Query 028377
Match_columns 210
No_of_seqs 219 out of 730
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:34:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0439 VAMP-associated protei 100.0 3.9E-29 8.5E-34 211.1 16.1 136 1-138 3-141 (218)
2 COG5066 SCS2 VAMP-associated p 100.0 9.4E-29 2E-33 206.0 13.0 118 7-126 3-121 (242)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 5.5E-24 1.2E-28 160.5 12.7 104 7-111 2-107 (109)
4 PF14874 PapD-like: Flagellar- 98.6 7.3E-07 1.6E-11 66.3 11.4 70 5-74 2-74 (102)
5 PF00345 PapD_N: Pili and flag 97.0 0.013 2.7E-07 44.9 10.4 107 7-126 2-117 (122)
6 PF14646 MYCBPAP: MYCBP-associ 94.6 0.24 5.3E-06 46.1 9.5 63 13-75 238-313 (426)
7 PF07610 DUF1573: Protein of u 93.8 0.42 9.1E-06 30.6 6.6 43 28-71 2-45 (45)
8 PRK09918 putative fimbrial cha 93.7 0.89 1.9E-05 39.0 10.4 83 7-96 26-113 (230)
9 PF11614 FixG_C: IG-like fold 93.1 0.54 1.2E-05 35.7 7.3 50 25-74 34-85 (118)
10 PRK09926 putative chaperone pr 92.5 1.7 3.7E-05 37.7 10.4 86 6-96 26-121 (246)
11 PRK15249 fimbrial chaperone pr 92.1 1.8 3.9E-05 37.7 10.2 72 6-80 29-111 (253)
12 PRK11385 putativi pili assembl 92.1 1.6 3.5E-05 37.7 9.8 85 7-96 28-124 (236)
13 PRK15299 fimbrial chaperone pr 92.0 4.7 0.0001 34.5 12.5 85 6-96 23-115 (227)
14 PRK15246 fimbrial assembly cha 90.4 3.7 8.1E-05 35.4 10.3 85 7-96 12-106 (233)
15 PRK15211 fimbrial chaperone pr 90.0 4.2 9.1E-05 35.0 10.2 84 7-96 24-113 (229)
16 PRK15295 fimbrial assembly cha 89.7 4.5 9.8E-05 34.6 10.2 84 7-96 21-111 (226)
17 PRK15192 fimbrial chaperone Bc 88.8 4.9 0.00011 34.8 9.8 82 7-96 24-119 (234)
18 PF10482 CtIP_N: Tumour-suppre 87.1 0.94 2E-05 35.1 3.8 31 175-205 89-119 (120)
19 PRK15208 long polar fimbrial c 86.8 8.9 0.00019 32.8 10.2 71 6-80 22-98 (228)
20 PRK15290 lfpB fimbrial chapero 86.6 8.9 0.00019 33.3 10.2 85 7-96 39-131 (243)
21 PF06280 DUF1034: Fn3-like dom 85.9 2.8 6E-05 31.5 5.9 54 21-74 7-81 (112)
22 PF05377 FlaC_arch: Flagella a 85.2 2.4 5.3E-05 28.7 4.7 32 177-208 2-33 (55)
23 PRK15422 septal ring assembly 84.8 1.5 3.1E-05 31.8 3.6 37 170-206 27-63 (79)
24 PF02183 HALZ: Homeobox associ 84.6 3 6.4E-05 27.0 4.7 32 177-208 7-38 (45)
25 PRK15188 fimbrial chaperone pr 83.8 15 0.00033 31.6 10.2 84 7-96 29-118 (228)
26 COG3121 FimC P pilus assembly 83.4 22 0.00047 30.6 11.1 84 7-96 29-119 (235)
27 PF04977 DivIC: Septum formati 83.4 3 6.5E-05 28.9 4.8 32 177-208 19-50 (80)
28 PRK15195 fimbrial chaperone pr 83.3 13 0.00029 31.9 9.7 70 7-80 27-102 (229)
29 smart00809 Alpha_adaptinC2 Ada 82.9 8.2 0.00018 28.1 7.3 54 21-74 17-74 (104)
30 TIGR03079 CH4_NH3mon_ox_B meth 82.3 3.4 7.4E-05 38.2 5.8 54 20-73 280-354 (399)
31 PRK15254 fimbrial chaperone pr 81.8 21 0.00045 31.0 10.3 85 7-96 18-110 (239)
32 PF06005 DUF904: Protein of un 80.6 3.7 7.9E-05 29.2 4.4 23 174-196 10-32 (72)
33 PF10633 NPCBM_assoc: NPCBM-as 80.4 2.9 6.3E-05 29.3 3.9 56 21-76 4-63 (78)
34 COG3074 Uncharacterized protei 78.7 3.4 7.4E-05 29.4 3.6 34 171-204 28-61 (79)
35 PRK00888 ftsB cell division pr 78.5 4.5 9.8E-05 30.6 4.6 32 177-208 29-60 (105)
36 PF06156 DUF972: Protein of un 78.0 4.2 9.1E-05 31.0 4.3 32 175-206 22-53 (107)
37 PRK15218 fimbrial chaperone pr 76.6 48 0.001 28.4 11.4 84 7-96 20-113 (226)
38 PF06005 DUF904: Protein of un 74.8 7.9 0.00017 27.5 4.7 35 172-206 22-56 (72)
39 PF05506 DUF756: Domain of unk 74.4 13 0.00029 26.7 6.0 41 24-71 20-65 (89)
40 smart00340 HALZ homeobox assoc 74.3 6.6 0.00014 25.2 3.7 24 184-207 7-30 (44)
41 PF06156 DUF972: Protein of un 74.0 9.7 0.00021 29.1 5.3 37 172-208 12-48 (107)
42 PF00927 Transglut_C: Transglu 72.8 16 0.00036 26.9 6.4 55 20-74 13-77 (107)
43 PRK15224 pili assembly chapero 72.1 65 0.0014 27.9 11.1 80 9-96 32-118 (237)
44 PRK13169 DNA replication intia 71.8 12 0.00026 28.8 5.4 34 174-207 21-54 (110)
45 PRK15233 putative fimbrial cha 71.3 57 0.0012 28.5 10.2 79 10-96 45-130 (246)
46 TIGR02209 ftsL_broad cell divi 70.6 11 0.00024 26.6 4.8 32 177-208 26-57 (85)
47 PF02883 Alpha_adaptinC2: Adap 70.4 16 0.00034 27.2 5.8 54 20-73 22-79 (115)
48 PRK15285 putative fimbrial cha 70.0 75 0.0016 27.7 11.3 69 9-80 29-105 (250)
49 TIGR03752 conj_TIGR03752 integ 69.5 8 0.00017 36.9 4.8 37 172-208 56-92 (472)
50 PF14775 NYD-SP28_assoc: Sperm 67.3 13 0.00027 25.4 4.2 32 175-206 26-57 (60)
51 PRK10884 SH3 domain-containing 67.0 8.3 0.00018 32.7 4.0 35 172-206 122-156 (206)
52 PF02753 PapD_C: Pili assembly 66.9 5 0.00011 27.3 2.2 45 28-72 1-46 (68)
53 PRK15274 putative periplasmic 66.4 91 0.002 27.4 11.5 83 9-96 30-120 (257)
54 PF07716 bZIP_2: Basic region 66.4 13 0.00027 24.5 4.0 29 176-204 26-54 (54)
55 PRK13169 DNA replication intia 66.4 12 0.00025 28.8 4.3 36 173-208 13-48 (110)
56 PF11611 DUF4352: Domain of un 66.2 32 0.00069 25.4 6.8 53 21-73 35-101 (123)
57 PF00170 bZIP_1: bZIP transcri 65.4 19 0.00041 24.3 4.9 33 176-208 27-59 (64)
58 PRK15253 putative fimbrial ass 65.3 92 0.002 27.0 11.4 83 8-96 36-128 (242)
59 KOG3119 Basic region leucine z 64.1 11 0.00025 33.1 4.4 37 172-208 212-248 (269)
60 PRK15422 septal ring assembly 64.1 14 0.00031 26.8 4.1 36 172-207 8-43 (79)
61 PF04999 FtsL: Cell division p 63.4 18 0.00039 26.4 4.8 32 177-208 37-68 (97)
62 PF04744 Monooxygenase_B: Mono 63.3 37 0.0008 31.5 7.6 65 7-73 249-335 (381)
63 smart00338 BRLZ basic region l 63.2 17 0.00036 24.7 4.3 28 179-206 30-57 (65)
64 PF07716 bZIP_2: Basic region 62.5 19 0.00042 23.5 4.4 29 180-208 23-51 (54)
65 COG3074 Uncharacterized protei 62.3 13 0.00029 26.4 3.6 33 173-205 9-41 (79)
66 smart00338 BRLZ basic region l 62.2 22 0.00048 24.0 4.8 33 173-205 31-63 (65)
67 PF02344 Myc-LZ: Myc leucine z 62.0 25 0.00054 21.1 4.2 24 185-208 4-27 (32)
68 PF06030 DUF916: Bacterial pro 61.1 74 0.0016 24.5 8.8 26 18-43 23-48 (121)
69 TIGR02449 conserved hypothetic 59.6 25 0.00054 24.6 4.6 33 177-209 23-55 (65)
70 PF00553 CBM_2: Cellulose bind 59.1 22 0.00049 26.2 4.7 52 22-73 13-84 (101)
71 TIGR02745 ccoG_rdxA_fixG cytoc 58.9 68 0.0015 30.3 8.8 52 23-74 347-400 (434)
72 PF01166 TSC22: TSC-22/dip/bun 58.6 30 0.00066 23.7 4.7 30 175-204 14-43 (59)
73 PF13473 Cupredoxin_1: Cupredo 57.9 59 0.0013 23.7 6.8 52 8-71 31-82 (104)
74 PF02183 HALZ: Homeobox associ 57.6 29 0.00063 22.3 4.4 34 172-205 9-42 (45)
75 PRK14127 cell division protein 57.3 26 0.00056 26.9 4.8 33 175-207 30-62 (109)
76 PF09738 DUF2051: Double stran 56.2 26 0.00056 31.6 5.3 39 170-208 86-124 (302)
77 smart00637 CBD_II CBD_II domai 56.0 72 0.0016 22.8 6.9 48 24-71 8-75 (92)
78 PF12690 BsuPI: Intracellular 55.2 72 0.0016 22.9 6.6 21 24-44 2-22 (82)
79 PF03173 CHB_HEX: Putative car 54.2 17 0.00037 29.7 3.6 34 40-73 69-104 (164)
80 PF14796 AP3B1_C: Clathrin-ada 51.9 81 0.0018 25.4 7.1 50 22-71 85-138 (145)
81 PF07407 Seadorna_VP6: Seadorn 51.1 18 0.0004 33.1 3.5 10 117-126 7-16 (420)
82 PF00170 bZIP_1: bZIP transcri 50.9 37 0.00081 22.8 4.4 34 172-205 30-63 (64)
83 KOG4005 Transcription factor X 50.7 1.1E+02 0.0024 26.9 8.1 35 174-208 89-123 (292)
84 PRK15308 putative fimbrial pro 50.5 1.7E+02 0.0036 25.4 9.5 82 7-96 18-117 (234)
85 KOG1962 B-cell receptor-associ 50.5 20 0.00044 30.8 3.6 36 172-207 176-211 (216)
86 PF12709 Kinetocho_Slk19: Cent 50.3 35 0.00076 25.2 4.3 27 181-207 48-74 (87)
87 PF05753 TRAP_beta: Translocon 48.9 1E+02 0.0023 25.5 7.5 54 20-74 36-98 (181)
88 COG4467 Regulator of replicati 48.8 32 0.00069 26.5 4.0 28 178-205 25-52 (114)
89 PF10224 DUF2205: Predicted co 48.5 35 0.00077 24.7 4.1 39 170-208 25-63 (80)
90 PF07334 IFP_35_N: Interferon- 47.5 32 0.0007 24.7 3.7 23 184-206 2-24 (76)
91 TIGR00219 mreC rod shape-deter 46.8 46 0.00099 29.5 5.4 14 193-206 95-108 (283)
92 PF01920 Prefoldin_2: Prefoldi 45.8 38 0.00083 24.5 4.1 38 172-209 66-103 (106)
93 KOG4191 Histone acetyltransfer 45.6 41 0.0009 32.0 5.1 35 175-209 401-435 (516)
94 PRK13922 rod shape-determining 45.4 50 0.0011 28.6 5.4 31 175-205 76-109 (276)
95 TIGR02449 conserved hypothetic 44.6 45 0.00097 23.3 3.9 35 174-208 6-40 (65)
96 KOG4005 Transcription factor X 44.2 36 0.00078 29.9 4.1 30 179-208 87-116 (292)
97 PF05103 DivIVA: DivIVA protei 43.1 57 0.0012 24.6 4.8 31 178-208 21-51 (131)
98 PF08172 CASP_C: CASP C termin 43.0 1.1E+02 0.0024 26.6 7.2 35 175-209 93-127 (248)
99 smart00340 HALZ homeobox assoc 42.9 55 0.0012 21.0 3.8 24 180-203 10-33 (44)
100 PF14802 TMEM192: TMEM192 fami 42.7 80 0.0017 27.4 6.1 30 179-208 206-235 (236)
101 PRK10803 tol-pal system protei 42.2 41 0.0009 29.3 4.4 31 178-208 57-87 (263)
102 PF07705 CARDB: CARDB; InterP 42.2 1E+02 0.0022 21.4 5.8 55 20-74 17-72 (101)
103 PRK10884 SH3 domain-containing 41.6 43 0.00092 28.4 4.2 30 174-203 138-167 (206)
104 COG4467 Regulator of replicati 41.4 69 0.0015 24.7 4.8 36 173-208 13-48 (114)
105 PF08172 CASP_C: CASP C termin 39.5 47 0.001 29.0 4.2 44 162-205 86-130 (248)
106 TIGR02338 gimC_beta prefoldin, 39.5 52 0.0011 24.7 4.0 38 172-209 71-108 (110)
107 PF02403 Seryl_tRNA_N: Seryl-t 39.2 1.3E+02 0.0028 22.1 6.2 34 175-208 67-100 (108)
108 PRK10265 chaperone-modulator p 38.6 73 0.0016 23.7 4.6 30 178-207 67-96 (101)
109 PF09738 DUF2051: Double stran 38.1 40 0.00087 30.4 3.7 25 183-207 220-244 (302)
110 PF08606 Prp19: Prp19/Pso4-lik 37.7 38 0.00083 24.0 2.8 26 177-202 45-70 (70)
111 TIGR02894 DNA_bind_RsfA transc 37.6 71 0.0015 26.2 4.7 21 186-206 108-128 (161)
112 PF14197 Cep57_CLD_2: Centroso 37.6 91 0.002 21.8 4.7 18 189-206 47-64 (69)
113 PRK15249 fimbrial chaperone pr 37.5 81 0.0017 27.4 5.4 42 27-69 177-219 (253)
