo_A Parkin; IBR, E3 ligase, 43.3 3 0.0001 26.8 -1.1 32 24-55 25-68 (80)
218 3iwh_A Rhodanese-like domain p 43.2 15 0.00053 24.3 2.5 37 138-174 54-90 (103)
219 1fov_A Glutaredoxin 3, GRX3; a 42.6 44 0.0015 20.1 4.6 32 142-173 2-34 (82)
220 3vth_A Hydrogenase maturation 42.4 12 0.00041 34.5 2.3 57 22-81 109-194 (761)
221 2lri_C Autoimmune regulator; Z 42.0 8.3 0.00028 23.7 0.9 49 23-79 11-59 (66)
222 2pv0_B DNA (cytosine-5)-methyl 41.6 13 0.00044 31.3 2.2 55 22-78 91-147 (386)
223 2iyb_E Testin, TESS, TES; LIM 41.5 9.8 0.00034 22.8 1.2 29 25-53 33-62 (65)
224 2dj7_A Actin-binding LIM prote 41.0 14 0.00049 23.2 2.0 41 22-81 13-53 (80)
225 1wyh_A SLIM 2, skeletal muscle 41.0 16 0.00056 22.1 2.2 31 25-55 34-64 (72)
226 3msz_A Glutaredoxin 1; alpha-b 40.9 60 0.002 19.7 6.2 31 141-171 4-35 (89)
227 3eme_A Rhodanese-like domain p 40.2 18 0.00063 23.5 2.5 37 138-174 54-90 (103)
228 3a1b_A DNA (cytosine-5)-methyl 39.3 12 0.00043 27.3 1.6 53 23-78 78-133 (159)
229 2uzg_A Ubiquitin carboxyl-term 39.3 14 0.00049 24.5 1.8 27 24-50 25-53 (97)
230 2l5u_A Chromodomain-helicase-D 39.0 3.9 0.00013 24.7 -1.0 50 19-78 6-57 (61)
231 1wv9_A Rhodanese homolog TT165 39.0 26 0.0009 22.3 3.1 35 141-175 54-88 (94)
232 1b8t_A Protein (CRP1); LIM dom 39.0 25 0.00086 26.0 3.4 41 26-79 144-184 (192)
233 4f67_A UPF0176 protein LPG2838 38.9 53 0.0018 25.9 5.4 37 137-173 178-215 (265)
234 3hix_A ALR3790 protein; rhodan 38.9 34 0.0012 22.4 3.8 37 138-174 50-87 (106)
235 1x4k_A Skeletal muscle LIM-pro 38.8 18 0.00062 21.8 2.2 31 25-55 34-64 (72)
236 1ego_A Glutaredoxin; electron 38.6 32 0.0011 20.9 3.4 9 163-171 29-37 (85)
237 2egq_A FHL1 protein; LIM domai 38.6 12 0.00041 23.1 1.3 11 25-35 16-26 (77)
238 2l4z_A DNA endonuclease RBBP8, 38.3 17 0.0006 25.0 2.2 39 24-81 61-99 (123)
239 2cor_A Pinch protein; LIM doma 37.8 27 0.00091 21.7 2.9 41 23-83 14-54 (79)
240 2k0z_A Uncharacterized protein 37.7 41 0.0014 22.1 4.0 38 138-175 54-91 (110)
241 2lci_A Protein OR36; structura 37.5 88 0.003 20.7 7.3 60 125-194 36-95 (134)
242 3ic4_A Glutaredoxin (GRX-1); s 37.5 39 0.0013 21.1 3.7 33 141-173 12-45 (92)
243 3c1r_A Glutaredoxin-1; oxidize 37.3 61 0.0021 21.7 4.9 33 141-173 25-62 (118)
244 1wig_A KIAA1808 protein; LIM d 37.2 13 0.00045 22.8 1.3 30 26-55 33-63 (73)
245 2o35_A Hypothetical protein DU 36.8 14 0.00048 24.8 1.4 14 47-60 43-56 (105)
246 1x62_A C-terminal LIM domain p 36.7 12 0.00042 23.3 1.1 13 24-36 15-27 (79)
247 3fyb_A Protein of unknown func 36.6 13 0.00045 24.9 1.2 13 47-59 42-54 (104)
248 1x64_A Alpha-actinin-2 associa 36.1 18 0.00062 23.1 1.9 12 25-36 26-37 (89)
249 3c5k_A HD6, histone deacetylas 35.7 11 0.00038 25.7 0.8 25 24-49 24-48 (109)
250 3mjh_B Early endosome antigen 35.7 10 0.00035 20.2 0.5 14 23-36 4-17 (34)
251 3o36_A Transcription intermedi 35.3 5.4 0.00018 29.7 -0.9 51 22-80 2-52 (184)
252 1x3h_A Leupaxin; paxillin fami 35.1 32 0.0011 21.2 3.0 31 25-55 42-72 (80)
253 2hze_A Glutaredoxin-1; thiored 34.9 60 0.002 21.4 4.6 34 140-173 18-55 (114)
254 2csz_A Synaptotagmin-like prot 34.9 24 0.00081 22.4 2.2 33 21-53 22-58 (76)
255 2cuq_A Four and A half LIM dom 34.9 32 0.0011 21.2 2.9 31 25-55 42-72 (80)
256 1zfo_A LAsp-1; LIM domain, zin 34.8 14 0.00048 18.8 1.0 28 25-52 4-31 (31)
257 1x63_A Skeletal muscle LIM-pro 34.7 22 0.00076 22.1 2.1 31 25-55 44-74 (82)
258 2d8y_A Eplin protein; LIM doma 33.5 30 0.001 22.1 2.7 29 27-55 45-73 (91)
259 3u5n_A E3 ubiquitin-protein li 33.0 4.9 0.00017 30.6 -1.6 51 22-80 5-55 (207)
260 3f6q_B LIM and senescent cell 33.0 18 0.00063 21.6 1.5 13 23-35 10-22 (72)
261 1gku_B Reverse gyrase, TOP-RG; 32.8 23 0.0008 33.7 2.8 60 121-197 261-320 (1054)
262 1aba_A Glutaredoxin; electron 32.7 88 0.003 19.3 6.0 32 142-173 1-37 (87)
263 1kte_A Thioltransferase; redox 32.3 86 0.003 19.9 5.0 34 140-173 11-48 (105)
264 2gmg_A Hypothetical protein PF 31.8 8.2 0.00028 26.2 -0.4 27 37-79 67-93 (105)
265 2fgx_A Putative thioredoxin; N 31.8 46 0.0016 22.3 3.5 33 141-173 30-67 (107)
266 1gmx_A GLPE protein; transfera 31.6 45 0.0015 21.7 3.4 38 138-175 56-94 (108)
267 1v6g_A Actin binding LIM prote 31.5 28 0.00095 21.6 2.2 41 25-85 16-56 (81)
268 1wep_A PHF8; structural genomi 30.3 68 0.0023 20.0 3.9 52 23-81 11-65 (79)
269 3nhv_A BH2092 protein; alpha-b 29.9 39 0.0013 23.6 3.0 38 138-175 70-109 (144)
270 1l8d_A DNA double-strand break 29.7 14 0.00047 24.9 0.5 13 70-82 47-59 (112)
271 4gut_A Lysine-specific histone 29.3 23 0.0008 32.5 2.1 35 24-58 13-56 (776)
272 1wfh_A Zinc finger (AN1-like) 29.2 39 0.0014 20.6 2.4 28 23-50 14-41 (64)
273 2klx_A Glutaredoxin; thioredox 29.2 24 0.00082 22.1 1.6 29 142-170 7-36 (89)
274 1f6k_A N-acetylneuraminate lya 28.9 65 0.0022 25.6 4.5 29 163-191 37-65 (293)
275 1g47_A Pinch protein; LIM doma 28.9 22 0.00076 21.7 1.4 12 24-35 11-22 (77)
276 4ayb_P DNA-directed RNA polyme 28.9 7 0.00024 22.4 -1.0 12 69-80 22-33 (48)
277 2l69_A Rossmann 2X3 fold prote 28.8 1.3E+02 0.0043 19.9 6.0 44 142-194 4-47 (134)
278 4b3f_X DNA-binding protein smu 28.8 1.5E+02 0.0053 26.1 7.3 53 117-171 211-264 (646)
279 1j2o_A FLIN2, fusion of rhombo 28.5 36 0.0012 22.8 2.5 32 25-56 31-64 (114)
280 1mm2_A MI2-beta; PHD, zinc fin 28.5 8.8 0.0003 23.1 -0.6 51 21-79 6-56 (61)
281 3lqh_A Histone-lysine N-methyl 28.5 27 0.00092 26.1 1.9 56 25-80 3-64 (183)
282 2ri7_A Nucleosome-remodeling f 28.4 14 0.00047 27.1 0.3 53 20-79 4-59 (174)
283 2cq9_A GLRX2 protein, glutared 28.2 57 0.0019 22.2 3.6 32 142-173 28-60 (130)
284 1a7i_A QCRP2 (LIM1); LIM domai 28.1 22 0.00075 22.1 1.2 31 25-55 35-65 (81)
285 2vpb_A Hpygo1, pygopus homolog 27.9 27 0.00093 21.3 1.6 55 22-77 6-64 (65)
286 2fsx_A RV0390, COG0607: rhodan 27.7 46 0.0016 23.2 3.1 38 138-175 78-116 (148)
287 1wfp_A Zinc finger (AN1-like) 27.5 46 0.0016 20.9 2.6 29 22-50 23-51 (74)
288 2iqj_A Stromal membrane-associ 27.3 35 0.0012 24.1 2.3 43 12-55 14-57 (134)
289 3flh_A Uncharacterized protein 27.3 42 0.0014 22.7 2.7 37 138-174 69-107 (124)
290 2r91_A 2-keto-3-deoxy-(6-phosp 27.1 1E+02 0.0035 24.3 5.3 34 161-194 29-62 (286)
291 2yxg_A DHDPS, dihydrodipicolin 27.1 1E+02 0.0035 24.3 5.3 32 162-193 32-63 (289)
292 3ilm_A ALR3790 protein; rhodan 26.9 65 0.0022 22.4 3.7 37 138-174 54-91 (141)
293 3jy6_A Transcriptional regulat 26.9 1.4E+02 0.0048 22.5 6.1 25 149-173 22-46 (276)
294 1wg2_A Zinc finger (AN1-like) 26.7 49 0.0017 20.2 2.5 28 23-50 14-41 (64)
295 1wfl_A Zinc finger protein 216 26.6 28 0.00096 22.0 1.5 27 24-50 25-51 (74)
296 2hfv_A Hypothetical protein RP 26.5 1E+02 0.0035 20.4 4.3 34 142-175 24-57 (97)
297 1x68_A FHL5 protein; four-and- 26.3 24 0.00083 21.6 1.2 10 26-35 7-16 (76)
298 3o74_A Fructose transport syst 26.2 1.6E+02 0.0054 21.9 6.2 24 149-172 17-40 (272)
299 1xqo_A 8-oxoguanine DNA glycos 25.8 13 0.00046 29.3 -0.2 36 123-160 121-156 (256)
300 1we9_A PHD finger family prote 25.8 35 0.0012 20.3 1.8 53 21-79 3-58 (64)
301 2hhg_A Hypothetical protein RP 25.8 37 0.0013 23.3 2.2 37 138-174 84-121 (139)
302 3dmn_A Putative DNA helicase; 25.7 1.6E+02 0.0054 21.0 5.8 48 124-173 47-94 (174)
303 3tb6_A Arabinose metabolism tr 25.6 1.6E+02 0.0055 22.2 6.3 11 162-172 69-79 (298)
304 3d1p_A Putative thiosulfate su 25.6 50 0.0017 22.6 2.9 37 138-174 89-126 (139)
305 1tq1_A AT5G66040, senescence-a 25.4 37 0.0013 23.1 2.1 38 138-175 80-118 (129)
306 1xg7_A Hypothetical protein; s 25.2 14 0.00049 29.0 -0.1 36 123-163 133-168 (250)
307 2j48_A Two-component sensor ki 25.2 1.1E+02 0.0038 18.9 4.5 45 140-194 25-69 (119)
308 2b0o_E UPLC1; arfgap, structur 25.2 36 0.0012 27.0 2.2 44 11-55 28-72 (301)
309 1vlj_A NADH-dependent butanol 24.9 2.5E+02 0.0086 23.2 7.6 55 141-198 44-103 (407)
310 1wff_A Riken cDNA 2810002D23 p 24.9 55 0.0019 21.2 2.7 30 22-51 23-53 (85)
311 2wkj_A N-acetylneuraminate lya 24.8 1.2E+02 0.004 24.2 5.3 28 164-191 45-72 (303)
312 2g45_A Ubiquitin carboxyl-term 24.7 30 0.001 24.3 1.5 27 23-50 33-59 (129)
313 3l6u_A ABC-type sugar transpor 24.6 1.7E+02 0.0059 22.1 6.2 23 149-171 23-45 (293)
314 2i50_A Ubiquitin carboxyl-term 24.6 36 0.0012 23.7 1.9 32 19-50 23-67 (126)
315 3egc_A Putative ribose operon 24.2 1.8E+02 0.006 22.1 6.2 44 149-198 23-66 (291)
316 3e61_A Putative transcriptiona 24.1 1.7E+02 0.006 21.8 6.1 44 149-198 23-66 (277)
317 3uug_A Multiple sugar-binding 24.0 1.5E+02 0.0052 22.9 5.9 44 149-198 18-61 (330)
318 1wil_A KIAA1045 protein; ring 24.0 61 0.0021 21.0 2.7 31 23-55 14-47 (89)
319 1fp0_A KAP-1 corepressor; PHD 23.8 16 0.00055 23.9 -0.1 53 19-79 20-72 (88)
320 1ttz_A Conserved hypothetical 23.6 1E+02 0.0035 19.4 3.9 32 142-173 2-35 (87)
321 2ojp_A DHDPS, dihydrodipicolin 23.6 1.3E+02 0.0045 23.7 5.4 31 163-193 34-64 (292)
322 2fn9_A Ribose ABC transporter, 23.5 1.9E+02 0.0064 21.9 6.2 32 140-172 32-66 (290)
323 3tg1_B Dual specificity protei 23.4 46 0.0016 23.5 2.4 35 140-174 93-136 (158)
324 1x6a_A LIMK-2, LIM domain kina 23.3 74 0.0025 19.5 3.1 32 25-56 42-75 (81)
325 3lfu_A DNA helicase II; SF1 he 23.1 1.5E+02 0.0052 25.8 6.2 51 124-175 330-381 (647)
326 2ro1_A Transcription intermedi 22.9 13 0.00043 27.9 -0.8 48 24-79 2-49 (189)
327 3m9w_A D-xylose-binding peripl 22.9 1.9E+02 0.0064 22.2 6.2 24 149-172 17-40 (313)
328 2qh8_A Uncharacterized protein 22.8 1.9E+02 0.0066 22.2 6.3 45 149-199 22-72 (302)
329 3eod_A Protein HNR; response r 22.8 1.2E+02 0.0042 19.5 4.5 31 141-175 32-62 (130)
330 3l49_A ABC sugar (ribose) tran 22.8 1.8E+02 0.006 22.0 5.9 22 150-171 21-42 (291)
331 3n0r_A Response regulator; sig 22.5 2.2E+02 0.0074 22.2 6.4 56 137-204 157-213 (286)
332 1byk_A Protein (trehalose oper 22.5 1.6E+02 0.0056 21.7 5.6 23 149-171 17-39 (255)
333 3i42_A Response regulator rece 22.3 94 0.0032 20.0 3.7 45 140-194 27-71 (127)
334 3grc_A Sensor protein, kinase; 22.3 1.2E+02 0.0042 19.8 4.4 45 140-194 30-74 (140)
335 3brq_A HTH-type transcriptiona 22.3 1.9E+02 0.0066 21.7 6.1 19 153-172 67-85 (296)
336 2dlo_A Thyroid receptor-intera 22.0 76 0.0026 19.4 3.0 31 25-55 42-73 (81)
337 3d8u_A PURR transcriptional re 21.9 1.7E+02 0.0059 21.8 5.7 16 151-166 20-35 (275)
338 3pwf_A Rubrerythrin; non heme 21.9 63 0.0022 23.6 2.9 47 8-79 116-162 (170)
339 3a5f_A Dihydrodipicolinate syn 21.7 1.1E+02 0.0038 24.1 4.6 31 163-193 34-64 (291)
340 1dbq_A Purine repressor; trans 21.6 1.6E+02 0.0056 22.1 5.5 12 162-173 61-72 (289)
341 3ulw_A 30S ribosomal protein S 21.2 43 0.0015 22.1 1.6 25 180-204 6-30 (93)
342 3jsz_A LGT1, putative uncharac 21.2 2.3E+02 0.0078 23.8 6.2 44 130-173 155-202 (525)
343 2l2o_A UPF0727 protein C6ORF11 21.2 1.1E+02 0.0037 19.9 3.5 52 124-175 7-66 (89)
344 2lcq_A Putative toxin VAPC6; P 21.2 40 0.0014 24.3 1.7 10 71-80 149-158 (165)
345 3ctg_A Glutaredoxin-2; reduced 21.2 1.8E+02 0.006 19.7 5.0 33 141-173 37-74 (129)
346 2ct7_A Ring finger protein 31; 21.1 20 0.00067 23.1 -0.1 30 26-55 27-61 (86)
347 2iks_A DNA-binding transcripti 20.9 2.2E+02 0.0077 21.5 6.2 22 149-170 35-56 (293)
348 1uar_A Rhodanese; sulfurtransf 20.9 1.6E+02 0.0056 22.6 5.4 37 138-174 231-269 (285)
349 3lte_A Response regulator; str 20.8 1.2E+02 0.0043 19.5 4.1 45 140-194 30-74 (132)
350 1lv3_A Hypothetical protein YA 20.8 24 0.00081 21.9 0.3 13 69-81 8-20 (68)
351 1qxn_A SUD, sulfide dehydrogen 20.8 48 0.0017 22.9 2.0 37 138-174 80-117 (137)
352 3o3m_B Beta subunit 2-hydroxya 20.8 3.1E+02 0.011 22.5 7.3 66 122-194 300-370 (385)
353 4a5u_B 30S ribosomal protein S 20.7 47 0.0016 21.7 1.7 25 180-204 2-26 (88)
354 3cpr_A Dihydrodipicolinate syn 20.7 1.7E+02 0.0057 23.3 5.4 29 164-192 50-78 (304)
355 2fep_A Catabolite control prot 20.4 2.3E+02 0.008 21.4 6.2 11 162-172 70-80 (289)
356 1w3i_A EDA, 2-keto-3-deoxy glu 20.2 1.6E+02 0.0056 23.2 5.3 33 162-194 31-63 (293)
357 3i9v_7 NADH-quinone oxidoreduc 20.1 49 0.0017 22.7 1.7 25 145-169 9-33 (129)
358 1wjk_A C330018D20RIK protein; 20.1 82 0.0028 20.2 2.9 33 141-173 17-52 (100)
359 1ass_A Thermosome; chaperonin, 20.1 94 0.0032 22.3 3.5 41 128-172 62-102 (159)
360 2v9d_A YAGE; dihydrodipicolini 20.1 1.4E+02 0.0048 24.3 4.9 29 164-192 65-93 (343)
361 2nuw_A 2-keto-3-deoxygluconate 20.0 1.6E+02 0.0056 23.2 5.2 33 162-194 31-63 (288)
No 1
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2e-12 Score=83.17 Aligned_cols=53 Identities=23% Similarity=0.514 Sum_probs=44.3
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCe
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNI 85 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 85 (210)
.+...|+||.+.+.++ +.++|||.||..|+..|+. .....||.||.++...++
T Consensus 13 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP-KQTECGHRFCESCMAALLS----------SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSC-CCCSSSCCCCHHHHHHHHT----------TSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCe-eECCCCCHHHHHHHHHHHH----------hCcCCCCCCCcCCChhhc
Confidence 3567899999999874 7799999999999999962 345689999999887765
No 2
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.1e-12 Score=84.61 Aligned_cols=55 Identities=31% Similarity=0.753 Sum_probs=44.6
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCe
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNI 85 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 85 (210)
.+...|+||++.+.+ ++.++|||.||..|+..|++. ......||.||.++...++
T Consensus 18 ~~~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQK-PVTIDCGHNFCLKCITQIGET--------SCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCSS--------SCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCC-eEEcCCCChhhHHHHHHHHHc--------CCCCCCCCCCCCcCCcccC
Confidence 356789999999887 488899999999999999531 1356789999999877654
No 3
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.6e-12 Score=84.13 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=43.6
Q ss_pred CCccccccccccccCCCee-cCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 22 ADEETCPICQEKLGNQKMV-FQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~-~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
.+...|+||++.+.++ +. ++|||.||..|+..|+.. ...||+||.++...++.
T Consensus 13 ~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDA-TTITECLHTFCKSCIVRHFYY-----------SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSC-EECSSSCCEECHHHHHHHHHH-----------CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCc-CEECCCCCHHHHHHHHHHHHc-----------CCcCCCcCcccCccccc
Confidence 3457899999999875 55 599999999999999743 35899999998877654
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.23 E-value=6.8e-12 Score=83.29 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=44.4
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
.+...|+||.+.+.+ ++.++|||.||..|+..|+. .+...||.||.++...++.
T Consensus 6 ~~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~----------~~~~~CP~C~~~~~~~~l~ 59 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLD----------AGHKTCPKSQETLLHAGLT 59 (78)
T ss_dssp SSSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHT----------TTCCBCTTTCCBCSSCCCE
T ss_pred cccCCCCCccccccC-CEEcCCCCeecHHHHHHHHH----------HCcCCCCCCcCCCChhhCc
Confidence 356789999999987 48899999999999999973 2356899999988766543
No 5
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=7.1e-12 Score=80.33 Aligned_cols=55 Identities=31% Similarity=0.609 Sum_probs=43.9
Q ss_pred Cccccccccc-cccCCC---eecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeEE
Q 028376 23 DEETCPICQE-KLGNQK---MVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIAY 87 (210)
Q Consensus 23 ~~~~C~iC~~-~~~~~~---~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 87 (210)
+...|+||.+ .+.++. ++++|||.||..|+.+|+.+ ....||.||.++...++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----------~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----------GAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----------TSSSCTTTCCCCSSCCCEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----------CCCcCCCCCCcccccccee
Confidence 4578999999 666542 46899999999999999642 3468999999998887653
No 6
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.23 E-value=9e-12 Score=82.01 Aligned_cols=52 Identities=29% Similarity=0.632 Sum_probs=42.1
Q ss_pred CCccccccccccccCCCeecC-CCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 22 ADEETCPICQEKLGNQKMVFQ-CGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~-CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
.+...|+||++.+.+ ++.++ |||.||..|+..|+.. .....||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~---------~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLE---------SDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHHH---------SSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHHh---------cCCCcCCCCCCcCCCc
Confidence 345789999999987 48888 9999999999999864 2346899999975443
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=84.19 Aligned_cols=56 Identities=29% Similarity=0.690 Sum_probs=45.0
Q ss_pred CCccccccccccccC---CCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCe
Q 028376 22 ADEETCPICQEKLGN---QKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNI 85 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~---~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 85 (210)
.+...|+||++.+.. .+++++|||.||..|+..|+.. ......||.||.++...++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLAS--------SINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHH--------CSSCBCCTTTCCCBCCSST
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHc--------CCCCcCCCCCCCcccchhH
Confidence 355789999998875 1478899999999999999865 2345789999999877654
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.21 E-value=4.3e-12 Score=82.60 Aligned_cols=57 Identities=26% Similarity=0.664 Sum_probs=45.4
Q ss_pred cCCCCccccccccccccCC------CeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 19 LSKADEETCPICQEKLGNQ------KMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 19 l~~~~~~~C~iC~~~~~~~------~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
+...+...|+||++.+.++ .+.++|||.||..|+.+|+.. ...||.||.++...++.
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINHKRYH 67 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-----------CSBCTTTCCBCCCCSCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-----------CCCCCCCCCccChhhee
Confidence 3456778999999987652 178999999999999999754 24899999998877653
No 9
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.21 E-value=7.6e-12 Score=79.64 Aligned_cols=54 Identities=26% Similarity=0.641 Sum_probs=44.3
Q ss_pred CccccccccccccCC------CeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeEE
Q 028376 23 DEETCPICQEKLGNQ------KMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIAY 87 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~------~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 87 (210)
+...|+||++.+.++ .+.++|||.||..|+.+|++. ...||.||.++...++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-----------CSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-----------CCCCCCCCccCCccceee
Confidence 567899999987652 278899999999999999754 348999999998887653
No 10
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2e-11 Score=81.98 Aligned_cols=58 Identities=34% Similarity=0.725 Sum_probs=46.4
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCe
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNI 85 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 85 (210)
.+...|+||.+.+.+ ++.++|||.||..|+..|+..... ......||.||..+...++
T Consensus 17 ~~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ-PLSLDCGHSFCQACLTANHKKSML-----DKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCTTTCSCCSS-CBCCSSSCCBCTTHHHHHHHHHHH-----TTSCCCCTTTCCSSCSSSC
T ss_pred cCCCCCCCCCcccCC-ceeCCCCCHHHHHHHHHHHHHhhc-----CCCCCcCCCCCCccCHHhc
Confidence 356789999999887 478899999999999999866332 1346789999999887654
No 11
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=4.1e-11 Score=80.44 Aligned_cols=59 Identities=32% Similarity=0.599 Sum_probs=47.1
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
.+...|+||.+.+.+ +++++|||.||..|+..|+..... ......||.||..+...++.
T Consensus 17 ~~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 17 KEEVTCPICLELLKE-PVSADCNHSFCRACITLNYESNRN-----TDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp CTTTSCTTTCSCCSS-CEECTTSCCBCHHHHHHHHHHSBC-----TTSCBCCTTTCCCCCTTCCE
T ss_pred ccCCCCcCCChhhCc-ceeCCCCCHHHHHHHHHHHHhccC-----CCCCCCCCCCCCcCCHHhCC
Confidence 346789999999887 488999999999999999865220 13467899999998877654
No 12
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.18 E-value=2.4e-11 Score=83.21 Aligned_cols=49 Identities=31% Similarity=0.714 Sum_probs=41.0
Q ss_pred CCccccccccccccCCCeecC-CCCcchHhhHHHHHHHhhhccccCCCccccccCCcccc
Q 028376 22 ADEETCPICQEKLGNQKMVFQ-CGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRT 80 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~-CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 80 (210)
.+...|+||.+.+.+ ++.++ |||.||..|+..|+.. .....||.||.++
T Consensus 11 ~~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~---------~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLE---------SDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSS-CEECTTTCCEECHHHHHHHHHH---------CTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHh---------cCCCcCcCCCCcC
Confidence 345789999999987 48888 9999999999999754 2346899999986
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=5.3e-12 Score=82.38 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=42.8
Q ss_pred CCCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCC
Q 028376 21 KADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGN 84 (210)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 84 (210)
..+...|+||++.+.+ ++.++|||.||..|+..|+ .....||+||..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH-PVSLPCKHVFCYLCVKGAS-----------WLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSSCCBCSSSSSBCSS-EEEETTTEEEEHHHHHHCT-----------TCSSBCSSSCCBCCHHH
T ss_pred CCCCCCCccCCcccCC-CEEccCCCHHHHHHHHHHH-----------HCCCcCcCcCchhCHhh
Confidence 3456789999999887 4888999999999999995 23468999999887654
No 14
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.16 E-value=1.3e-11 Score=85.98 Aligned_cols=53 Identities=25% Similarity=0.624 Sum_probs=43.8
Q ss_pred CccccccccccccCCCee-cCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 23 DEETCPICQEKLGNQKMV-FQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~-~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
+...|+||++.+.++ +. ++|||.||..|+..|+... ...||.||.++...++.
T Consensus 21 ~~~~C~IC~~~~~~p-~~~~~CgH~FC~~Ci~~~~~~~----------~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA-RLCPHCSKLCCFSCIRRWLTEQ----------RAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HHTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHHHT----------CSBCTTTCCBCCGGGCE
T ss_pred CCCCCccCCccccCc-cccCCCCChhhHHHHHHHHHHC----------cCCCCCCCCcCCHHHhH
Confidence 456899999999875 66 9999999999999997541 25899999998766554
No 15
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.16 E-value=1.3e-11 Score=91.06 Aligned_cols=47 Identities=28% Similarity=0.655 Sum_probs=39.9
Q ss_pred ccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 24 EETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
...|+||.+.+.+ +++++|||.||..|+..|+ .....||.||.++..
T Consensus 53 ~~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE-AVTLNCAHSFCSYCINEWM-----------KRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS-EEEETTSCEEEHHHHHHHT-----------TTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCC-ceECCCCCCccHHHHHHHH-----------HcCCcCCCCCCcCCC
Confidence 4579999999987 5889999999999999995 345689999998754
No 16
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.15 E-value=3.1e-11 Score=74.50 Aligned_cols=50 Identities=28% Similarity=0.693 Sum_probs=40.6
Q ss_pred CCCccccccccccccC---CCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccccc
Q 028376 21 KADEETCPICQEKLGN---QKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81 (210)
Q Consensus 21 ~~~~~~C~iC~~~~~~---~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 81 (210)
..+...|+||++.+.+ ..++++|||.||..|+.+|+.. ...||+||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-----------GYRCPLCSGPSS 54 (55)
T ss_dssp CSCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-----------TCCCTTSCCSSC
T ss_pred CCCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-----------CCcCCCCCCcCC
Confidence 3466899999998754 2577899999999999999754 258999998764
No 17
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.5e-11 Score=76.51 Aligned_cols=46 Identities=35% Similarity=0.870 Sum_probs=38.3
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCC
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTC 76 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~C 76 (210)
.+...|+||++.+.+ +++++|||.||..|+..|++. ......||+|
T Consensus 18 ~~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK-PVTIDCGHNFCLKCITQIGET--------SCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS-CEECTTSSEECHHHHHHHHHH--------CSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC-eEEeCCCCcchHHHHHHHHHc--------CCCCCcCcCC
Confidence 356789999999987 488899999999999999864 2345689998
No 18
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.15 E-value=2.7e-11 Score=86.20 Aligned_cols=68 Identities=29% Similarity=0.491 Sum_probs=47.5
Q ss_pred CchHHHHHh----cCCCCccccccccccccCCC-----------------eecCCCCcchHhhHHHHHHHhhhccccCCC
Q 028376 10 NSTKHRIES----LSKADEETCPICQEKLGNQK-----------------MVFQCGHFTCCKCFFAMTEQRLIHDNKVKN 68 (210)
Q Consensus 10 ~~~~~~~~~----l~~~~~~~C~iC~~~~~~~~-----------------~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~ 68 (210)
...++++.. +....+..|+||++.+..+. .+++|||.||..|+..|+.... ..
T Consensus 7 ~~p~~~i~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~------~~ 80 (114)
T 1v87_A 7 GEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN------KD 80 (114)
T ss_dssp CCHHHHHHHHEEECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC------CS
T ss_pred CChHHHHHHHHHhccCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc------CC
Confidence 344455544 34455679999999885421 2789999999999999985411 13
Q ss_pred ccccccCCcccccCC
Q 028376 69 EWVMCPTCRQRTDIG 83 (210)
Q Consensus 69 ~~~~CP~Cr~~~~~~ 83 (210)
....||+||..+...