114 KOG4196 bZIP transcription fac 37.1 80 0.0017 25.1 4.7 20 187-206 79-98 (135)
115 PRK09413 IS2 repressor TnpA; R 36.8 53 0.0011 25.0 3.7 22 182-203 78-99 (121)
116 PRK14127 cell division protein 36.4 85 0.0019 24.1 4.7 29 177-205 39-67 (109)
117 cd04766 HTH_HspR Helix-Turn-He 36.3 77 0.0017 22.7 4.4 33 174-207 58-90 (91)
118 PRK00888 ftsB cell division pr 35.9 62 0.0013 24.4 3.9 32 172-203 31-62 (105)
119 PF14197 Cep57_CLD_2: Centroso 35.7 49 0.0011 23.2 3.1 27 176-202 41-67 (69)
120 PF04728 LPP: Lipoprotein leuc 35.3 1.3E+02 0.0029 20.3 5.0 31 177-207 12-42 (56)
121 PF00631 G-gamma: GGL domain; 34.8 37 0.00079 23.3 2.3 18 190-207 3-20 (68)
122 COG3121 FimC P pilus assembly 34.7 78 0.0017 27.2 4.8 44 26-71 165-210 (235)
123 PF06305 DUF1049: Protein of u 34.3 62 0.0014 21.7 3.4 24 185-208 44-67 (68)
124 cd00890 Prefoldin Prefoldin is 34.2 73 0.0016 23.9 4.2 36 174-209 93-128 (129)
125 KOG0980 Actin-binding protein 34.2 90 0.002 32.3 5.7 21 105-128 262-282 (980)
126 PF10342 GPI-anchored: Ser-Thr 33.4 1.7E+02 0.0036 20.4 7.2 59 12-71 15-78 (93)
127 PF11382 DUF3186: Protein of u 33.1 51 0.0011 29.5 3.5 27 180-206 37-63 (308)
128 PRK05771 V-type ATP synthase s 32.9 61 0.0013 31.8 4.3 34 175-208 93-126 (646)
129 PF05308 Mito_fiss_reg: Mitoch 32.4 65 0.0014 28.3 4.0 25 177-201 117-141 (253)
130 PF10498 IFT57: Intra-flagella 32.2 98 0.0021 28.5 5.3 37 171-207 283-319 (359)
131 COG1470 Predicted membrane pro 32.1 4.8E+02 0.01 25.3 10.7 99 6-126 381-483 (513)
132 KOG0972 Huntingtin interacting 32.0 77 0.0017 28.8 4.4 38 170-207 289-326 (384)
133 TIGR02656 cyanin_plasto plasto 31.9 1.5E+02 0.0033 21.5 5.4 61 5-71 10-76 (99)
134 PF07558 Shugoshin_N: Shugoshi 31.7 57 0.0012 21.0 2.7 29 178-206 17-45 (46)
135 PF09640 DUF2027: Domain of un 31.7 87 0.0019 25.7 4.3 46 24-70 18-63 (162)
136 PF13205 Big_5: Bacterial Ig-l 30.6 2E+02 0.0043 20.4 7.2 56 13-71 26-84 (107)
137 TIGR03784 marine_sortase sorta 30.5 3E+02 0.0066 22.5 7.8 60 26-91 113-174 (174)
138 PF02996 Prefoldin: Prefoldin 30.5 50 0.0011 24.6 2.6 36 174-209 83-118 (120)
139 PLN02678 seryl-tRNA synthetase 30.4 1.4E+02 0.003 28.4 6.1 35 175-209 71-105 (448)
140 PF04728 LPP: Lipoprotein leuc 30.3 1.6E+02 0.0034 20.0 4.7 28 177-204 5-32 (56)
141 PRK13922 rod shape-determining 30.2 98 0.0021 26.8 4.8 32 177-208 71-105 (276)
142 PF11461 RILP: Rab interacting 30.1 76 0.0016 21.8 3.2 21 186-206 7-27 (60)
143 KOG4196 bZIP transcription fac 30.0 90 0.002 24.8 4.0 28 179-206 78-105 (135)
144 PTZ00454 26S protease regulato 30.0 71 0.0015 29.7 4.0 36 173-208 27-62 (398)
145 PF04111 APG6: Autophagy prote 29.9 87 0.0019 28.2 4.5 31 177-207 59-89 (314)
146 PF11906 DUF3426: Protein of u 29.6 2.2E+02 0.0048 22.0 6.4 52 22-73 68-136 (149)
147 cd06409 PB1_MUG70 The MUG70 pr 29.4 35 0.00077 25.0 1.6 22 39-60 2-25 (86)
148 PRK09039 hypothetical protein; 29.4 74 0.0016 29.0 4.0 37 171-207 126-162 (343)
149 cd07429 Cby_like Chibby, a nuc 29.3 92 0.002 23.9 3.9 22 186-207 76-97 (108)
150 PF01486 K-box: K-box region; 29.2 1.1E+02 0.0025 22.3 4.3 31 176-206 69-99 (100)
151 PF06483 ChiC: Chitinase C; I 28.6 69 0.0015 26.8 3.3 25 36-71 116-140 (180)
152 PF12325 TMF_TATA_bd: TATA ele 28.0 2.1E+02 0.0045 22.2 5.8 11 184-194 39-49 (120)
153 PF08912 Rho_Binding: Rho Bind 27.9 1.6E+02 0.0034 20.8 4.5 10 179-188 21-30 (69)
154 smart00605 CW CW domain. 27.8 75 0.0016 22.9 3.1 23 26-48 57-80 (94)
155 PF08961 DUF1875: Domain of un 27.7 20 0.00043 31.0 0.0 37 172-208 126-162 (243)
156 PF13815 Dzip-like_N: Iguana/D 27.3 91 0.002 23.7 3.6 28 177-204 89-116 (118)
157 PRK03947 prefoldin subunit alp 26.9 1.1E+02 0.0023 23.7 4.1 35 174-208 100-134 (140)
158 PF13591 MerR_2: MerR HTH fami 26.7 93 0.002 22.2 3.4 26 178-203 59-84 (84)
159 PF13747 DUF4164: Domain of un 26.6 2.5E+02 0.0054 20.5 5.7 35 172-206 29-63 (89)
160 PF07412 Geminin: Geminin; In 26.5 1.4E+02 0.0031 25.4 4.9 23 181-203 131-153 (200)
161 PF03980 Nnf1: Nnf1 ; InterPr 26.5 1.6E+02 0.0034 21.8 4.8 28 180-207 78-105 (109)
162 TIGR00219 mreC rod shape-deter 26.4 1.2E+02 0.0026 26.8 4.7 8 201-208 96-103 (283)
163 PF10226 DUF2216: Uncharacteri 26.3 1.4E+02 0.003 25.3 4.7 30 177-206 43-72 (195)
164 PF10211 Ax_dynein_light: Axon 25.8 1.3E+02 0.0028 25.0 4.5 25 179-203 124-148 (189)
165 PF15035 Rootletin: Ciliary ro 25.8 1.1E+02 0.0023 25.5 4.0 35 174-208 73-107 (182)
166 TIGR03752 conj_TIGR03752 integ 25.6 1.1E+02 0.0023 29.4 4.4 25 179-203 70-94 (472)
167 PRK10722 hypothetical protein; 25.6 1.3E+02 0.0029 26.3 4.6 31 177-207 160-194 (247)
168 KOG0977 Nuclear envelope prote 25.5 99 0.0021 30.2 4.2 33 176-208 156-188 (546)
169 cd00632 Prefoldin_beta Prefold 25.4 1.3E+02 0.0028 22.3 4.0 37 173-209 68-104 (105)
170 PF14054 DUF4249: Domain of un 25.3 3.1E+02 0.0067 23.4 7.1 51 23-74 60-111 (298)
171 PRK09926 putative chaperone pr 25.3 2.1E+02 0.0046 24.7 5.9 43 26-70 173-217 (246)
172 PF04576 Zein-binding: Zein-bi 25.3 1.3E+02 0.0027 22.6 3.9 28 175-202 31-58 (94)
173 COG4026 Uncharacterized protei 25.1 1.1E+02 0.0024 26.7 4.0 34 172-205 132-165 (290)
174 PF13600 DUF4140: N-terminal d 24.9 1.7E+02 0.0036 21.4 4.6 30 177-206 72-101 (104)
175 PRK10378 inactive ferrous ion 24.8 3.5E+02 0.0076 25.2 7.5 59 26-90 53-116 (375)
176 PF15035 Rootletin: Ciliary ro 24.6 1.5E+02 0.0033 24.6 4.7 33 174-206 87-119 (182)
177 PF11668 Gp_UL130: HCMV glycop 24.5 1.9E+02 0.004 23.6 4.9 43 14-56 102-154 (156)
178 KOG4673 Transcription factor T 24.5 1.1E+02 0.0025 30.9 4.4 31 176-206 410-440 (961)
179 PF04102 SlyX: SlyX; InterPro 24.4 1.7E+02 0.0038 20.1 4.3 32 176-207 19-50 (69)
180 COG1792 MreC Cell shape-determ 24.4 1.3E+02 0.0027 26.7 4.4 25 182-206 83-107 (284)
181 PF10883 DUF2681: Protein of u 24.4 1.2E+02 0.0027 22.3 3.7 19 179-197 27-45 (87)
182 PF14645 Chibby: Chibby family 24.1 1.2E+02 0.0027 23.3 3.8 26 183-208 72-97 (116)
183 cd00584 Prefoldin_alpha Prefol 24.0 1.4E+02 0.003 22.7 4.2 36 174-209 93-128 (129)
184 PRK15246 fimbrial assembly cha 23.9 1.9E+02 0.0042 24.8 5.4 39 27-69 154-192 (233)
185 PF08776 VASP_tetra: VASP tetr 23.9 2E+02 0.0042 18.2 3.9 26 176-207 12-37 (40)
186 PF08277 PAN_3: PAN-like domai 23.7 1.2E+02 0.0026 20.2 3.3 17 26-42 55-71 (71)
187 PRK02119 hypothetical protein; 23.6 2.3E+02 0.0049 19.9 4.8 31 176-206 24-54 (73)
188 PF03168 LEA_2: Late embryogen 23.6 2.1E+02 0.0045 19.9 4.8 46 27-72 1-52 (101)
189 PRK15295 fimbrial assembly cha 23.5 1.6E+02 0.0034 25.2 4.7 39 27-69 158-197 (226)
190 PRK15192 fimbrial chaperone Bc 23.4 2.1E+02 0.0045 24.7 5.5 40 27-70 163-203 (234)
191 PF09457 RBD-FIP: FIP domain ; 23.3 2.2E+02 0.0048 18.5 4.7 32 178-209 3-34 (48)
192 PF07795 DUF1635: Protein of u 23.3 1.3E+02 0.0028 25.8 4.1 31 175-205 33-63 (214)
193 KOG1769 Ubiquitin-like protein 23.1 1E+02 0.0022 23.3 3.1 25 24-48 19-43 (99)
194 PF10146 zf-C4H2: Zinc finger- 23.0 1.6E+02 0.0036 25.3 4.8 25 179-203 36-60 (230)
195 PF04340 DUF484: Protein of un 23.0 1.2E+02 0.0026 25.5 3.9 6 105-110 19-24 (225)
196 PF01763 Herpes_UL6: Herpesvir 22.7 2.7E+02 0.0059 27.3 6.6 35 174-208 369-403 (557)
197 PF14988 DUF4515: Domain of un 22.2 2.2E+02 0.0048 24.0 5.3 37 169-205 164-200 (206)
198 KOG4094 Uncharacterized conser 22.0 96 0.0021 25.3 2.9 30 176-205 58-87 (178)
199 PRK00295 hypothetical protein; 21.9 2.6E+02 0.0057 19.3 4.8 30 177-206 21-50 (68)
200 PF12808 Mto2_bdg: Micro-tubul 21.9 2E+02 0.0043 19.2 3.9 24 178-201 25-48 (52)
201 KOG3646 Acetylcholine receptor 21.8 96 0.0021 29.7 3.3 66 13-88 100-170 (486)
202 PF11180 DUF2968: Protein of u 21.7 1.8E+02 0.0039 24.6 4.6 30 179-208 151-180 (192)
203 PF10224 DUF2205: Predicted co 21.6 1.9E+02 0.0042 20.9 4.2 33 175-207 23-55 (80)
204 PF11382 DUF3186: Protein of u 21.6 1.5E+02 0.0033 26.5 4.4 27 177-203 41-67 (308)
205 cd00068 GGL G protein gamma su 21.5 69 0.0015 21.4 1.7 15 193-207 3-17 (57)
206 PF10458 Val_tRNA-synt_C: Valy 21.4 2.3E+02 0.0051 19.1 4.4 24 182-205 4-27 (66)
207 cd07657 F-BAR_Fes_Fer The F-BA 21.3 1.7E+02 0.0037 25.1 4.6 33 177-209 93-125 (237)
208 PF07798 DUF1640: Protein of u 21.2 2.7E+02 0.006 22.5 5.6 14 193-206 77-90 (177)
209 KOG4797 Transcriptional regula 21.2 1.6E+02 0.0034 22.8 3.8 21 182-202 74-94 (123)
210 PF05837 CENP-H: Centromere pr 21.1 2.3E+02 0.005 21.2 4.7 31 178-208 13-43 (106)
211 PF14916 CCDC92: Coiled-coil d 21.0 82 0.0018 21.6 2.0 26 180-205 19-44 (60)
212 PF04420 CHD5: CHD5-like prote 20.9 1.5E+02 0.0033 23.8 3.9 22 176-197 67-88 (161)
213 PF06657 Cep57_MT_bd: Centroso 20.9 2.7E+02 0.0058 19.9 4.8 27 180-206 15-41 (79)
214 PF05103 DivIVA: DivIVA protei 20.8 54 0.0012 24.8 1.2 35 172-206 22-56 (131)
215 KOG3865 Arrestin [Signal trans 20.7 1.4E+02 0.003 27.5 4.0 70 1-74 190-277 (402)
216 PRK15299 fimbrial chaperone pr 20.6 2.2E+02 0.0047 24.2 5.0 39 27-69 161-200 (227)
217 PF05377 FlaC_arch: Flagella a 20.5 2.3E+02 0.005 19.1 4.1 32 173-204 5-36 (55)
218 PF05529 Bap31: B-cell recepto 20.1 1.4E+02 0.003 24.4 3.6 24 182-205 161-184 (192)
219 PF04420 CHD5: CHD5-like prote 20.1 1.3E+02 0.0029 24.2 3.4 32 176-207 41-84 (161)
No 1
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.9e-29 Score=211.13 Aligned_cols=136 Identities=46% Similarity=0.712 Sum_probs=120.9
Q ss_pred CCCCcceEEeC-CeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCC
Q 028377 1 MSTGELLSIEP-LELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (210)
Q Consensus 1 m~~~~lL~i~P-~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~ 79 (210)
|+.+.+|.|+| .+|.|++++.+++.|.|+|+|+++.+||||||||+|++|||||+.|+|.||++++|.|++|++...|.
T Consensus 3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~ 82 (218)
T KOG0439|consen 3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPP 82 (218)
T ss_pred ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCch
Confidence 34678999999 58999999999999999999999999999999999999999999999999999999999999877899
Q ss_pred CCCCCCeEEEEEEecCCCCCccchhHHhhcccC--CCeeeEEEeEEEEeCCCCCCCCCCCC
Q 028377 80 DMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA--GHVVEECKLRVIYVSPPQPPSPVPEG 138 (210)
Q Consensus 80 d~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~--~~~v~e~KLrv~~~~p~~~~s~~~~~ 138 (210)
|++|+|||+||++.++.+ +..++. ++|.... +..+.+.+++|.|+.|+.+++....+
T Consensus 83 d~~~r~kF~v~~~~~~~~-~~~~~~-~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 141 (218)
T KOG0439|consen 83 DFKSRHKFLIQSLKAPPP-TTRDVV-DLWKFQKETPKESFETKLRVVFVAPTETDSVVAKL 141 (218)
T ss_pred hhcccceEEEEEEecCCc-cccchh-hhccccccccccccceeeEEEeeCCCCCccccccc
Confidence 999999999999999986 333443 7777655 78899999999999988877666544
No 2
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.96 E-value=9.4e-29 Score=205.99 Aligned_cols=118 Identities=35% Similarity=0.618 Sum_probs=108.5
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCccCC-CCCCCCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAP-PDMQCKD 85 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p-~d~~~kD 85 (210)
|+|+|. +.|..|+.+..++.+.|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+||++++.| +|.+|+|
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 566665 46666999999999999999999999999999999999999999999999999999999999888 7999999
Q ss_pred eEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEe
Q 028377 86 KFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (210)
Q Consensus 86 KFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~ 126 (210)
|||||+...+.+.+..|+. ++|....+.-+++.||||+|.
T Consensus 82 KFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvys 121 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYS 121 (242)
T ss_pred eeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEee
Confidence 9999999999887778886 999987777799999999998
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.91 E-value=5.5e-24 Score=160.45 Aligned_cols=104 Identities=38% Similarity=0.627 Sum_probs=82.8
Q ss_pred eEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCCCCCCC
Q 028377 7 LSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKD 85 (210)
Q Consensus 7 L~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~kD 85 (210)
|.|+|. .|.|..++++...+.|+|+|+++++||||||||+|.+|+|+|+.|+|.||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 789997 79999999999999999999999999999999999999999999999999999999999997654433 2399
Q ss_pred eEEEEEEecCCCC-CccchhHHhhccc
Q 028377 86 KFLLQSVKTNDGT-TAKDINAEMFNKE 111 (210)
Q Consensus 86 KFlVqs~~~~~~~-~~~di~~~~f~k~ 111 (210)
||+|+++.++.+. +..+....+|+..
T Consensus 81 kf~I~~~~~~~~~~~~~~~~~~~~~~~ 107 (109)
T PF00635_consen 81 KFLIQSIVVPDNATDPKKDFKQIWKNG 107 (109)
T ss_dssp EEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred EEEEEEEEcCCCccchhhhHHHHHhcc
Confidence 9999999998765 3323334666643
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.63 E-value=7.3e-07 Score=66.34 Aligned_cols=70 Identities=23% Similarity=0.420 Sum_probs=61.5
Q ss_pred cceEEeCCeeeEecc-CCCeeeEEEEEEeCCCCeEEEEEeecC--CCcEEEeCCCeeeCCCCeEEEEEEeccC
Q 028377 5 ELLSIEPLELKFPFE-LKKQISCSLQLSNKTDNYVAFKVKTTN--PKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 5 ~lL~i~P~eL~F~~~-~~k~~~~~l~L~N~s~~~VaFKVKTT~--P~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 74 (210)
..|.++|.+|.|-.- .+......|+|+|.+..+..|+|+.-. ...|.|.|..|+|.||.+.++.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 468999999999873 567788999999999999999998643 4689999999999999999999999954
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=96.98 E-value=0.013 Score=44.89 Aligned_cols=107 Identities=18% Similarity=0.257 Sum_probs=69.8
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC---C------CcEEEeCCCeeeCCCCeEEEEEEeccCccC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN---P------KKYCVRPNTGIVLPRSTCDIIVTMQAQKEA 77 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~---P------~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~ 77 (210)
|.|.|..+.|... .....++|+|.++.++.+.+.... . .-|.|-|+.-.|+||++..|.| +... ..
T Consensus 2 i~i~~trii~~~~---~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNES---QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEETT---SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeCC---CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 6788998888852 347899999999999999988764 1 2699999999999999999999 4433 23
Q ss_pred CCCCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEe
Q 028377 78 PPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (210)
Q Consensus 78 p~d~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~ 126 (210)
|.+.. ..|.|....+|......+ .+..-.....+.++|.|.
T Consensus 77 ~~~~E--~~yrl~~~~iP~~~~~~~------~~~~v~i~~~~~i~v~~r 117 (122)
T PF00345_consen 77 PIDRE--SLYRLSFREIPPSEAENE------SKNGVQIALRYSIPVFYR 117 (122)
T ss_dssp -SSS---EEEEEEEEEEESCCTTSS------SSSEEEEEEEEEEEEEEE
T ss_pred CCCce--EEEEEEEEEEeccccccc------ccceEEEEEEEEEEEEEC
Confidence 44322 334444444443221000 011112345677777776
No 6
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=94.65 E-value=0.24 Score=46.13 Aligned_cols=63 Identities=16% Similarity=0.357 Sum_probs=52.6
Q ss_pred eeeEeccCCCeeeEEEE-EEeCCCCeEEEEEeecC------------CCcEEEeCCCeeeCCCCeEEEEEEeccCc
Q 028377 13 ELKFPFELKKQISCSLQ-LSNKTDNYVAFKVKTTN------------PKKYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (210)
Q Consensus 13 eL~F~~~~~k~~~~~l~-L~N~s~~~VaFKVKTT~------------P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 75 (210)
.|.|.-..+......|. |.|.+...|-|..+--. ...|......|+|.||++..+.|++++..
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~ 313 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRK 313 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCC
Confidence 68888876666666666 99999999999977543 35799999999999999999999999853
No 7
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=93.85 E-value=0.42 Score=30.55 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=35.9
Q ss_pred EEEEeCCCCeE-EEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEe
Q 028377 28 LQLSNKTDNYV-AFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 28 l~L~N~s~~~V-aFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itl 71 (210)
++++|.++.++ ..+|+| +=+...+......|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 67999998776 566765 56888899999999999999999874
No 8
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=93.74 E-value=0.89 Score=39.03 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=58.6
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCC-----CcEEEeCCCeeeCCCCeEEEEEEeccCccCCCCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNP-----KKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P-----~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~ 81 (210)
|.+.|..+.|... .....++|+|.++.++......... .-|.|-|+.-.|+||+...|.|.... ..|.|.
T Consensus 26 v~l~~tRvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~--~lp~dr 100 (230)
T PRK09918 26 MVPETSVVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS--GSPLNT 100 (230)
T ss_pred EEEccEEEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC--CCCCCe
Confidence 6777778888853 4578999999999876666544221 25999999999999999999999875 245442
Q ss_pred CCCCeEEEEEEecCC
Q 028377 82 QCKDKFLLQSVKTND 96 (210)
Q Consensus 82 ~~kDKFlVqs~~~~~ 96 (210)
. --|-+-...+|+
T Consensus 101 E--s~f~l~v~~IP~ 113 (230)
T PRK09918 101 E--HLLRVSFEGVPP 113 (230)
T ss_pred e--EEEEEEEEEcCC
Confidence 2 224444444554
No 9
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.09 E-value=0.54 Score=35.72 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=36.0
Q ss_pred eEEEEEEeCCCCeEEEEEeecCCCcEEE-eCCCee-eCCCCeEEEEEEeccC
Q 028377 25 SCSLQLSNKTDNYVAFKVKTTNPKKYCV-RPNTGI-VLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 25 ~~~l~L~N~s~~~VaFKVKTT~P~~Y~V-rP~~Gi-I~P~~s~~V~Itlq~~ 74 (210)
...|+|.|++.++..|.|+...+..+.+ .|...+ |.||++..+.|.+...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEEC
Confidence 4799999999999999999998888888 775554 8999999998887754
No 10
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=92.50 E-value=1.7 Score=37.69 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=59.7
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCC----------cEEEeCCCeeeCCCCeEEEEEEeccCc
Q 028377 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPK----------KYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~----------~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 75 (210)
-|.|+|..+.|+.. .....|+|.|.++.++.-..-...-. -|.|-|+.--|+||+...|.|......
T Consensus 26 ~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~~ 102 (246)
T PRK09926 26 DIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAST 102 (246)
T ss_pred eEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCCC
Confidence 37788888888863 45789999999988776655443211 399999999999999999999987532
Q ss_pred cCCCCCCCCCeEEEEEEecCC
Q 028377 76 EAPPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 76 e~p~d~~~kDKFlVqs~~~~~ 96 (210)
.+|.|.. --|-+-.-.+|+
T Consensus 103 ~lP~DrE--Slf~lnv~eIP~ 121 (246)
T PRK09926 103 ALPKDRE--SVFWFNVLEVPP 121 (246)
T ss_pred CCCCCce--EEEEEEeeecCC
Confidence 3565422 224444444443
No 11
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=92.14 E-value=1.8 Score=37.72 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=53.0
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec------CC-----CcEEEeCCCeeeCCCCeEEEEEEeccC
Q 028377 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT------NP-----KKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT------~P-----~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 74 (210)
-|.|.|..+.|+.. .....|+|.|.++.++....-+. .| .-|.|-|+.--|+||+...|.|.....