T Consensus 81 ~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 81 GSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCBCTTTCCBSSSC
T ss_pred CCCcCCCCCCccCCC
Confidence 456899999987543
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.14 E-value=1.8e-11 Score=79.07 Aligned_cols=49 Identities=33% Similarity=0.681 Sum_probs=41.2
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccccc
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 81 (210)
.+...|+||++.+.++.+.++|||.||..|+..|++. ...||.||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-----------NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-----------SCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-----------cCcCcCCChhhH
Confidence 3567899999998875588999999999999999743 258999999875
No 20
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.14 E-value=3.4e-11 Score=79.89 Aligned_cols=54 Identities=26% Similarity=0.553 Sum_probs=42.8
Q ss_pred CCccccccccccccCC--CeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 22 ADEETCPICQEKLGNQ--KMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~--~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
.+...|+||++.+..+ ...++|||.||..|+.+|++ ....||+||..+...++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-----------QHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-----------TTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-----------cCCcCcCcCCccCCcccC
Confidence 3567899999987643 25579999999999999963 235899999998877654
No 21
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.13 E-value=3.9e-11 Score=79.75 Aligned_cols=57 Identities=30% Similarity=0.677 Sum_probs=43.0
Q ss_pred CCccccccccccccC-CCeecC--CCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeEEc
Q 028376 22 ADEETCPICQEKLGN-QKMVFQ--CGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIAYA 88 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~-~~~~~~--CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~ 88 (210)
.+...|+||++++.. +..+++ |||.||..|+..+. ......||.||.++....+.+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~----------~~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR----------TDENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHT----------TSSCSBCTTTCCBCSSCSSCCC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHH----------hcCCCCCCCCCCccCCCchhhc
Confidence 456789999998853 234444 99999999999873 1345689999999988766443
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.6e-11 Score=81.09 Aligned_cols=48 Identities=27% Similarity=0.545 Sum_probs=40.7
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccccc
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 81 (210)
.+...|+||++.+.+ +++++|||.||..|+..|++. ...||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN-PVVTKCRHYFCESCALEHFRA-----------TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHH-----------CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHC-----------CCcCCCcCcccc
Confidence 345689999999987 488999999999999999743 348999999875
No 23
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2e-11 Score=86.51 Aligned_cols=53 Identities=26% Similarity=0.638 Sum_probs=43.2
Q ss_pred ccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCe
Q 028376 24 EETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNI 85 (210)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 85 (210)
...|+||.+.+.++ +.++|||.||..|+..|+.. ......||.||.++...++
T Consensus 21 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIKEP-VSTKCDHIFCKFCMLKLLNQ--------KKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHHS--------SSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhcCe-EECCCCCHHHHHHHHHHHHh--------CCCCCCCcCCCCcCCHhhc
Confidence 46899999998874 77999999999999999754 2334689999998876543
No 24
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.13 E-value=1.4e-11 Score=81.77 Aligned_cols=59 Identities=27% Similarity=0.641 Sum_probs=44.5
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCe
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNI 85 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 85 (210)
.+...|+||.+.+.+ ++.++|||.||..|+..|+...... ......||.||.++...++
T Consensus 10 ~~~~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~~~~~~~~~----~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 10 QEEVTCPICLELLTE-PLSLDCGHSLCRACITVSNKEAVTS----MGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCEETTTTEECSS-CCCCSSSCCCCHHHHSCCCCCCSSS----CCCCCCCSSSCCCCCSSGG
T ss_pred ccCCCCcCCCcccCC-eeECCCCCHHHHHHHHHHHHhcccC----CCCCCcCCCCCCcCCHhhC
Confidence 356789999999887 4778999999999999985321100 1336789999999876543
No 25
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.4e-11 Score=80.08 Aligned_cols=53 Identities=30% Similarity=0.669 Sum_probs=43.7
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeEE
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIAY 87 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 87 (210)
.+...|+||++.+.+ ++++|||.||..|+..|+ .....||.||.++...+..+
T Consensus 13 ~~~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD--LILPCAHSFCQKCIDKWS-----------DRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS--EEETTTEEECHHHHHHSS-----------CCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC--cccCCCCcccHHHHHHHH-----------HCcCcCCCcCCcccCCCccc
Confidence 456789999998876 889999999999999994 45678999999987665433
No 26
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.3e-11 Score=78.59 Aligned_cols=50 Identities=28% Similarity=0.751 Sum_probs=40.5
Q ss_pred CCccccccccccccCC------CeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 22 ADEETCPICQEKLGNQ------KMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~------~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
.+...|+||++.+.++ .++++|||.||..|+..|+.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-----------CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-----------CCCCCCCCCccCc
Confidence 4567899999987652 178999999999999999754 3489999998753
No 27
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.10 E-value=5.7e-11 Score=76.88 Aligned_cols=51 Identities=25% Similarity=0.451 Sum_probs=40.3
Q ss_pred CCccccccccccccC--CCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 22 ADEETCPICQEKLGN--QKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~--~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
.+...|+||++.+.. ..+.++|||.||..|+..|+.. ...||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-----------NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-----------CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-----------CCCCcCcCccccCc
Confidence 455789999988753 3467899999999999999754 23699999987653
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.09 E-value=2.9e-11 Score=83.97 Aligned_cols=48 Identities=29% Similarity=0.546 Sum_probs=39.8
Q ss_pred ccccccccccccCCCeec-CCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 24 EETCPICQEKLGNQKMVF-QCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
...|+||.+.+.++ +.+ +|||.||..|+..|+. ....||.||..+...
T Consensus 22 ~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNIA-MIIPQCSHNYCSLCIRKFLS-----------YKTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHT-----------TCCBCTTTCCBCCGG
T ss_pred CCCcccCChhhCCc-CEECCCCCHhhHHHHHHHHH-----------CCCCCCCCCCcCChh
Confidence 46899999999875 555 9999999999999963 346899999987654
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.09 E-value=3.6e-11 Score=86.97 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=40.7
Q ss_pred ccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 24 EETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
...|+||.+.+.+ ++.++|||.||..|+..|+. .....||.||.++..
T Consensus 52 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR-PITTVCQHNVCKDCLDRSFR----------AQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHH----------TTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC-cEEeeCCCcccHHHHHHHHh----------HCcCCCCCCCccCCC
Confidence 4679999999987 48899999999999999974 234589999998865
No 30
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.08 E-value=7.7e-11 Score=72.75 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=38.5
Q ss_pred CCccccccccccccCC--CeecC-CCCcchHhhHHHHHHHhhhccccCCCccccccCCccccc
Q 028376 22 ADEETCPICQEKLGNQ--KMVFQ-CGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~--~~~~~-CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 81 (210)
.+...|+||++.+... ...++ |||.||..|+.+|+ .....||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~-----------~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-----------GSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT-----------TTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHH-----------HcCCcCcCCCCEeE
Confidence 4567899999988652 35565 99999999999995 33568999998764
No 31
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=6.1e-11 Score=78.07 Aligned_cols=51 Identities=22% Similarity=0.503 Sum_probs=40.7
Q ss_pred CCccccccccccccCC--CeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 22 ADEETCPICQEKLGNQ--KMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~--~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
.+...|+||++.+..+ ...++|||.||..|+..|+.. ...||+||..+...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-----------~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-----------NRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-----------CSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-----------CCcCcCcCCcCCCC
Confidence 4567899999987653 266899999999999999754 24899999987653
No 32
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.05 E-value=1.3e-10 Score=80.93 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=43.7
Q ss_pred CccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
+...||||.+.+.+| ++++|||.||..|+..|+ .....||.|+.++...+++
T Consensus 28 ~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l-----------~~~~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP-VRLPSGTIMDRSIILRHL-----------LNSPTDPFNRQTLTESMLE 79 (100)
T ss_dssp TTTBCTTTCSBCSSE-EEETTTEEEEHHHHHHHT-----------TSCSBCSSSCCBCCTTSSE
T ss_pred HhhCCcCccCcccCC-eECCCCCEEchHHHHHHH-----------HcCCCCCCCCCCCChhhce
Confidence 457899999999984 889999999999999995 2346899999998776543
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.05 E-value=1.1e-10 Score=82.33 Aligned_cols=49 Identities=20% Similarity=0.481 Sum_probs=40.5
Q ss_pred CccccccccccccCCCeec-CCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 23 DEETCPICQEKLGNQKMVF-QCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
+...|+||.+.+.++ +.+ +|||.||..|+..|+. ....||.||..+...
T Consensus 14 ~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA-TTIIECLHSFCKTCIVRYLE-----------TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE-EEETTTCCEEEHHHHHHHHT-----------SCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc-CEeCCCCChhhHHHHHHHHH-----------hCCcCcCCCcccccc
Confidence 457899999999875 665 9999999999999963 236899999987654
No 34
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=78.10 Aligned_cols=52 Identities=21% Similarity=0.429 Sum_probs=39.5
Q ss_pred CCccccccccccccCC-------------C-eecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCC
Q 028376 22 ADEETCPICQEKLGNQ-------------K-MVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGN 84 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~-------------~-~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 84 (210)
.++..|+||++.+... . ++.+|||.||..|+.+|+ .....||+||.++...+
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV-----------KQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHT-----------TTCCBCTTTCCBCCEEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHH-----------HhCCCCCCcCCCcchhh
Confidence 4567899999888542 2 344699999999999996 33458999999876543
No 35
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.04 E-value=1.3e-10 Score=79.42 Aligned_cols=49 Identities=24% Similarity=0.493 Sum_probs=38.8
Q ss_pred CccccccccccccCC--CeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 23 DEETCPICQEKLGNQ--KMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~--~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
+...|+||++.+... ...++|||.||..|+..|+. ....||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-----------~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-----------KSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-----------TTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-----------cCCcCcCcCccCCC
Confidence 456799999887642 35689999999999999963 33589999998754
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=9.5e-11 Score=73.04 Aligned_cols=46 Identities=30% Similarity=0.714 Sum_probs=37.3
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCC
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTC 76 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~C 76 (210)
.+...|+||++.+.++ ++++|||.||..|+..|+.. ......||+|
T Consensus 13 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP-VIIECGHNFCKACITRWWED--------LERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC-CCCSSCCCCCHHHHHHHTTS--------SCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc-EeCCCCCccCHHHHHHHHHh--------cCCCCCCCCC
Confidence 3567899999999874 78999999999999999532 1356789988
No 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.03 E-value=1e-10 Score=79.03 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=43.6
Q ss_pred CccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
+...|+||.+.+.+ +++++|||.||..|+..|+.. ...||.|+.++...+++
T Consensus 13 ~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~-----------~~~cP~~~~~l~~~~l~ 64 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLN-----------SPTDPFNRQMLTESMLE 64 (85)
T ss_dssp TTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHH-----------CSBCTTTCCBCCGGGCE
T ss_pred hheECcccCchhcC-CeECCCCCEECHHHHHHHHhc-----------CCCCCCCcCCCChHhcc
Confidence 46789999999998 489999999999999999753 35899999988765543
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.03 E-value=9.7e-11 Score=88.79 Aligned_cols=47 Identities=34% Similarity=0.725 Sum_probs=39.1
Q ss_pred cccccccccccCCCeec-CCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 25 ETCPICQEKLGNQKMVF-QCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
..|+||.+.+.++ +.+ +|||.||..|+..|+.. ....||.||.++..
T Consensus 55 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~----------~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKNT-MTTKECLHRFCADCIITALRS----------GNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSSE-EEETTTCCEEEHHHHHHHHHT----------TCCBCTTTCCBCCS
T ss_pred CCCcccChHhhCc-CEeCCCCChhHHHHHHHHHHh----------CcCCCCCCCCcCCC
Confidence 4899999999885 555 99999999999999742 34689999998754
No 39
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.02 E-value=1.5e-10 Score=82.93 Aligned_cols=54 Identities=22% Similarity=0.442 Sum_probs=44.5
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
.+...|+||.+.+.++ +.++|||.||..|+..|+... ...||.||.++...++.
T Consensus 16 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~~~~~ 69 (118)
T 3hct_A 16 ESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDA----------GHKCPVDNEILLENQLF 69 (118)
T ss_dssp CGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHH----------CSBCTTTCCBCCGGGCE
T ss_pred CCCCCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhC----------CCCCCCCCCCcCHHhcc
Confidence 3457899999999874 889999999999999997542 23899999998876654
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.01 E-value=1.1e-10 Score=87.27 Aligned_cols=50 Identities=24% Similarity=0.520 Sum_probs=41.8
Q ss_pred CccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
+...|+||.+.+.+ ++.++|||.||..|+..|+.. ....||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~----------~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFKA----------QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHT----------TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC-CEEcCCCCchhHHHHHHHHHh----------CCCcCCCCCccCCCC
Confidence 34689999999987 488999999999999999742 345899999988765
No 41
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.01 E-value=8.5e-10 Score=90.10 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhC-CceEEEeeCCCCCCcchhhHhhhHHHHHHhhc
Q 028376 119 SYGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIAN-NITCIKMKGENHKLPSANLQHRNALQKELTRH 195 (210)
Q Consensus 119 ~~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~-gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~ 195 (210)
..+.|+.+|.+.|..+.. ++.|+||||||+.++++|+..|... |+++.+++|+|+ ..+|.++++.|+++
T Consensus 93 ~~s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~------~~~R~~~i~~F~~~ 162 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS------KKERDDIISKFQNN 162 (271)
T ss_dssp TTCHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSC------HHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHh--CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCC------HHHHHHHHHHhcCC
Confidence 458999999999998864 4789999999999999999999985 999999999987 99999999999983
No 42
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.00 E-value=3e-10 Score=78.74 Aligned_cols=53 Identities=15% Similarity=0.029 Sum_probs=44.4
Q ss_pred CCccccccccccccCCCeecCCC-CcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 22 ADEETCPICQEKLGNQKMVFQCG-HFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~Cg-H~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
.+.+.||||.+.+.+ +++++|| |.||..||..|+. ....||.||.++...+++
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~-----------~~~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLL-----------SDQTDPFNRSPLTMDQIR 73 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTT-----------TSCBCTTTCSBCCTTTSE
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHH-----------hCCCCCCCCCCCChhhce
Confidence 356789999999998 4999999 9999999999952 245899999998776654
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.98 E-value=1.8e-10 Score=82.19 Aligned_cols=51 Identities=24% Similarity=0.574 Sum_probs=42.5
Q ss_pred ccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCe
Q 028376 24 EETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNI 85 (210)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 85 (210)
...|+||.+.+.+ ++.++|||.||..|+..|+.. ....||.||.++...++
T Consensus 23 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~----------~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHILAD-PVETSCKHLFCRICILRCLKV----------MGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHH----------TCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHhH----------CcCcCCCCCCCCCHhhc
Confidence 4689999999987 488999999999999999754 13579999998876654
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.98 E-value=7e-11 Score=84.25 Aligned_cols=49 Identities=35% Similarity=0.750 Sum_probs=40.6
Q ss_pred CccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
+...|+||.+.+.+ ++.++|||.||..|+..|+. .....||.||..+..
T Consensus 14 ~~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE-PVTLPCNHTLCKPCFQSTVE----------KASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS-CEECTTSCEECHHHHCCCCC----------TTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc-eeEcCCCCHHhHHHHHHHHh----------HCcCCCCCCCcccCc
Confidence 45789999999987 58889999999999999852 335789999998754
No 45
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=4.8e-10 Score=73.45 Aligned_cols=50 Identities=24% Similarity=0.474 Sum_probs=39.4
Q ss_pred CCccccccccccccCC--CeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 22 ADEETCPICQEKLGNQ--KMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~--~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
.+...|+||++.+..+ ..+++|||.||..|+.+|+.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-----------~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-----------RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-----------CSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-----------CCcCCCcCccccc
Confidence 4467899999988653 244599999999999999754 2389999998754
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.96 E-value=4.8e-10 Score=81.38 Aligned_cols=56 Identities=25% Similarity=0.635 Sum_probs=45.5
Q ss_pred CCccccccccccccCC------CeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeEEc
Q 028376 22 ADEETCPICQEKLGNQ------KMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIAYA 88 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~------~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~ 88 (210)
.+...|+||++.+.++ .+.++|||.||..|+.+|++ ....||.||..+...++...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----------NANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-----------TCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-----------hCCCCCCCCCcCcccccccc
Confidence 4567999999988653 27899999999999999963 33589999999988877543
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=1.5e-10 Score=71.98 Aligned_cols=47 Identities=26% Similarity=0.549 Sum_probs=38.6
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
.+...|+||.+.+.++ ++++|||.||..|+..+ ...||.||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~--------------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP-KLLPCLHTLCSGCLEAS--------------GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC-SCSTTSCCSBTTTCSSS--------------SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe-EEcCCCCcccHHHHccC--------------CCCCCcCCcEeecC
Confidence 4567899999999874 88999999999998652 35899999987653
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=2.6e-10 Score=81.57 Aligned_cols=47 Identities=23% Similarity=0.560 Sum_probs=39.2
Q ss_pred CccccccccccccCCCeec-CCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 23 DEETCPICQEKLGNQKMVF-QCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
+...|+||.+.+.++ +.+ +|||.||..|+..|+ . ..||.||.++...
T Consensus 21 ~~~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~-----------~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREP-VCLGGCEHIFCSNCVSDCI-----------G--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGT-----------T--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHh-----------c--CCCcCCCCcCccc
Confidence 457899999999875 666 999999999999984 2 5899999987543
No 49
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=1.2e-09 Score=75.04 Aligned_cols=59 Identities=24% Similarity=0.492 Sum_probs=45.4
Q ss_pred CCccccccccccccCCCeecC-CCCcchHhhHHHHHHHhhhccccCCCccccccC--Cccc-ccCCCeE
Q 028376 22 ADEETCPICQEKLGNQKMVFQ-CGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPT--CRQR-TDIGNIA 86 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~-CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~--Cr~~-~~~~~l~ 86 (210)
.+...||||++.+.++ ++++ |||.||..||..|+..... ......||+ |+.. +...+++
T Consensus 5 ~~~~~CPI~~~~~~dP-V~~~~cGh~f~r~cI~~~l~~~~~-----~~~~~~CP~tgc~~~~l~~~~L~ 67 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP-VKNKVCGHTYEEDAIVRMIESRQK-----RKKKAYCPQIGCSHTDIRKSDLI 67 (94)
T ss_dssp SSCCBCTTTCSBCSSE-EEESSSCCEEEHHHHHHHHHHHHT-----TTCCBCCCSTTCCCCCBCGGGEE
T ss_pred CcEeECcCcCchhcCC-EEcCCCCCeecHHHHHHHHHHccC-----cCCCCCCCcCcCcccccCHhhCc
Confidence 3567899999999985 8885 9999999999999865310 124568999 8876 7666654
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.90 E-value=3e-10 Score=72.58 Aligned_cols=51 Identities=31% Similarity=0.667 Sum_probs=39.7
Q ss_pred cCCCCccccccccccccCCCeec--CCCCc-chHhhHHHHHHHhhhccccCCCccccccCCccccc
Q 028376 19 LSKADEETCPICQEKLGNQKMVF--QCGHF-TCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81 (210)
Q Consensus 19 l~~~~~~~C~iC~~~~~~~~~~~--~CgH~-fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 81 (210)
+.+.+...|+||++...+. +++ +|||. ||.+|+..|... ...||+||.++.
T Consensus 3 l~~~~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~-----------~~~CPiCR~~i~ 56 (64)
T 2vje_A 3 LPLNAIEPCVICQGRPKNG-CIVHGKTGHLMACFTCAKKLKKR-----------NKPCPVCRQPIQ 56 (64)
T ss_dssp --CGGGSCCTTTSSSCSCE-EEEETTEEEEEECHHHHHHHHHT-----------TCCCTTTCCCCC
T ss_pred CCCCCcCCCCcCCCCCCCE-EEECCCCCChhhHHHHHHHHHHc-----------CCcCCCcCcchh
Confidence 3455678999999988774 655 99999 899999998532 347999999874
No 51
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.89 E-value=8e-10 Score=77.63 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=39.4
Q ss_pred CCccccccccccccCC-----------------CeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccccc
Q 028376 22 ADEETCPICQEKLGNQ-----------------KMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~-----------------~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 81 (210)
.++..|+||++.+... .++++|||.||..|+..|+. ....||+||..+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-----------~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-----------TRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-----------TCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-----------cCCcCcCCCCcce
Confidence 4567899999887643 25589999999999999963 3568999999864
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.89 E-value=8.8e-10 Score=93.58 Aligned_cols=52 Identities=29% Similarity=0.574 Sum_probs=43.2
Q ss_pred ccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 24 EETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
...|+||++.+.+ ++.++|||.||..|+..|+.. ....||.||.++....++
T Consensus 332 ~~~C~ICle~~~~-pv~lpCGH~FC~~Ci~~wl~~----------~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKD-VKIEPCGHLMCTSCLTSWQES----------EGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCC-EEEETTCCEECHHHHHHHHHH----------TCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCC-eEEeCCCChhhHHHHHHHHhc----------CCCCCCCCCCccCCceeE
Confidence 4789999999877 588999999999999999742 345899999998776544
No 53
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=6.2e-10 Score=73.28 Aligned_cols=53 Identities=28% Similarity=0.679 Sum_probs=40.9
Q ss_pred HHHHHhcCCCCccccccccccccCCCeecCCCCc-chHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 13 KHRIESLSKADEETCPICQEKLGNQKMVFQCGHF-TCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 13 ~~~~~~l~~~~~~~C~iC~~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
++.++.+ .+...|+||++.+.+ +++++|||. ||..|+... ..||.||.++...
T Consensus 16 ~~~~~~~--~~~~~C~IC~~~~~~-~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 16 EEQLRRL--QEEKLCKICMDRNIA-IVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFK 69 (75)
T ss_dssp HHHHHHH--HHHHSCSSSCSSCCC-BCCSSSCCCCBCHHHHHHC---------------SBCTTTCCBCCCC
T ss_pred HHHHHcC--CCCCCCCcCCCCCCC-EEEecCCCHHHHHHHhhCC---------------CCCccCCceecCc
Confidence 4444444 245689999999887 488999999 999999643 4899999988653
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=1e-09 Score=89.42 Aligned_cols=53 Identities=13% Similarity=-0.028 Sum_probs=43.2
Q ss_pred CccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
+...|+||.+.+.+ |++++|||.||..|+..|+.. + ...||.||.++...+++
T Consensus 207 ~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~---------~-~~~cP~~~~~~~~~~l~ 259 (281)
T 2c2l_A 207 DYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQR---------V-GHFNPVTRSPLTQEQLI 259 (281)
T ss_dssp STTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHH---------T-CSSCTTTCCCCCGGGCE
T ss_pred cccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHH---------C-CCCCcCCCCCCchhcCc
Confidence 45789999999998 499999999999999999854 1 12499999988765543
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.87 E-value=3.5e-10 Score=83.60 Aligned_cols=51 Identities=22% Similarity=0.480 Sum_probs=41.6
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
.+...|+||.+.+.++ +.++|||.||..|+..|+. .....||.||.++...
T Consensus 29 ~~~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILS----------SGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGG----------GSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhhcCc-EECCCCCccCHHHHHHHHh----------cCCCCCCCCCCccccc
Confidence 4567899999999875 8899999999999999963 2335899999976443
No 56
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.84 E-value=1.8e-09 Score=82.58 Aligned_cols=53 Identities=13% Similarity=-0.011 Sum_probs=43.5
Q ss_pred CccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
+...||||.+.+.+ |++++|||.||..|+..|+.. .+ ..||.|+.++...++.
T Consensus 105 ~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~---------~~-~tcP~t~~~l~~~~L~ 157 (179)
T 2f42_A 105 DYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQR---------VG-HFDPVTRSPLTQDQLI 157 (179)
T ss_dssp GGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHH---------TC-SBCTTTCCBCCGGGCE
T ss_pred HhhcccCccccCCC-CeECCCCCEECHHHHHHHHHh---------CC-CCCCCCcCCCChhhCc
Confidence 45789999999998 589999999999999999854 11 2699999988766543
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.84 E-value=4.1e-09 Score=97.98 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=64.6
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
.|.|+..|.+.|..+.. .+.|+||||||+.++++|+..|...||+|.+++|+|+ ..+|.++|++|+.++..
T Consensus 554 ~s~K~~~L~~lL~~~~~--~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~------~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKK--DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVP------SAQRRISIDHFNSPDSN 624 (800)
T ss_dssp TCHHHHHHHHHHHHHTT--TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSC------HHHHHHHHHTTSSTTCS
T ss_pred cChHHHHHHHHHHHHhh--CCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCC------HHHHHHHHHHhhCCCCC
Confidence 58899999999998864 4789999999999999999999999999999999987 99999999999985443
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.82 E-value=8.3e-10 Score=72.50 Aligned_cols=44 Identities=32% Similarity=0.751 Sum_probs=37.3
Q ss_pred CccccccccccccCCCeecCCCCc-chHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHF-TCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
+...|+||++.+.+ ++.++|||. ||..|+..| ..||.||.++..
T Consensus 23 ~~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA-IVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC-EEEETTCCBCCCHHHHTTC---------------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC-EEEcCCCChhHHHHhhhcC---------------ccCCCcCcCccC
Confidence 34689999999887 488899999 999998765 489999998754
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.82 E-value=2.2e-09 Score=81.60 Aligned_cols=54 Identities=22% Similarity=0.442 Sum_probs=44.7
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
.+...|+||.+.+.++ +.++|||.||..|+..|+... ...||.||.++...++.
T Consensus 16 ~~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~~~~~ 69 (170)
T 3hcs_A 16 ESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDA----------GHKCPVDNEILLENQLF 69 (170)
T ss_dssp CGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHH----------CSBCTTTCCBCCGGGCE
T ss_pred CCCCCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhC----------CCCCCCCccCcchhhhh
Confidence 4567999999999874 889999999999999997541 23899999998876654
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=3.4e-09 Score=68.39 Aligned_cols=46 Identities=28% Similarity=0.655 Sum_probs=38.5
Q ss_pred CCCccccccccccccCCCeecCCCCc-chHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 21 KADEETCPICQEKLGNQKMVFQCGHF-TCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
+.+...|.||++...+ .++++|||. ||..|+... ..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~-~v~~pCgH~~~C~~C~~~~---------------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN-WVLLPCRHTCLCDGCVKYF---------------QQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCC-CEETTTTBCCSCTTHHHHC---------------SSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCC-EEEECCCChhhhHHHHhcC---------------CCCCCCCcchhc
Confidence 3456789999998876 589999999 999999843 389999998755
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.79 E-value=1e-09 Score=69.86 Aligned_cols=47 Identities=21% Similarity=0.670 Sum_probs=37.6
Q ss_pred CccccccccccccCCCeec--CCCCc-chHhhHHHHHHHhhhccccCCCccccccCCccccc
Q 028376 23 DEETCPICQEKLGNQKMVF--QCGHF-TCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~--~CgH~-fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 81 (210)
....|+||++...+. +++ +|||. ||..|...+.+. ...||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~-----------~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKA-----------GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHT-----------TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHh-----------CCcCCCcCchhh
Confidence 456899999987763 555 99998 999999988532 258999999874
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=1.9e-09 Score=74.06 Aligned_cols=55 Identities=20% Similarity=0.521 Sum_probs=41.1
Q ss_pred CCccccccccccccCCCee--cCCCCcchHhhHHHHHHHhhhccccCCCccccccC--Cccc
Q 028376 22 ADEETCPICQEKLGNQKMV--FQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPT--CRQR 79 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~--~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~--Cr~~ 79 (210)
.+...|+||++.+..+..+ .+|||.||.+|+..+++...... ......||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g---~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEG---LETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHC---SCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcC---CcccccCccccCCCC
Confidence 4567899999987654333 37999999999999987654321 124578999 9987
No 63
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.77 E-value=3e-09 Score=77.15 Aligned_cols=56 Identities=25% Similarity=0.640 Sum_probs=45.4
Q ss_pred CCCCccccccccccccCC------CeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 20 SKADEETCPICQEKLGNQ------KMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~------~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
...+...|+||++.+..+ .+.++|||.||..|+.+|++. ...||+||..+..+++.
T Consensus 68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINHKRYH 129 (133)
T ss_dssp CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-----------CSBCTTTCCBCCGGGEE
T ss_pred cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-----------CCCCCCCCCcCChhcce
Confidence 346678899999887642 277899999999999999754 34899999999888765
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.74 E-value=1.8e-09 Score=71.82 Aligned_cols=53 Identities=28% Similarity=0.671 Sum_probs=41.0
Q ss_pred HHHHHhcCCCCccccccccccccCCCeecCCCCc-chHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 13 KHRIESLSKADEETCPICQEKLGNQKMVFQCGHF-TCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 13 ~~~~~~l~~~~~~~C~iC~~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
++.++.+. +...|+||++.+.+ +++++|||. ||..|+..+ ..||.||.++...
T Consensus 9 ~~~~~~l~--~~~~C~IC~~~~~~-~v~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 9 QEKLRKLK--EAMLCMVCCEEEIN-STFCPCGHTVCCESCAAQL---------------QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHHHHHH--HHTBCTTTSSSBCC-EEEETTCBCCBCHHHHTTC---------------SBCTTTCCBCCEE
T ss_pred HHHHHcCC--CCCEeEEeCcccCc-EEEECCCCHHHHHHHHHhc---------------CcCCCCCchhhCe
Confidence 34444443 34689999998887 588999999 999998765 2899999987664
No 65
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.73 E-value=2.5e-08 Score=90.62 Aligned_cols=70 Identities=11% Similarity=0.285 Sum_probs=61.5
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhc
Q 028376 119 SYGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRH 195 (210)
Q Consensus 119 ~~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~ 195 (210)
..|.|+..|...+..+.. .++.|+||||||+.++++|+..|...|+.|.+++|+|+ ..+|.+++++|+++
T Consensus 396 ~~s~K~~~l~~ll~~~~~-~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~------~~~R~~~i~~F~~~ 465 (644)
T 1z3i_X 396 QLSGKMLVLDYILAMTRT-TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMS------IKKRAKIVERFNNP 465 (644)
T ss_dssp GGSHHHHHHHHHHHHHHH-HCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCC------HHHHHHHHHHHHST
T ss_pred ccChHHHHHHHHHHHHhh-cCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCC------HHHHHHHHHHhcCC
Confidence 347898877777666653 46889999999999999999999999999999999987 99999999999983
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.72 E-value=3.2e-09 Score=85.24 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=43.4
Q ss_pred CccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccC--CcccccCCCeE
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPT--CRQRTDIGNIA 86 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~--Cr~~~~~~~l~ 86 (210)
....||||++.+.+|...+.|||.||..|+..|++. .+...||+ |+..+...++.
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~---------~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQG---------YTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTT---------CSCEECSGGGCSCEECGGGEE
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHh---------CCCCCCCcccccCcCchhhCC
Confidence 456799999999986334699999999999999532 24468999 99988777654
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.72 E-value=1.8e-09 Score=77.05 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=1.9
Q ss_pred CCCccccccccccccCC-----------------CeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 21 KADEETCPICQEKLGNQ-----------------KMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 21 ~~~~~~C~iC~~~~~~~-----------------~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
+.+...|+||++.+..+ .+.++|+|.||..|+.+|+.. ...||+||.++...
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-----------~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-----------RQVCPLDNREWEFQ 113 (117)
T ss_dssp CCCC----------------------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-----------CCcCCCCCCeeeee
Confidence 34567899999887642 233699999999999999643 45899999986543
No 68
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=3e-08 Score=65.99 Aligned_cols=53 Identities=17% Similarity=0.476 Sum_probs=41.5
Q ss_pred CCcccccccccccc-CCCeecCCC-----CcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 22 ADEETCPICQEKLG-NQKMVFQCG-----HFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 22 ~~~~~C~iC~~~~~-~~~~~~~Cg-----H~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
.+...|.||++.+. ...++++|. |.|+..|+.+|+.. .....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~---------~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS---------SDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH---------HCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh---------CCCCCCCCCCCeeecC
Confidence 45678999998764 234778996 99999999999865 2345899999988655
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.50 E-value=9.3e-08 Score=60.20 Aligned_cols=54 Identities=9% Similarity=0.004 Sum_probs=44.9
Q ss_pred ccccccccccccCCCeec-CCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeEEcc
Q 028376 24 EETCPICQEKLGNQKMVF-QCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIAYAD 89 (210)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 89 (210)
...|+||.+.+.++ +++ +|||+|+..|+.+|+... ..||+.+.++...+++...
T Consensus 3 ~~~CpIs~~~m~dP-V~~~~sG~~yer~~I~~~l~~~-----------~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRP-VLSPKSRTIFEKSLLEQYVKDT-----------GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSE-EEETTTTEEEEHHHHHHHHHHH-----------SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCC-EEeCCCCcEEcHHHHHHHHHhC-----------CCCcCCcCCCChhhcEECc
Confidence 36799999999985 787 999999999999998641 2599999999988876543
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.48 E-value=3.8e-07 Score=79.87 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=62.8
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhC-CceEEEeeCCCCCCcchhhHhhhHHHHHHhhc
Q 028376 119 SYGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIAN-NITCIKMKGENHKLPSANLQHRNALQKELTRH 195 (210)
Q Consensus 119 ~~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~-gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~ 195 (210)
..+.|+.++++.|.++.. ++.|+|||++|..+++.+...|... |+.+..++|+|+ ..+|.+++++|+++
T Consensus 322 ~~s~K~~~l~~~l~~~~~--~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~------~~~R~~~~~~F~~~ 391 (500)
T 1z63_A 322 RRSGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS------KKERDDIISKFQNN 391 (500)
T ss_dssp TTCHHHHHHHHHHHHHHT--TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSC------HHHHHHHHHHHHHC
T ss_pred hcchhHHHHHHHHHHHHc--cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCC------HHHHHHHHHHhcCC
Confidence 457999999999988763 5889999999999999999999986 999999999987 99999999999984
No 71
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.42 E-value=7e-07 Score=76.56 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=64.3
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeC--------CCCCCcchhhHhhhHHHH
Q 028376 119 SYGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKG--------ENHKLPSANLQHRNALQK 190 (210)
Q Consensus 119 ~~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G--------~m~~~~~~~~~~R~~~l~ 190 (210)
..+.|+.+|++.|..+....++.|+|||+++..+++.+...|...|+.+..++| +|+ ..+|.++++
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~------~~~r~~~~~ 413 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS------QREQKLILD 413 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------------CCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCC------HHHHHHHHH
Confidence 567899999999998876677899999999999999999999999999999999 755 999999999
Q ss_pred HHhhcCC
Q 028376 191 ELTRHMP 197 (210)
Q Consensus 191 ~F~~~~p 197 (210)
.|+++..
T Consensus 414 ~F~~~~~ 420 (494)
T 1wp9_A 414 EFARGEF 420 (494)
T ss_dssp HHHHTSC
T ss_pred HHhcCCc
Confidence 9998543
No 72
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.42 E-value=7.8e-08 Score=80.88 Aligned_cols=54 Identities=30% Similarity=0.712 Sum_probs=42.0
Q ss_pred chHHHHHhcCCCCccccccccccccCCCeecCCCCc-chHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 11 STKHRIESLSKADEETCPICQEKLGNQKMVFQCGHF-TCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 11 ~~~~~~~~l~~~~~~~C~iC~~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
..++.++.+. +...|+||++.+.+ ++.++|||. ||..|+..+ ..||.||.++..
T Consensus 284 ~~~~~~~~l~--~~~~C~IC~~~~~~-~v~lpCgH~~fC~~C~~~~---------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 284 SLEEQLRRLQ--EERTCKVCMDKEVS-VVFIPCGHLVVCQECAPSL---------------RKCPICRGIIKG 338 (345)
T ss_dssp CHHHHHHHHH--TTCBCTTTSSSBCC-EEEETTCCEEECTTTGGGC---------------SBCTTTCCBCCE
T ss_pred cHHHHHHhCc--CCCCCCccCCcCCc-eEEcCCCChhHhHHHHhcC---------------CcCCCCCCCccC
Confidence 3444555443 34789999999887 488899999 999998865 489999998753
No 73
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.38 E-value=2.7e-07 Score=76.76 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=49.6
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 119 SYGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 119 ~~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
..|.|+.-|-+.|..+++ .+.|++||||++.+||++|..|...|+.|.|+||+..
T Consensus 106 ~~SGKf~~L~~LL~~l~~--~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~ 160 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQE--YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSI 160 (328)
T ss_dssp HTCHHHHHHHHHHHHHTT--SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC
T ss_pred HcCccHHHHHHHHHHHHh--CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCch
Confidence 369999988888888875 4789999999999999999999999999999999954
No 74
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=3.6e-07 Score=59.65 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=39.6
Q ss_pred CccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
....|.||.+.+.....-..|+|.|+..|+.+|++. .....||.||.....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~---------~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS---------NAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTT---------CSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHh---------cCCCCCCCCcCcCCC
Confidence 447899999988754344599999999999999732 233789999987653
No 75
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.25 E-value=3.8e-07 Score=62.20 Aligned_cols=47 Identities=21% Similarity=0.503 Sum_probs=38.7
Q ss_pred ccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 26 TCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 26 ~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
-|++|.-++..-+.+.||.|+||.+|...|.. .....||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~----------~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEK----------KGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHH----------TTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHh----------ccCCCCcCcCCeeee
Confidence 58999988877678899999999999998842 345689999998754
No 76
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.21 E-value=7.6e-06 Score=61.80 Aligned_cols=68 Identities=9% Similarity=0.065 Sum_probs=60.2
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
.+.|+++|.+.|... +..|+|||+.+....+.+...|...|++...++|.|+ ..+|..+++.|+++..
T Consensus 15 ~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~------~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMP------QEERLSRYQQFKDFQR 82 (172)
T ss_dssp GGGHHHHHHHHHHHS----CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC------HHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHhC----CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCC------HHHHHHHHHHHHCCCC
Confidence 467999988877643 5679999999999999999999999999999999977 9999999999997443
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.18 E-value=4.9e-06 Score=63.70 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=53.3
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
.+.|+++|++.|... .++.|+|||+++....+.+...|...|++...+.|+|+ ..+|..+++.|+.+.
T Consensus 29 ~~~K~~~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~------~~~r~~~~~~f~~g~ 96 (185)
T 2jgn_A 29 ESDKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRS------QRDREEALHQFRSGK 96 (185)
T ss_dssp GGGHHHHHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------------CHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCC------HHHHHHHHHHHHcCC
Confidence 468999999888753 36789999999999999999999999999999999977 999999999999744
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.17 E-value=9.9e-06 Score=60.50 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=60.3
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 119 SYGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 119 ~~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
..+.|++.|.+.|... ++.|+|||.++....+.+...|...|++...++|+|+ ..+|..+++.|+.+.
T Consensus 18 ~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~------~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE----NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMI------QEDRFDVMNEFKRGE 85 (163)
T ss_dssp CGGGHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC------HHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCC------HHHHHHHHHHHHcCC
Confidence 3468999998887653 4679999999999999999999999999999999977 999999999999743
No 79
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.16 E-value=1.9e-06 Score=53.89 Aligned_cols=53 Identities=25% Similarity=0.458 Sum_probs=40.5
Q ss_pred CCCCccccccccccccCCCeecCCC--C---cchHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 20 SKADEETCPICQEKLGNQKMVFQCG--H---FTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~~~~~~Cg--H---~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
-+++...|.||++.... ..++||. | .|+..|+.+|+.. .+...||+|+.++..
T Consensus 2 e~~~~~~CrIC~~~~~~-~l~~PC~C~gs~~~~H~~Cl~~W~~~---------~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 2 EDEDVPVCWICNEELGN-ERFRACGCTGELENVHRSCLSTWLTI---------SRNTACQICGVVYNT 59 (60)
T ss_dssp TTCSCCEETTTTEECSC-CCCCSCCCSSGGGSCCHHHHHHHHHH---------HTCSBCTTTCCBCCC
T ss_pred CCCCCCEeEEeecCCCC-ceecCcCCCCchhhhHHHHHHHHHHh---------CCCCccCCCCCeeec
Confidence 35667899999887655 4678865 4 8999999999864 234689999998753
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.08 E-value=2e-05 Score=58.84 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 122 TKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 122 sKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
.|+++|.+.+... +..|+|||..+....+.+...|...|+....++|.|+ ..+|..+++.|+.+.
T Consensus 16 ~K~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 16 YKYECLTDLYDSI----SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLP------QQERDTIMKEFRSGS 80 (165)
T ss_dssp GHHHHHHHHHHHT----TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSC------HHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCC------HHHHHHHHHHHHcCC
Confidence 4999888877753 5689999999999999999999999999999999977 999999999999743
No 81
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=98.06 E-value=1.3e-05 Score=61.66 Aligned_cols=66 Identities=9% Similarity=0.198 Sum_probs=58.2
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
...|+..|++.|.. .+.|+|||+++....+.+...|...|++...++|.|+ ..+|.++++.|+++.
T Consensus 39 ~~~K~~~L~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~------~~~R~~~l~~F~~g~ 104 (191)
T 2p6n_A 39 EEAKMVYLLECLQK-----TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKD------QEERTKAIEAFREGK 104 (191)
T ss_dssp GGGHHHHHHHHHTT-----SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSC------HHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHh-----CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCC------HHHHHHHHHHHhcCC
Confidence 46899988877753 2459999999999999999999999999999999977 999999999999743
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.99 E-value=2.9e-05 Score=58.55 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 122 TKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 122 sKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
.|+++|.+.+.. .+..|+|||.++....+.+...|...|+....++|.|+ ..+|..+++.|+++.
T Consensus 20 ~K~~~L~~ll~~----~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~------~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 20 DKYQALCNIYGS----ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELT------VEQRASIIQRFRDGK 84 (175)
T ss_dssp HHHHHHHHHHTT----SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCC------HHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCC------HHHHHHHHHHHHcCC
Confidence 488888776653 35679999999999999999999999999999999977 999999999999743
No 83
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.94 E-value=5.5e-06 Score=68.86 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=39.7
Q ss_pred CccccccccccccCCC-------eecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccC
Q 028376 23 DEETCPICQEKLGNQK-------MVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDI 82 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~-------~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 82 (210)
...+|+||...+.+.. ...+|||.|+..|+.+|++.....-..-..-...||.||.++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4568999987765411 13589999999999999976321100001223579999998754
No 84
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.93 E-value=9.5e-06 Score=71.36 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=40.2
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhC------------CceEEEeeCCCCCCcchhhHhhhH
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIAN------------NITCIKMKGENHKLPSANLQHRNA 187 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~------------gi~~~~~~G~m~~~~~~~~~~R~~ 187 (210)
.+.|+.+|++.|.+.....++.|+|||+++..+++.+...|... |..+..++|+|+ ..+|.+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~R~~ 443 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT------LPSQKG 443 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccC------HHHHHH
Confidence 58899999999988776677899999999999999999999887 566666677766 999999
Q ss_pred HHHHHhh
Q 028376 188 LQKELTR 194 (210)
Q Consensus 188 ~l~~F~~ 194 (210)
+++.|++
T Consensus 444 ~~~~F~~ 450 (556)
T 4a2p_A 444 VLDAFKT 450 (556)
T ss_dssp -------
T ss_pred HHHHhcc
Confidence 9999998
No 85
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.92 E-value=1.3e-05 Score=70.35 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=41.3
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCC------------ceEEEeeCCCCCCcchhhHhhhH
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANN------------ITCIKMKGENHKLPSANLQHRNA 187 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~g------------i~~~~~~G~m~~~~~~~~~~R~~ 187 (210)
.+.|+++|++.|.++....++.|+|||+++..+++.+...|...| ..+..++|+|+ ..+|.+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~R~~ 442 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMT------LPAQKC 442 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccC------HHHHHH
Confidence 478999999999988877788999999999999999999999875 35555566866 999999
Q ss_pred HHHHHhh
Q 028376 188 LQKELTR 194 (210)
Q Consensus 188 ~l~~F~~ 194 (210)
+++.|++
T Consensus 443 ~~~~F~~ 449 (555)
T 3tbk_A 443 VLEAFRA 449 (555)
T ss_dssp -------
T ss_pred HHHHHhc
Confidence 9999997
No 86
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.78 E-value=2.2e-05 Score=74.13 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=40.2
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhC------------CceEEEeeCCCCCCcchhhHhhhH
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIAN------------NITCIKMKGENHKLPSANLQHRNA 187 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~------------gi~~~~~~G~m~~~~~~~~~~R~~ 187 (210)
.+.|+..|++.|.......++.|+|||+++..+++.|...|..+ |..+..++|+|+ ..+|.+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~------~~eR~~ 684 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT------LPSQKG 684 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCC------HHHHHH
Confidence 47899999999998776677899999999999999999999987 666666677766 999999
Q ss_pred HHHHHhh
Q 028376 188 LQKELTR 194 (210)
Q Consensus 188 ~l~~F~~ 194 (210)
+++.|+.
T Consensus 685 il~~Fr~ 691 (936)
T 4a2w_A 685 VLDAFKT 691 (936)
T ss_dssp -------
T ss_pred HHHHhhc
Confidence 9999997
No 87
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.77 E-value=2.5e-05 Score=72.45 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=39.7
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhC------------CceEEEeeCCCCCCcchhhHhhhH
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIAN------------NITCIKMKGENHKLPSANLQHRNA 187 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~------------gi~~~~~~G~m~~~~~~~~~~R~~ 187 (210)
.+.|+..|++.|.......++.|+|||+++..+++.|...|..+ |..+..++|+|+ ..+|..
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~------~~eR~~ 684 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT------LPSQKG 684 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCC------HHHHHH
Confidence 48899999999988766677899999999999999999999884 666677788866 999999
Q ss_pred HHHHHhh
Q 028376 188 LQKELTR 194 (210)
Q Consensus 188 ~l~~F~~ 194 (210)
+++.|++
T Consensus 685 ~l~~F~~ 691 (797)
T 4a2q_A 685 VLDAFKT 691 (797)
T ss_dssp -------
T ss_pred HHHHhhc
Confidence 9999998
No 88
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.76 E-value=0.00011 Score=57.24 Aligned_cols=68 Identities=7% Similarity=0.155 Sum_probs=60.3
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 119 SYGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 119 ~~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
....|+++|.+.+.. .++.++|||.......+.+...|...|+....++|+|+ ..+|.++++.|+++.
T Consensus 14 ~~~~k~~~l~~ll~~----~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~------~~~r~~~~~~f~~g~ 81 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYV----ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLS------QGERERVLGAFRQGE 81 (212)
T ss_dssp CTTSHHHHHHHHHHH----HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSC------HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCC------HHHHHHHHHHHHCCC
Confidence 447899999988764 24679999999999999999999999999999999977 999999999999754
No 89
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.71 E-value=5.8e-05 Score=71.53 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=61.4
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHH-hCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 119 SYGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFI-ANNITCIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 119 ~~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~-~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
..+.|+.+|.+.|.. .++.|+|||+++...++.+...|. ..|+++..++|+|+ ..+|.++++.|++++
T Consensus 486 ~~~~K~~~L~~ll~~----~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~------~~~R~~~l~~F~~g~ 554 (968)
T 3dmq_A 486 NFDPRVEWLMGYLTS----HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS------IIERDRAAAWFAEED 554 (968)
T ss_dssp TTSHHHHHHHHHHHH----TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC------TTHHHHHHHHHHSTT
T ss_pred CccHHHHHHHHHHHh----CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC------HHHHHHHHHHHhCCC
Confidence 457899999988875 568999999999999999999999 47999999999977 999999999999854
No 90
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=97.58 E-value=5.2e-05 Score=68.90 Aligned_cols=73 Identities=10% Similarity=0.119 Sum_probs=58.3
Q ss_pred CCchHHHHHHHHHHHHhcCC-CCcEEEEcchHHHHHHHHHHHHhC------CceEEEeeCC--------CCCCcchhhHh
Q 028376 120 YGTKIEAVTRRILWIKSTDP-KAKILVFSSWNDVLDVLEHAFIAN------NITCIKMKGE--------NHKLPSANLQH 184 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~-~~K~iVFSQf~~~L~li~~~L~~~------gi~~~~~~G~--------m~~~~~~~~~~ 184 (210)
.+.|++.|++.|.......+ +.|+|||+++..+.+.|...|..+ |++...|+|+ |+ ..+
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~------~~e 452 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMT------QNE 452 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCC------HHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCC------HHH
Confidence 46788888888887666666 899999999999999999999998 9999999999 77 999
Q ss_pred hhHHHHHHhhcCCC
Q 028376 185 RNALQKELTRHMPS 198 (210)
Q Consensus 185 R~~~l~~F~~~~p~ 198 (210)
|.++++.|+++..+
T Consensus 453 R~~~~~~F~~g~~~ 466 (699)
T 4gl2_A 453 QKEVISKFRTGKIN 466 (699)
T ss_dssp HHHHHHHHCC---C
T ss_pred HHHHHHHHhcCCCc
Confidence 99999999985544
No 91
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.70 E-value=1.1e-05 Score=60.62 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=58.1
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
..|++.|.+.+.. .++.|+|||.++....+.+...|...|+....++|.|+ ..+|..+++.|+++..
T Consensus 15 ~~k~~~l~~ll~~----~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~------~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 15 EHKTALLVHLLKQ----PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMV------QGKRNEAIKRLTEGRV 81 (170)
Confidence 5688877776654 34679999999999999999999999999999999977 9999999999997543
No 92
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.44 E-value=0.00023 Score=64.60 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=46.4
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCC----ceEEEeeC--------CCCCCcchhhHhhhH
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANN----ITCIKMKG--------ENHKLPSANLQHRNA 187 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~g----i~~~~~~G--------~m~~~~~~~~~~R~~ 187 (210)
.+.|+..|.+.|.......++.++|||+++....+.+...|...| ++...+.| +|+ ..+|.+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~------~~eR~~ 451 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT------LPAQKC 451 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCC------HHHHHH
Confidence 568999999999887666678899999999999999999999999 99999966 655 999999
Q ss_pred HHHHHhh-cCCC
Q 028376 188 LQKELTR-HMPS 198 (210)
Q Consensus 188 ~l~~F~~-~~p~ 198 (210)
+++.|+. +...
T Consensus 452 v~~~F~~~g~~~ 463 (696)
T 2ykg_A 452 ILDAFKASGDHN 463 (696)
T ss_dssp ---------CCS
T ss_pred HHHHHHhcCCcc
Confidence 9999997 4443
No 93
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=97.40 E-value=0.00074 Score=55.55 Aligned_cols=68 Identities=7% Similarity=0.159 Sum_probs=60.3
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 119 SYGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 119 ~~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
..+.|+++|.+.+... ++.++|||.......+.+...|...|+....++|.|+ ..+|.++++.|.++.
T Consensus 11 ~~~~K~~~L~~ll~~~----~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~------~~~r~~~~~~f~~g~ 78 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMS------QGERERVMGAFRQGE 78 (300)
T ss_dssp CSSSHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCC------THHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCC------HHHHHHHHHHhhcCC
Confidence 4468999998877643 3789999999999999999999999999999999977 999999999999854
No 94
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.23 E-value=0.0014 Score=54.76 Aligned_cols=68 Identities=9% Similarity=0.032 Sum_probs=58.8
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
...|...|.+.+.. .+..|+|||.......+.+...|...|+....++|+|+ ..+|..+++.|+++..
T Consensus 234 ~~~~~~~l~~~l~~----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~r~~~~~~f~~~~~ 301 (391)
T 1xti_A 234 DNEKNRKLFDLLDV----LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMP------QEERLSRYQQFKDFQR 301 (391)
T ss_dssp GGGHHHHHHHHHHH----SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSC------HHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHHh----cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCC------HHHHHHHHHHHhcCCC
Confidence 45677777776664 35789999999999999999999999999999999977 9999999999997543
No 95
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.08 E-value=0.0019 Score=53.17 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=58.9
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 119 SYGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 119 ~~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
....|+++|.+.+. .++.|+|||.......+.+...|...|+....++|+|+ ..+|..+++.|+++..
T Consensus 222 ~~~~~~~~l~~~l~-----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~r~~~~~~f~~~~~ 289 (367)
T 1hv8_A 222 NENERFEALCRLLK-----NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLS------QSQREKVIRLFKQKKI 289 (367)
T ss_dssp CGGGHHHHHHHHHC-----STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSC------HHHHHHHHHHHHTTSS
T ss_pred ChHHHHHHHHHHHh-----cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCC------HHHHHHHHHHHHcCCC
Confidence 34578887776664 46789999999999999999999999999999999977 9999999999997543
No 96
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.04 E-value=0.0022 Score=54.09 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=57.9
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
..|++.|.+.+... ...|+|||.......+.+...|...|+....++|.|+ ..+|..+++.|+++..
T Consensus 261 ~~k~~~l~~~~~~~----~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~------~~~r~~~~~~f~~g~~ 327 (410)
T 2j0s_A 261 EWKFDTLCDLYDTL----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMP------QKERESIMKEFRSGAS 327 (410)
T ss_dssp THHHHHHHHHHHHH----TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSC------HHHHHHHHHHHHHTSS
T ss_pred HhHHHHHHHHHHhc----CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCC------HHHHHHHHHHHHCCCC
Confidence 34888877776654 3569999999999999999999999999999999977 9999999999998543
No 97
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=96.97 E-value=0.0037 Score=52.70 Aligned_cols=69 Identities=14% Similarity=0.169 Sum_probs=59.3
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
...|...|.+.+... .++.|+|||.......+.+...|...|+....++|.|+ ..+|..+++.|+++..
T Consensus 259 ~~~~~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~------~~~r~~~~~~f~~g~~ 327 (417)
T 2i4i_A 259 ESDKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRS------QRDREEALHQFRSGKS 327 (417)
T ss_dssp GGGHHHHHHHHHHTC---CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC------HHHHHHHHHHHHHTSS
T ss_pred cHhHHHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCC------HHHHHHHHHHHHcCCC
Confidence 456777777766542 35789999999999999999999999999999999977 9999999999997544
No 98
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.90 E-value=0.0042 Score=51.67 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=52.2
Q ss_pred HHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 132 LWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 132 ~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
..+....+..|+|||.......+.+...|...|+....++|.|+ ..+|..+++.|+.+..
T Consensus 235 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~r~~~~~~f~~g~~ 294 (395)
T 3pey_A 235 TELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQ------TQERDRLIDDFREGRS 294 (395)
T ss_dssp HHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSC------HHHHHHHHHHHHTTSC
T ss_pred HHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCC------HHHHHHHHHHHHCCCC
Confidence 33334456789999999999999999999999999999999977 9999999999998543
No 99
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=96.89 E-value=0.0034 Score=53.85 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=57.6
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
...|...|++.|... ..++|||.......+.+...|...|++...++|.|+ ..+|.++++.|+++.
T Consensus 285 ~~~k~~~l~~~l~~~-----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~------~~~R~~~l~~F~~g~ 350 (434)
T 2db3_A 285 KYAKRSKLIEILSEQ-----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRL------QSQREQALRDFKNGS 350 (434)
T ss_dssp GGGHHHHHHHHHHHC-----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSC------HHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHHHHHhC-----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCC------HHHHHHHHHHHHcCC
Confidence 457888888777642 345999999999999999999999999999999977 999999999999754
No 100
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.82 E-value=0.0011 Score=52.68 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=40.0
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
.....|.+|.+.+.....-..|+|.|+..|+..|++. .....||.|+......
T Consensus 178 ~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~---------~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS---------NAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTT---------CSSCBCTTTCCBCCSC
T ss_pred CCCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHh---------CCCCCCCCCCCCCCCC
Confidence 3567899999988764333469999999999999632 3456899999875443
No 101
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.77 E-value=0.004 Score=52.20 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=57.7
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
...|+..+...+.. .+..|+|||.......+.+...|...|+....++|+|+ ..+|..+++.|+++..
T Consensus 242 ~~~k~~~l~~~~~~----~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~r~~~~~~f~~g~~ 309 (400)
T 1s2m_A 242 ERQKLHCLNTLFSK----LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMK------QQERNKVFHEFRQGKV 309 (400)
T ss_dssp GGGHHHHHHHHHHH----SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSC------HHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHHHHHhh----cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCC------HHHHHHHHHHHhcCCC
Confidence 35677776665553 35679999999999999999999999999999999977 9999999999997543
No 102
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.68 E-value=0.008 Score=53.03 Aligned_cols=67 Identities=7% Similarity=0.072 Sum_probs=58.5
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
..|++.|++.|.. .++.++|||.......+.+...|...|+....|+|+|+ ..+|..+++.|.++..
T Consensus 221 ~~~~~~l~~~l~~----~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~------~~~R~~~~~~f~~g~~ 287 (523)
T 1oyw_A 221 FKPLDQLMRYVQE----QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLE------NNVRADVQEKFQRDDL 287 (523)
T ss_dssp SSHHHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC------HHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCC------HHHHHHHHHHHHcCCC
Confidence 4677777777764 36789999999999999999999999999999999977 9999999999998543
No 103
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.64 E-value=0.0058 Score=51.23 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=56.7
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
..|+..|.+.+.. .+..|+|||.......+.+...|...|+....++|.|+ ..+|..+++.|+.+..
T Consensus 251 ~~~~~~l~~~~~~----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~r~~~~~~f~~g~~ 317 (412)
T 3fht_A 251 DEKFQALCNLYGA----ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMM------VEQRAAVIERFREGKE 317 (412)
T ss_dssp HHHHHHHHHHHHH----HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSC------HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhh----cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCC------HHHHHHHHHHHHCCCC
Confidence 3566666665554 34679999999999999999999999999999999977 9999999999997543
No 104
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.59 E-value=0.0036 Score=52.64 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=53.2
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
..|+..+.+.+. ..+..|+|||.......+.+...|...|+....++|+|+ ..+|..+++.|+++..
T Consensus 265 ~~~~~~l~~~~~----~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~------~~~r~~~~~~f~~g~~ 331 (414)
T 3eiq_A 265 EWKLDTLCDLYE----TLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMD------QKERDVIMREFRSGSS 331 (414)
T ss_dssp TTHHHHHHHHHH----SSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CH------HHHHHHHHHHHSCC--
T ss_pred HhHHHHHHHHHH----hCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCC------HHHHHHHHHHHHcCCC
Confidence 347777666555 345679999999999999999999999999999999966 9999999999987443
No 105
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.36 E-value=0.014 Score=50.75 Aligned_cols=69 Identities=7% Similarity=0.046 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 122 TKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 122 sKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
.|.+.+.+.+.+... ....++|||.. +...+.+...|...|.+...++|.|+ ..+|.++++.|+++..+
T Consensus 331 ~~~~~l~~~l~~~~~-~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~------~~~r~~i~~~f~~g~~~ 399 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQ-KDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVD------TETRNIMKTLAENGKGI 399 (510)
T ss_dssp HHHHHHHHHHHHHHT-TTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTT------HHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHh-cCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCC------HHHHHHHHHHHhCCCCC
Confidence 455666666666553 45678899999 88888899999999999999999977 99999999999985544
No 106
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.35 E-value=0.018 Score=51.61 Aligned_cols=55 Identities=2% Similarity=-0.016 Sum_probs=50.1
Q ss_pred cCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 137 TDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 137 ~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
..++.++|||.......+.+...|...|+....|+|+|+ ..+|.++++.|..+..
T Consensus 264 ~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~------~~~R~~~~~~F~~g~~ 318 (591)
T 2v1x_A 264 RYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLE------PEDKTTVHRKWSANEI 318 (591)
T ss_dssp TTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC------HHHHHHHHHHHHTTSS
T ss_pred hccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCC------HHHHHHHHHHHHcCCC
Confidence 346789999999999999999999999999999999977 9999999999997543
No 107
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.26 E-value=0.013 Score=52.05 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=56.7
Q ss_pred CchHHHHHHHHHHHH-hcCCCCcEEEEcchHHHHHHHHHHHHhC---CceEEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 121 GTKIEAVTRRILWIK-STDPKAKILVFSSWNDVLDVLEHAFIAN---NITCIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 121 SsKi~al~~~L~~~~-~~~~~~K~iVFSQf~~~L~li~~~L~~~---gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
..++..+++.|.... ...++.|+|||.......+.+...|... |+....++|.|+ ..+|..+++.|..+.
T Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~------~~~R~~~~~~F~~g~ 341 (579)
T 3sqw_A 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT------QNKRTSLVKRFKKDE 341 (579)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSC------HHHHHHHHHHHHHCS
T ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCC------HHHHHHHHHHhhcCC
Confidence 344545555554433 3367889999999999999999999987 999999999977 999999999999844
No 108
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.20 E-value=0.015 Score=51.25 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=57.3
Q ss_pred CchHHHHHHHHHHH-HhcCCCCcEEEEcchHHHHHHHHHHHHhC---CceEEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 121 GTKIEAVTRRILWI-KSTDPKAKILVFSSWNDVLDVLEHAFIAN---NITCIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 121 SsKi~al~~~L~~~-~~~~~~~K~iVFSQf~~~L~li~~~L~~~---gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
..++..+++.+... ....++.++|||..-....+.+...|... |++...++|.|+ ..+|..+++.|.++.
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~------~~~R~~~~~~f~~g~ 392 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT------QNKRTSLVKRFKKDE 392 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSC------HHHHHHHHHHHHHCS
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCC------HHHHHHHHHHHhcCC
Confidence 44555555555443 33467889999999999999999999986 999999999977 999999999999854
No 109
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.09 E-value=0.03 Score=50.82 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=60.1
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
...++..|++.|..+... +.++|||+.-....+.+...|...|++...++|.|+ ..+|..+++.|..+.
T Consensus 421 ~~~~~~~Ll~~l~~~~~~--~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~------~~~R~~~~~~f~~g~ 489 (664)
T 1c4o_A 421 TENQILDLMEGIRERAAR--GERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELD------AFKRQALIRDLRLGH 489 (664)
T ss_dssp STTHHHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCC------HHHHHHHHHHHHTTS
T ss_pred ccchHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCC------HHHHHHHHHHhhcCC
Confidence 346788888888876643 679999999999999999999999999999999977 999999999998744
No 110
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.06 E-value=0.0049 Score=53.16 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=53.7
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 119 SYGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 119 ~~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
..+.|+..|.+.|.. .++.|+|||+++...++.+...|. + ..++|.|+ ..+|.++++.|+++..+
T Consensus 332 ~~~~k~~~l~~~l~~----~~~~k~lvF~~~~~~~~~l~~~l~---~--~~~~g~~~------~~~R~~~~~~F~~g~~~ 396 (472)
T 2fwr_A 332 NSKNKIRKLREILER----HRKDKIIIFTRHNELVYRISKVFL---I--PAITHRTS------REEREEILEGFRTGRFR 396 (472)
T ss_dssp SCSHHHHHHHHHHHH----TSSSCBCCBCSCHHHHHHHHHHTT---C--CBCCSSSC------SHHHHTHHHHHHHSSCS
T ss_pred cChHHHHHHHHHHHh----CCCCcEEEEECCHHHHHHHHHHhC---c--ceeeCCCC------HHHHHHHHHHHhCCCCC
Confidence 356788888877765 468899999999999999998884 3 35789977 99999999999986554
Q ss_pred C
Q 028376 199 S 199 (210)
Q Consensus 199 ~ 199 (210)
+
T Consensus 397 v 397 (472)
T 2fwr_A 397 A 397 (472)
T ss_dssp B
T ss_pred E
Confidence 4
No 111
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.02 E-value=0.034 Score=50.47 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=60.0
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
..++..|++.|..+.. .+.++|||+.-....+.+...|..+|++...++|.|+ ..+|..+++.|..+..