T Consensus 29 ~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~ 105 (253)
T PRK15249 29 SVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNT 105 (253)
T ss_pred EEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCC
Confidence 37788888888753 35689999999987765554321 12 139999999999999999999998752
Q ss_pred ccCCCC
Q 028377 75 KEAPPD 80 (210)
Q Consensus 75 ~e~p~d 80 (210)
...|.|
T Consensus 106 ~~lP~D 111 (253)
T PRK15249 106 KKLPQD 111 (253)
T ss_pred CCCCCC
Confidence 235555
No 12
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=92.12 E-value=1.6 Score=37.72 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=57.4
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec------------CCCcEEEeCCCeeeCCCCeEEEEEEeccC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT------------NPKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT------------~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 74 (210)
|.+++..+.|+.. .....++|.|.++.+..=..... ...-|.|-|+.--|+||+...+.|.....
T Consensus 28 v~l~~TRvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~ 104 (236)
T PRK11385 28 VVVGGTRFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTES 104 (236)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECCC
Confidence 5677777888853 45789999999988644333211 11249999999999999999999998753
Q ss_pred ccCCCCCCCCCeEEEEEEecCC
Q 028377 75 KEAPPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 75 ~e~p~d~~~kDKFlVqs~~~~~ 96 (210)
..+|.|.. .-|-+-...+|+
T Consensus 105 ~~LP~DRE--Slf~lnv~~IPp 124 (236)
T PRK11385 105 DILPVDRE--TLFELSIASVPS 124 (236)
T ss_pred CCCCCCce--EEEEEEEEecCC
Confidence 24565522 334444444444
No 13
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=92.04 E-value=4.7 Score=34.49 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=58.6
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC--------CCcEEEeCCCeeeCCCCeEEEEEEeccCccC
Q 028377 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN--------PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEA 77 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~--------P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~ 77 (210)
-|.|+|..+.|+.. .-...|+|.|.++.++.-..-+.. ..-|.|-|+.--|+||+...|.|..... ..
T Consensus 23 ~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~l 98 (227)
T PRK15299 23 GINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-NL 98 (227)
T ss_pred eEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-CC
Confidence 37788888888864 356899999998876554432211 1249999999999999999999997753 35
Q ss_pred CCCCCCCCeEEEEEEecCC
Q 028377 78 PPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 78 p~d~~~kDKFlVqs~~~~~ 96 (210)
|.|.. .-|-+....+|+
T Consensus 99 P~DrE--slf~lnv~eIP~ 115 (227)
T PRK15299 99 PEDRE--SLYWLDIKSIPS 115 (227)
T ss_pred CCcce--EEEEEEeEecCC
Confidence 65522 234444444554
No 14
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=90.40 E-value=3.7 Score=35.42 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=57.8
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec------CCC----cEEEeCCCeeeCCCCeEEEEEEeccCcc
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT------NPK----KYCVRPNTGIVLPRSTCDIIVTMQAQKE 76 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT------~P~----~Y~VrP~~GiI~P~~s~~V~Itlq~~~e 76 (210)
|.|.+..+.|+.. .....|+|.|.++.++.=..-.. .|. -|.|-|+.--|+||+...|.|.......
T Consensus 12 v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~~ 88 (233)
T PRK15246 12 VNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQQ 88 (233)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCCC
Confidence 6788888888853 45689999999987644333111 111 4999999999999999999999875334
Q ss_pred CCCCCCCCCeEEEEEEecCC
Q 028377 77 APPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 77 ~p~d~~~kDKFlVqs~~~~~ 96 (210)
+|.|.. --|-+....+|+
T Consensus 89 LP~DRE--Slf~lnv~~IP~ 106 (233)
T PRK15246 89 LATDRE--SLFWLNIYQIPP 106 (233)
T ss_pred CCCCce--EEEEEEEEEcCC
Confidence 565422 234444444454
No 15
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=89.96 E-value=4.2 Score=35.03 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=57.1
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec------CCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT------NPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPD 80 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT------~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d 80 (210)
|.+++..+.|+.. .....++|.|.++.++.-..... ...-|.|-|+.-.|+||+...|.|...+. .+|.|
T Consensus 24 v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPKD 99 (229)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6677777888853 35789999999987654333221 11249999999999999999999998753 45655
Q ss_pred CCCCCeEEEEEEecCC
Q 028377 81 MQCKDKFLLQSVKTND 96 (210)
Q Consensus 81 ~~~kDKFlVqs~~~~~ 96 (210)
.. .-|-+-...+|+
T Consensus 100 RE--Slf~lnv~~IP~ 113 (229)
T PRK15211 100 RE--SLFWLNVQEIPP 113 (229)
T ss_pred ce--EEEEEEEEEcCC
Confidence 32 334444444443
No 16
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=89.71 E-value=4.5 Score=34.65 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=56.2
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC-------CCcEEEeCCCeeeCCCCeEEEEEEeccCccCCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN-------PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~-------P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~ 79 (210)
|.+++..+.|+.. .....++|.|.++.++.=..-... ..-|.|-|+.--|+||+...|.|..... .+|.
T Consensus 21 i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~LP~ 96 (226)
T PRK15295 21 IVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PLPA 96 (226)
T ss_pred EEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 6777888888863 346899999998876432221211 1259999999999999999999988753 3555
Q ss_pred CCCCCCeEEEEEEecCC
Q 028377 80 DMQCKDKFLLQSVKTND 96 (210)
Q Consensus 80 d~~~kDKFlVqs~~~~~ 96 (210)
|.. .-|-+-...+|+
T Consensus 97 DrE--slf~lnv~~IP~ 111 (226)
T PRK15295 97 DRE--SMYWLNIKGIPS 111 (226)
T ss_pred Cce--EEEEEEEEEcCC
Confidence 422 224444444444
No 17
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=88.77 E-value=4.9 Score=34.77 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=57.0
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec----------C----CCcEEEeCCCeeeCCCCeEEEEEEec
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT----------N----PKKYCVRPNTGIVLPRSTCDIIVTMQ 72 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT----------~----P~~Y~VrP~~GiI~P~~s~~V~Itlq 72 (210)
|.++...+.|+.. .....++|.|.++.+ |=|++. . ..-|.|-|+.--|+||+...+.|...
T Consensus 24 i~l~~TRvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 5667777888753 456899999999876 555541 1 11399999999999999999999987
Q ss_pred cCccCCCCCCCCCeEEEEEEecCC
Q 028377 73 AQKEAPPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 73 ~~~e~p~d~~~kDKFlVqs~~~~~ 96 (210)
+. .+|.|.. --|-+....+|+
T Consensus 99 ~~-~LP~DRE--Slf~lnv~~IPp 119 (234)
T PRK15192 99 GA-PLPADRE--SLFTLSIAAIPS 119 (234)
T ss_pred CC-CCCCcce--EEEEEEEEecCC
Confidence 53 4565522 334444444554
No 18
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=87.12 E-value=0.94 Score=35.09 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
.......+.|..|+.|++.|.+||.+|+.||
T Consensus 89 ~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 89 SSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3444566789999999999999999999997
No 19
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=86.84 E-value=8.9 Score=32.83 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=50.7
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCC--eEEEEEeecCC----CcEEEeCCCeeeCCCCeEEEEEEeccCccCCC
Q 028377 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDN--YVAFKVKTTNP----KKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~--~VaFKVKTT~P----~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~ 79 (210)
-|.+.|..+.|+.. .....++|.|.++. ++.+..-.... .-|.|-|+.--|+||+...|.|..... .+|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLPQ 97 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCCC
Confidence 47788888888863 35789999999863 34333222211 139999999999999999999987643 3555
Q ss_pred C
Q 028377 80 D 80 (210)
Q Consensus 80 d 80 (210)
|
T Consensus 98 D 98 (228)
T PRK15208 98 D 98 (228)
T ss_pred C
Confidence 4
No 20
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=86.59 E-value=8.9 Score=33.34 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=57.4
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCC-CeEEEEEeec--C--C---CcEEEeCCCeeeCCCCeEEEEEEeccCccCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTD-NYVAFKVKTT--N--P---KKYCVRPNTGIVLPRSTCDIIVTMQAQKEAP 78 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~-~~VaFKVKTT--~--P---~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p 78 (210)
|.+++..+.|+.. .....++|+|.++ .++.-..-.. + . .-|.|-|+.--|+||+...|.|...+...+|
T Consensus 39 v~l~~TRvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 6777778888853 4567999999986 4555444333 1 0 1499999999999999999999987532356
Q ss_pred CCCCCCCeEEEEEEecCC
Q 028377 79 PDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 79 ~d~~~kDKFlVqs~~~~~ 96 (210)
.|.. .-|-+-.-.+|+
T Consensus 116 ~DRE--Slf~lnv~eIPp 131 (243)
T PRK15290 116 DDRE--SVFWLNIKNIPP 131 (243)
T ss_pred CCee--EEEEEEEEEcCC
Confidence 5522 334444444454
No 21
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=85.92 E-value=2.8 Score=31.49 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=33.1
Q ss_pred CCeeeEEEEEEeCCCCeEEEEEeec-----C---CCcEE--EeC-----------CCeeeCCCCeEEEEEEeccC
Q 028377 21 KKQISCSLQLSNKTDNYVAFKVKTT-----N---PKKYC--VRP-----------NTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 21 ~k~~~~~l~L~N~s~~~VaFKVKTT-----~---P~~Y~--VrP-----------~~GiI~P~~s~~V~Itlq~~ 74 (210)
++..+..|+|+|.+++.+-|++.-. . .+.|. +.+ ..=.|+||++.+|.|++.+.
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 3457789999999999999998755 1 12222 111 12247899999999998874
No 22
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=85.24 E-value=2.4 Score=28.65 Aligned_cols=32 Identities=9% Similarity=0.202 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.+|+...+.++.-..+.++.||++|+.+++.|
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777888888887777654
No 23
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=84.77 E-value=1.5 Score=31.85 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=24.7
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 170 ~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
..+++++...+...+..+...|..|.++|++||+|..
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455566666666666666667778888888887753
No 24
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.64 E-value=3 Score=26.97 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
++-+.+....|..+-++|.++|+.|+.|+.++
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777777777777777654
No 25
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=83.79 E-value=15 Score=31.60 Aligned_cols=84 Identities=14% Similarity=0.299 Sum_probs=55.8
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCC--eEEEE-EeecC---CCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN--YVAFK-VKTTN---PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPD 80 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~--~VaFK-VKTT~---P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d 80 (210)
|.+++..+.|+.. .....++|+|.+++ ++... |.... ..-|.|-|+.--|+||+...|.|..... ..|.|
T Consensus 29 i~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP~D 104 (228)
T PRK15188 29 IALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLPTD 104 (228)
T ss_pred EEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6677788888863 45689999999864 33222 11111 1249999999999999999999998753 45655
Q ss_pred CCCCCeEEEEEEecCC
Q 028377 81 MQCKDKFLLQSVKTND 96 (210)
Q Consensus 81 ~~~kDKFlVqs~~~~~ 96 (210)
.. .-|-+....+|+
T Consensus 105 RE--Slf~lnv~~IP~ 118 (228)
T PRK15188 105 RE--SVFYLNSKAIPS 118 (228)
T ss_pred ce--EEEEEEEEecCC
Confidence 22 334444444554
No 26
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.42 E-value=22 Score=30.60 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=63.1
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec-------CCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT-------NPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT-------~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~ 79 (210)
+.|.+..+.|+.. .....++|.|.++.++.-.+..- ...-|.|-|+.-.|+||+...|.|...+. ..|.
T Consensus 29 v~i~~TRiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP~ 104 (235)
T COG3121 29 VVLGGTRIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLPA 104 (235)
T ss_pred EEecceEEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCCC
Confidence 5666777888864 34689999998889998885544 23469999999999999999999999986 4666
Q ss_pred CCCCCCeEEEEEEecCC
Q 028377 80 DMQCKDKFLLQSVKTND 96 (210)
Q Consensus 80 d~~~kDKFlVqs~~~~~ 96 (210)
|- -.-|-+..-.+|+
T Consensus 105 dr--Eslf~lnv~eIPp 119 (235)
T COG3121 105 DR--ESLFRLNVDEIPP 119 (235)
T ss_pred Cc--eeEEEEEeeecCC
Confidence 52 3455555555554
No 27
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=83.36 E-value=3 Score=28.94 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+..+.+.+..|+.+...+.++|.+|++|+..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666778888888888888888888887765
No 28
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=83.34 E-value=13 Score=31.86 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=49.3
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCC--eEEEEEeecC----CCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN--YVAFKVKTTN----PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPD 80 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~--~VaFKVKTT~----P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d 80 (210)
|.+++..+.|+.. ...+.++|.|.++. ++...--.+. ..-|.|-|+.--|+||+...|.|..... ..|.|
T Consensus 27 i~i~~TRvIy~~~---~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~D 102 (229)
T PRK15195 27 IALGATRVIYPAD---AKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAAD 102 (229)
T ss_pred EEECCeEEEEeCC---CceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6778888888853 23489999999864 3433211111 1259999999999999999999998753 34554
No 29
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=82.87 E-value=8.2 Score=28.11 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=41.3
Q ss_pred CCeeeEEEEEEeCCCCeEE-EEEeecCCCcEEEe--CCCe-eeCCCCeEEEEEEeccC
Q 028377 21 KKQISCSLQLSNKTDNYVA-FKVKTTNPKKYCVR--PNTG-IVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 21 ~k~~~~~l~L~N~s~~~Va-FKVKTT~P~~Y~Vr--P~~G-iI~P~~s~~V~Itlq~~ 74 (210)
+......+...|.+..++. |.+.-..|+-+.++ |..| .|.||+.+...+.+...