T Consensus 428 ~~~~~~Ll~~l~~~~~--~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~------~~~R~~~l~~f~~g~~ 496 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIE--RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK------TLERIEIIRDLRLGKY 496 (661)
T ss_dssp TTHHHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCC------HHHHHHHHHHHHHTSC
T ss_pred cchHHHHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCC------HHHHHHHHHHHhcCCe
Confidence 4678888888887663 3679999999999999999999999999999999977 9999999999997443
No 112
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.77 E-value=0.0045 Score=42.19 Aligned_cols=33 Identities=18% Similarity=0.531 Sum_probs=25.2
Q ss_pred CccccccccccccCCCee--cCCCCcchHhhHHHH
Q 028376 23 DEETCPICQEKLGNQKMV--FQCGHFTCCKCFFAM 55 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~--~~CgH~fC~~C~~~~ 55 (210)
+...|++|.+.+..+++. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 457899999753223455 899999999999973
No 113
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.28 E-value=0.033 Score=49.52 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHH-hcCCCCcEEEEcchHHHHHHHHHHHHhCCce--------EEEeeCCCCCCcchhhHhhhHHHHHHh
Q 028376 123 KIEAVTRRILWIK-STDPKAKILVFSSWNDVLDVLEHAFIANNIT--------CIKMKGENHKLPSANLQHRNALQKELT 193 (210)
Q Consensus 123 Ki~al~~~L~~~~-~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~--------~~~~~G~m~~~~~~~~~~R~~~l~~F~ 193 (210)
+...+.+.|..+. ..++..|+|||++.....+.+...|...+.. ...++|.|+ .+|.+++++|+
T Consensus 421 r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-------~~r~~~l~~F~ 493 (590)
T 3h1t_A 421 RTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-------KIGKGHLSRFQ 493 (590)
T ss_dssp THHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-------HHHHHHHHHHh
Confidence 4455555554432 2366789999999999999999999887654 567899853 36999999999
Q ss_pred hcC
Q 028376 194 RHM 196 (210)
Q Consensus 194 ~~~ 196 (210)
+++
T Consensus 494 ~~~ 496 (590)
T 3h1t_A 494 ELE 496 (590)
T ss_dssp CTT
T ss_pred CCC
Confidence 844
No 114
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.09 E-value=0.0037 Score=52.09 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 123 KIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 123 Ki~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
|...+.+.+.. .+..|+|||.......+.+...|...|+....++|+|+ ..+|..+++.|+++..
T Consensus 246 ~~~~l~~~~~~----~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~r~~~~~~f~~~~~ 310 (394)
T 1fuu_A 246 KYECLTDLYDS----ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLP------QQERDTIMKEFRSGSS 310 (394)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHhc----CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCC------HHHHHHHHHHHHCCCC
Confidence 55555544433 34679999999999999999999999999999999977 9999999999987443
No 115
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=93.73 E-value=0.028 Score=49.23 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=50.2
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
..|...+.+.+. ..+..|+|||.......+.+...|...|+....++|+|+ ..+|..+++.|..+...
T Consensus 342 ~~k~~~l~~ll~----~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~------~~~R~~il~~f~~g~~~ 409 (508)
T 3fho_A 342 EHKYNVLVELYG----LLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLE------GAQRDAIMDSFRVGTSK 409 (508)
T ss_dssp HHHHHHHHHHHC-------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----------CTTGGGTHHHHSSSCC
T ss_pred HHHHHHHHHHHH----hcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCC------HHHHHHHHHHHHCCCCe
Confidence 345555554443 345689999999999999999999999999999999976 99999999999875543
No 116
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=93.00 E-value=0.15 Score=33.63 Aligned_cols=55 Identities=25% Similarity=0.584 Sum_probs=39.8
Q ss_pred cCCCCccccccccccccCC----C--eecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 19 LSKADEETCPICQEKLGNQ----K--MVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 19 l~~~~~~~C~iC~~~~~~~----~--~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
++......|.||.+.+... + ..-.|+-..|+.|++--. ..+...||.|..++...
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----------keG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----------REGTQNCPQCKTRYKRL 71 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----------HTSCSSCTTTCCCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----------hccCccccccCCccccc
Confidence 4556678999998875421 1 224788899999998542 36778999999988643
No 117
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=92.98 E-value=0.34 Score=44.62 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=52.7
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
..|..+|++.|...... +.++|||+......+.|...|...||++..+.|+ ..+|.+.+-.|..
T Consensus 457 ~eK~~al~~~I~~~~~~--gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgk--------q~~rE~~ii~~ag 520 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYKK--GQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAK--------YHEKEAEIVAKAG 520 (822)
T ss_dssp HHHHHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSC--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhC--CCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCC--------chHHHHHHHHhCC
Confidence 46889999999876433 5689999999999999999999999999999998 5566666655543
No 118
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.82 E-value=0.11 Score=33.60 Aligned_cols=48 Identities=27% Similarity=0.575 Sum_probs=36.5
Q ss_pred CCCccccccccccccCCCeecCC----CCcchHhhHHHHHHHhhhccccCCCccccccC
Q 028376 21 KADEETCPICQEKLGNQKMVFQC----GHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPT 75 (210)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~~~~~C----gH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~ 75 (210)
......|.+|.+.+++. ...+| +|.||..|-...++++. .....-||.
T Consensus 12 ~~a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~q~------~~~EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKAQG------ATGEVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHHHH------SSSCCCCTT
T ss_pred CCCeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHhcC------CCCcEECCC
Confidence 34557899999999874 45556 79999999999988754 355667775
No 119
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.65 E-value=0.2 Score=40.35 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=43.2
Q ss_pred cCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 137 TDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 137 ~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
...+.|+|||.......+.+...|. ....++|.|+ ..+|.++++.|+++.
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~------~~~r~~~~~~f~~~~ 266 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLP------QSVRNRNIDAFREGE 266 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSC------HHHHHHHHHHHHTTS
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCC------HHHHHHHHHHHHcCC
Confidence 3567899999999999999888887 4678999977 999999999999744
No 120
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=92.08 E-value=0.027 Score=48.56 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
..|...|.+.+.. .+..++|||.......+.+...|...|+....++|.|+ ..+|..+++.|.++...
T Consensus 318 ~~~~~~l~~~~~~----~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~------~~~R~~~~~~f~~g~~~ 385 (479)
T 3fmp_B 318 DEKFQALCNLYGA----ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMM------VEQRAAVIERFREGKEK 385 (479)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhh----ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCC------HHHHHHHHHHHHcCCCc
Confidence 3455555554443 34579999999999999999999999999999999976 99999999999985443
No 121
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=92.04 E-value=0.28 Score=45.59 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=52.5
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
..|..+|++.|.... ..+..+|||+.-....+.|...|...||++..+.|.+. ..+|.-+.+.|+.
T Consensus 424 ~~K~~al~~~i~~~~--~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~------~rEa~iia~agr~ 489 (853)
T 2fsf_A 424 AEKIQAIIEDIKERT--AKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFH------ANEAAIVAQAGYP 489 (853)
T ss_dssp HHHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCH------HHHHHHHHTTTST
T ss_pred HHHHHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChh------HHHHHHHHhcCCC
Confidence 568999999887654 33668999999999999999999999999999999943 4444444455554
No 122
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=91.95 E-value=0.21 Score=46.43 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=46.3
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
...|..+|++.|...... +..+|||+.-....+.|...|...||++..+.|.+.
T Consensus 414 ~~~K~~al~~~i~~~~~~--~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~ 467 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMT--GQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH 467 (844)
T ss_dssp HHHHHHHHHHHHHHHHHH--TCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH
T ss_pred HHHHHHHHHHHHHHHHhc--CCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCcc
Confidence 357899999988865432 567999999999999999999999999999999944
No 123
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=91.43 E-value=0.36 Score=45.18 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=45.9
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
..|..+|++.|..... .+..+|||+.-....+.|...|...||++..+.|.+.
T Consensus 443 ~~K~~al~~~i~~~~~--~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~ 495 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYA--KGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH 495 (922)
T ss_dssp HHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH
T ss_pred HHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh
Confidence 4689999999976543 3567999999999999999999999999999999943
No 124
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.33 E-value=0.25 Score=33.05 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=35.8
Q ss_pred CccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
+...|-.|-.... ..+.-.-|.+|..|+..++ .....||+|..++...
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL-----------~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLL-----------SVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTC-----------SSSSEETTTTEECCCC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHH-----------hhccCCcccCCcCCcc
Confidence 3467888875433 3555567999999999883 6677999999987554
No 125
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.53 E-value=0.53 Score=45.46 Aligned_cols=54 Identities=2% Similarity=-0.028 Sum_probs=48.0
Q ss_pred CCCcEEEEcchHHHHHHHHHHHHhC--CceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 139 PKAKILVFSSWNDVLDVLEHAFIAN--NITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 139 ~~~K~iVFSQf~~~L~li~~~L~~~--gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
.+.+++||......++.+...|... |++...++|.|+ ..+|.++++.|.++..+
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~------~~eR~~il~~F~~g~~~ 866 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR------ERELERVMNDFHHQRFN 866 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCC------HHHHHHHHHHHHTTSCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCC------HHHHHHHHHHHHcCCCc
Confidence 4789999999999999999999987 899999999987 99999999999975443
No 126
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.94 E-value=0.57 Score=43.24 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHh-----------CCceEEEeeCCCCCCcchhhHhhhHHH
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIA-----------NNITCIKMKGENHKLPSANLQHRNALQ 189 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~-----------~gi~~~~~~G~m~~~~~~~~~~R~~~l 189 (210)
..+++++++.+..+....+..++|||..-....+.+...|.. .|+....+.|+|+ ..+|.+++
T Consensus 284 ~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~------~~eR~~v~ 357 (773)
T 2xau_A 284 RDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLP------PHQQQRIF 357 (773)
T ss_dssp SCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCC------HHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCC------HHHHHHHH
Confidence 456777777877776666788999999999888888888875 7899999999977 99999999
Q ss_pred HHHh
Q 028376 190 KELT 193 (210)
Q Consensus 190 ~~F~ 193 (210)
+.|.
T Consensus 358 ~~f~ 361 (773)
T 2xau_A 358 EPAP 361 (773)
T ss_dssp SCCC
T ss_pred hhcc
Confidence 9997
No 127
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=88.85 E-value=1.8 Score=29.80 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=44.0
Q ss_pred EEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 143 ILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 143 ~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
.+|||+-+..|.-|-...+..|++.+.+..... .+.|..-|++|.+..-+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqd------ekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQD------EKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSC------HHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCch------HHHHHHHHHHHHHcCCc
Confidence 489999999999999999999999998888755 89999999999975444
No 128
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=87.59 E-value=0.91 Score=37.99 Aligned_cols=60 Identities=10% Similarity=0.028 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEE-EeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCI-KMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~-~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
..|.+.|.+.|... +.++|||.......+.+...|...|+... .++|. +|. ++.|+++..
T Consensus 238 ~~~~~~l~~~l~~~-----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----------~r~--~~~f~~g~~ 298 (414)
T 3oiy_A 238 SRSKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----------EKN--FEDFKVGKI 298 (414)
T ss_dssp SCCHHHHHHHHHHH-----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----------HHH--HHHHHTTSC
T ss_pred cCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----------chH--HHHHhCCCC
Confidence 36788887777651 47999999999999999999999999987 77773 444 999998543
No 129
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=82.71 E-value=2.9 Score=39.70 Aligned_cols=66 Identities=6% Similarity=-0.039 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCc------------------------------------
Q 028376 122 TKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNI------------------------------------ 165 (210)
Q Consensus 122 sKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi------------------------------------ 165 (210)
.++.+|++.|.. .+..++|||..-....+.+...|...|+
T Consensus 322 ~~~~~li~~l~~----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 397 (997)
T 4a4z_A 322 KTWPEIVNYLRK----RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSL 397 (997)
T ss_dssp THHHHHHHHHHH----TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHH
Confidence 456677766653 4568999999999999988888877666
Q ss_pred ---eEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 166 ---TCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 166 ---~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
+...++|+|+ ...|..+++.|..+.-
T Consensus 398 l~~gi~~~H~gl~------~~~R~~v~~~F~~G~~ 426 (997)
T 4a4z_A 398 LERGIAVHHGGLL------PIVKELIEILFSKGFI 426 (997)
T ss_dssp HTTTEEEECTTSC------HHHHHHHHHHHHTTCC
T ss_pred hhcCeeeecCCCC------HHHHHHHHHHHHCCCC
Confidence 3577899977 9999999999998543
No 130
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=82.48 E-value=0.088 Score=35.37 Aligned_cols=40 Identities=33% Similarity=0.699 Sum_probs=28.5
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccccc
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 81 (210)
..||.|..++... =++.+|..|-..+ .....||.|..++.
T Consensus 33 ~~CP~Cq~eL~~~-----g~~~hC~~C~~~f------------~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD-----NGHARCRSCGEFI------------EMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE-----TTEEEETTTCCEE------------EEEEECTTTCSBCE
T ss_pred ccCccCCCcceec-----CCEEECccccchh------------hccccCcchhhHHH
Confidence 7899999877532 1455688886654 45568999988764
No 131
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=82.19 E-value=3.2 Score=27.98 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=30.1
Q ss_pred CCcEEEEcc------hHHHHHHHHHHHHhCCceEEEeeCC
Q 028376 140 KAKILVFSS------WNDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 140 ~~K~iVFSQ------f~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
..+++||+. |-.+-..+...|...||.|..++=.
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~ 56 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNIL 56 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGG
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECC
Confidence 569999998 8899999999999999999888654
No 132
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=81.73 E-value=1.4 Score=30.60 Aligned_cols=47 Identities=21% Similarity=0.411 Sum_probs=35.7
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCC
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGN 84 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 84 (210)
+.|..|..++........=|..||..|..+. ..+.|..|+.++...+
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~-------------~~~~C~~C~~~I~~~~ 77 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKN-------------HAVVCQGCHNAIDPEV 77 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEEEEHHHHHHH-------------SCCBCTTTCSBCCTTS
T ss_pred CCcCCCCCCCCcCEEEeECCEEechHHhCcC-------------cCccCcccCCcCCcCc
Confidence 5677788877654456677899999999875 2358999999998643
No 133
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=80.78 E-value=1.5 Score=36.78 Aligned_cols=54 Identities=22% Similarity=0.554 Sum_probs=38.5
Q ss_pred ccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 26 TCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 26 ~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
.||+=...+..+..-..|.|+-|.+-. .+++... ....-.||+|.+.+...+|.
T Consensus 251 ~CPlS~~ri~~PvRg~~C~HlQCFDl~-sfL~~~~------~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 251 QCPISYTRMKYPSKSINCKHLQCFDAL-WFLHSQL------QIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp BCTTTSSBCSSEEEETTCCSSCCEEHH-HHHHHHH------HSCCCBCTTTCCBCCGGGEE
T ss_pred cCCCccccccccCcCCcCCCcceECHH-HHHHHhh------cCCceeCCCCCcccCHHHee
Confidence 488888778776666899999775542 3333222 24567899999999888876
No 134
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=80.39 E-value=1.2 Score=27.11 Aligned_cols=41 Identities=27% Similarity=0.645 Sum_probs=30.1
Q ss_pred cccccccccccCCC--eecCCCCcchHhhHHHHHHHhhhccccCCCccccccCC
Q 028376 25 ETCPICQEKLGNQK--MVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTC 76 (210)
Q Consensus 25 ~~C~iC~~~~~~~~--~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~C 76 (210)
..|..|...+.+.. .-..|++.||.+|=.=+ ...-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fi-----------He~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFV-----------HDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTT-----------TTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHH-----------HhhccCCcCC
Confidence 46999998885432 23689999999996533 3556689988
No 135
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=80.18 E-value=2.5 Score=27.91 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=34.6
Q ss_pred CCcEEEEcc-hHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHH
Q 028376 140 KAKILVFSS-WNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKE 191 (210)
Q Consensus 140 ~~K~iVFSQ-f~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~ 191 (210)
+.+++|||. |-.+-..+...|+++||+|..++=... ...|+..++.
T Consensus 3 ta~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d------~~~~~~~~~~ 49 (92)
T 2lqo_A 3 TAALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHN------RAAAEFVGSV 49 (92)
T ss_dssp SSCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTC------HHHHHHHHHH
T ss_pred CCcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCC------HHHHHHHHHH
Confidence 468899986 667777788999999999998887644 5556554443
No 136
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=79.31 E-value=4.7 Score=27.36 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=30.0
Q ss_pred CCcEEEEc------chHHHHHHHHHHHHhCCceEEEeeCC
Q 028376 140 KAKILVFS------SWNDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 140 ~~K~iVFS------Qf~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
..+++||| .|-.+-..+...|+.+||.|..++=.
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~ 54 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIF 54 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGG
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECc
Confidence 57999999 58889999999999999999888765
No 137
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=78.55 E-value=1.9 Score=35.96 Aligned_cols=54 Identities=19% Similarity=0.473 Sum_probs=38.2
Q ss_pred ccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 26 TCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 26 ~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
.||+=...+..+..-..|.|.-|-+-. .+++... ....-.||+|.+.+...+|.
T Consensus 217 ~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~~~------~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 217 MCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQMNE------KKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp BCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHHHH------HSCCCBCTTTCSBCCGGGEE
T ss_pred eCCCccceeccCCcCCCCCCCccCCHH-HHHHHHh------hCCCeECCCCCcccCHHHeE
Confidence 488888878776666899999665433 2333222 14566899999999988876
No 138
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=78.02 E-value=5.6 Score=37.82 Aligned_cols=65 Identities=9% Similarity=-0.006 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCce-----------------------------------
Q 028376 122 TKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNIT----------------------------------- 166 (210)
Q Consensus 122 sKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~----------------------------------- 166 (210)
.++..|++.+.. .+..++|||.......+.+...|...|+.
T Consensus 329 ~~l~~l~~~l~~----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 404 (1010)
T 2xgj_A 329 GDIYKIVKMIWK----KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPL 404 (1010)
T ss_dssp CHHHHHHHHHHH----HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh----cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHH
Confidence 345555555543 23569999999999999888888765542
Q ss_pred ----EEEeeCCCCCCcchhhHhhhHHHHHHhhcC
Q 028376 167 ----CIKMKGENHKLPSANLQHRNALQKELTRHM 196 (210)
Q Consensus 167 ----~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~ 196 (210)
...++|+|+ ...|..+++.|.++.
T Consensus 405 l~~gI~~~Hggl~------~~eR~~ve~~F~~G~ 432 (1010)
T 2xgj_A 405 LRRGIGIHHSGLL------PILKEVIEILFQEGF 432 (1010)
T ss_dssp HHHTEEEESTTSC------HHHHHHHHHHHHTTC
T ss_pred HhCCeeEECCCCC------HHHHHHHHHHHhcCC
Confidence 456899977 999999999999743
No 139
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=76.41 E-value=3.1 Score=27.49 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=32.8
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCC
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGN 84 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 84 (210)
+.|..|..++........=|.+||..|..+. ..+.|..|..++...+
T Consensus 34 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~-------------~~~~C~~C~~~I~~~~ 80 (101)
T 2cup_A 34 FRCAKCLHPLANETFVAKDNKILCNKCTTRE-------------DSPKCKGCFKAIVAGD 80 (101)
T ss_dssp CCCSSSCCCTTSSCCEEETTEEECHHHHTTC-------------CCCBCSSSCCBCCSSS
T ss_pred CcccccCCCCCcCeeECcCCEEEChhHhhhh-------------cCCccccCCCccccCC
Confidence 4567777777554455667888898887643 3468999999887543
No 140
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=75.94 E-value=1.4 Score=27.27 Aligned_cols=33 Identities=27% Similarity=0.595 Sum_probs=25.4
Q ss_pred CCCccccccccccccCCCeecCC-CCcchHhhHHHH
Q 028376 21 KADEETCPICQEKLGNQKMVFQC-GHFTCCKCFFAM 55 (210)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~~~~~C-gH~fC~~C~~~~ 55 (210)
+.+..-|.||.+... ..-..| |-+||..|+.+.
T Consensus 5 ~ee~pWC~ICneDAt--lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT--LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSCCC--EEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCCCe--EEecCCCCceehHHHHHHH
Confidence 345567999998633 355788 899999999987
No 141
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=75.53 E-value=4.2 Score=36.39 Aligned_cols=48 Identities=6% Similarity=-0.035 Sum_probs=42.9
Q ss_pred CCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 140 KAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 140 ~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
..++|||..-....+.+...|...|+....++|. +|.++++.|.++..
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----------~R~~~l~~F~~g~~ 402 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----------TFDTEYPKTKLTDW 402 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----------THHHHTTHHHHSCC
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----------HHHHHHHhhcCCCc
Confidence 5699999999999999999999999999999885 78889999987543
No 142
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=74.54 E-value=8.5 Score=25.38 Aligned_cols=45 Identities=9% Similarity=0.128 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCcEEEEc------chHHHHHHHHHHHHhCCceEEEeeCCC
Q 028376 127 VTRRILWIKSTDPKAKILVFS------SWNDVLDVLEHAFIANNITCIKMKGEN 174 (210)
Q Consensus 127 l~~~L~~~~~~~~~~K~iVFS------Qf~~~L~li~~~L~~~gi~~~~~~G~m 174 (210)
+.+.+.++.. ..+++||+ .|-..-..+...|...||.|..++=..
T Consensus 6 ~~~~~~~~i~---~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~ 56 (105)
T 2yan_A 6 LEERLKVLTN---KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE 56 (105)
T ss_dssp HHHHHHHHHT---SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGG
T ss_pred HHHHHHHHhc---cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCC
Confidence 3344444443 34799998 588888999999999999998887763
No 143
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=74.26 E-value=14 Score=25.41 Aligned_cols=34 Identities=6% Similarity=-0.054 Sum_probs=29.5
Q ss_pred CCcEEEEcc------hHHHHHHHHHHHHhCCce---EEEeeCC
Q 028376 140 KAKILVFSS------WNDVLDVLEHAFIANNIT---CIKMKGE 173 (210)
Q Consensus 140 ~~K~iVFSQ------f~~~L~li~~~L~~~gi~---~~~~~G~ 173 (210)
..+++|||. |-.+-..+...|+..||. |..++=.
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~ 57 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVL 57 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECT
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEec
Confidence 568999998 788999999999999999 8777655
No 144
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=73.36 E-value=17 Score=32.63 Aligned_cols=52 Identities=8% Similarity=0.075 Sum_probs=42.4
Q ss_pred CCCcEEEEcchHHHHHHHHHHHHhCC------------------------------------ceEEEeeCCCCCCcchhh
Q 028376 139 PKAKILVFSSWNDVLDVLEHAFIANN------------------------------------ITCIKMKGENHKLPSANL 182 (210)
Q Consensus 139 ~~~K~iVFSQf~~~L~li~~~L~~~g------------------------------------i~~~~~~G~m~~~~~~~~ 182 (210)
++.++|||..-....+.+...|.... .....++|+|+ .
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~------~ 324 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLS------K 324 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSC------H
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCC------H
Confidence 46899999999998888888887642 23566899977 9
Q ss_pred HhhhHHHHHHhhcC
Q 028376 183 QHRNALQKELTRHM 196 (210)
Q Consensus 183 ~~R~~~l~~F~~~~ 196 (210)
.+|..+.+.|..+.
T Consensus 325 ~~r~~v~~~f~~g~ 338 (715)
T 2va8_A 325 ALRDLIEEGFRQRK 338 (715)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999753
No 145
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=72.97 E-value=5 Score=38.59 Aligned_cols=54 Identities=7% Similarity=-0.048 Sum_probs=42.9
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCce---------------------------------------EEEeeCCCCCCc
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNIT---------------------------------------CIKMKGENHKLP 178 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~---------------------------------------~~~~~G~m~~~~ 178 (210)
.+..++|||..-....+.+...|...|+. ...++|+|+
T Consensus 439 ~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~--- 515 (1108)
T 3l9o_A 439 KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLL--- 515 (1108)
T ss_dssp TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSC---
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCC---
Confidence 45779999999998888888777554333 466899977
Q ss_pred chhhHhhhHHHHHHhhcCC
Q 028376 179 SANLQHRNALQKELTRHMP 197 (210)
Q Consensus 179 ~~~~~~R~~~l~~F~~~~p 197 (210)
..+|..+++.|..+..
T Consensus 516 ---~~~R~~v~~~F~~G~i 531 (1108)
T 3l9o_A 516 ---PILKEVIEILFQEGFL 531 (1108)
T ss_dssp ---HHHHHHHHHHHHHTCC
T ss_pred ---HHHHHHHHHHHhCCCC
Confidence 9999999999997543
No 146
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=72.79 E-value=8.2 Score=34.99 Aligned_cols=46 Identities=7% Similarity=-0.010 Sum_probs=40.2
Q ss_pred EEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 143 ILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 143 ~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
.|||..-..-.+.+...|...|+....++|+|+ ..+|..+++.|+.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~------~~~R~~~~~~F~~ 368 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLP------PGTKLAQAKKFND 368 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSC------HHHHHHHHHHHHC
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCC------HHHHHHHHHHHHc
Confidence 355555577789999999999999999999977 9999999999997
No 147
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=71.75 E-value=2.6 Score=27.37 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=25.4
Q ss_pred CCCCccccccccccccCC---CeecCCCCcchHhhHHH
Q 028376 20 SKADEETCPICQEKLGNQ---KMVFQCGHFTCCKCFFA 54 (210)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~---~~~~~CgH~fC~~C~~~ 54 (210)
.+.+...|.+|...+..- -.--.||++||..|...
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 355667899998887531 12358999999999764
No 148
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=71.59 E-value=5.2 Score=34.09 Aligned_cols=48 Identities=6% Similarity=-0.035 Sum_probs=41.1
Q ss_pred CCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 140 KAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 140 ~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
..++|||..-....+.+...|...|+....++|. .|.++++.|.++..
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~----------~~~~~~~~f~~g~~ 235 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----------TFDTEYPKTKLTDW 235 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTT----------THHHHGGGGGSSCC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHH----------HHHHHHHhhccCCc
Confidence 4599999999999999999999999999988887 33578999987543
No 149
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=71.35 E-value=2.4 Score=27.37 Aligned_cols=35 Identities=20% Similarity=0.589 Sum_probs=25.3
Q ss_pred CCCCccccccccccccCC---CeecCCCCcchHhhHHH
Q 028376 20 SKADEETCPICQEKLGNQ---KMVFQCGHFTCCKCFFA 54 (210)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~---~~~~~CgH~fC~~C~~~ 54 (210)
.+.+...|.+|...+..- -.--.||.+||..|...
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 355667899998877531 12358999999999764
No 150
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=71.06 E-value=1.9 Score=30.30 Aligned_cols=32 Identities=22% Similarity=0.607 Sum_probs=23.2
Q ss_pred CccccccccccccCC---CeecCCCCcchHhhHHH
Q 028376 23 DEETCPICQEKLGNQ---KMVFQCGHFTCCKCFFA 54 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~---~~~~~CgH~fC~~C~~~ 54 (210)
+...|.+|...+..- -.--.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 446799998877531 13358999999999654
No 151
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=70.76 E-value=4.6 Score=34.37 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=35.3
Q ss_pred CCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 140 KAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 140 ~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
+.++|||..-....+.+...|...|++...++|. +|.++++.|.++..
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~----------~R~~~~~~F~~g~~ 224 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK----------TFEREYPTIKQKKP 224 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS----------SCC--------CCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch----------hHHHHHhhhcCCCc
Confidence 5799999999999999999999999999999984 68899999998543
No 152
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.68 E-value=2.6 Score=27.29 Aligned_cols=36 Identities=17% Similarity=0.456 Sum_probs=25.4
Q ss_pred cCCCCccccccccccccCC---CeecCCCCcchHhhHHH
Q 028376 19 LSKADEETCPICQEKLGNQ---KMVFQCGHFTCCKCFFA 54 (210)
Q Consensus 19 l~~~~~~~C~iC~~~~~~~---~~~~~CgH~fC~~C~~~ 54 (210)
+.+.+...|.+|...+..- -.--.||.+||..|...
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred ccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3456667899998887431 12258999999999653
No 153
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=70.53 E-value=6.8 Score=33.15 Aligned_cols=49 Identities=2% Similarity=-0.090 Sum_probs=42.8
Q ss_pred CCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 140 KAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 140 ~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
..++|||..-....+.+...|...|++...++|. +|.++++.|.++..+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----------~r~~~~~~f~~g~~~ 219 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----------TFESEYPKCKSEKWD 219 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----------THHHHTTHHHHSCCS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----------cHHHHHHhhcCCCCe
Confidence 5599999999999999999999999999999986 577899999985443
No 154
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=69.54 E-value=14 Score=25.26 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=30.3
Q ss_pred CCcEEEEcc------hHHHHHHHHHHHHhCCce-EEEeeCCC
Q 028376 140 KAKILVFSS------WNDVLDVLEHAFIANNIT-CIKMKGEN 174 (210)
Q Consensus 140 ~~K~iVFSQ------f~~~L~li~~~L~~~gi~-~~~~~G~m 174 (210)
..+++|||. |-.+-..+...|+..||+ |..++=..
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~ 60 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD 60 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSS
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCC
Confidence 458999999 899999999999999996 98887653
No 155
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=69.27 E-value=2.2 Score=29.53 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=35.5
Q ss_pred cccccccccccC--CCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCe
Q 028376 25 ETCPICQEKLGN--QKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNI 85 (210)
Q Consensus 25 ~~C~iC~~~~~~--~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 85 (210)
+.|..|..++.+ ......=|.+||..|..+.+ .....|..|..+|....+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f-----------~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF-----------GNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHH-----------CCCCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHc-----------CCCCccccCCCCcCchhe
Confidence 457778777752 23556778899999998864 222379999999887654
No 156
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=69.23 E-value=9.8 Score=34.26 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=40.3
Q ss_pred CCCcEEEEcchHHHHHHHHHHHHhC--------------------------------CceEEEeeCCCCCCcchhhHhhh
Q 028376 139 PKAKILVFSSWNDVLDVLEHAFIAN--------------------------------NITCIKMKGENHKLPSANLQHRN 186 (210)
Q Consensus 139 ~~~K~iVFSQf~~~L~li~~~L~~~--------------------------------gi~~~~~~G~m~~~~~~~~~~R~ 186 (210)
++.++|||..-....+.+...|... |+. .+.|+|+ ..+|.
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~--~~h~~l~------~~~R~ 312 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAA--FHHAGLL------NGQRR 312 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCC--EECTTSC------HHHHH
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeE--EecCCCC------HHHHH
Confidence 4689999999988888877777642 454 4899977 99999
Q ss_pred HHHHHHhhcC
Q 028376 187 ALQKELTRHM 196 (210)
Q Consensus 187 ~~l~~F~~~~ 196 (210)
.+.+.|..+.
T Consensus 313 ~v~~~f~~g~ 322 (702)
T 2p6r_A 313 VVEDAFRRGN 322 (702)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHCCC
Confidence 9999999753
No 157
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=68.83 E-value=5.8 Score=35.91 Aligned_cols=50 Identities=6% Similarity=-0.006 Sum_probs=44.2
Q ss_pred CCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 139 PKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 139 ~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
...++|||..-....+.+...|...|+....++|. +|.++++.|.++..+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----------eR~~v~~~F~~g~~~ 458 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----------SYDTEYPKCKNGDWD 458 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----------SHHHHGGGGGTCCCS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----------HHHHHHHHHHCCCce
Confidence 46799999999999999999999999999999984 788999999975443
No 158
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=68.51 E-value=5.6 Score=27.58 Aligned_cols=49 Identities=18% Similarity=0.584 Sum_probs=35.5
Q ss_pred cccccccccccC--CCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCC
Q 028376 25 ETCPICQEKLGN--QKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGN 84 (210)
Q Consensus 25 ~~C~iC~~~~~~--~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 84 (210)
+.|..|..++.. ......=|..||..|..+.+ +....|..|..++...+
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~-----------~~~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF-----------GQDGLCASCDKRIRAYE 80 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHH-----------CCCEECTTTCCEECTTS
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhC-----------CCccChhhcCCccCccc
Confidence 567778777752 24566778999999998763 22238999999987654
No 159
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=68.22 E-value=11 Score=25.17 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=29.5
Q ss_pred CCcEEEEcc------hHHHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 140 KAKILVFSS------WNDVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 140 ~~K~iVFSQ------f~~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
..+++||+. |-.+-..+...|+..||.|..++=...
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~ 55 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED 55 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSC
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCC
Confidence 457999987 666777888999999999999987744
No 160
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=67.78 E-value=2.6 Score=27.75 Aligned_cols=34 Identities=24% Similarity=0.484 Sum_probs=24.3
Q ss_pred CCccccccccccccCC---CeecCCCCcchHhhHHHH
Q 028376 22 ADEETCPICQEKLGNQ---KMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~---~~~~~CgH~fC~~C~~~~ 55 (210)
.+...|.+|...+..- -.--.||++||..|....