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~~ 74 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVENP 74 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEECC
Confidence 3467789999999988874 88888888877766 5544 79999887777777653
No 30
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=82.26 E-value=3.4 Score=38.15 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=40.2
Q ss_pred CCCeeeEEEEEEeCCCCeEEEEEeec------CC-CcEEEeCCCee--------------eCCCCeEEEEEEecc
Q 028377 20 LKKQISCSLQLSNKTDNYVAFKVKTT------NP-KKYCVRPNTGI--------------VLPRSTCDIIVTMQA 73 (210)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~VaFKVKTT------~P-~~Y~VrP~~Gi--------------I~P~~s~~V~Itlq~ 73 (210)
.++..+-++++||.++.+|-..==+| +| ..|...|+..- |.||++.+|.|..|.
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 36778889999999999998774444 44 44555554432 789999999999885
No 31
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=81.79 E-value=21 Score=30.98 Aligned_cols=85 Identities=9% Similarity=0.119 Sum_probs=54.8
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCC-CeEEEEEee--cC--C-CcEEEeCCCeeeCCCCeEEEEEEecc--CccCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTD-NYVAFKVKT--TN--P-KKYCVRPNTGIVLPRSTCDIIVTMQA--QKEAP 78 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~-~~VaFKVKT--T~--P-~~Y~VrP~~GiI~P~~s~~V~Itlq~--~~e~p 78 (210)
+.+++..+.|+.. .....++|.|.++ .++.=..-. .. + .-|.|-|+.--|+||+...|.|.... ...+|
T Consensus 18 v~l~~TRvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~lP 94 (239)
T PRK15254 18 VNVDRTRIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKLP 94 (239)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCCC
Confidence 6677778888853 4568999999975 344332221 11 1 24999999999999999999998763 22455
Q ss_pred CCCCCCCeEEEEEEecCC
Q 028377 79 PDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 79 ~d~~~kDKFlVqs~~~~~ 96 (210)
.|.. .-|-+-...+|+
T Consensus 95 ~DRE--Slf~lnv~~IP~ 110 (239)
T PRK15254 95 QDRE--TLFWFNVRGVPP 110 (239)
T ss_pred CCce--EEEEEEEEEcCC
Confidence 5422 334444444443
No 32
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.63 E-value=3.7 Score=29.19 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=10.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 028377 174 QDKSTEARALISKLKDEKNNAVQ 196 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~ 196 (210)
..++..|...|..|+.|...|.+
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke 32 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 33
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=80.41 E-value=2.9 Score=29.29 Aligned_cols=56 Identities=11% Similarity=0.281 Sum_probs=33.0
Q ss_pred CCeeeEEEEEEeCCCCeE-EEEEeecCCCcEE--EeCCC-eeeCCCCeEEEEEEeccCcc
Q 028377 21 KKQISCSLQLSNKTDNYV-AFKVKTTNPKKYC--VRPNT-GIVLPRSTCDIIVTMQAQKE 76 (210)
Q Consensus 21 ~k~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~--VrP~~-GiI~P~~s~~V~Itlq~~~e 76 (210)
+......++++|.++..+ ..++.-..|.-+. +.|.. +-|.||++..+.+.+.+...
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 445678899999987543 3555555688777 55553 47999999999999987543
No 34
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.73 E-value=3.4 Score=29.37 Aligned_cols=34 Identities=12% Similarity=0.304 Sum_probs=21.9
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 171 ~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
.+++++...+...++.+..-|.+|.++|++|++|
T Consensus 28 eELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 28 EELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555556666666666667777777777765
No 35
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=78.52 E-value=4.5 Score=30.63 Aligned_cols=32 Identities=6% Similarity=0.054 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+.++.+.+..+..|...+.++|..|+.|+.+|
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667777777777777777777777777654
No 36
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=78.01 E-value=4.2 Score=31.05 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=20.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
..+.++...+..|.+|-..|+-||..||+-|.
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666554
No 37
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=76.57 E-value=48 Score=28.43 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=54.5
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC------C----CcEEEeCCCeeeCCCCeEEEEEEeccCcc
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN------P----KKYCVRPNTGIVLPRSTCDIIVTMQAQKE 76 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~------P----~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e 76 (210)
|.++-..+.|+. .....+++|.|.++.+..=..-... | ..|.|-|+.-.|+||+...+.|..... .
T Consensus 20 i~l~~TRvIy~~---~~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~ 95 (226)
T PRK15218 20 IYIYGTRIIYPA---QKKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLAN-N 95 (226)
T ss_pred EEeCceEEEEcC---CCcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-C
Confidence 334444677774 2456789999999875332221111 1 149999999999999999999998753 4
Q ss_pred CCCCCCCCCeEEEEEEecCC
Q 028377 77 APPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 77 ~p~d~~~kDKFlVqs~~~~~ 96 (210)
+|.|. ---|-+-...+|+
T Consensus 96 LP~DR--ESlfwlnv~~IPp 113 (226)
T PRK15218 96 LPGDR--ESLFYLNVLDIPP 113 (226)
T ss_pred CCcce--eEEEEEEEEEcCC
Confidence 66652 2345555555555
No 38
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.79 E-value=7.9 Score=27.48 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=25.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.++-...++...-..|.+|+..|.++|++|++|-.
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777777778888888888888754
No 39
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=74.44 E-value=13 Score=26.69 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=31.3
Q ss_pred eeEEEEEEeCCCCeEEEEEee-----cCCCcEEEeCCCeeeCCCCeEEEEEEe
Q 028377 24 ISCSLQLSNKTDNYVAFKVKT-----TNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKT-----T~P~~Y~VrP~~GiI~P~~s~~V~Itl 71 (210)
..-.|+|.|.+...+.|.|.. ..|..|. |.||++..+.+-+
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y~~~~~~~~~-------v~ag~~~~~~w~l 65 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAYGGGGPWTYT-------VAAGQTVSLTWPL 65 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCcCCCCCEEEE-------ECCCCEEEEEEee
Confidence 367899999999999999997 3455555 4557777777766
No 40
>smart00340 HALZ homeobox associated leucin zipper.
Probab=74.33 E-value=6.6 Score=25.17 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 184 ISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 184 i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+.-|..--++|.++|.+||.|+..
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~e 30 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQE 30 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666654
No 41
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=74.00 E-value=9.7 Score=29.07 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=31.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.+...+.++.+.+..|......+.+||..||-|...|
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888999999999999999999999998876
No 42
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=72.85 E-value=16 Score=26.86 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=39.5
Q ss_pred CCCeeeEEEEEEeCCCCe--------EEEEEeecCCC--cEEEeCCCeeeCCCCeEEEEEEeccC
Q 028377 20 LKKQISCSLQLSNKTDNY--------VAFKVKTTNPK--KYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~--------VaFKVKTT~P~--~Y~VrP~~GiI~P~~s~~V~Itlq~~ 74 (210)
.++.....++++|+++.. .++-|-=|.-. ....+-..+-|.||++..+.+.+.+.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 577889999999999877 55555544332 25677888999999999999999875
No 43
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=72.14 E-value=65 Score=27.90 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=53.7
Q ss_pred EeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEee----cC---CCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCCC
Q 028377 9 IEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT----TN---PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (210)
Q Consensus 9 i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKT----T~---P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~ 81 (210)
++-..+.|+. ......++|.|.++.+ |-|++ .. ..-|.|-|+.--|+|++...|.|..... .+|.|.
T Consensus 32 l~~TRvIy~~---~~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~~-~LP~DR 105 (237)
T PRK15224 32 LGATRVIYHA---GTAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 105 (237)
T ss_pred eCceEEEEeC---CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCCce
Confidence 3334577774 2356889999998875 55554 11 1249999999999999999999998753 466652
Q ss_pred CCCCeEEEEEEecCC
Q 028377 82 QCKDKFLLQSVKTND 96 (210)
Q Consensus 82 ~~kDKFlVqs~~~~~ 96 (210)
. --|-+....+|+
T Consensus 106 E--SlFwlnv~~IPp 118 (237)
T PRK15224 106 E--TLQWVCIKAVPP 118 (237)
T ss_pred e--EEEEEEEEEcCC
Confidence 2 334444444554
No 44
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=71.80 E-value=12 Score=28.79 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=24.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
-..+.++.+.+..|-||-..|.-||..||+-|..
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777888888888777664
No 45
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=71.32 E-value=57 Score=28.46 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=52.2
Q ss_pred eCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEee----cC---CCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCCCC
Q 028377 10 EPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT----TN---PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQ 82 (210)
Q Consensus 10 ~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKT----T~---P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~ 82 (210)
+-..+.|+.. .....|+|.|.++.+ |-|++ .. ..-|.|-|+.-.|+|++...|.|..... .+|.|..
T Consensus 45 ~~TRvIy~~~---~~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~DRE 118 (246)
T PRK15233 45 GTTRVIYKED---APSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNKNEE 118 (246)
T ss_pred CceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCcCce
Confidence 3335666643 356899999988766 44443 11 1249999999999999999999998753 4665522
Q ss_pred CCCeEEEEEEecCC
Q 028377 83 CKDKFLLQSVKTND 96 (210)
Q Consensus 83 ~kDKFlVqs~~~~~ 96 (210)
--|-+....+|+
T Consensus 119 --Slfwlnv~~IPp 130 (246)
T PRK15233 119 --SLYWLCVKGVPP 130 (246)
T ss_pred --EEEEEEEEEcCC
Confidence 235555555554
No 46
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=70.59 E-value=11 Score=26.60 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
...+...+.+++.+...+..+|.+|+.|...+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888999998887654
No 47
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=70.38 E-value=16 Score=27.21 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=36.0
Q ss_pred CCCeeeEEEEEEeCCCCeEE-EEEeecCCCc--EEEeCC-CeeeCCCCeEEEEEEecc
Q 028377 20 LKKQISCSLQLSNKTDNYVA-FKVKTTNPKK--YCVRPN-TGIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~Va-FKVKTT~P~~--Y~VrP~-~GiI~P~~s~~V~Itlq~ 73 (210)
......-.++..|++..++. |.+.-..|+. ..+.|. ...|.|+..++-.+.+..
T Consensus 22 ~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 22 NPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp ETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 35677889999999988775 7777666664 555566 459999988876666554
No 48
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=70.01 E-value=75 Score=27.73 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=45.7
Q ss_pred EeCCeeeEeccCCCeeeEEEEEEeCCCC-eEEEE--EeecCCC----cEEEeCCCeeeCCCCeEEEEEEecc-CccCCCC
Q 028377 9 IEPLELKFPFELKKQISCSLQLSNKTDN-YVAFK--VKTTNPK----KYCVRPNTGIVLPRSTCDIIVTMQA-QKEAPPD 80 (210)
Q Consensus 9 i~P~eL~F~~~~~k~~~~~l~L~N~s~~-~VaFK--VKTT~P~----~Y~VrP~~GiI~P~~s~~V~Itlq~-~~e~p~d 80 (210)
++-..+.|+. ......++|.|.++. ++.-. |-..... -|.|-|+.-.|+||+...|.|...+ ...+|.|
T Consensus 29 l~~TRVIy~~---~~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~D 105 (250)
T PRK15285 29 PDRTRLVFRG---EDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQD 105 (250)
T ss_pred eCccEEEEcC---CCceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCC
Confidence 3334677775 345689999999864 33222 2211211 3999999999999999999999765 2335554
No 49
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=69.51 E-value=8 Score=36.86 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=26.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
-+.+.+.-+.+.+..++.|...+..||+.|++|.++|
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777777765
No 50
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=67.27 E-value=13 Score=25.44 Aligned_cols=32 Identities=28% Similarity=0.218 Sum_probs=25.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
++|-++...-.+|-.|..+|.+||..||.-|-
T Consensus 26 ~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 26 KRYNKVLLDRAALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778888899999999999987654
No 51
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.01 E-value=8.3 Score=32.75 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=20.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+++.++.+..+.++.|.+|...|.+|+..+|.|++
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666666666666666666554
No 52
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=66.89 E-value=5 Score=27.27 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=27.1
Q ss_pred EEEEeCCCCeEEEE-EeecCCCcEEEeCCCeeeCCCCeEEEEEEec
Q 028377 28 LQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQ 72 (210)
Q Consensus 28 l~L~N~s~~~VaFK-VKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq 72 (210)
|++.|+|..+|.|- ++....++=..-...+.|.|+++..+.+.-.