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 3456799998877531 133689999999997643
No 161
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=67.64 E-value=5.4 Score=29.16 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=35.4
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
+.|..|...+.... ...=|..||..|..+.+ ...|..|..++...+++
T Consensus 34 F~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f-------------~~~C~~C~~~I~~~~~v 81 (169)
T 2rgt_A 34 LKCSDCHVPLAERC-FSRGESVYCKDDFFKRF-------------GTKCAACQLGIPPTQVV 81 (169)
T ss_dssp SBCTTTCCBCCSCC-EESSSCEECHHHHHHHH-------------SCBCTTTCCBCCTTSEE
T ss_pred CccCCCCCcCCCCC-cccCCeeeecccccccc-------------cccccccccccCCCcEE
Confidence 56777877776643 45678999999998764 24799999988776543
No 162
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=67.20 E-value=0.41 Score=31.13 Aligned_cols=40 Identities=30% Similarity=0.689 Sum_probs=22.1
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccccc
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 81 (210)
..||.|..++..... +..|..|-..+ .....||.|+.++.
T Consensus 3 ~~CP~C~~~l~~~~~-----~~~C~~C~~~~------------~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-----TAHCETCAKDF------------SLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS-----EEECTTTCCEE------------EEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC-----ceECccccccC------------CCcccCcchhhHHH
Confidence 578888876653222 33455564433 22236777766653
No 163
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=66.60 E-value=19 Score=25.34 Aligned_cols=34 Identities=12% Similarity=-0.041 Sum_probs=29.7
Q ss_pred CcEEEEcc------hHHHHHHHHHHHHhCCceEEEeeCCC
Q 028376 141 AKILVFSS------WNDVLDVLEHAFIANNITCIKMKGEN 174 (210)
Q Consensus 141 ~K~iVFSQ------f~~~L~li~~~L~~~gi~~~~~~G~m 174 (210)
.+++||+. |-.+-..+...|+..||.|..++=..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~ 74 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ 74 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC
Confidence 58999987 88899999999999999998887653
No 164
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=65.98 E-value=4.8 Score=37.94 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=42.5
Q ss_pred CCccccccccccccCCCeecCCC-CcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeE
Q 028376 22 ADEETCPICQEKLGNQKMVFQCG-HFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIA 86 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~Cg-H~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 86 (210)
-+.+.|||-.+.+.+ |++++-| +.|=+.++.+|+. ....||.=|.++...+++
T Consensus 889 P~~F~cPIs~~lM~D-PVilpsG~~TydR~~I~~wl~-----------~~~tdP~Tr~~L~~~~li 942 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD-PVILPASKMNIDRSTIKAHLL-----------SDSTDPFNRMPLKLEDVT 942 (968)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHT-----------TCCBCTTTCCBCCGGGCE
T ss_pred cHHhCCcchhhHHhC-CeEcCCCCEEECHHHHHHHHh-----------cCCCCCCCCCCCCccccc
Confidence 356779999999988 4999998 5899999999973 245899999888766543
No 165
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.95 E-value=3.7 Score=26.92 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=23.8
Q ss_pred CCccccccccccccCC---CeecCCCCcchHhhHHH
Q 028376 22 ADEETCPICQEKLGNQ---KMVFQCGHFTCCKCFFA 54 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~---~~~~~CgH~fC~~C~~~ 54 (210)
.+...|.+|...+..- -.--.||++||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3456899998877531 12258999999999764
No 166
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=65.30 E-value=3.1 Score=35.61 Aligned_cols=48 Identities=6% Similarity=-0.020 Sum_probs=41.8
Q ss_pred CCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 140 KAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 140 ~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
..|+|||..-....+.+...|...|+....+.|. +|.++++.|.++..
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----------~R~~~~~~f~~g~~ 237 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----------SYDTEYPKCKNGDW 237 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----------CCCCCGGGSSSCCC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----------HHHHHHhhccCCCc
Confidence 5699999999999999999999999999988885 67788888987543
No 167
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=65.08 E-value=3.3 Score=38.26 Aligned_cols=71 Identities=6% Similarity=-0.060 Sum_probs=48.9
Q ss_pred CCchHHHHHHHHHHHHhcCCCCcEEEEcchH--------HHHHHHHHHHHh---CCceEEEeeCCCCCCcchhhHhhhHH
Q 028376 120 YGTKIEAVTRRILWIKSTDPKAKILVFSSWN--------DVLDVLEHAFIA---NNITCIKMKGENHKLPSANLQHRNAL 188 (210)
Q Consensus 120 ~SsKi~al~~~L~~~~~~~~~~K~iVFSQf~--------~~L~li~~~L~~---~gi~~~~~~G~m~~~~~~~~~~R~~~ 188 (210)
...+...+++.+.+.. ..+.+++||.... .....+...|.. .|++...++|+|+ ..+|.++
T Consensus 560 ~~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~------~~eR~~v 631 (780)
T 1gm5_A 560 PMDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLS------QEEKDRV 631 (780)
T ss_dssp CSSTHHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSC------CSCSHHH
T ss_pred ccchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCC------HHHHHHH
Confidence 3456677777776544 3467899988643 224455566766 5788889999977 9999999
Q ss_pred HHHHhhcCCC
Q 028376 189 QKELTRHMPS 198 (210)
Q Consensus 189 l~~F~~~~p~ 198 (210)
++.|.++..+
T Consensus 632 ~~~F~~G~~~ 641 (780)
T 1gm5_A 632 MLEFAEGRYD 641 (780)
T ss_dssp HHHHTTTSSS
T ss_pred HHHHHCCCCe
Confidence 9999985544
No 168
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=64.78 E-value=0.66 Score=38.04 Aligned_cols=52 Identities=21% Similarity=0.547 Sum_probs=36.5
Q ss_pred CCccccccccccccCCCeec----CCC--CcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCeEEc
Q 028376 22 ADEETCPICQEKLGNQKMVF----QCG--HFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNIAYA 88 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~----~Cg--H~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~ 88 (210)
.....||+|...+... ++. .=| |..|.-|-..| ...+..||.|... .++.|.
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W-----------~~~R~~C~~Cg~~---~~l~y~ 237 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEW-----------HYVRIKCSHCEES---KHLAYL 237 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEE-----------ECCTTSCSSSCCC---SCCEEE
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEE-----------eecCcCCcCCCCC---CCeeEE
Confidence 4457899998877543 332 234 68899999888 4678899999886 344443
No 169
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=63.83 E-value=7.3 Score=24.14 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=30.9
Q ss_pred cccccccccccCCCeecCCCCcchH-hhHHHHHHHhhhccccCCCccccccCCcccc
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCC-KCFFAMTEQRLIHDNKVKNEWVMCPTCRQRT 80 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~-~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 80 (210)
+.|..|..++........=|.+||. .|..+.+ .+.|..|...+
T Consensus 28 F~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f-------------~~~C~~C~~~~ 71 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF-------------GPKGFGRGGAE 71 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS-------------SCCCSSCCCSS
T ss_pred CCccccCccCCCCceECcCCeEeeCHHHHHHHh-------------CccCCCcCCce
Confidence 5678888887765566677899999 6997652 34688887543
No 170
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.91 E-value=7.8 Score=23.63 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=24.0
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTE 57 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~ 57 (210)
+.|..|...+........=|.+||..|..+.++
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 457777777755446667788999999988763
No 171
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=60.11 E-value=4.9 Score=30.01 Aligned_cols=49 Identities=20% Similarity=0.474 Sum_probs=31.9
Q ss_pred cccccccccccC--CCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCC
Q 028376 25 ETCPICQEKLGN--QKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGN 84 (210)
Q Consensus 25 ~~C~iC~~~~~~--~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 84 (210)
+.|..|...+.. ......=|..||..|..+.+ .....|..|..++...+
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~-----------~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF-----------GNSGACSACGQSIPASE 83 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHH-----------SCCEECTTTCCEECTTS
T ss_pred cccCCCCcccccCCceEEEeCCcccccccccccc-----------ccCCccccCCCccccCc
Confidence 456677766653 23555678899999988764 11126888888776544
No 172
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=58.66 E-value=16 Score=32.97 Aligned_cols=52 Identities=8% Similarity=0.107 Sum_probs=41.1
Q ss_pred CCCcEEEEcchHHHHHHHHHHHHhC------------------Cc---------------eEEEeeCCCCCCcchhhHhh
Q 028376 139 PKAKILVFSSWNDVLDVLEHAFIAN------------------NI---------------TCIKMKGENHKLPSANLQHR 185 (210)
Q Consensus 139 ~~~K~iVFSQf~~~L~li~~~L~~~------------------gi---------------~~~~~~G~m~~~~~~~~~~R 185 (210)
++.++|||..-....+.+...|... ++ +...+.|+|+ ..+|
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~------~~~R 309 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLG------RDER 309 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSC------HHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCC------HHHH
Confidence 3689999999888888888777643 11 3566889977 9999
Q ss_pred hHHHHHHhhcC
Q 028376 186 NALQKELTRHM 196 (210)
Q Consensus 186 ~~~l~~F~~~~ 196 (210)
..+.+.|..+.
T Consensus 310 ~~v~~~f~~g~ 320 (720)
T 2zj8_A 310 VLVEENFRKGI 320 (720)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHCCC
Confidence 99999999753
No 173
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=58.41 E-value=13 Score=23.77 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=31.5
Q ss_pred cEEEEcc-hHHHH------HHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHH
Q 028376 142 KILVFSS-WNDVL------DVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKEL 192 (210)
Q Consensus 142 K~iVFSQ-f~~~L------~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F 192 (210)
|++||+. |-.+- ..+...|+.+||.|..+|=... ...|....+..
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~------~~~~~~l~~~~ 54 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQD------NALRDEMRTLA 54 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSC------HHHHHHHHHHT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCC------HHHHHHHHHHh
Confidence 6778876 44555 6778889999999998888754 55555444443
No 174
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=58.24 E-value=11 Score=28.10 Aligned_cols=32 Identities=16% Similarity=0.461 Sum_probs=24.5
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAMT 56 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~ 56 (210)
+.|..|...+........=|.+||..|..+.+
T Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f 66 (192)
T 1b8t_A 35 FLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKY 66 (192)
T ss_dssp CBCTTTCCBCCSSSEEEETTEEEEHHHHHHHH
T ss_pred CcCcccCCcCCCCeeEecCCEeeChhhhHhhc
Confidence 56777877777654556678899999999875
No 175
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=57.29 E-value=4.5 Score=28.26 Aligned_cols=36 Identities=19% Similarity=0.516 Sum_probs=22.9
Q ss_pred CCCCccccccccccccCC---CeecCCCCcchHhhHHHH
Q 028376 20 SKADEETCPICQEKLGNQ---KMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~---~~~~~CgH~fC~~C~~~~ 55 (210)
-+.+...|..|...+..- -.--.||.+||..|....
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCC
Confidence 345567899998877531 133689999999997654
No 176
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=56.79 E-value=1.4 Score=26.82 Aligned_cols=33 Identities=24% Similarity=0.594 Sum_probs=21.4
Q ss_pred CccccccccccccCCC----ee-cC--CCCcchHhhHHHH
Q 028376 23 DEETCPICQEKLGNQK----MV-FQ--CGHFTCCKCFFAM 55 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~----~~-~~--CgH~fC~~C~~~~ 55 (210)
....||.|...++... +. .. |++.||..|...|
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 3468999988776421 12 22 7777777777666
No 177
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=56.79 E-value=13 Score=25.90 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHh
Q 028376 154 DVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELT 193 (210)
Q Consensus 154 ~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~ 193 (210)
..+...|+..||.|..+|=++. ...|....++..
T Consensus 20 ~~aK~lL~~kgV~feEidI~~d------~~~r~eM~~~~~ 53 (121)
T 1u6t_A 20 QDVLGFLEANKIGFEEKDIAAN------EENRKWMRENVP 53 (121)
T ss_dssp HHHHHHHHHTTCCEEEEECTTC------HHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCceEEEECCCC------HHHHHHHHHhcc
Confidence 5678889999999999999866 899999998873
No 178
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=56.56 E-value=7 Score=24.46 Aligned_cols=29 Identities=24% Similarity=0.513 Sum_probs=21.5
Q ss_pred cccccccccccCC---CeecCCCCcchHhhHH
Q 028376 25 ETCPICQEKLGNQ---KMVFQCGHFTCCKCFF 53 (210)
Q Consensus 25 ~~C~iC~~~~~~~---~~~~~CgH~fC~~C~~ 53 (210)
..|.+|...+..- -.--.||++||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 5899998877531 1225899999999965
No 179
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.18 E-value=6.8 Score=23.80 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=21.7
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAMT 56 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~ 56 (210)
+.|..|...+........-|.+||..|..+.+
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 45677777666544445667788888887664
No 180
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=56.08 E-value=21 Score=23.85 Aligned_cols=34 Identities=12% Similarity=0.369 Sum_probs=29.0
Q ss_pred CCcEEEEcc-hHHHHHHHHHHHHhCCceEEEeeCC
Q 028376 140 KAKILVFSS-WNDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 140 ~~K~iVFSQ-f~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
..+++||+. |-.+-..+...|...|+.|..++=.
T Consensus 16 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~~~~~dvd 50 (114)
T 3h8q_A 16 RSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELD 50 (114)
T ss_dssp HCSEEEEECTTCHHHHHHHHHHHHTTCCCEEEETT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHcCCCcEEEEec
Confidence 458999995 8888899999999999999888765
No 181
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=56.07 E-value=29 Score=22.55 Aligned_cols=50 Identities=8% Similarity=0.058 Sum_probs=33.5
Q ss_pred CCcEEEEc-chHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 140 KAKILVFS-SWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 140 ~~K~iVFS-Qf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
..+++||+ .|-..-..+...|++.|+.|..++=.. .+...+....+.+..
T Consensus 21 ~~~v~ly~~~~Cp~C~~ak~~L~~~~i~y~~vdI~~-----~~~~~~~~~~~~l~~ 71 (103)
T 3nzn_A 21 RGKVIMYGLSTCVWCKKTKKLLTDLGVDFDYVYVDR-----LEGKEEEEAVEEVRR 71 (103)
T ss_dssp CSCEEEEECSSCHHHHHHHHHHHHHTBCEEEEEGGG-----CCHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCCcEEEEeec-----cCcccHHHHHHHHHH
Confidence 45777876 478888888888888888887665432 114456666665553
No 182
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=55.93 E-value=18 Score=34.80 Aligned_cols=60 Identities=8% Similarity=0.019 Sum_probs=48.2
Q ss_pred chHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEE-EeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 122 TKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCI-KMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 122 sKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~-~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
.|...|.+.|... +.++|||..-....+.+...|...|++.. .++| +|.+ ++.|.++.-+
T Consensus 296 ~k~~~L~~ll~~~-----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----------~rr~-l~~F~~G~~~ 356 (1104)
T 4ddu_A 296 RSKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----------FEKN-FEDFKVGKIN 356 (1104)
T ss_dssp CCHHHHHHHHHHH-----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----------HHHH-HHHHHHTSCS
T ss_pred CHHHHHHHHHHhc-----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----------cHHH-HHHHHCCCCC
Confidence 5778887777652 37999999999999999999999999987 7776 2444 9999985433
No 183
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=55.80 E-value=8.3 Score=28.50 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=26.2
Q ss_pred ccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCC
Q 028376 26 TCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGN 84 (210)
Q Consensus 26 ~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 84 (210)
.|..|..++.... ...=|..||..|..+. ..+.|..|+.++...+
T Consensus 89 ~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~-------------f~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 89 KCSDCHVPLAERC-FSRGESVYCKDDFFKR-------------FGTKCAACQLGIPPTQ 133 (182)
T ss_dssp SCTTTCCCCSSCC-EEETTEEECHHHHHHT-------------TSCCCTTTCCCCCSSC
T ss_pred ccCCCCCccCCCc-eeECCEeeecCccccc-------------cccccccCCCccCCCc
Confidence 3444444444322 2334566777777654 2358999999887654
No 184
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=55.74 E-value=38 Score=21.71 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 125 EAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 125 ~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
+.|.+.|.+++++..+.|++|...-..-||.....-+...|....-.-+ ++..-.+-|++|.....+
T Consensus 36 delkkyleefrkesqnikvlilvsndeeldkakelaqkmeidvrtrkvt-------spdeakrwikefseeggs 102 (110)
T 2kpo_A 36 DELKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQKMEIDVRTRKVT-------SPDEAKRWIKEFSEEGGS 102 (110)
T ss_dssp HHHHHHHHHHTSSTTSEEEEEEESSHHHHHHHHHHHHHTTCCEEEEECS-------SHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhhccCeEEEEEEcChHHHHHHHHHHHhhceeeeeeecC-------ChHHHHHHHHHHhhccCC
Confidence 5678888899998899999999999999999888888888875444333 277777889999985444
No 185
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=55.11 E-value=6.3 Score=28.37 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=33.3
Q ss_pred CCCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCc
Q 028376 21 KADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCR 77 (210)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr 77 (210)
+..+..|.+|.+.-.- ..--.|-..||..|+.+.+.......-....+.-.||.|+
T Consensus 60 Dg~~d~C~vC~~GG~L-lcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNL-ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCCSSE-EECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCCCcE-EeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 3456789999874321 1224889999999999775421100000013445799995
No 186
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=54.02 E-value=5.2 Score=28.45 Aligned_cols=33 Identities=27% Similarity=0.594 Sum_probs=22.3
Q ss_pred CCCccccccccccccC----CCeecCCCCcchHhhHH
Q 028376 21 KADEETCPICQEKLGN----QKMVFQCGHFTCCKCFF 53 (210)
Q Consensus 21 ~~~~~~C~iC~~~~~~----~~~~~~CgH~fC~~C~~ 53 (210)
..+...|.+|..++.- ...-..|.|.+|..|-.
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred cCCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 3566789999887731 12345788888887754
No 187
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=53.21 E-value=28 Score=22.67 Aligned_cols=36 Identities=11% Similarity=-0.012 Sum_probs=28.6
Q ss_pred CCcEEEEc-chHHHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 140 KAKILVFS-SWNDVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 140 ~~K~iVFS-Qf~~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
..+++||+ .|-.+-..+...|++.||.|..++=...
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~ 51 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGD 51 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTC
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCC
Confidence 46788886 4888888888999999999988877643
No 188
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=53.00 E-value=5.8 Score=30.49 Aligned_cols=31 Identities=19% Similarity=0.531 Sum_probs=22.5
Q ss_pred ccccccccccccCC---CeecCCCCcchHhhHHH
Q 028376 24 EETCPICQEKLGNQ---KMVFQCGHFTCCKCFFA 54 (210)
Q Consensus 24 ~~~C~iC~~~~~~~---~~~~~CgH~fC~~C~~~ 54 (210)
...|.+|...+.-- -.--.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 46899998876521 13358999999999764
No 189
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=52.29 E-value=50 Score=22.64 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=34.2
Q ss_pred CCcEEEEcc------hHHHHHHHHHHHHhCCc-eEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 140 KAKILVFSS------WNDVLDVLEHAFIANNI-TCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 140 ~~K~iVFSQ------f~~~L~li~~~L~~~gi-~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
..++|||+- +-.+-..+...|...|+ .|..++=... . .....|.++.+
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~------~-~~r~~l~~~sg 73 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDD------P-ELRQGIKDYSN 73 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSC------H-HHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCC------H-HHHHHHHHhcc
Confidence 469999986 35677778888999998 5887765533 4 44556677765
No 190
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.18 E-value=13 Score=22.35 Aligned_cols=32 Identities=22% Similarity=0.599 Sum_probs=22.1
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAMT 56 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~ 56 (210)
+.|..|...+........=|.+||..|..+.+
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred CEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 45677777765444556668888888887764
No 191
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.43 E-value=6.4 Score=30.48 Aligned_cols=31 Identities=29% Similarity=0.664 Sum_probs=22.8
Q ss_pred ccccccccccccCC---CeecCCCCcchHhhHHH
Q 028376 24 EETCPICQEKLGNQ---KMVFQCGHFTCCKCFFA 54 (210)
Q Consensus 24 ~~~C~iC~~~~~~~---~~~~~CgH~fC~~C~~~ 54 (210)
...|.+|...+.-- -.--.||++||..|-..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 45899998877531 13368999999999764
No 192
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=51.25 E-value=19 Score=24.40 Aligned_cols=50 Identities=6% Similarity=0.129 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhcCCC-CcEEEEcc-hHHHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 123 KIEAVTRRILWIKSTDPK-AKILVFSS-WNDVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 123 Ki~al~~~L~~~~~~~~~-~K~iVFSQ-f~~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
++..+.+.+..+. ++ .++|||.+ --.--......|...|+....|+|++.
T Consensus 74 ~~~~~~~~~~~~~---~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 74 KLKDIYLQAAELA---LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp GHHHHHHHHHHHH---TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cHHHHHHHHHHhc---cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3345555555543 34 67777773 323345677889999998888899853
No 193
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=51.20 E-value=40 Score=20.99 Aligned_cols=33 Identities=0% Similarity=0.057 Sum_probs=25.5
Q ss_pred CcEEEEc-chHHHHHHHHHHHHhCCceEEEeeCC
Q 028376 141 AKILVFS-SWNDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 141 ~K~iVFS-Qf~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
.++++|+ .|-..-..+...|++.||.|..++=.
T Consensus 6 ~~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~ 39 (92)
T 2khp_A 6 VDVIIYTRPGCPYCARAKALLARKGAEFNEIDAS 39 (92)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHTTCCCEEEEST
T ss_pred ccEEEEECCCChhHHHHHHHHHHcCCCcEEEECC
Confidence 4677776 57777888888888888888877665
No 194
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.97 E-value=10 Score=24.37 Aligned_cols=30 Identities=20% Similarity=0.547 Sum_probs=14.2
Q ss_pred ccccccccccCCCeecCCCCcchHhhHHHH
Q 028376 26 TCPICQEKLGNQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 26 ~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~ 55 (210)
.|..|...+........=|.+||..|..+.
T Consensus 53 ~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 82 (90)
T 2dar_A 53 NCAHCKNTMAYIGFVEEKGALYCELCYEKF 82 (90)
T ss_dssp BCSSSCCBCSSSCBEESSSCEECHHHHHHH
T ss_pred ccCCCCCCCCCCEeEeECCEEECHHHHHHH
Confidence 344444444332233344556666665544
No 195
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=50.45 E-value=33 Score=22.57 Aligned_cols=33 Identities=9% Similarity=0.294 Sum_probs=27.4
Q ss_pred CcEEEEcc-hHHHHHHHHHHHHhCCceEEEeeCC
Q 028376 141 AKILVFSS-WNDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 141 ~K~iVFSQ-f~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
.+++||+. |-.+-..+...|++.|+.|..++=.
T Consensus 19 ~~v~vy~~~~Cp~C~~~~~~L~~~~i~~~~~di~ 52 (113)
T 3rhb_A 19 NTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELD 52 (113)
T ss_dssp SSEEEEECTTCHHHHHHHHHHHHTTCCCEEEEGG
T ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCCeEEEee
Confidence 46888874 8888999999999999998777654
No 196
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=50.42 E-value=17 Score=22.11 Aligned_cols=32 Identities=6% Similarity=0.050 Sum_probs=25.2
Q ss_pred cEEEEc-chHHHHHHHHHHHHhCCceEEEeeCC
Q 028376 142 KILVFS-SWNDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 142 K~iVFS-Qf~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
++++|+ .|-..-..+...|++.|+.|..++-.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~~~i~~~~vdi~ 34 (81)
T 1h75_A 2 RITIYTRNDCVQCHATKRAMENRGFDFEMINVD 34 (81)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEETT
T ss_pred EEEEEcCCCChhHHHHHHHHHHCCCCeEEEECC
Confidence 466665 57788888888899899988888765
No 197
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=50.36 E-value=2.8 Score=26.44 Aligned_cols=51 Identities=20% Similarity=0.458 Sum_probs=31.4
Q ss_pred ccccccccccccCCCee--cCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccccc
Q 028376 24 EETCPICQEKLGNQKMV--FQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81 (210)
Q Consensus 24 ~~~C~iC~~~~~~~~~~--~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 81 (210)
...|++|...-....++ -.|...|+..|+...... . ....-.||.|...+.
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~----~---~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAP----P---EEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCC----C---SSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccC----C---CCCCEEChhccCchh
Confidence 35699998764332233 378888899998643110 0 124567999977554
No 198
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=50.18 E-value=27 Score=23.05 Aligned_cols=37 Identities=8% Similarity=0.095 Sum_probs=29.4
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGEN 174 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m 174 (210)
+++.++|||.+--.--......|...|+....++|++
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 4567888888765556678889999999888889984
No 199
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=50.13 E-value=8.4 Score=28.04 Aligned_cols=30 Identities=27% Similarity=0.778 Sum_probs=21.8
Q ss_pred Ccccccccccccc---C-CCeecCCCCcchHhhH
Q 028376 23 DEETCPICQEKLG---N-QKMVFQCGHFTCCKCF 52 (210)
Q Consensus 23 ~~~~C~iC~~~~~---~-~~~~~~CgH~fC~~C~ 52 (210)
+...|.+|..++. + ...-..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 5678999988753 1 2244688888888886
No 200
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=50.07 E-value=9.3 Score=35.24 Aligned_cols=58 Identities=21% Similarity=0.413 Sum_probs=38.9
Q ss_pred CCCccccccccccccCC-------C--eecCCCCcc--------------------hHhhHHHHHHHhhhccccCCCccc
Q 028376 21 KADEETCPICQEKLGNQ-------K--MVFQCGHFT--------------------CCKCFFAMTEQRLIHDNKVKNEWV 71 (210)
Q Consensus 21 ~~~~~~C~iC~~~~~~~-------~--~~~~CgH~f--------------------C~~C~~~~~~~~~~~~~~~~~~~~ 71 (210)
--|...|+-|+.++.++ + -.|.||-.| |..|..+|-.. .+.|-..+..
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp---~dRRfhAqp~ 179 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDP---LNRRYHAEPT 179 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCS---SSTTTTCTTC
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCC---CCCCCcCCCC
Confidence 34667899998877654 1 236777665 99999998421 2223356667
Q ss_pred cccCCccccc
Q 028376 72 MCPTCRQRTD 81 (210)
Q Consensus 72 ~CP~Cr~~~~ 81 (210)
.||.|.-.+.
T Consensus 180 aC~~CGP~l~ 189 (772)
T 4g9i_A 180 ACPVCGPSYR 189 (772)
T ss_dssp CCTTTSCCEE
T ss_pred CCccCCceEE
Confidence 8999988654
No 201
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=49.76 E-value=9.2 Score=27.01 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=32.0
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcc
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~ 78 (210)
..+..|.+|.+.-.- ..--.|-..||..|+.+.+.......-......=.|+.|+.
T Consensus 55 g~~~~C~vC~dGG~L-lcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNL-ICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSEE-EECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCee-EecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345679999864221 12247889999999997632110000000134457999955
No 202
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=49.06 E-value=24 Score=31.91 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=34.8
Q ss_pred CCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 139 PKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 139 ~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
...++|||..-....+.+...|.+.|+....+.|+|+
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~ 431 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLD 431 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCC
Confidence 4779999999999999999999999999999999977
No 203
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=48.89 E-value=12 Score=33.89 Aligned_cols=57 Identities=25% Similarity=0.539 Sum_probs=38.6
Q ss_pred CCCccccccccccccCC-------C--eecCCCCcc--------------------hHhhHHHHHHHhhhccccCCCccc
Q 028376 21 KADEETCPICQEKLGNQ-------K--MVFQCGHFT--------------------CCKCFFAMTEQRLIHDNKVKNEWV 71 (210)
Q Consensus 21 ~~~~~~C~iC~~~~~~~-------~--~~~~CgH~f--------------------C~~C~~~~~~~~~~~~~~~~~~~~ 71 (210)
--|...|+-|+.++.++ + -.|.||-.| |..|..+|-.. .+.|-..+..
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp---~dRRfHAqp~ 90 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDP---LDRRFHAQPV 90 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCT---TSTTTTCTTC
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCC---CCCcCcCCCC
Confidence 35677899998777654 1 236677655 99999998422 1223346667
Q ss_pred cccCCcccc
Q 028376 72 MCPTCRQRT 80 (210)
Q Consensus 72 ~CP~Cr~~~ 80 (210)
.||.|.-.+
T Consensus 91 aCp~CGP~l 99 (657)
T 3ttc_A 91 ACPECGPYL 99 (657)
T ss_dssp CCTTTSCCE
T ss_pred cCcccCccc
Confidence 899998866
No 204
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=48.37 E-value=3.7 Score=34.68 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=0.0
Q ss_pred CCccccccccccccCC---CeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccc
Q 028376 22 ADEETCPICQEKLGNQ---KMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRT 80 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~---~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 80 (210)
.+...|..|...+..- -.-..||++||..|....+.- +..+ ......|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~--~~~~--~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPL--KYLK--DRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeC--CCCC--CCcCEecHHHHHHH
Confidence 3456799998876421 233689999999998765321 1111 23345677775543
No 205
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.89 E-value=13 Score=22.95 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=28.6
Q ss_pred CccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCC
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGN 84 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 84 (210)
....|..|..++.....+..-+..++.+|+ .|..|+.++....
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF-------------------~C~~C~~~L~~~~ 50 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCL-------------------KCERCSKTLTPGG 50 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTC-------------------BCSSSCCBCCTTS
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCC-------------------CCCCCCCccCCCc
Confidence 346799998887643455556666666653 6888888876543
No 206
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=47.20 E-value=21 Score=21.13 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=25.0
Q ss_pred cEEEEc-chHHHHHHHHHHHHhCCceEEEeeCC
Q 028376 142 KILVFS-SWNDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 142 K~iVFS-Qf~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
++++|+ .|-..-..+...|++.|+.|..++-.
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~~~i~~~~~di~ 34 (75)
T 1r7h_A 2 SITLYTKPACVQCTATKKALDRAGLAYNTVDIS 34 (75)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEETT
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEECC
Confidence 456665 57778888888899999998888765
No 207
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=46.77 E-value=44 Score=20.66 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=27.4
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
+++.++|||.+--.--......|...|+.-+.+.|++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCHH
Confidence 45677888887655566778899999997444447754
No 208
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.58 E-value=16 Score=22.03 Aligned_cols=31 Identities=23% Similarity=0.615 Sum_probs=20.4
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~ 55 (210)
+.|..|..++........=+.+||..|..+.
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 4566676666544444566778888887765
No 209
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=45.97 E-value=18 Score=23.44 Aligned_cols=37 Identities=5% Similarity=0.125 Sum_probs=28.7
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGEN 174 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m 174 (210)
+++.++|||..--.--......|...|+....++|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 3566788887765556678889999999888889984
No 210
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=45.87 E-value=12 Score=22.39 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=18.0
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~ 55 (210)
+.|..|..++........=|.+||..|..+.
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETHYNQL 62 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHHHHHH
Confidence 3456666555543344556667777776554
No 211
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.94 E-value=12 Score=22.72 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=17.3
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~ 55 (210)
+.|..|...+........=|.+||..|..+.
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp CBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred CEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 3455565555543344456667777776543
No 212
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=44.89 E-value=6 Score=26.42 Aligned_cols=45 Identities=18% Similarity=0.471 Sum_probs=26.9
Q ss_pred cccccccccccCCCee--cCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcc
Q 028376 25 ETCPICQEKLGNQKMV--FQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~--~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~ 78 (210)
..| ||...-....++ -.|.-.|+..|+..-... ....-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~--------~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQH--------IPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTS--------CCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccC--------CCCCEECCCCcC
Confidence 457 787655443333 377778888887642110 123568999964
No 213
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.81 E-value=23 Score=22.28 Aligned_cols=44 Identities=30% Similarity=0.581 Sum_probs=28.7
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCC
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGN 84 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 84 (210)
.....|..|...+.....+..-+..++..|+ .|-.|+.++....
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF-------------------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCF-------------------RCHTCEATLWPGG 56 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTC-------------------BCSSSCCBCCTTS
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcC-------------------EEcCCCCCcCCCc
Confidence 3456899998887533344445555655553 6888888876654
No 214
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=44.63 E-value=33 Score=23.36 Aligned_cols=34 Identities=15% Similarity=0.417 Sum_probs=23.4
Q ss_pred cccccccccccC-CCeecCCCCcchHhhHHHHHHH
Q 028376 25 ETCPICQEKLGN-QKMVFQCGHFTCCKCFFAMTEQ 58 (210)
Q Consensus 25 ~~C~iC~~~~~~-~~~~~~CgH~fC~~C~~~~~~~ 58 (210)
+.|..|...+.. ......=|..||..|..+.+..
T Consensus 37 F~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp CBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred CccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 456777777732 2355667889999999887643
No 215
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.58 E-value=5.9 Score=22.76 Aligned_cols=46 Identities=20% Similarity=0.523 Sum_probs=27.6
Q ss_pred ccccccccccCCCee--cCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcc
Q 028376 26 TCPICQEKLGNQKMV--FQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78 (210)
Q Consensus 26 ~C~iC~~~~~~~~~~--~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~ 78 (210)
.|.+|...-....++ -.|...|+..|+..-+.. . ..+.-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~-~------P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYE-V------PDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCS-C------CSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCC-C------CCCcEECcCccc
Confidence 588887643222233 478888999998753211 0 133456999965
No 216
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.43 E-value=32 Score=22.92 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=31.9
Q ss_pred CcEEEEcc-hHHHHH------HHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHH
Q 028376 141 AKILVFSS-WNDVLD------VLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKEL 192 (210)
Q Consensus 141 ~K~iVFSQ-f~~~L~------li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F 192 (210)
-+++||+. |-.+-. .+...|+.+||.|..+|=... ...|....+.+
T Consensus 8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~------~~~~~~l~~~~ 60 (111)
T 2ct6_A 8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMS------EEQRQWMYKNV 60 (111)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTC------HHHHHHHHHSC
T ss_pred cEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCC------HHHHHHHHHHh
Confidence 47888874 444444 588889999999998888754 55555554443
No 217
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=43.32 E-value=3 Score=26.81 Aligned_cols=32 Identities=31% Similarity=0.549 Sum_probs=21.4
Q ss_pred cccccc--ccccccC----CCee-c-----CCCCcchHhhHHHH
Q 028376 24 EETCPI--CQEKLGN----QKMV-F-----QCGHFTCCKCFFAM 55 (210)
Q Consensus 24 ~~~C~i--C~~~~~~----~~~~-~-----~CgH~fC~~C~~~~ 55 (210)
..-||. |...+.. ..+. . .|||.||..|...|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 556887 8655421 1223 2 69999999998877
No 218
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=43.21 E-value=15 Score=24.30 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=26.4
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGEN 174 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m 174 (210)
+++.++||+..--.--......|...|+.-+.+.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 3456677776533333456788999999988899984
No 219
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=42.62 E-value=44 Score=20.05 Aligned_cols=32 Identities=0% Similarity=0.052 Sum_probs=23.0
Q ss_pred cEEEEc-chHHHHHHHHHHHHhCCceEEEeeCC
Q 028376 142 KILVFS-SWNDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 142 K~iVFS-Qf~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
++++|+ .|-..-..+...|++.||.|..++=.
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~ 34 (82)
T 1fov_A 2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPID 34 (82)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCCCEEEECT
T ss_pred cEEEEECCCChhHHHHHHHHHHCCCCcEEEECC
Confidence 466665 46677777788888888887777654
No 220
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=42.36 E-value=12 Score=34.48 Aligned_cols=57 Identities=26% Similarity=0.507 Sum_probs=36.7
Q ss_pred CCccccccccccccCCC---------eecCCCCcc--------------------hHhhHHHHHHHhhhccccCCCcccc
Q 028376 22 ADEETCPICQEKLGNQK---------MVFQCGHFT--------------------CCKCFFAMTEQRLIHDNKVKNEWVM 72 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~---------~~~~CgH~f--------------------C~~C~~~~~~~~~~~~~~~~~~~~~ 72 (210)
-|...|+-|+.++.++. -.|.||-.| |..|..+|-.. .+.|-..+...
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp---~~RRfhAqp~a 185 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDP---HDRRFHAQPVA 185 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCT---TSTTTTCTTCC
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCc---ccccccCCCCc
Confidence 35567999988776541 235666443 99999998321 12223456678
Q ss_pred ccCCccccc
Q 028376 73 CPTCRQRTD 81 (210)
Q Consensus 73 CP~Cr~~~~ 81 (210)
||.|.-.+.
T Consensus 186 C~~CGP~l~ 194 (761)
T 3vth_A 186 CFDCGPSLS 194 (761)
T ss_dssp CTTTSCCEE
T ss_pred CCccCCeeE
Confidence 999987653
No 221
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=41.97 E-value=8.3 Score=23.75 Aligned_cols=49 Identities=16% Similarity=0.441 Sum_probs=30.9
Q ss_pred CccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccc
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQR 79 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 79 (210)
....|.+|.+.- +-..--.|...|+..|+..-+... ..+.-.||.|...
T Consensus 11 ~~~~C~vC~~~~-~ll~Cd~C~~~~H~~Cl~P~l~~~-------P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGT-DVLRCTHCAAAFHWRCHFPAGTSR-------PGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCT-TCEECSSSCCEECHHHHCTTTCCC-------CSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCC-eEEECCCCCCceecccCCCccCcC-------CCCCEECccccCC
Confidence 446799998642 211224899999999997653210 1334579999653
No 222
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=41.62 E-value=13 Score=31.34 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=32.0
Q ss_pred CCccccccccccccCCCeec--CCCCcchHhhHHHHHHHhhhccccCCCccccccCCcc
Q 028376 22 ADEETCPICQEKLGNQKMVF--QCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~--~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~ 78 (210)
.....|.+|.+.-.- ..-- .|...||..|+...+.......-. ....=.|=+|..
T Consensus 91 G~~~yCr~C~~Gg~l-~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~-~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSGETL-LICGNPDCTRCYCFECVDSLVGPGTSGKVH-AMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCCSSC-EECCSTTCCCEECHHHHHHHTCTTHHHHHH-HCSSCCCTTTSS
T ss_pred CCcccceEcCCCCeE-EEeCCCCCCcchHHHHHHHhcChhHHHHhh-ccCCceEEEcCC
Confidence 345679999864321 1223 899999999999886332111000 123335777764
No 223
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=41.54 E-value=9.8 Score=22.79 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=14.3
Q ss_pred cccccccccccCCCeecCCCCcch-HhhHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTC-CKCFF 53 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC-~~C~~ 53 (210)
+.|..|..++........=|..|| .+|..
T Consensus 33 F~C~~C~~~L~~~~f~~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 33 FLCSCCSKCLIGQKFMPVEGMVFCSVECKK 62 (65)
T ss_dssp SBCTTTCCBCTTSCCEEETTEEESSHHHHH
T ss_pred EECCCCCCcCCCCceEEECCEEecCHHHhh
Confidence 345555555543333344455666 55554
No 224
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.01 E-value=14 Score=23.21 Aligned_cols=41 Identities=20% Similarity=0.477 Sum_probs=27.7
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccccc
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 81 (210)
.....|..|...+.....+..-+..++.+|+ .|..|+.++.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF-------------------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCF-------------------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTC-------------------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccC-------------------CcCcCCCCcC
Confidence 3456899999887643345555656655553 6888988876
No 225
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.95 E-value=16 Score=22.05 Aligned_cols=31 Identities=26% Similarity=0.588 Sum_probs=19.0
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~ 55 (210)
+.|..|..++........=|.+||..|..+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 4456666666544444556677777777654
No 226
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=40.95 E-value=60 Score=19.74 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=25.0
Q ss_pred CcEEEEc-chHHHHHHHHHHHHhCCceEEEee
Q 028376 141 AKILVFS-SWNDVLDVLEHAFIANNITCIKMK 171 (210)
Q Consensus 141 ~K~iVFS-Qf~~~L~li~~~L~~~gi~~~~~~ 171 (210)
-+++||+ .|-..-..+...|.+.|+.|..++
T Consensus 4 m~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~~ 35 (89)
T 3msz_A 4 MKVKIYTRNGCPYCVWAKQWFEENNIAFDETI 35 (89)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEEEcCCChhHHHHHHHHHHcCCCceEEE
Confidence 3688887 588888889999999998876554
No 227
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=40.23 E-value=18 Score=23.53 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=28.2
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGEN 174 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m 174 (210)
+++.++|||..--.--......|...|+....++|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 3466788887755455677888999999888889984
No 228
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=39.28 E-value=12 Score=27.32 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=30.5
Q ss_pred CccccccccccccCCCee-c--CCCCcchHhhHHHHHHHhhhccccCCCccccccCCcc
Q 028376 23 DEETCPICQEKLGNQKMV-F--QCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~-~--~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~ 78 (210)
....|.+|.+.-. .+. . .|-..||..||...+.......-. ....=.|=+|.-
T Consensus 78 ~~~yC~wC~~Gg~--l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~-~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCGGRE--VLMCGNNNCCRCFCVECVDLLVGPGAAQAAI-KEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSCCSE--EEECSSTTTCCEEEHHHHHHHTCTTHHHHHH-TSSSCCCTTTCS
T ss_pred CcceeeEecCCCe--EEeeCCCCCCCchhHHHHHHhcCHhHHHHHh-ccCCCEEEecCC
Confidence 3467999986321 122 2 688999999999886442211000 123334777753
No 229
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=39.27 E-value=14 Score=24.50 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=19.4
Q ss_pred ccccccccccccCCCeecC--CCCcchHh
Q 028376 24 EETCPICQEKLGNQKMVFQ--CGHFTCCK 50 (210)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~~--CgH~fC~~ 50 (210)
...|..|...-.+-.+-+. |||++|..
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 4579999854333357788 99999954
No 230
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=39.04 E-value=3.9 Score=24.74 Aligned_cols=50 Identities=18% Similarity=0.472 Sum_probs=32.4
Q ss_pred cCCCCccccccccccccCCCee--cCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcc
Q 028376 19 LSKADEETCPICQEKLGNQKMV--FQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQ 78 (210)
Q Consensus 19 l~~~~~~~C~iC~~~~~~~~~~--~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~ 78 (210)
+.+.+...|.+|... . .++ -.|-..|+..|+..-+.. . ..+.-.||.|..
T Consensus 6 ~~~~~~~~C~vC~~~--g-~ll~CD~C~~~fH~~Cl~p~l~~-~------p~g~W~C~~C~~ 57 (61)
T 2l5u_A 6 YETDHQDYCEVCQQG--G-EIILCDTCPRAYHMVCLDPDMEK-A------PEGKWSCPHCEK 57 (61)
T ss_dssp CSSCCCSSCTTTSCC--S-SEEECSSSSCEEEHHHHCTTCCS-C------CCSSCCCTTGGG
T ss_pred ccCCCCCCCccCCCC--C-cEEECCCCChhhhhhccCCCCCC-C------CCCceECccccc
Confidence 345567789999873 2 233 378889999999864211 0 234557999965
No 231
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=39.02 E-value=26 Score=22.31 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=27.4
Q ss_pred CcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 141 AKILVFSSWNDVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 141 ~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
.++|||.+--.--......|...|+....++|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67888888666666778889999999666789854
No 232
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=38.98 E-value=25 Score=26.04 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=24.5
Q ss_pred ccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccc
Q 028376 26 TCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQR 79 (210)
Q Consensus 26 ~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 79 (210)
.|..|...+........=|.+||..|..+.+ ...|..|...
T Consensus 144 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f-------------~~kc~~C~~~ 184 (192)
T 1b8t_A 144 RCAKCGKSLESTTLADKDGEIYCKGCYAKNF-------------GPKGFGFGQG 184 (192)
T ss_dssp BCTTTCCBCCSSSEEEETTEEEEHHHHHHHT-------------CCCCCCCCCC
T ss_pred CccccCCCCCCCcccccCCEEeCHHHHHHhc-------------CCcCCCCCCc
Confidence 4555555554333455567778888877653 2467777654
No 233
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=38.92 E-value=53 Score=25.94 Aligned_cols=37 Identities=8% Similarity=0.031 Sum_probs=28.3
Q ss_pred cCCCCcEEEEcchHHHHHHHHHHHHhCCce-EEEeeCC
Q 028376 137 TDPKAKILVFSSWNDVLDVLEHAFIANNIT-CIKMKGE 173 (210)
Q Consensus 137 ~~~~~K~iVFSQf~~~L~li~~~L~~~gi~-~~~~~G~ 173 (210)
.+++.++|+|..--.--......|...|+. ...++|+
T Consensus 178 ~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GG 215 (265)
T 4f67_A 178 DKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDG 215 (265)
T ss_dssp GGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTH
T ss_pred hCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCH
Confidence 356788999988655556777888899994 5668998
No 234
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=38.85 E-value=34 Score=22.36 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=28.5
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCce-EEEeeCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNIT-CIKMKGEN 174 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~-~~~~~G~m 174 (210)
+++.++|||..--.--......|...|+. ...++|++
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 45667888887666667788899999996 56678984
No 235
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.85 E-value=18 Score=21.82 Aligned_cols=31 Identities=19% Similarity=0.517 Sum_probs=19.4
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~ 55 (210)
+.|..|...+........=|.+||..|..+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHHHhHH
Confidence 4566666666554344555777888887655
No 236
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=38.56 E-value=32 Score=20.93 Aligned_cols=9 Identities=0% Similarity=0.113 Sum_probs=4.4
Q ss_pred CCceEEEee
Q 028376 163 NNITCIKMK 171 (210)
Q Consensus 163 ~gi~~~~~~ 171 (210)
.||.|..++
T Consensus 29 ~~i~~~~vd 37 (85)
T 1ego_A 29 DDFQYQYVD 37 (85)
T ss_dssp SSCEEEEEC
T ss_pred CCceEEEEe
Confidence 455555443
No 237
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=38.56 E-value=12 Score=23.07 Aligned_cols=11 Identities=18% Similarity=0.715 Sum_probs=6.0
Q ss_pred ccccccccccc
Q 028376 25 ETCPICQEKLG 35 (210)
Q Consensus 25 ~~C~iC~~~~~ 35 (210)
..|+.|..++.
T Consensus 16 ~~C~~C~~~I~ 26 (77)
T 2egq_A 16 KKCAGCKNPIT 26 (77)
T ss_dssp CCCSSSCCCCC
T ss_pred ccCcccCCccc
Confidence 35666655554
No 238
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=38.33 E-value=17 Score=25.02 Aligned_cols=39 Identities=15% Similarity=0.606 Sum_probs=28.1
Q ss_pred ccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccccc
Q 028376 24 EETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81 (210)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 81 (210)
...|..|..++....++..-+..++..|+ .|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF-------------------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCL-------------------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTS-------------------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEccccc-------------------CcCcCCCccc
Confidence 35799998888765456666666666663 6888988875
No 239
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.83 E-value=27 Score=21.75 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=28.8
Q ss_pred CccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCC
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIG 83 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 83 (210)
....|..|...+... .+..-|..++.+|+ .|..|+.++...
T Consensus 14 ~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF-------------------~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIIDEQ-PLIFKNDPYHPDHF-------------------NCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCCSC-CCCCSSSCCCTTTS-------------------BCSSSCCBCCTT
T ss_pred CCCCCccCCCEecce-EEEECcceeCCCCC-------------------EeCCCCCccCCC
Confidence 456799998887753 55556666666553 688898888755
No 240
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=37.72 E-value=41 Score=22.15 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=29.2
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
+++.++|||.+--.--......|...|+.-..++|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 55678888887655556778899999996567899964
No 241
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=37.50 E-value=88 Score=20.66 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 125 EAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 125 ~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
+.|.+..+.+..+..-+|++|.|.-..+|.-.-......|+..+.+- ..+-..-+++|..
T Consensus 36 delkkemkklaeeknfekiliisndkqllkemlelisklgykvflll----------qdqdeneleefkr 95 (134)
T 2lci_A 36 DELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLL----------QDQDENELEEFKR 95 (134)
T ss_dssp HHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEE----------ECSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEe----------ecCchhHHHHHHH
Confidence 45666777777777789999999977776655555566777754442 2355566777765
No 242
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=37.46 E-value=39 Score=21.09 Aligned_cols=33 Identities=9% Similarity=-0.010 Sum_probs=24.0
Q ss_pred CcEEEEc-chHHHHHHHHHHHHhCCceEEEeeCC
Q 028376 141 AKILVFS-SWNDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 141 ~K~iVFS-Qf~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
.+++||+ .|-..-..+...|++.|+.|..++=.
T Consensus 12 ~~v~ly~~~~Cp~C~~~~~~L~~~gi~~~~~~v~ 45 (92)
T 3ic4_A 12 AEVLMYGLSTCPHCKRTLEFLKREGVDFEVIWID 45 (92)
T ss_dssp SSSEEEECTTCHHHHHHHHHHHHHTCCCEEEEGG
T ss_pred ceEEEEECCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 4577775 47777788888888888887766543
No 243
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=37.34 E-value=61 Score=21.67 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=26.9
Q ss_pred CcEEEEcc-hHHHHHHH-HHHHHhCC---ceEEEeeCC
Q 028376 141 AKILVFSS-WNDVLDVL-EHAFIANN---ITCIKMKGE 173 (210)
Q Consensus 141 ~K~iVFSQ-f~~~L~li-~~~L~~~g---i~~~~~~G~ 173 (210)
.+++||+. |-..-..+ ...|+..| +.|..++=.
T Consensus 25 ~~Vvvf~~~~Cp~C~~alk~~L~~~~~~~i~~~~vdid 62 (118)
T 3c1r_A 25 NEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLN 62 (118)
T ss_dssp SSEEEEECSSCHHHHHHHHHHHTTSCCCGGGEEEEEGG
T ss_pred CcEEEEEcCCCcCHHHHHHHHHHHcCCCCCCeEEEECc
Confidence 37888875 77777777 99999999 999888765
No 244
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.24 E-value=13 Score=22.84 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=14.1
Q ss_pred cccccccccc-CCCeecCCCCcchHhhHHHH
Q 028376 26 TCPICQEKLG-NQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 26 ~C~iC~~~~~-~~~~~~~CgH~fC~~C~~~~ 55 (210)
.|..|..++. .......=|.+||..|...+
T Consensus 33 ~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 33 LCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp CCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred EeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 3445555444 22233344555666665543
No 245
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=36.78 E-value=14 Score=24.76 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=11.8
Q ss_pred chHhhHHHHHHHhh
Q 028376 47 TCCKCFFAMTEQRL 60 (210)
Q Consensus 47 fC~~C~~~~~~~~~ 60 (210)
||+.|+..|.....
T Consensus 43 FCRNCLskWy~~aA 56 (105)
T 2o35_A 43 FCRNCLSNWYREAA 56 (105)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999986643
No 246
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.69 E-value=12 Score=23.31 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=7.7
Q ss_pred ccccccccccccC
Q 028376 24 EETCPICQEKLGN 36 (210)
Q Consensus 24 ~~~C~iC~~~~~~ 36 (210)
...|..|...+..
T Consensus 15 ~~~C~~C~~~I~~ 27 (79)
T 1x62_A 15 LPMCDKCGTGIVG 27 (79)
T ss_dssp CCCCSSSCCCCCS
T ss_pred CCccccCCCCccC
Confidence 3567777665554
No 247
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=36.55 E-value=13 Score=24.86 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=11.3
Q ss_pred chHhhHHHHHHHh
Q 028376 47 TCCKCFFAMTEQR 59 (210)
Q Consensus 47 fC~~C~~~~~~~~ 59 (210)
||+.|+..|....
T Consensus 42 FCRNCLskWy~~a 54 (104)
T 3fyb_A 42 FCRNCLAKWLMEA 54 (104)
T ss_dssp CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998653
No 248
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.10 E-value=18 Score=23.07 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=6.2
Q ss_pred cccccccccccC
Q 028376 25 ETCPICQEKLGN 36 (210)
Q Consensus 25 ~~C~iC~~~~~~ 36 (210)
..|..|...+..
T Consensus 26 ~~C~~C~~~I~~ 37 (89)
T 1x64_A 26 PLCDKCGSGIVG 37 (89)
T ss_dssp CBCTTTCCBCCS
T ss_pred CCcccCCCEecc
Confidence 446666555443
No 249
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=35.74 E-value=11 Score=25.68 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=19.1
Q ss_pred ccccccccccccCCCeecCCCCcchH
Q 028376 24 EETCPICQEKLGNQKMVFQCGHFTCC 49 (210)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~~CgH~fC~ 49 (210)
...|..|...-.. .+-+.|||++|.
T Consensus 24 ~~~C~~C~~~~~~-W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQEN-WVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSE-EEETTTCCEEEC
T ss_pred CCcCccccCCCCe-eeeeecCccccC
Confidence 3569999865443 678999999994
No 250
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=35.68 E-value=10 Score=20.18 Aligned_cols=14 Identities=36% Similarity=0.902 Sum_probs=10.9
Q ss_pred CccccccccccccC
Q 028376 23 DEETCPICQEKLGN 36 (210)
Q Consensus 23 ~~~~C~iC~~~~~~ 36 (210)
+.+.||+|+..+..
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 45789999887765
No 251
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=35.30 E-value=5.4 Score=29.72 Aligned_cols=51 Identities=18% Similarity=0.412 Sum_probs=31.3
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccc
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRT 80 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 80 (210)
.++..|.+|.+.- .-..--.|...|+..|+.+-+.. . ..+.-.||.|+...
T Consensus 2 ~~~~~C~~C~~~g-~ll~Cd~C~~~~H~~C~~p~l~~-~------p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNGG-ELLCCEKCPKVFHLSCHVPTLTN-F------PSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCCS-SCEECSSSSCEECTTTSSSCCSS-C------CSSCCCCTTTSCSS
T ss_pred CCCCccccCCCCC-eeeecCCCCcccCccccCCCCCC-C------CCCCEECccccCcc
Confidence 3557799998642 21122478888888997654211 0 23445799998754
No 252
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.09 E-value=32 Score=21.18 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=19.8
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~ 55 (210)
+.|..|..++........=|.+||..|..+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 4566666666543345556777888887665
No 253
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=34.93 E-value=60 Score=21.37 Aligned_cols=34 Identities=6% Similarity=-0.080 Sum_probs=27.5
Q ss_pred CCcEEEEcc-hHHHHHHHHHHHHhCCce---EEEeeCC
Q 028376 140 KAKILVFSS-WNDVLDVLEHAFIANNIT---CIKMKGE 173 (210)
Q Consensus 140 ~~K~iVFSQ-f~~~L~li~~~L~~~gi~---~~~~~G~ 173 (210)
..++++|+. |-..-..+...|++.|+. |..++=.
T Consensus 18 ~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~ 55 (114)
T 2hze_A 18 NNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIK 55 (114)
T ss_dssp TTCEEEEECTTCHHHHHHHHHHTTSCBCTTSEEEEEGG
T ss_pred cCCEEEEEeCCChhHHHHHHHHHHcCCCcCceEEEEcc
Confidence 457888876 878888889999999999 8877654
No 254
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.89 E-value=24 Score=22.44 Aligned_cols=33 Identities=33% Similarity=0.785 Sum_probs=23.2
Q ss_pred CCCccccccccccccC----CCeecCCCCcchHhhHH
Q 028376 21 KADEETCPICQEKLGN----QKMVFQCGHFTCCKCFF 53 (210)
Q Consensus 21 ~~~~~~C~iC~~~~~~----~~~~~~CgH~fC~~C~~ 53 (210)
......|..|..++.- ..+--.|.|..|.+|-.
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv 58 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRI 58 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccccc
Confidence 3455789999887642 23456888988888854
No 255
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.88 E-value=32 Score=21.17 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=19.7
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~ 55 (210)
+.|..|..++........=|.+||..|..+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTSRDEDPYCVACFGEL 72 (80)
T ss_dssp CBCSSSCCBCTTCCEEECSSSEEEHHHHHHH
T ss_pred CCcccCCCcCCCCeeEeECCEEECHHHHHHH
Confidence 4566666666543455566777888887665
No 256
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=34.84 E-value=14 Score=18.85 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=17.8
Q ss_pred cccccccccccCCCeecCCCCcchHhhH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCF 52 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~ 52 (210)
..|+.|...+-..-.+..=|..|+..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 4799997765432344556777777663
No 257
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.72 E-value=22 Score=22.10 Aligned_cols=31 Identities=23% Similarity=0.539 Sum_probs=17.4
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~ 55 (210)
+.|..|...+........=|.+||..|..+.
T Consensus 44 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 74 (82)
T 1x63_A 44 FTCSNCKQVIGTGSFFPKGEDFYCVTCHETK 74 (82)
T ss_dssp CCCSSSCCCCTTSCEEEETTEEEEHHHHHHH
T ss_pred CchhhCCCccCCCccEeeCCEEECHHHHHHH
Confidence 3455555555443344455667777776654
No 258
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.49 E-value=30 Score=22.10 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=12.0
Q ss_pred cccccccccCCCeecCCCCcchHhhHHHH
Q 028376 27 CPICQEKLGNQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 27 C~iC~~~~~~~~~~~~CgH~fC~~C~~~~ 55 (210)
|..|...+........=|.+||..|..+.
T Consensus 45 C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 73 (91)
T 2d8y_A 45 CSYCNNKLSLGTYASLHGRIYCKPHFNQL 73 (91)
T ss_dssp CTTTCCBCCTTTCCCSSSCCCCHHHHHHH
T ss_pred eCCCCCCCCCCCcEeECCEEECHHHHHHH
Confidence 33444443332223333445555555443
No 259
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=33.00 E-value=4.9 Score=30.64 Aligned_cols=51 Identities=18% Similarity=0.349 Sum_probs=31.3
Q ss_pred CCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccc
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRT 80 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 80 (210)
.....|.+|...-. -..--.|...|+..|+.+-+.. ...+.-.||.|+...
T Consensus 5 ~~~~~C~~C~~~g~-ll~Cd~C~~~~H~~Cl~p~l~~-------~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGD-LLCCEKCPKVFHLTCHVPTLLS-------FPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEE-EEECSSSSCEECTTTSSSCCSS-------CCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCc-eEEcCCCCCccCCccCCCCCCC-------CCCCCEEeCceeCcc
Confidence 45577999986422 1122478888889998653211 023445799998754
No 260
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=32.97 E-value=18 Score=21.63 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=7.5
Q ss_pred Ccccccccccccc
Q 028376 23 DEETCPICQEKLG 35 (210)
Q Consensus 23 ~~~~C~iC~~~~~ 35 (210)
....|..|...+.
T Consensus 10 ~~~~C~~C~~~i~ 22 (72)
T 3f6q_B 10 ASATCERCKGGFA 22 (72)
T ss_dssp TTCBCTTTCCBCC
T ss_pred CCccchhcCcccc
Confidence 3446666666554
No 261
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=32.82 E-value=23 Score=33.71 Aligned_cols=60 Identities=2% Similarity=0.005 Sum_probs=47.2
Q ss_pred CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCC
Q 028376 121 GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMP 197 (210)
Q Consensus 121 SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p 197 (210)
..|...|.+.|... +.++|||..-....+.+...|... ++...+.|.| .++++.|..+.-
T Consensus 261 ~~k~~~L~~ll~~~-----~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----------~~~l~~F~~G~~ 320 (1054)
T 1gku_B 261 DESISTLSSILEKL-----GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----------KGDYEKFVEGEI 320 (1054)
T ss_dssp CCCTTTTHHHHTTS-----CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----------SHHHHHHHHTSC
T ss_pred hhHHHHHHHHHhhc-----CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----------HHHHHHHHcCCC
Confidence 45666666555432 578999999999999999999988 9888898873 478899998543
No 262
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=32.72 E-value=88 Score=19.26 Aligned_cols=32 Identities=6% Similarity=-0.110 Sum_probs=24.2
Q ss_pred cEEEEcc-----hHHHHHHHHHHHHhCCceEEEeeCC
Q 028376 142 KILVFSS-----WNDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 142 K~iVFSQ-----f~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
|++||+. |-.+-..+...|+..||.|..++=.
T Consensus 1 ~v~iY~~~~~~~~Cp~C~~ak~~L~~~gi~y~~idI~ 37 (87)
T 1aba_A 1 MFKVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIM 37 (87)
T ss_dssp CEEEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEEeCCCCCcCccHHHHHHHHHHcCCCEEEEEee
Confidence 4566654 5567788889999999999887665
No 263
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=32.30 E-value=86 Score=19.86 Aligned_cols=34 Identities=9% Similarity=-0.055 Sum_probs=26.1
Q ss_pred CCcEEEEcc-hHHHHHHHHHHHHhCCce---EEEeeCC
Q 028376 140 KAKILVFSS-WNDVLDVLEHAFIANNIT---CIKMKGE 173 (210)
Q Consensus 140 ~~K~iVFSQ-f~~~L~li~~~L~~~gi~---~~~~~G~ 173 (210)
..++++|+. |-..-..+...|+..|+. |..++=.
T Consensus 11 ~~~v~~f~~~~C~~C~~~~~~L~~~~~~~~~~~~vdi~ 48 (105)
T 1kte_A 11 PGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDIT 48 (105)
T ss_dssp TTCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGG
T ss_pred cCCEEEEEcCCCHhHHHHHHHHHHcCCCCCccEEEEcc
Confidence 346888764 878888899999999988 7666543
No 264
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.83 E-value=8.2 Score=26.22 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=18.0
Q ss_pred CCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccc
Q 028376 37 QKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQR 79 (210)
Q Consensus 37 ~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 79 (210)
++.-..||+.|+ .. ......||.|+..
T Consensus 67 p~~C~~CG~~F~----~~------------~~kPsrCP~CkSe 93 (105)
T 2gmg_A 67 PAQCRKCGFVFK----AE------------INIPSRCPKCKSE 93 (105)
T ss_dssp CCBBTTTCCBCC----CC------------SSCCSSCSSSCCC
T ss_pred CcChhhCcCeec----cc------------CCCCCCCcCCCCC
Confidence 346678999982 11 2455789999874
No 265
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=31.80 E-value=46 Score=22.29 Aligned_cols=33 Identities=6% Similarity=0.058 Sum_probs=26.3
Q ss_pred CcEEEEcc-hHHHHHHHHHHHHh----CCceEEEeeCC
Q 028376 141 AKILVFSS-WNDVLDVLEHAFIA----NNITCIKMKGE 173 (210)
Q Consensus 141 ~K~iVFSQ-f~~~L~li~~~L~~----~gi~~~~~~G~ 173 (210)
.++++|+. |-..-+.+...|++ .||.|..+|=.
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~i~~~~vDId 67 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSWFELEVINID 67 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETT
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46888888 87877777777776 88999888765
No 266
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=31.61 E-value=45 Score=21.74 Aligned_cols=38 Identities=8% Similarity=0.131 Sum_probs=28.2
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCce-EEEeeCCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNIT-CIKMKGENH 175 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~-~~~~~G~m~ 175 (210)
+++.++|||.+--.--......|...|+. ...++|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 45677888887655566777889999996 567899843
No 267
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.46 E-value=28 Score=21.61 Aligned_cols=41 Identities=24% Similarity=0.539 Sum_probs=27.6
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccccCCCe
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTDIGNI 85 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 85 (210)
..|..|...+.. ..+..-+..++..|+ .|-.|+.++...+.