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~~~ 46 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLPAN 46 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETSTT
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEeccCC
Confidence 68999999999886 4444333322223444999999887765433
No 53
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=66.45 E-value=91 Score=27.35 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=51.7
Q ss_pred EeCCeeeEeccCCCeeeEEEEEEeCCCC-eEEEEE--eecC----CCcEEEeCCCeeeCCCCeEEEEEEecc-CccCCCC
Q 028377 9 IEPLELKFPFELKKQISCSLQLSNKTDN-YVAFKV--KTTN----PKKYCVRPNTGIVLPRSTCDIIVTMQA-QKEAPPD 80 (210)
Q Consensus 9 i~P~eL~F~~~~~k~~~~~l~L~N~s~~-~VaFKV--KTT~----P~~Y~VrP~~GiI~P~~s~~V~Itlq~-~~e~p~d 80 (210)
++-..+.|+. ......|+|.|.++. ++.-.. -... ..-|.|-|+.--|+||+...|.|...+ ...+|.|
T Consensus 30 l~~TRvIy~e---~~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP~D 106 (257)
T PRK15274 30 PDRTRVIFNG---NENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQD 106 (257)
T ss_pred eCceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCc
Confidence 3334677774 244689999999865 433222 1111 124999999999999999999999775 2345654
Q ss_pred CCCCCeEEEEEEecCC
Q 028377 81 MQCKDKFLLQSVKTND 96 (210)
Q Consensus 81 ~~~kDKFlVqs~~~~~ 96 (210)
.. --|-+-...+|+
T Consensus 107 RE--SlFwlNv~eIPp 120 (257)
T PRK15274 107 RE--SLFYFNVREIPP 120 (257)
T ss_pred ee--EEEEEEEEEcCC
Confidence 22 234444444444
No 54
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=66.38 E-value=13 Score=24.48 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
...++...+..|+.|...|.+++..|++|
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33455556666666666666666666554
No 55
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=66.37 E-value=12 Score=28.84 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=29.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+......+.+.+..|......+++||..||-|.+.|
T Consensus 13 le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~L 48 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAELLEENTALRLENDKL 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888899999999999999999997765
No 56
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=66.22 E-value=32 Score=25.39 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=33.7
Q ss_pred CCeeeEEEEEEeCCCCeEE-----EEEeecCCCcEEEeC---------CCeeeCCCCeEEEEEEecc
Q 028377 21 KKQISCSLQLSNKTDNYVA-----FKVKTTNPKKYCVRP---------NTGIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 21 ~k~~~~~l~L~N~s~~~Va-----FKVKTT~P~~Y~VrP---------~~GiI~P~~s~~V~Itlq~ 73 (210)
++-+.-.++++|.++..+. |++.+..-..|.... ..+-|.||++++..|.+.-
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 3456779999999998776 788877767777554 3478999999999988864
No 57
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=65.37 E-value=19 Score=24.31 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
...++...+..|+.|...|..++..|++++..|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777777777777776666554
No 58
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=65.31 E-value=92 Score=27.01 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=53.1
Q ss_pred EEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC------C----CcEEEeCCCeeeCCCCeEEEEEEeccCccC
Q 028377 8 SIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN------P----KKYCVRPNTGIVLPRSTCDIIVTMQAQKEA 77 (210)
Q Consensus 8 ~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~------P----~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~ 77 (210)
.++-..+.|+.. .....++|.|.++.++.=..-... | .-|.|-|+.-.|+|++...|.|...+. .+
T Consensus 36 ~l~~TRvIy~~~---~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~L 111 (242)
T PRK15253 36 VIYGTRVIYPAE---KKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPN-SL 111 (242)
T ss_pred EeCceEEEEeCC---CceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-CC
Confidence 333345777752 356789999999875433221111 1 249999999999999999999987653 46
Q ss_pred CCCCCCCCeEEEEEEecCC
Q 028377 78 PPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 78 p~d~~~kDKFlVqs~~~~~ 96 (210)
|.|. ---|-+-...+|+
T Consensus 112 P~DR--ESlfwlnv~~IPp 128 (242)
T PRK15253 112 PDNK--ESLFYLNVLDIPP 128 (242)
T ss_pred Ccce--eEEEEEEEEEcCC
Confidence 6552 2334444445554
No 59
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=64.10 E-value=11 Score=33.11 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=31.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
..+.+..|....+..|+.|.+.|+.++.+|++||..+
T Consensus 212 ~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 212 KRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888899999999999999999999998754
No 60
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=64.07 E-value=14 Score=26.78 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=29.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.+..+...|...|.-|.-|...+.++|..|.+|.+.
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999887543
No 61
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=63.39 E-value=18 Score=26.37 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+..+...+.++..|...+.++|.+|+-|..++
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666678999999999999999999887764
No 62
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=63.32 E-value=37 Score=31.51 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=40.4
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcE----------------------EEeCCCeeeCCCCe
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKY----------------------CVRPNTGIVLPRST 64 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y----------------------~VrP~~GiI~P~~s 64 (210)
+.++-..-.|.- .++.....|+++|+++.+|-..==+|+.-+| .|.|+ +-|.||++
T Consensus 249 V~~~v~~A~Y~v-pgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRV-PGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGET 326 (381)
T ss_dssp EEEEEEEEEEES-SSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-E
T ss_pred eEEEEeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCce
Confidence 344444445654 4788899999999999999877444433333 33443 35899999
Q ss_pred EEEEEEecc
Q 028377 65 CDIIVTMQA 73 (210)
Q Consensus 65 ~~V~Itlq~ 73 (210)
.+|.|++|.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999975
No 63
>smart00338 BRLZ basic region leucin zipper.
Probab=63.15 E-value=17 Score=24.67 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 179 EARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
++...+..|+.|...|..++..|+.|+.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555545444444443
No 64
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=62.48 E-value=19 Score=23.55 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 180 ARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
-...+..|..+...|..+|..|++++..|
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35588899999999999999999998765
No 65
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.29 E-value=13 Score=26.42 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=24.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+..+...+...|.-|.-|...|.+.|+.|++|.
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~ 41 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 345667777888888888888888888777764
No 66
>smart00338 BRLZ basic region leucin zipper.
Probab=62.17 E-value=22 Score=24.00 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=18.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+......+.+....|..+...+..++..|++++
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555666655555554
No 67
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=61.97 E-value=25 Score=21.09 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 185 SKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 185 ~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.+|..|++.|+...++|++.|+.|
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeql 27 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888765
No 68
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=61.12 E-value=74 Score=24.51 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=22.3
Q ss_pred ccCCCeeeEEEEEEeCCCCeEEEEEe
Q 028377 18 FELKKQISCSLQLSNKTDNYVAFKVK 43 (210)
Q Consensus 18 ~~~~k~~~~~l~L~N~s~~~VaFKVK 43 (210)
...+....-.|+|+|.+++.+-|+|.
T Consensus 23 ~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred eCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 45567778899999999999999987
No 69
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=59.62 E-value=25 Score=24.56 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
...+.+.+..+..||..+++.|..-++.++.|+
T Consensus 23 N~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 23 NRLLRAQEKTWREERAQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777776666654
No 70
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=59.06 E-value=22 Score=26.18 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=35.8
Q ss_pred CeeeEEEEEEeCCCCeE-EEEEeecCC-----------------CcEEEeCC--CeeeCCCCeEEEEEEecc
Q 028377 22 KQISCSLQLSNKTDNYV-AFKVKTTNP-----------------KKYCVRPN--TGIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 22 k~~~~~l~L~N~s~~~V-aFKVKTT~P-----------------~~Y~VrP~--~GiI~P~~s~~V~Itlq~ 73 (210)
......|+|+|.++..| .++|.=+-| ..|.|+|. .+.|.||+++.+-+....
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 34556889999887765 244443323 57888876 479999999887666554
No 71
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=58.85 E-value=68 Score=30.31 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=38.6
Q ss_pred eeeEEEEEEeCCCCeEEEEEeecCCCcEEEe-C-CCeeeCCCCeEEEEEEeccC
Q 028377 23 QISCSLQLSNKTDNYVAFKVKTTNPKKYCVR-P-NTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 23 ~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~Vr-P-~~GiI~P~~s~~V~Itlq~~ 74 (210)
.-...++|.|++.++..|.++........+. + +.=.|+||+..++.|++...
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEec
Confidence 3457999999999988888887755544433 2 23478999999888887654
No 72
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=58.58 E-value=30 Score=23.66 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
+-.+-+...|..|.+..+.|..||.-||+-
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445667788888988888888889888873
No 73
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=57.95 E-value=59 Score=23.71 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=32.8
Q ss_pred EEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEe
Q 028377 8 SIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 8 ~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itl 71 (210)
.++|+++..+. + ....|.++|.++....|.+..- .+ ...|.||++..+.++-
T Consensus 31 ~f~P~~i~v~~--G--~~v~l~~~N~~~~~h~~~i~~~-----~~---~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 31 GFSPSTITVKA--G--QPVTLTFTNNDSRPHEFVIPDL-----GI---SKVLPPGETATVTFTP 82 (104)
T ss_dssp EEES-EEEEET--T--CEEEEEEEE-SSS-EEEEEGGG-----TE---EEEE-TT-EEEEEEEE
T ss_pred eEecCEEEEcC--C--CeEEEEEEECCCCcEEEEECCC-----ce---EEEECCCCEEEEEEcC
Confidence 56777776553 2 3356999999988888887761 11 2579999999998853
No 74
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.61 E-value=29 Score=22.32 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=29.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
.++..++.+.+.-..|..|...|+.|...|+..|
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677788888899999999999999999988765
No 75
>PRK14127 cell division protein GpsB; Provisional
Probab=57.27 E-value=26 Score=26.92 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=20.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+=++++......|..|...|.++|..|+++|..
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666666666666653
No 76
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=56.16 E-value=26 Score=31.58 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=30.7
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 170 ~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
..+..++|.+++-.-..|-.|+.++.-|+.-|+.+|+-|
T Consensus 86 l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~ 124 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEEL 124 (302)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888888888888888888888877643
No 77
>smart00637 CBD_II CBD_II domain.
Probab=56.02 E-value=72 Score=22.78 Aligned_cols=48 Identities=8% Similarity=0.201 Sum_probs=30.7
Q ss_pred eeEEEEEEeCCCCeE-----EEEEee-------------cCCCcEEEeCC--CeeeCCCCeEEEEEEe
Q 028377 24 ISCSLQLSNKTDNYV-----AFKVKT-------------TNPKKYCVRPN--TGIVLPRSTCDIIVTM 71 (210)
Q Consensus 24 ~~~~l~L~N~s~~~V-----aFKVKT-------------T~P~~Y~VrP~--~GiI~P~~s~~V~Itl 71 (210)
....|+|+|.++.++ .|.+-- .....|.|+|. .+.|.||+++.+-+..
T Consensus 8 ~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 8 FTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred EEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEe
Confidence 456788888766443 333211 02236999875 4899999988876665
No 78
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=55.17 E-value=72 Score=22.86 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=12.8
Q ss_pred eeEEEEEEeCCCCeEEEEEee
Q 028377 24 ISCSLQLSNKTDNYVAFKVKT 44 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKT 44 (210)
+...|+|+|.+++.|-+..-|
T Consensus 2 v~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCC
Confidence 345677788877777776654
No 79
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=54.19 E-value=17 Score=29.74 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=26.2
Q ss_pred EEEeecCCCcEEEeCCCee--eCCCCeEEEEEEecc
Q 028377 40 FKVKTTNPKKYCVRPNTGI--VLPRSTCDIIVTMQA 73 (210)
Q Consensus 40 FKVKTT~P~~Y~VrP~~Gi--I~P~~s~~V~Itlq~ 73 (210)
|+|.--+-..|++.|.-|+ |.||+++.|.+.-..
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 6777778889999999998 899999999998665
No 80
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=51.94 E-value=81 Score=25.37 Aligned_cols=50 Identities=14% Similarity=0.319 Sum_probs=34.8
Q ss_pred CeeeEEEEEEeCCCCeE-EEEEeecC-CC--cEEEeCCCeeeCCCCeEEEEEEe
Q 028377 22 KQISCSLQLSNKTDNYV-AFKVKTTN-PK--KYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 22 k~~~~~l~L~N~s~~~V-aFKVKTT~-P~--~Y~VrP~~GiI~P~~s~~V~Itl 71 (210)
+-+.-.|+++|.++..+ --+|.... +. +-.--|..+.|.||+++++.+-.
T Consensus 85 ~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 85 SMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred CcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 34566899999999766 34444444 22 34444889999999998877654
No 81
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=51.10 E-value=18 Score=33.10 Aligned_cols=10 Identities=0% Similarity=0.033 Sum_probs=5.1
Q ss_pred eEEEeEEEEe
Q 028377 117 EECKLRVIYV 126 (210)
Q Consensus 117 ~e~KLrv~~~ 126 (210)
+.+.++|.+.
T Consensus 7 ~~~~~~~~~~ 16 (420)
T PF07407_consen 7 QMKNMKCTLK 16 (420)
T ss_pred ecccceeEEE
Confidence 3444556554
No 82
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.89 E-value=37 Score=22.84 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=19.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
.+.....++......|..+...|.+++..|+.|+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555566666666666666666666553
No 83
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=50.74 E-value=1.1e+02 Score=26.92 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=24.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
|+.+.|+...|..|+||-..|.-+|+.||.....|
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777788888888777777777776655443
No 84
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=50.49 E-value=1.7e+02 Score=25.36 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=58.1
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEee---cCC---------------CcEEEeCCCeeeCCCCeEEEE
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT---TNP---------------KKYCVRPNTGIVLPRSTCDII 68 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKT---T~P---------------~~Y~VrP~~GiI~P~~s~~V~ 68 (210)
|.|.|-.+.+.. ..+..+.++|.|.++.+..++|.. ++| .--.+-|..-.|.||++..|.
T Consensus 18 l~V~Pi~~~i~a--~~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~IR 95 (234)
T PRK15308 18 MLVYPMAAEIGA--GREEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTVR 95 (234)
T ss_pred EEEEEeEEEecC--CCcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEEE
Confidence 678887666553 224568999999999888777652 232 236788999999999999999
Q ss_pred EEeccCccCCCCCCCCCeEEEEEEecCC
Q 028377 69 VTMQAQKEAPPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 69 Itlq~~~e~p~d~~~kDKFlVqs~~~~~ 96 (210)
|..... + + .-.-|.|...++++
T Consensus 96 li~lg~---~-~--kE~~YRl~~~pvp~ 117 (234)
T PRK15308 96 VISLQA---P-E--REEAWRVYFEPVAE 117 (234)
T ss_pred EEEcCC---C-C--cEEEEEEEEEecCC
Confidence 887652 2 1 23557777777765
No 85
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=50.47 E-value=20 Score=30.78 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=29.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
..+++...+..+...+..|-+.|.+++++||.++++
T Consensus 176 ~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 176 KAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 344566777888899999999999999999998875
No 86
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=50.32 E-value=35 Score=25.22 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 181 RALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
...|..|..+.+.+.++|.+|+.+|+.
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888999999988887764
No 87
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=48.88 E-value=1e+02 Score=25.48 Aligned_cols=54 Identities=13% Similarity=0.248 Sum_probs=37.5
Q ss_pred CCCeeeEEEEEEeCCCCeEEEEEeecC----CCcEEEeC-----CCeeeCCCCeEEEEEEeccC
Q 028377 20 LKKQISCSLQLSNKTDNYVAFKVKTTN----PKKYCVRP-----NTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~VaFKVKTT~----P~~Y~VrP-----~~GiI~P~~s~~V~Itlq~~ 74 (210)
.++.+...++|.|.++. -||.|+-+. +..|-+-- ....|+||+++.-.+++.|.
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK 98 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee
Confidence 36778899999999877 799999887 23444321 13566777777666666653
No 88
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=48.81 E-value=32 Score=26.51 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
.++.+.+..|-+|-..|+=+|.+||+-|
T Consensus 25 ~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 25 GGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 3444455555555555555555555544
No 89
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=48.51 E-value=35 Score=24.72 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=30.4
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 170 ~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
..+++..+..+...|....+|-..|..+|+-||+=+..|
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777888888888888889999998888755443
No 90
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=47.50 E-value=32 Score=24.75 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028377 184 ISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 184 i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
|..|++|...|.+++++|..||.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq 24 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQ 24 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554
No 91
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=46.75 E-value=46 Score=29.47 Aligned_cols=14 Identities=43% Similarity=0.425 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHh
Q 028377 193 NAVQQNNKLRQDLV 206 (210)
Q Consensus 193 ~~~~~~~~L~~el~ 206 (210)
.+.+||++||+.|.
T Consensus 95 ~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 95 NLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHhc
Confidence 37888888888664
No 92
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=45.81 E-value=38 Score=24.51 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=31.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
.+++....+...|.+|.++...+..+...++.+|..+|
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~ 103 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELF 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677888999999999999999999999988775
No 93
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=45.65 E-value=41 Score=32.04 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=31.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
+..+|+.+.+.+|+.|...+.+.|++.+..|.+|.
T Consensus 401 dddDEvlaeLR~lqaeLk~vS~~N~k~k~~Ll~la 435 (516)
T KOG4191|consen 401 DDDDEVLAELRKLQAELKAVSAHNRKKKHDLLRLA 435 (516)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 45789999999999999999999999999888763
No 94
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=45.38 E-value=50 Score=28.62 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=16.3
Q ss_pred cchHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 028377 175 DKSTEARALISKLKDEKN---NAVQQNNKLRQDL 205 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~---~~~~~~~~L~~el 205 (210)
+...++.+++..|+.+.. .+.+||++||+.|
T Consensus 76 ~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 76 EENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555544444 5566666666654
No 95
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=44.63 E-value=45 Score=23.28 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=25.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
..+.+.+...+..|..|-..|+++...++.|-..|
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L 40 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWREERAQL 40 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888887777777765544
No 96
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=44.18 E-value=36 Score=29.87 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 179 EARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.-.+-..+++.|...|.++|++||-|.++|
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~L 116 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSL 116 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888888888888888887765
No 97
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=43.06 E-value=57 Score=24.65 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.++-.++..|..+...|.++|..|++++..|
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l 51 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEEL 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666665543
No 98
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=43.02 E-value=1.1e+02 Score=26.62 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
.+..|+.+.+.++..+...|++|..+||.....||
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555444
No 99
>smart00340 HALZ homeobox associated leucin zipper.
Probab=42.94 E-value=55 Score=21.00 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 180 ARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+..-+..|++|-..|..+.+.||-
T Consensus 10 LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 10 LKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456889999999999999999884
No 100
>PF14802 TMEM192: TMEM192 family
Probab=42.72 E-value=80 Score=27.39 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 179 EARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.+.+.+.|..+=...|+++|.+|++++..+
T Consensus 206 ~~eellEkQadlI~yLk~hn~~L~~ril~l 235 (236)
T PF14802_consen 206 SLEELLEKQADLIRYLKEHNARLSRRILAL 235 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567777788889999999999998765
No 101
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.21 E-value=41 Score=29.35 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.++...|..|..|...|+.+++.++.+|+.|
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4667777777888888877777777777664
No 102
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=42.21 E-value=1e+02 Score=21.40 Aligned_cols=55 Identities=7% Similarity=0.035 Sum_probs=35.1
Q ss_pred CCCeeeEEEEEEeCCCCe-EEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccC
Q 028377 20 LKKQISCSLQLSNKTDNY-VAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~-VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 74 (210)
.+....-.++|+|.+... =.|+|+-...+...-.-..+-|.||++..|.+++.+.
T Consensus 17 ~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 17 PGEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 356788899999997643 4577764444433333334778999999998888864
No 103
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.56 E-value=43 Score=28.43 Aligned_cols=30 Identities=7% Similarity=0.119 Sum_probs=14.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+....++.+.+..+..|.+.|..+|..++.
T Consensus 138 ~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 138 KEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 104
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=41.39 E-value=69 Score=24.70 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=29.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+....-.+.+.++.|.....+++++|..||=|.+.|
T Consensus 13 le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~L 48 (114)
T COG4467 13 LEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKL 48 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH
Confidence 344566788899999999999999999999988765
No 105
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=39.51 E-value=47 Score=29.01 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=30.1
Q ss_pred HHHHhhhh-hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 162 AAARAFTE-RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 162 ~~~~~~~~-~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
++..-|.. ..|+++......+.+..|+.|.++|...|.+|-+.+
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34434443 356666777777888888888888888888876654
No 106
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.47 E-value=52 Score=24.68 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=31.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
..+++...+...|..|++....+..+...+|++|..|+
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667778899999999999999999999988775
No 107
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=39.23 E-value=1.3e+02 Score=22.09 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=24.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+...++.+.+..|.++...+-.+...+..++..+
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777777777654
No 108
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=38.63 E-value=73 Score=23.69 Aligned_cols=30 Identities=33% Similarity=0.245 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.+..+.|-.|-++...|+++++.|++.|.+
T Consensus 67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 67 WPGIAVALTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999997654
No 109
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=38.13 E-value=40 Score=30.35 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 183 LISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.+.+|.+|+..|..|.++|+.+|+.
T Consensus 220 RLkKl~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 220 RLKKLADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999963
No 110
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=37.72 E-value=38 Score=24.00 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
.+-+...|.+|..||+.+++...+||
T Consensus 45 ~DAA~RViArl~kErd~ar~~l~~l~ 70 (70)
T PF08606_consen 45 HDAACRVIARLLKERDEAREALAELQ 70 (70)
T ss_pred HhHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 34456688999999999988877664
No 111
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.64 E-value=71 Score=26.25 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028377 186 KLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 186 ~l~~E~~~~~~~~~~L~~el~ 206 (210)
+|.+|...|.++|..|+.|+.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~ 128 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELE 128 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 112
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=37.64 E-value=91 Score=21.80 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 028377 189 DEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 189 ~E~~~~~~~~~~L~~el~ 206 (210)
.|...|.+++.-|++||+
T Consensus 47 ~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 47 EENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 113
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=37.47 E-value=81 Score=27.42 Aligned_cols=42 Identities=7% Similarity=0.124 Sum_probs=29.1
Q ss_pred EEEEEeCCCCeEEEE-EeecCCCcEEEeCCCeeeCCCCeEEEEE
Q 028377 27 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 27 ~l~L~N~s~~~VaFK-VKTT~P~~Y~VrP~~GiI~P~~s~~V~I 69 (210)
.|+++|+|..++.|. ++....+ -.+....|+|.|+++..+.+
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEc
Confidence 599999999999876 4322222 12223468999999998875
No 114
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=37.08 E-value=80 Score=25.10 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 028377 187 LKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 187 l~~E~~~~~~~~~~L~~el~ 206 (210)
|+.++..|.+|..+|++|+.
T Consensus 79 LE~~k~~L~qqv~~L~~e~s 98 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENS 98 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 115
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=36.84 E-value=53 Score=25.00 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028377 182 ALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+.+.+|..|...|..|+.-|++
T Consensus 78 ~ei~~L~~el~~L~~E~diLKK 99 (121)
T PRK09413 78 KQIKELQRLLGKKTMENELLKE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 116
>PRK14127 cell division protein GpsB; Provisional
Probab=36.39 E-value=85 Score=24.05 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+..+.+.+..|++|...+.+++..++.++
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555666677777777777766666654
No 117
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=36.26 E-value=77 Score=22.70 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=24.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.-...++ +.+-.|.++...+.+|+..||+.|-+
T Consensus 58 g~~l~~i-~~~l~l~~~~~~l~~~l~~l~~~~~~ 90 (91)
T cd04766 58 GVNLAGV-KRILELEEELAELRAELDELRARLRR 90 (91)
T ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455 45556999999999999999988754
No 118
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=35.92 E-value=62 Score=24.38 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=24.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
..+....++.+.+.+|..+...|.++...|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34556677778888888888888888888876
No 119
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.68 E-value=49 Score=23.16 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
...++...+.+|.+|...+.+++..++
T Consensus 41 ~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 41 QLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555566666666666666655544
No 120
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=35.31 E-value=1.3e+02 Score=20.34 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
..++...|..|..+.+.++.+.+..++|-.|
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666543
No 121
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=34.75 E-value=37 Score=23.34 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 028377 190 EKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 190 E~~~~~~~~~~L~~el~~ 207 (210)
++..+.+|+..||+||.+
T Consensus 3 ~~~~l~~ei~~L~~el~~ 20 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELER 20 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 455667777778887754
No 122
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.73 E-value=78 Score=27.19 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=32.6
Q ss_pred EEEEEEeCCCCeEEEE--EeecCCCcEEEeCCCeeeCCCCeEEEEEEe
Q 028377 26 CSLQLSNKTDNYVAFK--VKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 26 ~~l~L~N~s~~~VaFK--VKTT~P~~Y~VrP~~GiI~P~~s~~V~Itl 71 (210)
..|++.|+|..+|.|- .-+. .++-.. -+.+.|.|+++..+.+.-
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l~~ 210 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPLPS 210 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeecCC
Confidence 6899999999999998 4433 333333 778999999988865543
No 123
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.33 E-value=62 Score=21.66 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 185 SKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 185 ~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
-++..+..++.++.+++++|++.+
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555566666666666666543
No 124
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.20 E-value=73 Score=23.87 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=28.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
+.+...+...+.+|+++...+.++...|+.++..++
T Consensus 93 ~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 93 KKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445667777888888888888888888888887765
No 125
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=34.16 E-value=90 Score=32.25 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=15.3
Q ss_pred HHhhcccCCCeeeEEEeEEEEeCC
Q 028377 105 AEMFNKEAGHVVEECKLRVIYVSP 128 (210)
Q Consensus 105 ~~~f~k~~~~~v~e~KLrv~~~~p 128 (210)
|+||.. +.+.+++=+|+|+++
T Consensus 262 Pnf~~~---sdl~~~~~pvv~i~~ 282 (980)
T KOG0980|consen 262 PNFLRQ---SDLESYITPVVYIPS 282 (980)
T ss_pred cccccc---cchhhcCCCceecCC
Confidence 477764 347889999999943
No 126
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=33.36 E-value=1.7e+02 Score=20.36 Aligned_cols=59 Identities=7% Similarity=0.063 Sum_probs=38.5
Q ss_pred CeeeEeccCCCeeeEEEEEEeCCC--CeEEEEEeec---CCCcEEEeCCCeeeCCCCeEEEEEEe
Q 028377 12 LELKFPFELKKQISCSLQLSNKTD--NYVAFKVKTT---NPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 12 ~eL~F~~~~~k~~~~~l~L~N~s~--~~VaFKVKTT---~P~~Y~VrP~~GiI~P~~s~~V~Itl 71 (210)
-.+.+...........|.|.|-.. ......|.+. ..+.|.+.++.+ |.++....|.|.-
T Consensus 15 ~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~-l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 15 ITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD-LPSGGDYFIQIVN 78 (93)
T ss_pred EEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC-CCCCCcEEEEEEE
Confidence 367777654456778999998765 2223444422 237899998776 5666678887773
No 127
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=33.06 E-value=51 Score=29.51 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 180 ARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+......|.+|++.+++|++.|+.+++
T Consensus 37 l~~~~~~lr~e~~~l~~~~~~~~~~~~ 63 (308)
T PF11382_consen 37 LEDQFDSLREENDELRAELDALQAQLN 63 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555543
No 128
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=32.90 E-value=61 Score=31.84 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=26.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
....++.+.+.+|.++++++.++.++|+++++++
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777788888888888888888888887754
No 129
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=32.36 E-value=65 Score=28.25 Aligned_cols=25 Identities=32% Similarity=0.259 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKL 201 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L 201 (210)
..++.+.|+.|++|...|+.|..++
T Consensus 117 ~~~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 117 NEAALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999998775
No 130
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.20 E-value=98 Score=28.51 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=30.4
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 171 ~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
++.+++|.++...|+.++.|.+.+.+++.+.+++++.