T Consensus 16 ~~C~~C~~~I~~-~~v~a~~~~wH~~CF-------------------~C~~C~~~L~~~~~ 56 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVSALGKTYHPDCF-------------------VCAVCRLPFPPGDR 56 (81)
T ss_dssp CBCTTTCCBCCS-CCEEETTEEECTTTS-------------------SCSSSCCCCCSSSC
T ss_pred CcCccccCEecc-ceEEECCceeCccCC-------------------ccccCCCCCCCCCE
Confidence 478888887764 355555666666553 68888888765543
No 268
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.33 E-value=68 Score=20.01 Aligned_cols=52 Identities=19% Similarity=0.417 Sum_probs=30.8
Q ss_pred Ccccccccccccc-CCCee--cCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccccc
Q 028376 23 DEETCPICQEKLG-NQKMV--FQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRTD 81 (210)
Q Consensus 23 ~~~~C~iC~~~~~-~~~~~--~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 81 (210)
+...| +|..+.. ...++ -.|...|+..|+.-...... ......||.|+....
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~------~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAV------DIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHT------TCSBBCCTTTTTTSC
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccccccc------CCCeEECCCcccccC
Confidence 34567 8987653 22233 36777888889864322110 135678999987543
No 269
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=29.87 E-value=39 Score=23.64 Aligned_cols=38 Identities=8% Similarity=0.036 Sum_probs=27.7
Q ss_pred CCCCcEEEEcchH--HHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 138 DPKAKILVFSSWN--DVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 138 ~~~~K~iVFSQf~--~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
+++.++|||..-- .--......|...|+....|+|++.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 3456778887754 2456677899999999778899843
No 270
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.72 E-value=14 Score=24.93 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=10.1
Q ss_pred cccccCCcccccC
Q 028376 70 WVMCPTCRQRTDI 82 (210)
Q Consensus 70 ~~~CP~Cr~~~~~ 82 (210)
...||+|+.++..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4579999988764
No 271
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=29.31 E-value=23 Score=32.54 Aligned_cols=35 Identities=26% Similarity=0.672 Sum_probs=26.0
Q ss_pred ccccccccccccCC---------CeecCCCCcchHhhHHHHHHH
Q 028376 24 EETCPICQEKLGNQ---------KMVFQCGHFTCCKCFFAMTEQ 58 (210)
Q Consensus 24 ~~~C~iC~~~~~~~---------~~~~~CgH~fC~~C~~~~~~~ 58 (210)
...||+|.-.+.+. ...++||-.||.+|++.+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 13 TATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp CCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred cccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 35688886555432 477899999999999977543
No 272
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.24 E-value=39 Score=20.64 Aligned_cols=28 Identities=21% Similarity=0.746 Sum_probs=20.2
Q ss_pred CccccccccccccCCCeecCCCCcchHh
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCK 50 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~ 50 (210)
....|..|...+.-.++.=.||..||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred cCCcChhhCCccCccCEEeecCCEeccc
Confidence 4568999987655434555899999974
No 273
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=29.17 E-value=24 Score=22.06 Aligned_cols=29 Identities=3% Similarity=0.107 Sum_probs=12.8
Q ss_pred cEEEEc-chHHHHHHHHHHHHhCCceEEEe
Q 028376 142 KILVFS-SWNDVLDVLEHAFIANNITCIKM 170 (210)
Q Consensus 142 K~iVFS-Qf~~~L~li~~~L~~~gi~~~~~ 170 (210)
++++|+ .|-..-..+...|++.|+.|..+
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~~i~~~~v 36 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKKGVKYTDI 36 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHHTCCEEEE
T ss_pred eEEEEECCCChhHHHHHHHHHHcCCCcEEE
Confidence 344444 23344444444444445544443
No 274
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=28.92 E-value=65 Score=25.58 Aligned_cols=29 Identities=3% Similarity=0.048 Sum_probs=12.1
Q ss_pred CCceEEEeeCCCCCCcchhhHhhhHHHHH
Q 028376 163 NNITCIKMKGENHKLPSANLQHRNALQKE 191 (210)
Q Consensus 163 ~gi~~~~~~G~m~~~~~~~~~~R~~~l~~ 191 (210)
+|+.-+..-|+..+...|+.++|.++++.
T Consensus 37 ~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~ 65 (293)
T 1f6k_A 37 MKVDGLYVGGSTGENFMLSTEEKKEIFRI 65 (293)
T ss_dssp SCCSEEEESSGGGTGGGSCHHHHHHHHHH
T ss_pred CCCcEEEeCccccchhhCCHHHHHHHHHH
Confidence 34433334444444444444444444433
No 275
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.90 E-value=22 Score=21.73 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=6.7
Q ss_pred cccccccccccc
Q 028376 24 EETCPICQEKLG 35 (210)
Q Consensus 24 ~~~C~iC~~~~~ 35 (210)
...|+.|...+.
T Consensus 11 ~~~C~~C~~~I~ 22 (77)
T 1g47_A 11 SATCERCKGGFA 22 (77)
T ss_dssp CCBCSSSCCBCC
T ss_pred CCCchhcCCccC
Confidence 345666665553
No 276
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=28.87 E-value=7 Score=22.43 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=8.0
Q ss_pred ccccccCCcccc
Q 028376 69 EWVMCPTCRQRT 80 (210)
Q Consensus 69 ~~~~CP~Cr~~~ 80 (210)
...+||.|+-.+
T Consensus 22 P~IrCpyCGyri 33 (48)
T 4ayb_P 22 PGVRCPYCGYKI 33 (48)
T ss_dssp SSSCCTTTCCSC
T ss_pred CCcccCccCcEE
Confidence 456788887643
No 277
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.80 E-value=1.3e+02 Score=19.87 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=33.0
Q ss_pred cEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 142 KILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 142 K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
-++|||.-...|.......++||++...... +++-...|++.-+
T Consensus 4 vivvfstdeetlrkfkdiikkngfkvrtvrs---------pqelkdsieelvk 47 (134)
T 2l69_A 4 VIVVFSTDEETLRKFKDIIKKNGFKVRTVRS---------PQELKDSIEELVK 47 (134)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCEEEEECS---------HHHHHHHHHHHTT
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCceEEEecC---------HHHHHHHHHHHHH
Confidence 4789999999999999999999998655533 5555556665543
No 278
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=28.79 E-value=1.5e+02 Score=26.14 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=43.7
Q ss_pred cCCC-CchHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEee
Q 028376 117 QGSY-GTKIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMK 171 (210)
Q Consensus 117 ~~~~-SsKi~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~ 171 (210)
.|.| +-|...+++.|..+... +.+++|=+.-....|-+-..|...+++.+|+-
T Consensus 211 ~GPPGTGKT~ti~~~I~~l~~~--~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 211 HGPPGTGKTTTVVEIILQAVKQ--GLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred ECCCCCCHHHHHHHHHHHHHhC--CCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 4545 46888888888877754 67999999999999999999999999999983
No 279
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.49 E-value=36 Score=22.83 Aligned_cols=32 Identities=19% Similarity=0.673 Sum_probs=21.9
Q ss_pred cccccccccccC--CCeecCCCCcchHhhHHHHH
Q 028376 25 ETCPICQEKLGN--QKMVFQCGHFTCCKCFFAMT 56 (210)
Q Consensus 25 ~~C~iC~~~~~~--~~~~~~CgH~fC~~C~~~~~ 56 (210)
+.|..|..++.. ......=|.+||..|..+.+
T Consensus 31 F~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f 64 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLG 64 (114)
T ss_dssp CCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHH
T ss_pred CcccccCCchhcCCCeeEEECCeeechHHHHHHh
Confidence 456777777753 23455668889999988764
No 280
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=28.48 E-value=8.8 Score=23.11 Aligned_cols=51 Identities=18% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccc
Q 028376 21 KADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQR 79 (210)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 79 (210)
+.+...|.+|.+.- .-..--.|...|+..|+..-+.. . ..+.-.||.|...
T Consensus 6 d~~~~~C~vC~~~g-~ll~Cd~C~~~fH~~Cl~ppl~~-~------p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDGG-ELLCCDTCPSSYHIHCLNPPLPE-I------PNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCCS-SCBCCSSSCCCBCSSSSSSCCSS-C------CSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCCC-CEEEcCCCCHHHcccccCCCcCc-C------CCCccCChhhcCc
Confidence 34567799998632 11122367778888888753211 0 2334569999764
No 281
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=28.46 E-value=27 Score=26.08 Aligned_cols=56 Identities=23% Similarity=0.477 Sum_probs=29.8
Q ss_pred cccccccccccCCC----ee--cCCCCcchHhhHHHHHHHhhhccccCCCccccccCCcccc
Q 028376 25 ETCPICQEKLGNQK----MV--FQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQRT 80 (210)
Q Consensus 25 ~~C~iC~~~~~~~~----~~--~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 80 (210)
..|++|..+..+.. ++ -.|...|+..|+.-.-+....-..........||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 46999987655432 33 3677788888875321100000000001256899998753
No 282
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=28.44 E-value=14 Score=27.06 Aligned_cols=53 Identities=17% Similarity=0.453 Sum_probs=30.8
Q ss_pred CCCCccccccccccccCCC-ee--cCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccc
Q 028376 20 SKADEETCPICQEKLGNQK-MV--FQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQR 79 (210)
Q Consensus 20 ~~~~~~~C~iC~~~~~~~~-~~--~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 79 (210)
.+.+...| +|..+-.... ++ -.|...|+..|+.-...... ....-.||.|+..
T Consensus 4 ~~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~------~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 4 GSDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAE------LIDEYVCPQCQST 59 (174)
T ss_dssp ---CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHT------TCSSCCCHHHHHH
T ss_pred CCCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhcc------CccCeecCCCcch
Confidence 34566789 9987643222 22 37788899999853211100 2456689999874
No 283
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.19 E-value=57 Score=22.23 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=26.7
Q ss_pred cEEEEc-chHHHHHHHHHHHHhCCceEEEeeCC
Q 028376 142 KILVFS-SWNDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 142 K~iVFS-Qf~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
+++||+ .|-..-..+...|...|+.|..++-.
T Consensus 28 ~vvvf~~~~Cp~C~~~~~~L~~~~i~~~~vdid 60 (130)
T 2cq9_A 28 CVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELD 60 (130)
T ss_dssp SEEEEECSSCSHHHHHHHHHHHHTCCCEEEETT
T ss_pred cEEEEEcCCChHHHHHHHHHHHcCCCcEEEECc
Confidence 788887 47788888999999999999888765
No 284
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=28.10 E-value=22 Score=22.11 Aligned_cols=31 Identities=16% Similarity=0.488 Sum_probs=19.0
Q ss_pred cccccccccccCCCeecCCCCcchHhhHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~ 55 (210)
+.|..|...+........=+.+||..|..+.
T Consensus 35 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 65 (81)
T 1a7i_A 35 FLCMVCRKNLDSTTVAIHDAEVYCKSCYGKK 65 (81)
T ss_dssp EECSSSCCEECSSCCEEETTEEECSHHHHHH
T ss_pred CccCCCCCCCCCCCeEeeCCEEECHHHHHHH
Confidence 3456666666543344456677888887655
No 285
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=27.92 E-value=27 Score=21.26 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=29.1
Q ss_pred CCccccccccccccCCCee---c-CCCCcchHhhHHHHHHHhhhccccCCCccccccCCc
Q 028376 22 ADEETCPICQEKLGNQKMV---F-QCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCR 77 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~---~-~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr 77 (210)
.....|++|..+..+.... - .|.-.|+..|+.-..+... .........-.||.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~-~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYG-LLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHH-HHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHH-HhhccCCCcEECcCcc
Confidence 3456899999876543222 2 6777888899864322110 0000013356688774
No 286
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=27.73 E-value=46 Score=23.22 Aligned_cols=38 Identities=5% Similarity=-0.037 Sum_probs=26.3
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCce-EEEeeCCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNIT-CIKMKGENH 175 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~-~~~~~G~m~ 175 (210)
+++.++|||.+--.--......|...|+. ...|+|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 34677888877443345677889999995 777899974
No 287
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.54 E-value=46 Score=20.95 Aligned_cols=29 Identities=24% Similarity=0.617 Sum_probs=20.6
Q ss_pred CCccccccccccccCCCeecCCCCcchHh
Q 028376 22 ADEETCPICQEKLGNQKMVFQCGHFTCCK 50 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~~~~~~~CgH~fC~~ 50 (210)
.....|..|...+.-.++.=.||..||..
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred ccCccchhhcCcccccceEeccCCEeccc
Confidence 34568999987655434555899999974
No 288
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=27.34 E-value=35 Score=24.09 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=30.8
Q ss_pred hHHHHHh-cCCCCccccccccccccCCCeecCCCCcchHhhHHHH
Q 028376 12 TKHRIES-LSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 12 ~~~~~~~-l~~~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~ 55 (210)
.+.++.. ++..+...|.-|...-. ..+-+.-|-++|..|-.-+
T Consensus 14 ~~~~l~~L~~~p~N~~CaDCg~~~P-~WaS~n~GvfiC~~CsgiH 57 (134)
T 2iqj_A 14 YQAVLANLLLEEDNKFCADCQSKGP-RWASWNIGVFICIRCAGIH 57 (134)
T ss_dssp CHHHHHHHTTSGGGGBCTTTCCBSC-CEEETTTTEEECHHHHHHH
T ss_pred HHHHHHHHHcCcCCCcCCcCcCCCC-CeEEecCCEEEhHhhhHHH
Confidence 3455554 44567789999987543 3577788999999998765
No 289
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=27.29 E-value=42 Score=22.67 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=26.2
Q ss_pred CCCCcEEEEcchHHH--HHHHHHHHHhCCceEEEeeCCC
Q 028376 138 DPKAKILVFSSWNDV--LDVLEHAFIANNITCIKMKGEN 174 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~--L~li~~~L~~~gi~~~~~~G~m 174 (210)
+++.++|||.+--.- -......|...|+....|+|++
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 345667777664332 4667888999999977778984
No 290
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=27.07 E-value=1e+02 Score=24.34 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=25.0
Q ss_pred HhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 161 IANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 161 ~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
-.+|+.-+..-|+..+...|+.++|.++++.-..
T Consensus 29 i~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~ 62 (286)
T 2r91_A 29 TSKGVDVVFVAGTTGLGPALSLQEKMELTDAATS 62 (286)
T ss_dssp HHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHH
T ss_pred HHCCCCEEEECccccChhhCCHHHHHHHHHHHHH
Confidence 3467777777788777778888888887776654
No 291
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=27.05 E-value=1e+02 Score=24.35 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=20.7
Q ss_pred hCCceEEEeeCCCCCCcchhhHhhhHHHHHHh
Q 028376 162 ANNITCIKMKGENHKLPSANLQHRNALQKELT 193 (210)
Q Consensus 162 ~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~ 193 (210)
.+|+.-+-.-|+..+...|+.++|.++++.-.
T Consensus 32 ~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~ 63 (289)
T 2yxg_A 32 ENGVSGIVAVGTTGESPTLSHEEHKKVIEKVV 63 (289)
T ss_dssp HTTCSEEEESSTTTTGGGSCHHHHHHHHHHHH
T ss_pred HCCCCEEEECccccChhhCCHHHHHHHHHHHH
Confidence 35666666667666666677777766666544
No 292
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=26.91 E-value=65 Score=22.36 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=27.6
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCce-EEEeeCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNIT-CIKMKGEN 174 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~-~~~~~G~m 174 (210)
+++.++|||..--..-......|...|+. ...|+|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 44567888887655566788899999996 55678874
No 293
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=26.90 E-value=1.4e+02 Score=22.46 Aligned_cols=25 Identities=0% Similarity=0.072 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHhCCceEEEeeCC
Q 028376 149 WNDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 149 f~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
|..++.-++.++.++|+....+...
T Consensus 22 ~~~~~~gi~~~~~~~g~~~~~~~~~ 46 (276)
T 3jy6_A 22 STELFKGISSILESRGYIGVLFDAN 46 (276)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4555555555555555555444433
No 294
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.75 E-value=49 Score=20.22 Aligned_cols=28 Identities=25% Similarity=0.610 Sum_probs=19.6
Q ss_pred CccccccccccccCCCeecCCCCcchHh
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCK 50 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~ 50 (210)
....|..|...+.-.++.=.||..||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeEeecCCEeccc
Confidence 3467999987655333555899999864
No 295
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.64 E-value=28 Score=21.97 Aligned_cols=27 Identities=26% Similarity=0.737 Sum_probs=19.0
Q ss_pred ccccccccccccCCCeecCCCCcchHh
Q 028376 24 EETCPICQEKLGNQKMVFQCGHFTCCK 50 (210)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~~CgH~fC~~ 50 (210)
...|..|...+.-.++.=.||..||..
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred CCcChhhCCcccccCeecCCCCEechh
Confidence 457999987654334556799999863
No 296
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=26.45 E-value=1e+02 Score=20.42 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=28.8
Q ss_pred cEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 142 KILVFSSWNDVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 142 K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
|-|+-+...-.+.+++..|+.+||.++..|..|+
T Consensus 24 ~eL~ra~d~v~a~~~k~LLe~aGI~~fv~De~ms 57 (97)
T 2hfv_A 24 RELLRTNDAVLLSAVGALLDGADIGHLVLDQNMS 57 (97)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTTCCEECCSCCCC
T ss_pred eeeeecCCHHHHHHHHHHHHhCCCCEEEcCCcch
Confidence 6778889999999999999999999887766543
No 297
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.32 E-value=24 Score=21.62 Aligned_cols=10 Identities=20% Similarity=0.776 Sum_probs=5.1
Q ss_pred cccccccccc
Q 028376 26 TCPICQEKLG 35 (210)
Q Consensus 26 ~C~iC~~~~~ 35 (210)
.|..|..++.
T Consensus 7 ~C~~C~~~I~ 16 (76)
T 1x68_A 7 GCVACSKPIS 16 (76)
T ss_dssp CCTTTCCCCC
T ss_pred CCccCCCccc
Confidence 4555555444
No 298
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=26.19 E-value=1.6e+02 Score=21.93 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHhCCceEEEeeC
Q 028376 149 WNDVLDVLEHAFIANNITCIKMKG 172 (210)
Q Consensus 149 f~~~L~li~~~L~~~gi~~~~~~G 172 (210)
|..+++-++.+++++|+....+..
T Consensus 17 ~~~~~~gi~~~a~~~g~~~~~~~~ 40 (272)
T 3o74_A 17 YARIAKQLEQGARARGYQLLIASS 40 (272)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeC
Confidence 444555555555555555544443
No 299
>1xqo_A 8-oxoguanine DNA glycosylase; helix-hairpin-helix, archaea, P.aerophilum, PA-AGOG native, DNA repair, lyase; 1.03A {Pyrobaculum aerophilum} SCOP: a.96.1.6 PDB: 1xqp_A*
Probab=25.85 E-value=13 Score=29.30 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHH
Q 028376 123 KIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAF 160 (210)
Q Consensus 123 Ki~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L 160 (210)
-+..|.+.|..+...++..|+|||+ ..|+-....+.
T Consensus 121 dl~~l~~~LA~~l~s~~~~KTIVFA--vKM~~Ya~r~~ 156 (256)
T 1xqo_A 121 DLGLTLRQLSHIVGARREQKTLVFT--IKILNYAYMCS 156 (256)
T ss_dssp CHHHHHHHHHHHHTSCTTSHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcceeeeH--HHHHHHHHHHH
Confidence 4888999999999999999999997 45555544444
No 300
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.84 E-value=35 Score=20.34 Aligned_cols=53 Identities=17% Similarity=0.439 Sum_probs=30.9
Q ss_pred CCCccccccccccccCCC-ee--cCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccc
Q 028376 21 KADEETCPICQEKLGNQK-MV--FQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQR 79 (210)
Q Consensus 21 ~~~~~~C~iC~~~~~~~~-~~--~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 79 (210)
+.+...|++|..+..+.. ++ -.|...|+..|+.-.... . . ......||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~-~-~----~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPAR-A-E----HIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTG-G-G----GCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhH-h-c----CCCcEECCCCcCc
Confidence 345678999987764222 33 367778888887532110 0 0 1245678888653
No 301
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=25.77 E-value=37 Score=23.28 Aligned_cols=37 Identities=5% Similarity=0.052 Sum_probs=27.5
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCce-EEEeeCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNIT-CIKMKGEN 174 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~-~~~~~G~m 174 (210)
+++.++|||.+--.--......|...|+. ...|+|++
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 34667888877655555678889999996 77789984
No 302
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=25.69 E-value=1.6e+02 Score=21.04 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCC
Q 028376 124 IEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 124 i~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
.+.+.+.|.. .... ...+.|..-.......++..|...||++..+++.
T Consensus 47 ~~~i~~~I~~-~~~g-~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~ 94 (174)
T 3dmn_A 47 VDQVVDQLAM-NDSE-RDTTAIIGKSLAECEALTKALKARGEQVTLIQTE 94 (174)
T ss_dssp HHHHHHHHHH-HHHT-TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSC
T ss_pred HHHHHHHHHH-hccC-CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccc
Confidence 4456666665 3333 3455555566677788999999999998777654
No 303
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=25.60 E-value=1.6e+02 Score=22.20 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=4.6
Q ss_pred hCCceEEEeeC
Q 028376 162 ANNITCIKMKG 172 (210)
Q Consensus 162 ~~gi~~~~~~G 172 (210)
..++.-+-+.+
T Consensus 69 ~~~vdgiIi~~ 79 (298)
T 3tb6_A 69 SQHIDGLIVEP 79 (298)
T ss_dssp HTCCSEEEECC
T ss_pred HCCCCEEEEec
Confidence 34444444433
No 304
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=25.55 E-value=50 Score=22.64 Aligned_cols=37 Identities=5% Similarity=0.064 Sum_probs=27.0
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCce-EEEeeCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNIT-CIKMKGEN 174 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~-~~~~~G~m 174 (210)
+++.++|||..--.--......|...|+. ...|+|++
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 126 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSM 126 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHH
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcH
Confidence 44567777777655556778889999996 56779984
No 305
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=25.37 E-value=37 Score=23.11 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=27.2
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCce-EEEeeCCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNIT-CIKMKGENH 175 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~-~~~~~G~m~ 175 (210)
+++.++|||..--.--......|...|+. ...|+|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 45677888877544455677788888986 566899943
No 306
>1xg7_A Hypothetical protein; southeast collaboratory for structural genomics, secsg, hyperthermophIle, pyrococcus FU protein structure initiative; 1.88A {Pyrococcus furiosus} SCOP: a.96.1.6
Probab=25.24 E-value=14 Score=29.03 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhC
Q 028376 123 KIEAVTRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIAN 163 (210)
Q Consensus 123 Ki~al~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~ 163 (210)
-+..|.+.|......++..|.|||+ ...+..++...
T Consensus 133 dl~~l~~~LA~~l~s~~~~KTIVFA-----vKM~~Ya~r~~ 168 (250)
T 1xg7_A 133 NMKMLWKALIKIMGSREDSKTIVFT-----VKMFGYASRIA 168 (250)
T ss_dssp THHHHHHHHHHHHTCCTTCHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcceeehH-----HHHHHHHHHHH
Confidence 4778888888888899999999997 34455555544
No 307
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=25.17 E-value=1.1e+02 Score=18.90 Aligned_cols=45 Identities=20% Similarity=0.062 Sum_probs=26.4
Q ss_pred CCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 140 KAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 140 ~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
+..+..++.....+..+.. ..+..+-+|-.++ ...-...++..+.
T Consensus 25 g~~v~~~~~~~~~~~~l~~----~~~dlii~d~~~~------~~~~~~~~~~l~~ 69 (119)
T 2j48_A 25 GFKVIWLVDGSTALDQLDL----LQPIVILMAWPPP------DQSCLLLLQHLRE 69 (119)
T ss_dssp TCEEEEESCHHHHHHHHHH----HCCSEEEEECSTT------CCTHHHHHHHHHH
T ss_pred CcEEEEecCHHHHHHHHHh----cCCCEEEEecCCC------CCCHHHHHHHHHh
Confidence 4577777777777766543 3566666666654 2233445555554
No 308
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=25.15 E-value=36 Score=26.96 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=31.6
Q ss_pred chHHHHHhcC-CCCccccccccccccCCCeecCCCCcchHhhHHHH
Q 028376 11 STKHRIESLS-KADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAM 55 (210)
Q Consensus 11 ~~~~~~~~l~-~~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~ 55 (210)
..+.++..++ ..+...|.-|...- +.+.-+..|.++|.+|--..
T Consensus 28 ~~~~~~~~~~~~~~n~~c~dc~~~~-p~w~s~~~g~~~c~~cs~~h 72 (301)
T 2b0o_E 28 LTKLLIAEVKSRPGNSQCCDCGAAD-PTWLSTNLGVLTCIQCSGVH 72 (301)
T ss_dssp HHHHHHHHHHTSTTTTBCTTTCCBS-CCEEETTTTEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCCCCCCCC-CCeEEeecCeEEcHHHHHHH
Confidence 3445555554 45778999998754 34688899999999996644
No 309
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=24.89 E-value=2.5e+02 Score=23.21 Aligned_cols=55 Identities=13% Similarity=0.188 Sum_probs=36.4
Q ss_pred CcEEEEcc---hHH--HHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 141 AKILVFSS---WND--VLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 141 ~K~iVFSQ---f~~--~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
.|++|.+. +.. +++.+...|+.+|+.+..|+|..++ -+...=.++++.+....+|
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~---p~~~~v~~~~~~~~~~~~D 103 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPN---PVLSKVHEAVEVAKKEKVE 103 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSS---CBHHHHHHHHHHHHHTTCS
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCC---CCHHHHHHHHHHHHhcCCC
Confidence 57777653 444 6888999999999999989884331 1234445566666654554
No 310
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.89 E-value=55 Score=21.20 Aligned_cols=30 Identities=23% Similarity=0.531 Sum_probs=21.0
Q ss_pred CCccccccccccccC-CCeecCCCCcchHhh
Q 028376 22 ADEETCPICQEKLGN-QKMVFQCGHFTCCKC 51 (210)
Q Consensus 22 ~~~~~C~iC~~~~~~-~~~~~~CgH~fC~~C 51 (210)
.....|..|...+.- .++.=.||..||..-
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~H 53 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFECRCGNNFCASH 53 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEECTTCCEECTTT
T ss_pred ccCccchhhCCeecccCCeEcCCCCEecccC
Confidence 345789999876553 135668999999743
No 311
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=24.83 E-value=1.2e+02 Score=24.22 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=11.9
Q ss_pred CceEEEeeCCCCCCcchhhHhhhHHHHH
Q 028376 164 NITCIKMKGENHKLPSANLQHRNALQKE 191 (210)
Q Consensus 164 gi~~~~~~G~m~~~~~~~~~~R~~~l~~ 191 (210)
|+.-+..-|+..+...|+.++|.++++.
T Consensus 45 Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~ 72 (303)
T 2wkj_A 45 GIDGLYVGGSTGEAFVQSLSEREQVLEI 72 (303)
T ss_dssp TCSEEEESSTTTTGGGSCHHHHHHHHHH
T ss_pred CCCEEEECeeccChhhCCHHHHHHHHHH
Confidence 3333334444444444444444444443
No 312
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=24.69 E-value=30 Score=24.30 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=18.8
Q ss_pred CccccccccccccCCCeecCCCCcchHh
Q 028376 23 DEETCPICQEKLGNQKMVFQCGHFTCCK 50 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~~~CgH~fC~~ 50 (210)
+...|..|...-. -.+-+.|||+.|..
T Consensus 33 ~~~~C~~C~~~~~-LwlCL~CG~vgCgr 59 (129)
T 2g45_A 33 CGWKCSKCDMREN-LWLNLTDGSILCGR 59 (129)
T ss_dssp CBCCCSSSSCCSS-EEEETTTCCEEECC
T ss_pred CCCcCccccCcCc-eEEeccCCccccCc
Confidence 3457999976533 35778999998843
No 313
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=24.62 E-value=1.7e+02 Score=22.07 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHhCCceEEEee
Q 028376 149 WNDVLDVLEHAFIANNITCIKMK 171 (210)
Q Consensus 149 f~~~L~li~~~L~~~gi~~~~~~ 171 (210)
|..++.-++.++.++|+....++
T Consensus 23 ~~~~~~gi~~~a~~~g~~~~~~~ 45 (293)
T 3l6u_A 23 AQRLINAFKAEAKANKYEALVAT 45 (293)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEC
Confidence 34444444444444444444433
No 314
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=24.56 E-value=36 Score=23.73 Aligned_cols=32 Identities=22% Similarity=0.570 Sum_probs=20.7
Q ss_pred cCCCCcccccccccc-------------ccCCCeecCCCCcchHh
Q 028376 19 LSKADEETCPICQEK-------------LGNQKMVFQCGHFTCCK 50 (210)
Q Consensus 19 l~~~~~~~C~iC~~~-------------~~~~~~~~~CgH~fC~~ 50 (210)
+.......|..|... ...-.+-+.|||+.|..
T Consensus 23 ~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr 67 (126)
T 2i50_A 23 LVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGR 67 (126)
T ss_dssp HSSCCSSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECT
T ss_pred ccCCCCCcCccccccccccccccccccccccceeeeeCCccccCC
Confidence 333344679999753 12224668999999954
No 315
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=24.23 E-value=1.8e+02 Score=22.05 Aligned_cols=44 Identities=5% Similarity=0.051 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 149 WNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 149 f~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
|..++.-++.+++++|+....++.... ...-.+.++.+.....+
T Consensus 23 ~~~~~~gi~~~a~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~~vd 66 (291)
T 3egc_A 23 FAEVASGVESEARHKGYSVLLANTAED------IVREREAVGQFFERRVD 66 (291)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTC------HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCC------HHHHHHHHHHHHHCCCC
Confidence 566666777777777776666554432 44445556666544444
No 316
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=24.08 E-value=1.7e+02 Score=21.84 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 149 WNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 149 f~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
|..++.-++.++.++|+....+..... ...-...++.+.....+
T Consensus 23 ~~~~~~gi~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~~~d 66 (277)
T 3e61_A 23 FTLIARGVEDVALAHGYQVLIGNSDND------IKKAQGYLATFVSHNCT 66 (277)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECTTC------HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCC------HHHHHHHHHHHHhCCCC
Confidence 555566666666666666555544322 33334455555443333
No 317
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=24.03 E-value=1.5e+02 Score=22.89 Aligned_cols=44 Identities=5% Similarity=0.048 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCC
Q 028376 149 WNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTRHMPS 198 (210)
Q Consensus 149 f~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~ 198 (210)
|..++.-++.+++++|+....+..... ...-.+.++.|....++
T Consensus 18 ~~~~~~gi~~~a~~~g~~~~~~~~~~~------~~~~~~~i~~~~~~~vd 61 (330)
T 3uug_A 18 WIDDGNNIVKQLQEAGYKTDLQYADDD------IPNQLSQIENMVTKGVK 61 (330)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTC------HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHcCCEEEEeeCCCC------HHHHHHHHHHHHHcCCC
Confidence 555555666666666665554443322 34444455555443333
No 318
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=24.01 E-value=61 Score=21.03 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=22.1
Q ss_pred CccccccccccccCCCee---cCCCCcchHhhHHHH
Q 028376 23 DEETCPICQEKLGNQKMV---FQCGHFTCCKCFFAM 55 (210)
Q Consensus 23 ~~~~C~iC~~~~~~~~~~---~~CgH~fC~~C~~~~ 55 (210)
.+..|.||..--.. .+ -.|+-+|+..|+.+.
T Consensus 14 ~D~~C~VC~~~t~~--~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWTAE--SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCCSS--CCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccccccc--ceeccccccccccHhhcccc
Confidence 56789999743222 33 357899999999985
No 319
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=23.76 E-value=16 Score=23.91 Aligned_cols=53 Identities=19% Similarity=0.372 Sum_probs=32.4
Q ss_pred cCCCCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccc
Q 028376 19 LSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQR 79 (210)
Q Consensus 19 l~~~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 79 (210)
..+.+...|.+|...- .-..--.|--.|...|+.+-+.. . ..+.-.||.|...
T Consensus 20 ~~d~n~~~C~vC~~~g-~LL~CD~C~~~fH~~Cl~PpL~~-~------P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 20 TLDDSATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQD-V------PGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCCC-C------CSSSCCCCSCCCC
T ss_pred ccCCCCCcCcCcCCCC-CEEECCCCCCceecccCCCCCCC-C------cCCCcCCccccCC
Confidence 4456677899998642 21122477778888888654311 0 2344569999753
No 320
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=23.65 E-value=1e+02 Score=19.44 Aligned_cols=32 Identities=6% Similarity=0.008 Sum_probs=21.7
Q ss_pred cEEEEcc-hHHHHHHHHHHHHhCCce-EEEeeCC
Q 028376 142 KILVFSS-WNDVLDVLEHAFIANNIT-CIKMKGE 173 (210)
Q Consensus 142 K~iVFSQ-f~~~L~li~~~L~~~gi~-~~~~~G~ 173 (210)
++++|+. |-..-+.+...|++.++. |..+|-.
T Consensus 2 ~vv~f~a~~C~~C~~~~~~L~~~~~~~~~~vdid 35 (87)
T 1ttz_A 2 ALTLYQRDDCHLCDQAVEALAQARAGAFFSVFID 35 (87)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHTTCCCEEEEECT
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHhheEEEECC
Confidence 3555554 777777888888887776 6666554
No 321
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=23.59 E-value=1.3e+02 Score=23.73 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=17.5
Q ss_pred CCceEEEeeCCCCCCcchhhHhhhHHHHHHh
Q 028376 163 NNITCIKMKGENHKLPSANLQHRNALQKELT 193 (210)
Q Consensus 163 ~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~ 193 (210)
+|+.-+..-|+..+...|+.++|.++++.-.
T Consensus 34 ~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~ 64 (292)
T 2ojp_A 34 SGTSAIVSVGTTGESATLNHDEHADVVMMTL 64 (292)
T ss_dssp HTCCEEEESSTTTTGGGSCHHHHHHHHHHHH
T ss_pred cCCCEEEECccccchhhCCHHHHHHHHHHHH
Confidence 3555555556655555666666666555543
No 322
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=23.52 E-value=1.9e+02 Score=21.86 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=14.0
Q ss_pred CCcEEEEcc---hHHHHHHHHHHHHhCCceEEEeeC
Q 028376 140 KAKILVFSS---WNDVLDVLEHAFIANNITCIKMKG 172 (210)
Q Consensus 140 ~~K~iVFSQ---f~~~L~li~~~L~~~gi~~~~~~G 172 (210)
+.+++++.. .......++..+ ..++.-+-+.+
T Consensus 32 g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~ 66 (290)
T 2fn9_A 32 GYEATIFDSQNDTAKESAHFDAII-AAGYDAIIFNP 66 (290)
T ss_dssp TCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEec
Confidence 445555532 122334444444 34555444444
No 323
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=23.42 E-value=46 Score=23.52 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=27.5
Q ss_pred CCcEEEEcchH---------HHHHHHHHHHHhCCceEEEeeCCC
Q 028376 140 KAKILVFSSWN---------DVLDVLEHAFIANNITCIKMKGEN 174 (210)
Q Consensus 140 ~~K~iVFSQf~---------~~L~li~~~L~~~gi~~~~~~G~m 174 (210)
+..+|||..-. ....++...|...|+..+.|+|++
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 56788887755 356778889999999988889984
No 324
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.29 E-value=74 Score=19.47 Aligned_cols=32 Identities=19% Similarity=0.438 Sum_probs=19.2
Q ss_pred cccccccccccC-CCee-cCCCCcchHhhHHHHH
Q 028376 25 ETCPICQEKLGN-QKMV-FQCGHFTCCKCFFAMT 56 (210)
Q Consensus 25 ~~C~iC~~~~~~-~~~~-~~CgH~fC~~C~~~~~ 56 (210)
+.|..|...+.. .... ..=|.++|..|..+.+
T Consensus 42 F~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 42 FACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred CCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 456666666643 2233 2567788888877654
No 325
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=23.10 E-value=1.5e+02 Score=25.84 Aligned_cols=51 Identities=20% Similarity=0.161 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcC-CCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 124 IEAVTRRILWIKSTD-PKAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 124 i~al~~~L~~~~~~~-~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
.+.+.+.|..+.... +...+.|..-.......++.+|.++||+|... |+.+
T Consensus 330 ~~~ia~~I~~l~~~g~~~~diaVL~r~~~~~~~l~~~l~~~~Ip~~~~-~~~~ 381 (647)
T 3lfu_A 330 ARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIY-GGMR 381 (647)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHHHHTTCCEEES-SSCC
T ss_pred HHHHHHHHHHHHHcCCCccCEEEEEeCchhHHHHHHHHHHCCCCEEEe-CCCC
Confidence 455666666655432 23445444444678899999999999999754 5544
No 326
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=22.95 E-value=13 Score=27.93 Aligned_cols=48 Identities=21% Similarity=0.415 Sum_probs=29.5
Q ss_pred ccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccc
Q 028376 24 EETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQR 79 (210)
Q Consensus 24 ~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 79 (210)
...|.+|...-. -..--.|-..|+..|+.+-+.. . ..+.-.||.|+..
T Consensus 2 ~~~C~~C~~~g~-ll~Cd~C~~~~H~~Cl~p~l~~-~------p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGD-LVMCNQCEFCFHLDCHLPALQD-V------PGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSS-CCCCTTTCCBCCSTTSTTCCSS-C------CCTTCCTTTTSCS
T ss_pred CCcCccCCCCCc-eeECCCCCchhccccCCCCccc-C------CCCCCCCcCccCC
Confidence 457999986422 1223477788888898653211 0 2344579999765
No 327
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.94 E-value=1.9e+02 Score=22.22 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHhCCceEEEeeC
Q 028376 149 WNDVLDVLEHAFIANNITCIKMKG 172 (210)
Q Consensus 149 f~~~L~li~~~L~~~gi~~~~~~G 172 (210)
|..++.-++.++++.|+....+..
T Consensus 17 ~~~~~~gi~~~a~~~g~~~~~~~~ 40 (313)
T 3m9w_A 17 WQKDRDIFVKKAESLGAKVFVQSA 40 (313)
T ss_dssp THHHHHHHHHHHHHTSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEECC
Confidence 455555555555555555444443
No 328
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=22.85 E-value=1.9e+02 Score=22.21 Aligned_cols=45 Identities=7% Similarity=0.023 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHhCCc------eEEEeeCCCCCCcchhhHhhhHHHHHHhhcCCCC
Q 028376 149 WNDVLDVLEHAFIANNI------TCIKMKGENHKLPSANLQHRNALQKELTRHMPSS 199 (210)
Q Consensus 149 f~~~L~li~~~L~~~gi------~~~~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~~ 199 (210)
|..+++-++..|.++|+ .+..++.... ..+-...++.|....+|+
T Consensus 22 ~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~------~~~~~~~~~~l~~~~vDg 72 (302)
T 2qh8_A 22 LDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGN------PAIAVQIARQFVGENPDV 72 (302)
T ss_dssp HHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTC------HHHHHHHHHHHHHTCCSE
T ss_pred HHHHHHHHHHHHHHcCCCCCCceEEEEecCCCC------HHHHHHHHHHHHhCCCCE
Confidence 55666666666766666 3333333322 444445566665544544
No 329
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=22.80 E-value=1.2e+02 Score=19.48 Aligned_cols=31 Identities=13% Similarity=-0.025 Sum_probs=14.6
Q ss_pred CcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCC
Q 028376 141 AKILVFSSWNDVLDVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 141 ~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~ 175 (210)
..+++++.....+..+ ....+..+-+|-.++
T Consensus 32 ~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~ 62 (130)
T 3eod_A 32 ATTVLAADGVDALELL----GGFTPDLMICDIAMP 62 (130)
T ss_dssp CEEEEESCHHHHHHHH----TTCCCSEEEECCC--
T ss_pred ceEEEeCCHHHHHHHH----hcCCCCEEEEecCCC
Confidence 4455555555554443 344455555555443
No 330
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=22.77 E-value=1.8e+02 Score=21.98 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhCCceEEEee
Q 028376 150 NDVLDVLEHAFIANNITCIKMK 171 (210)
Q Consensus 150 ~~~L~li~~~L~~~gi~~~~~~ 171 (210)
..++.-++.+++++|+....++
T Consensus 21 ~~~~~gi~~~a~~~g~~~~~~~ 42 (291)
T 3l49_A 21 LKAYQAQIAEIERLGGTAIALD 42 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEc
Confidence 4444445555555555444443
No 331
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=22.47 E-value=2.2e+02 Score=22.18 Aligned_cols=56 Identities=11% Similarity=0.098 Sum_probs=41.6
Q ss_pred cCCCCcEEEEcchHHHHHHHHHHHHhCCceEE-EeeCCCCCCcchhhHhhhHHHHHHhhcCCCCCCccc
Q 028376 137 TDPKAKILVFSSWNDVLDVLEHAFIANNITCI-KMKGENHKLPSANLQHRNALQKELTRHMPSSQSQSL 204 (210)
Q Consensus 137 ~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~-~~~G~m~~~~~~~~~~R~~~l~~F~~~~p~~~~~~~ 204 (210)
.....+++|.---.....++...|+..|+... ... .-..+++.+....|+...-++
T Consensus 157 ~~l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~------------~g~eAl~~~~~~~~dlvl~D~ 213 (286)
T 3n0r_A 157 AELATEVLIIEDEPVIAADIEALVRELGHDVTDIAA------------TRGEALEAVTRRTPGLVLADI 213 (286)
T ss_dssp TSCCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEES------------SHHHHHHHHHHCCCSEEEEES
T ss_pred ccCCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeC------------CHHHHHHHHHhCCCCEEEEcC
Confidence 44567899999999999999999999998875 332 234577777776777655443
No 332
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=22.45 E-value=1.6e+02 Score=21.72 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHhCCceEEEee
Q 028376 149 WNDVLDVLEHAFIANNITCIKMK 171 (210)
Q Consensus 149 f~~~L~li~~~L~~~gi~~~~~~ 171 (210)
|..++.-++.+++++|+....+.
T Consensus 17 ~~~~~~gi~~~~~~~g~~~~~~~ 39 (255)
T 1byk_A 17 ENLAVQTMLPAFYEQGYDPIMME 39 (255)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEe
Confidence 44555555555555555544443
No 333
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=22.32 E-value=94 Score=20.01 Aligned_cols=45 Identities=16% Similarity=0.010 Sum_probs=27.6
Q ss_pred CCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 140 KAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 140 ~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
+..+..++.....++.+ ....+..+-+|-.|+ ...-...++..+.
T Consensus 27 g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~------~~~g~~~~~~l~~ 71 (127)
T 3i42_A 27 GFQADYVMSGTDALHAM----STRGYDAVFIDLNLP------DTSGLALVKQLRA 71 (127)
T ss_dssp TEEEEEESSHHHHHHHH----HHSCCSEEEEESBCS------SSBHHHHHHHHHH
T ss_pred CCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCC------CCCHHHHHHHHHh
Confidence 34677777777766654 346677777776655 3344455555555
No 334
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=22.32 E-value=1.2e+02 Score=19.81 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=24.3
Q ss_pred CCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 140 KAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 140 ~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
+..+..++.....++.+ ....+..+-+|-.|+ ...-...++.++.
T Consensus 30 g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~------~~~g~~~~~~l~~ 74 (140)
T 3grc_A 30 GFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLP------DQDGVSLIRALRR 74 (140)
T ss_dssp TCEEEEECSHHHHHHHH----HHSCCSEEEECSCCS------SSCHHHHHHHHHT
T ss_pred CCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCC------CCCHHHHHHHHHh
Confidence 34566666666666554 345566666666554 3333444555544
No 335
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=22.27 E-value=1.9e+02 Score=21.72 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=8.2
Q ss_pred HHHHHHHHHhCCceEEEeeC
Q 028376 153 LDVLEHAFIANNITCIKMKG 172 (210)
Q Consensus 153 L~li~~~L~~~gi~~~~~~G 172 (210)
...++..+ ..++.-+-+.+
T Consensus 67 ~~~~~~l~-~~~vdgii~~~ 85 (296)
T 3brq_A 67 RQAIQYLL-DLRCDAIMIYP 85 (296)
T ss_dssp HHHHHHHH-HTTCSEEEEEC
T ss_pred HHHHHHHH-hcCCCEEEEec
Confidence 33444333 34555444444
No 336
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.04 E-value=76 Score=19.44 Aligned_cols=31 Identities=19% Similarity=0.464 Sum_probs=17.9
Q ss_pred cccccccccccCCCeecC-CCCcchHhhHHHH
Q 028376 25 ETCPICQEKLGNQKMVFQ-CGHFTCCKCFFAM 55 (210)
Q Consensus 25 ~~C~iC~~~~~~~~~~~~-CgH~fC~~C~~~~ 55 (210)
+.|..|...+........ =|.+||..|..+.
T Consensus 42 F~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~ 73 (81)
T 2dlo_A 42 FTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73 (81)
T ss_dssp CBCSSSCCBCTTSCEECCTTCCCEEHHHHHHH
T ss_pred cCcccCCCccCCCeeEECCCCEEECHHHHHHH
Confidence 456666666654323332 4677777777654
No 337
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=21.93 E-value=1.7e+02 Score=21.81 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhCCce
Q 028376 151 DVLDVLEHAFIANNIT 166 (210)
Q Consensus 151 ~~L~li~~~L~~~gi~ 166 (210)
.++.-++.+++++|+.
T Consensus 20 ~~~~gi~~~~~~~g~~ 35 (275)
T 3d8u_A 20 HFLPSFQQALNKAGYQ 35 (275)
T ss_dssp HHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHHCCCE
Confidence 3333344444444433
No 338
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.89 E-value=63 Score=23.62 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=26.9
Q ss_pred ccCchHHHHHhcCCCCccccccccccccCCCeecCCCCcchHhhHHHHHHHhhhccccCCCccccccCCccc
Q 028376 8 ISNSTKHRIESLSKADEETCPICQEKLGNQKMVFQCGHFTCCKCFFAMTEQRLIHDNKVKNEWVMCPTCRQR 79 (210)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~~C~iC~~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 79 (210)
+...++..++.+....... .....+...|||++=. .....||+|..+
T Consensus 116 H~~~~~~~l~~l~~~~~~~-------~~~~~~C~~CG~i~~~------------------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 116 HAELYRKAKEKAEKGEDIE-------IKKVYICPICGYTAVD------------------EAPEYCPVCGAP 162 (170)
T ss_dssp HHHHHHHHHHHHTTTCCCC-------CSCEEECTTTCCEEES------------------CCCSBCTTTCCB
T ss_pred HHHHHHHHHHHHhcCCcCC-------CCCeeEeCCCCCeeCC------------------CCCCCCCCCCCC
Confidence 3345667777787655431 1122455678887621 112389999875
No 339
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=21.65 E-value=1.1e+02 Score=24.14 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=16.2
Q ss_pred CCceEEEeeCCCCCCcchhhHhhhHHHHHHh
Q 028376 163 NNITCIKMKGENHKLPSANLQHRNALQKELT 193 (210)
Q Consensus 163 ~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~ 193 (210)
+|+.-+..-|+..+...|+.++|.++++.-.
T Consensus 34 ~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~ 64 (291)
T 3a5f_A 34 SKTDAIIVCGTTGEATTMTETERKETIKFVI 64 (291)
T ss_dssp TTCCEEEESSGGGTGGGSCHHHHHHHHHHHH
T ss_pred cCCCEEEECccccChhhCCHHHHHHHHHHHH
Confidence 4555445555555555555555555555443
No 340
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=21.56 E-value=1.6e+02 Score=22.12 Aligned_cols=12 Identities=0% Similarity=0.033 Sum_probs=5.7
Q ss_pred hCCceEEEeeCC
Q 028376 162 ANNITCIKMKGE 173 (210)
Q Consensus 162 ~~gi~~~~~~G~ 173 (210)
..++.-+-+.+.
T Consensus 61 ~~~vdgii~~~~ 72 (289)
T 1dbq_A 61 QKRVDGLLVMCS 72 (289)
T ss_dssp HTTCSEEEEECS
T ss_pred hCCCCEEEEEec
Confidence 445554444443
No 341
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=21.25 E-value=43 Score=22.09 Aligned_cols=25 Identities=4% Similarity=0.147 Sum_probs=20.8
Q ss_pred hhhHhhhHHHHHHhhcCCCCCCccc
Q 028376 180 ANLQHRNALQKELTRHMPSSQSQSL 204 (210)
Q Consensus 180 ~~~~~R~~~l~~F~~~~p~~~~~~~ 204 (210)
++..++..+|+.|..++.|.-|+.+
T Consensus 6 l~~~~K~~ii~~~~~~~~DTGS~EV 30 (93)
T 3ulw_A 6 LDSAKKAEIVAKFAKKPGDTGSTEV 30 (93)
T ss_dssp CCHHHHHHHHHHHCSSTTCSCCHHH
T ss_pred cCHHHHHHHHHHHcCCCCCCCCHHH
Confidence 6788999999999998888776643
No 342
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Probab=21.23 E-value=2.3e+02 Score=23.82 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCCcE-EEEcch---HHHHHHHHHHHHhCCceEEEeeCC
Q 028376 130 RILWIKSTDPKAKI-LVFSSW---NDVLDVLEHAFIANNITCIKMKGE 173 (210)
Q Consensus 130 ~L~~~~~~~~~~K~-iVFSQf---~~~L~li~~~L~~~gi~~~~~~G~ 173 (210)
.|++.+.+.|+.++ +|||.- ..-..-+..+.++++|.++.+|.-
T Consensus 155 ~Lle~re~nPG~~i~LVYsStlLn~~a~~ql~~faken~IsllDids~ 202 (525)
T 3jsz_A 155 ALKRRREQYPGCKIRLIYSSSLLNPEANRQMKAFAKKQNISLIDIDSV 202 (525)
T ss_dssp HHHHHHHHCTTCEEEEEECSTTSCHHHHHHHHHHHHHTTEEEEEGGGC
T ss_pred HHHHHHhhCCCCeEEEEeehhhcCHHHHHHHHHHHHhcCceEeehhhh
Confidence 44446677899777 899982 344555677778999999888764
No 343
>2l2o_A UPF0727 protein C6ORF115; HSPC280, winged helix, unknown function; NMR {Homo sapiens}
Probab=21.22 E-value=1.1e+02 Score=19.93 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCCcEEE-Ecc------hHHHH-HHHHHHHHhCCceEEEeeCCCC
Q 028376 124 IEAVTRRILWIKSTDPKAKILV-FSS------WNDVL-DVLEHAFIANNITCIKMKGENH 175 (210)
Q Consensus 124 i~al~~~L~~~~~~~~~~K~iV-FSQ------f~~~L-~li~~~L~~~gi~~~~~~G~m~ 175 (210)
|..|.+.|.++-..+++.|..| |-. +.... .+++..+.+..-+++.|.|-|-
T Consensus 7 I~~L~~~I~~~G~~~~dG~~~V~FG~LF~dd~~~ni~e~LVGtL~~ArK~k~V~FeGEmL 66 (89)
T 2l2o_A 7 VNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKSANLFEALVGTLKAAKRRKIVTYPGELL 66 (89)
T ss_dssp HHHHHHHHHHHCEECTTSSEEEEHHHHHHHHHHHCCCTTHHHHHHHHHHTTSEECSCSCC
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEeeeeecchHHhhHHHHHHHHHHHHHhcCceeeccceE
Confidence 5678888888877778888655 322 11111 2455555566666788999874
No 344
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=21.15 E-value=40 Score=24.27 Aligned_cols=10 Identities=30% Similarity=1.026 Sum_probs=7.9
Q ss_pred ccccCCcccc
Q 028376 71 VMCPTCRQRT 80 (210)
Q Consensus 71 ~~CP~Cr~~~ 80 (210)
..||.|+.++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 4799998864
No 345
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=21.15 E-value=1.8e+02 Score=19.71 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=26.0
Q ss_pred CcEEEEcc-hHHHHHHH-HHHHHhCC---ceEEEeeCC
Q 028376 141 AKILVFSS-WNDVLDVL-EHAFIANN---ITCIKMKGE 173 (210)
Q Consensus 141 ~K~iVFSQ-f~~~L~li-~~~L~~~g---i~~~~~~G~ 173 (210)
.+++||+. |-.+-..+ ...|...| +.|..++=.
T Consensus 37 ~~Vvvy~~~~Cp~C~~a~k~~L~~~~~~~i~~~~vdvd 74 (129)
T 3ctg_A 37 KEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELD 74 (129)
T ss_dssp SSEEEEECTTCHHHHHHHHHHHTTSCCCGGGEEEEEGG
T ss_pred CCEEEEECCCCCchHHHHHHHHHhcCccCCCcEEEEcc
Confidence 37888886 66677777 99999999 998877654
No 346
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=21.07 E-value=20 Score=23.06 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=19.8
Q ss_pred ccccccccccC----CCeec-CCCCcchHhhHHHH
Q 028376 26 TCPICQEKLGN----QKMVF-QCGHFTCCKCFFAM 55 (210)
Q Consensus 26 ~C~iC~~~~~~----~~~~~-~CgH~fC~~C~~~~ 55 (210)
-||-|...+.. ..+.- .|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 49888654321 12333 59999999998766
No 347
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=20.91 E-value=2.2e+02 Score=21.49 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHhCCceEEEe
Q 028376 149 WNDVLDVLEHAFIANNITCIKM 170 (210)
Q Consensus 149 f~~~L~li~~~L~~~gi~~~~~ 170 (210)
|..++.-++.+++++|+....+
T Consensus 35 ~~~~~~gi~~~~~~~g~~~~~~ 56 (293)
T 2iks_A 35 YTRIANYLERQARQRGYQLLIA 56 (293)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEE
Confidence 4445555555555555554433
No 348
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=20.91 E-value=1.6e+02 Score=22.61 Aligned_cols=37 Identities=8% Similarity=0.007 Sum_probs=26.5
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHH-hCCce-EEEeeCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFI-ANNIT-CIKMKGEN 174 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~-~~gi~-~~~~~G~m 174 (210)
+++..+|||.+--..-......|. ..|+. ...|+|++
T Consensus 231 ~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 231 TKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 456677778765544556778888 89994 67789984
No 349
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=20.80 E-value=1.2e+02 Score=19.48 Aligned_cols=45 Identities=7% Similarity=-0.112 Sum_probs=25.1
Q ss_pred CCcEEEEcchHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 140 KAKILVFSSWNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 140 ~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
+..+..++.....+..+ .......+-+|-.|+ ...-...+++++.
T Consensus 30 g~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~------~~~g~~~~~~l~~ 74 (132)
T 3lte_A 30 HWQVEIAHNGFDAGIKL----STFEPAIMTLDLSMP------KLDGLDVIRSLRQ 74 (132)
T ss_dssp TCEEEEESSHHHHHHHH----HHTCCSEEEEESCBT------TBCHHHHHHHHHT
T ss_pred CcEEEEeCCHHHHHHHH----HhcCCCEEEEecCCC------CCCHHHHHHHHHh
Confidence 44566666666665544 345566666666654 3334455555554
No 350
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=20.80 E-value=24 Score=21.93 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=10.5
Q ss_pred ccccccCCccccc
Q 028376 69 EWVMCPTCRQRTD 81 (210)
Q Consensus 69 ~~~~CP~Cr~~~~ 81 (210)
....||+|++++.
T Consensus 8 ~~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 8 ITVNCPTCGKTVV 20 (68)
T ss_dssp CEEECTTTCCEEE
T ss_pred CcCcCCCCCCccc
Confidence 4568999999875
No 351
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=20.77 E-value=48 Score=22.87 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=27.0
Q ss_pred CCCCcEEEEcchHHHHHHHHHHHHhCCce-EEEeeCCC
Q 028376 138 DPKAKILVFSSWNDVLDVLEHAFIANNIT-CIKMKGEN 174 (210)
Q Consensus 138 ~~~~K~iVFSQf~~~L~li~~~L~~~gi~-~~~~~G~m 174 (210)
+++.++|||.+--.--......|...|+. ...|+|++
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 45677888876544445677888899995 66789994
No 352
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=20.76 E-value=3.1e+02 Score=22.51 Aligned_cols=66 Identities=3% Similarity=0.005 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHHhcCCCCcEEEEcc-----hHHHHHHHHHHHHhCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 122 TKIEAVTRRILWIKSTDPKAKILVFSS-----WNDVLDVLEHAFIANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 122 sKi~al~~~L~~~~~~~~~~K~iVFSQ-----f~~~L~li~~~L~~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
..++.+++.+++ ..-+=+|.+++ |.-...++...|++.||+++.+++..... +..|=..-|+.|-.
T Consensus 300 ~R~~~i~~~~~~----~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~giP~l~ie~D~~~~---~~~q~~TRieAF~E 370 (385)
T 3o3m_B 300 KRGSLIVDEVKK----KDIDGVIFCMMKFCDPEEYDYPLVRKDIEDSGIPTLYVEIDQQTQ---NNEQARTRIQTFAE 370 (385)
T ss_dssp THHHHHHHHHHH----TTCCEEEEEEETTCHHHHHHHHHHHHHHHTTTCCEEEEEECTTCS---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCCCEEEEeccCCCCccHhhHHHHHHHHHHCCCCEEEEEecCCCC---ChHHHHHHHHHHHH
Confidence 556666655553 22334444444 34455678888899999999998886511 22344445666654
No 353
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=20.68 E-value=47 Score=21.67 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=20.2
Q ss_pred hhhHhhhHHHHHHhhcCCCCCCccc
Q 028376 180 ANLQHRNALQKELTRHMPSSQSQSL 204 (210)
Q Consensus 180 ~~~~~R~~~l~~F~~~~p~~~~~~~ 204 (210)
++..++..+|+.|..++.|.-|+.+
T Consensus 2 l~~~~K~~ii~~~~~~~~DTGS~Ev 26 (88)
T 4a5u_B 2 LSTEATAKIVSEFGRDANDTGSTEV 26 (88)
T ss_dssp CCHHHHHHHHHHHSSSTTCTTCHHH
T ss_pred CCHHHHHHHHHHHcCCCCCCCCHHH
Confidence 5688999999999998887766543
No 354
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=20.66 E-value=1.7e+02 Score=23.32 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=14.1
Q ss_pred CceEEEeeCCCCCCcchhhHhhhHHHHHH
Q 028376 164 NITCIKMKGENHKLPSANLQHRNALQKEL 192 (210)
Q Consensus 164 gi~~~~~~G~m~~~~~~~~~~R~~~l~~F 192 (210)
|+.-+-.-|+..+...|+.++|.++++.-
T Consensus 50 Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~ 78 (304)
T 3cpr_A 50 GLDSLVLAGTTGESPTTTAAEKLELLKAV 78 (304)
T ss_dssp TCCEEEESSTTTTTTTSCHHHHHHHHHHH
T ss_pred CCCEEEECccccChhhCCHHHHHHHHHHH
Confidence 44444444555555555555555544443
No 355
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=20.37 E-value=2.3e+02 Score=21.41 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=5.3
Q ss_pred hCCceEEEeeC
Q 028376 162 ANNITCIKMKG 172 (210)
Q Consensus 162 ~~gi~~~~~~G 172 (210)
..++.-+-+.+
T Consensus 70 ~~~vdgiIi~~ 80 (289)
T 2fep_A 70 GKQVDGIVFMG 80 (289)
T ss_dssp HTTCSEEEECC
T ss_pred hCCCCEEEEec
Confidence 45555444444
No 356
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=20.24 E-value=1.6e+02 Score=23.19 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=23.5
Q ss_pred hCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 162 ANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 162 ~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
.+|+.-+..-|+..+...|+.++|.++++.-..
T Consensus 31 ~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~ 63 (293)
T 1w3i_A 31 RKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYD 63 (293)
T ss_dssp HTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHT
T ss_pred HcCCCEEEECccccChhhCCHHHHHHHHHHHHH
Confidence 367766667777777777777777777776654
No 357
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=20.13 E-value=49 Score=22.68 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=21.4
Q ss_pred EEcchHHHHHHHHHHHHhCCceEEE
Q 028376 145 VFSSWNDVLDVLEHAFIANNITCIK 169 (210)
Q Consensus 145 VFSQf~~~L~li~~~L~~~gi~~~~ 169 (210)
+|-||..+|.+++..-.+.|+.|-+
T Consensus 9 lY~aWvell~Wl~eyA~~~g~~Fek 33 (129)
T 3i9v_7 9 LYEAWVELLSWMREYAQAKGVRFEK 33 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCceee
Confidence 5778999999999999999988754
No 358
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=20.10 E-value=82 Score=20.23 Aligned_cols=33 Identities=6% Similarity=0.048 Sum_probs=20.5
Q ss_pred CcEEEEcc-hHHHHHHHHHHHH--hCCceEEEeeCC
Q 028376 141 AKILVFSS-WNDVLDVLEHAFI--ANNITCIKMKGE 173 (210)
Q Consensus 141 ~K~iVFSQ-f~~~L~li~~~L~--~~gi~~~~~~G~ 173 (210)
.++++|+. |-..-+.+...|+ .++|.|..+|-.
T Consensus 17 ~~v~~f~~~~C~~C~~~~~~L~~l~~~i~~~~vdi~ 52 (100)
T 1wjk_A 17 PVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDIT 52 (100)
T ss_dssp CEEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETT
T ss_pred CEEEEEeCCCCcchHHHHHHHHHhhhCCeEEEEECC
Confidence 35556654 6666666666666 556776666554
No 359
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=20.08 E-value=94 Score=22.29 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCcEEEEcchHHHHHHHHHHHHhCCceEEEeeC
Q 028376 128 TRRILWIKSTDPKAKILVFSSWNDVLDVLEHAFIANNITCIKMKG 172 (210)
Q Consensus 128 ~~~L~~~~~~~~~~K~iVFSQf~~~L~li~~~L~~~gi~~~~~~G 172 (210)
.+.+.++.+..++ |||+||. .=++....|.++||-.++--.
T Consensus 62 ~~~v~kI~~~g~n---VVl~~k~-I~d~a~~~l~k~gI~~v~~v~ 102 (159)
T 1ass_A 62 KQMVEKIKKSGAN---VVLCQKG-IDDVAQHYLAKEGIYAVRRVK 102 (159)
T ss_dssp HHHHHHHHHTTCS---EEEESSC-BCHHHHHHHHHTTCEEECSCC
T ss_pred HHHhhhhhhCCCe---EEEECCc-cCHHHHHHHHHCCCEEEccCC
Confidence 3444444444333 7888886 468889999999998776533
No 360
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=20.05 E-value=1.4e+02 Score=24.35 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=13.3
Q ss_pred CceEEEeeCCCCCCcchhhHhhhHHHHHH
Q 028376 164 NITCIKMKGENHKLPSANLQHRNALQKEL 192 (210)
Q Consensus 164 gi~~~~~~G~m~~~~~~~~~~R~~~l~~F 192 (210)
|+.-+..-|+..+...|+.++|.++++.-
T Consensus 65 Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ 93 (343)
T 2v9d_A 65 GVDGLFFLGSGGEFSQLGAEERKAIARFA 93 (343)
T ss_dssp TCSCEEESSTTTTGGGSCHHHHHHHHHHH
T ss_pred CCCEEEeCccccChhhCCHHHHHHHHHHH
Confidence 44333444444444445555554444433
No 361
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=20.01 E-value=1.6e+02 Score=23.15 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=25.2
Q ss_pred hCCceEEEeeCCCCCCcchhhHhhhHHHHHHhh
Q 028376 162 ANNITCIKMKGENHKLPSANLQHRNALQKELTR 194 (210)
Q Consensus 162 ~~gi~~~~~~G~m~~~~~~~~~~R~~~l~~F~~ 194 (210)
.+|+.-+..-|+..+...|+.++|.++++.-..
T Consensus 31 ~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~ 63 (288)
T 2nuw_A 31 EKGIDAIFVNGTTGLGPALSKDEKRQNLNALYD 63 (288)
T ss_dssp HTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTT
T ss_pred HcCCCEEEECccccChhhCCHHHHHHHHHHHHH
Confidence 467777777788888888888888888877654
Done!