T Consensus 283 s~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 283 SEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888999999999999999888888763
No 131
>COG1470 Predicted membrane protein [Function unknown]
Probab=32.12 E-value=4.8e+02 Score=25.29 Aligned_cols=99 Identities=14% Similarity=0.255 Sum_probs=62.7
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeE-EEEEeecCCCcEEE--eCC-CeeeCCCCeEEEEEEeccCccCCCCC
Q 028377 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYV-AFKVKTTNPKKYCV--RPN-TGIVLPRSTCDIIVTMQAQKEAPPDM 81 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~V--rP~-~GiI~P~~s~~V~Itlq~~~e~p~d~ 81 (210)
+|.++-.-++-....+......+.|.|.++-++ --|++-..|.-..+ .|+ .--|+||++.+|.+|... |++.
T Consensus 381 ~v~l~~g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~v----P~~a 456 (513)
T COG1470 381 LVKLDNGPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITV----PEDA 456 (513)
T ss_pred eEEccCCcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEc----CCCC
Confidence 344443323333334566778899999987444 34555556665554 465 557889999999999885 4555
Q ss_pred CCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEe
Q 028377 82 QCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (210)
Q Consensus 82 ~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~ 126 (210)
...|++.--.+..+. . -++.+|||+-.
T Consensus 457 ~aGdY~i~i~~ksDq-------~-----------s~e~tlrV~V~ 483 (513)
T COG1470 457 GAGDYRITITAKSDQ-------A-----------SSEDTLRVVVG 483 (513)
T ss_pred CCCcEEEEEEEeecc-------c-----------cccceEEEEEe
Confidence 567887766655431 1 24678888876
No 132
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=32.00 E-value=77 Score=28.77 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=27.2
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 170 ~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.+++++++..+..-+++-|++.+....+..+++||+++
T Consensus 289 lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 289 LSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666777777888888888888888875
No 133
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=31.86 E-value=1.5e+02 Score=21.49 Aligned_cols=61 Identities=11% Similarity=0.167 Sum_probs=33.5
Q ss_pred cceEEeCCeeeEeccCCCeeeEEEEEEeCCC--CeEEEEEeecCCCcEEEeC----CCeeeCCCCeEEEEEEe
Q 028377 5 ELLSIEPLELKFPFELKKQISCSLQLSNKTD--NYVAFKVKTTNPKKYCVRP----NTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 5 ~lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~--~~VaFKVKTT~P~~Y~VrP----~~GiI~P~~s~~V~Itl 71 (210)
.-+.++|++|.+..- ..++++|.+. +.+.|.=.......-...+ +.+.+.||++.++.++-
T Consensus 10 g~~~F~P~~i~v~~G------~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 10 GALVFEPAKISIAAG------DTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred CceeEeCCEEEECCC------CEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC
Confidence 346788888887642 2367888753 4455532111111101111 34578899998886553
No 134
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=31.71 E-value=57 Score=20.95 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+-+...|..|+.+...|+.+|-.||.+..
T Consensus 17 s~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 17 SALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp -------------HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34556788888888888888888888753
No 135
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=31.71 E-value=87 Score=25.75 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=36.2
Q ss_pred eeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEE
Q 028377 24 ISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVT 70 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~It 70 (210)
.....-|.|-|+.++.|-.-+...+.|.+| +.|.|.|+..+-|.-.
T Consensus 18 T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef 63 (162)
T PF09640_consen 18 TRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEF 63 (162)
T ss_dssp --EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE
T ss_pred CceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhc
Confidence 446778999999999999999988899988 6899999988877543
No 136
>PF13205 Big_5: Bacterial Ig-like domain
Probab=30.63 E-value=2e+02 Score=20.39 Aligned_cols=56 Identities=13% Similarity=0.295 Sum_probs=35.4
Q ss_pred eeeEeccCCC-eeeEEEEEEe--CCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEe
Q 028377 13 ELKFPFELKK-QISCSLQLSN--KTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 13 eL~F~~~~~k-~~~~~l~L~N--~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itl 71 (210)
.|.|..+... .....+.+.+ ....+|.+. ....+.+.+.|. +-|.+|..+.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECC
Confidence 4667666433 3344556643 334555555 444488999998 557889999988854
No 137
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=30.54 E-value=3e+02 Score=22.50 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=38.4
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCcEEEeCC-CeeeCCC-CeEEEEEEeccCccCCCCCCCCCeEEEEE
Q 028377 26 CSLQLSNKTDNYVAFKVKTTNPKKYCVRPN-TGIVLPR-STCDIIVTMQAQKEAPPDMQCKDKFLLQS 91 (210)
Q Consensus 26 ~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~-~GiI~P~-~s~~V~Itlq~~~e~p~d~~~kDKFlVqs 91 (210)
-.|.|+........|+|..+ ..|.|+ .+++.+. ...-.-||+-|+.... ....++|+|++
T Consensus 113 D~I~v~~~~g~~~~Y~V~~~----~iV~~~d~~v~~~~~~~~LtLiTC~Pf~~~~--~~~~~R~vV~A 174 (174)
T TIGR03784 113 DVIRLQTPDGQWQSYQVTAT----RVVDESETGLDLPADDSQLVLITCYPFDALG--SGGPLRYVVEA 174 (174)
T ss_pred CEEEEEECCCeEEEEEEeEE----EEECCccceeccCCCCCEEEEEeCCCCCCCC--CCCCcEEEEEC
Confidence 46778877777778888765 456665 4555543 3455567888864321 13578998863
No 138
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=30.46 E-value=50 Score=24.63 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=27.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
+.+...+...+.+|.++...+..+...+++.+.+++
T Consensus 83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 83 KKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777888888888888888888888887765
No 139
>PLN02678 seryl-tRNA synthetase
Probab=30.37 E-value=1.4e+02 Score=28.42 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=26.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
+...++.+.+..|.+|...+..+...++++|..++
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777788888888888888888888877653
No 140
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=30.27 E-value=1.6e+02 Score=19.98 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
.+++...|+.|....+.|.++...||.+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 141
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=30.17 E-value=98 Score=26.78 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNN---KLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~---~L~~el~~~ 208 (210)
+.++.+...+|++|...+..++. .|++|.++|
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L 105 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARL 105 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666555555 345555443
No 142
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=30.06 E-value=76 Score=21.80 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028377 186 KLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 186 ~l~~E~~~~~~~~~~L~~el~ 206 (210)
.+--|||.|..+.-.|++||.
T Consensus 7 ~VL~ERNeLK~~v~~leEEL~ 27 (60)
T PF11461_consen 7 EVLQERNELKARVFLLEEELA 27 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777777777764
No 143
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=29.99 E-value=90 Score=24.82 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 179 EARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
++.+.=..|..|...|.++|..++.|++
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555554
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=29.96 E-value=71 Score=29.66 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=29.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
++.....+...+..|+.+.+++.++..+|+.||.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888899999999999999999998875
No 145
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.85 E-value=87 Score=28.16 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
-.++.+.+.+|+.|+..+.+|...|+.|+..
T Consensus 59 e~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 59 EEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666544
No 146
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=29.61 E-value=2.2e+02 Score=21.95 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=30.5
Q ss_pred CeeeEEEEEEeCCCCeEEE---EEee------------cCCCcEEEeC--CCeeeCCCCeEEEEEEecc
Q 028377 22 KQISCSLQLSNKTDNYVAF---KVKT------------TNPKKYCVRP--NTGIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 22 k~~~~~l~L~N~s~~~VaF---KVKT------------T~P~~Y~VrP--~~GiI~P~~s~~V~Itlq~ 73 (210)
....-..+|.|.++.+++| ++.- -.|.-|...+ +..-|.||++..+.+.+..
T Consensus 68 ~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 68 GVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 3444556666666655443 2221 1344454433 2445999999999998874
No 147
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=29.44 E-value=35 Score=25.03 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=15.0
Q ss_pred EEEEeecCCC--cEEEeCCCeeeC
Q 028377 39 AFKVKTTNPK--KYCVRPNTGIVL 60 (210)
Q Consensus 39 aFKVKTT~P~--~Y~VrP~~GiI~ 60 (210)
+||+|+.+-+ ||.+.|+.|+-.
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~ 25 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEE 25 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHH
Confidence 6899976555 566667777643
No 148
>PRK09039 hypothetical protein; Validated
Probab=29.37 E-value=74 Score=28.96 Aligned_cols=37 Identities=19% Similarity=0.101 Sum_probs=29.5
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 171 ~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.+.+..++++...|..|..|..+|+.|...|+.+|+.
T Consensus 126 ~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888888888888888764
No 149
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=29.33 E-value=92 Score=23.89 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 028377 186 KLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 186 ~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+|++....|.+||+-||-+++-
T Consensus 76 rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 76 RLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555444443
No 150
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.17 E-value=1.1e+02 Score=22.32 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+..-+...|..|......+.++|..|+++++
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344566888888888899999999998874
No 151
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=28.55 E-value=69 Score=26.79 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEe
Q 028377 36 NYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 36 ~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itl 71 (210)
++|+||+ |.+.-|.||+++++.+..
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~~Y 140 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDMVY 140 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeEEE
Confidence 6777777 888889999999998874
No 152
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.02 E-value=2.1e+02 Score=22.20 Aligned_cols=11 Identities=18% Similarity=0.598 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 028377 184 ISKLKDEKNNA 194 (210)
Q Consensus 184 i~~l~~E~~~~ 194 (210)
+.+|+.+|+.|
T Consensus 39 l~~l~~~r~~l 49 (120)
T PF12325_consen 39 LARLEAERDEL 49 (120)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 153
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=27.85 E-value=1.6e+02 Score=20.83 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 028377 179 EARALISKLK 188 (210)
Q Consensus 179 e~~~~i~~l~ 188 (210)
++...+.++.
T Consensus 21 ~~qeel~~~k 30 (69)
T PF08912_consen 21 KQQEELQKLK 30 (69)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 154
>smart00605 CW CW domain.
Probab=27.83 E-value=75 Score=22.88 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=15.0
Q ss_pred EEEEEEeC-CCCeEEEEEeecCCC
Q 028377 26 CSLQLSNK-TDNYVAFKVKTTNPK 48 (210)
Q Consensus 26 ~~l~L~N~-s~~~VaFKVKTT~P~ 48 (210)
..++-.+. +...||||+.++.+.
T Consensus 57 ~~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 57 LTVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEEEccCCCCcEEEEEEeCCCCC
Confidence 34444444 458899999876554
No 155
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=27.75 E-value=20 Score=31.01 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
|...+..+++..|..|..|-..|+++|++|+.|-.||
T Consensus 126 EQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 126 EQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667788888888888888888888888887776
No 156
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.32 E-value=91 Score=23.72 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
...+...+.+|..+.....++...|++|
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 89 LQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444
No 157
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.91 E-value=1.1e+02 Score=23.72 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+.+...+...+.+|.++...+.++...+++.+.++
T Consensus 100 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 100 DKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677777777766666666666554
No 158
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=26.67 E-value=93 Score=22.20 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
.+..+.|..|-++...|.++++.||+
T Consensus 59 ~~gi~lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 59 LEGIALILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 47778899999989998888888874
No 159
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.61 E-value=2.5e+02 Score=20.48 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=23.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+...+.+++...|.+|...|..|-++..+......
T Consensus 29 ~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~ 63 (89)
T PF13747_consen 29 ERDRKRDELEEEIQRLDADRSRLAQELDQAEARAN 63 (89)
T ss_pred HhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 33445567777788888888877777665554443
No 160
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=26.52 E-value=1.4e+02 Score=25.36 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028377 181 RALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
...|..+.+|...|.++|..|+.
T Consensus 131 h~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 131 HKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555444
No 161
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=26.51 E-value=1.6e+02 Score=21.82 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 180 ARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
....+..|....+.+..+|..|.+++..
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777788888777754
No 162
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.37 E-value=1.2e+02 Score=26.76 Aligned_cols=8 Identities=38% Similarity=0.347 Sum_probs=4.3
Q ss_pred HHHHHhhc
Q 028377 201 LRQDLVSD 208 (210)
Q Consensus 201 L~~el~~~ 208 (210)
|++|.++|
T Consensus 96 l~~EN~rL 103 (283)
T TIGR00219 96 LKQENVRL 103 (283)
T ss_pred HHHHHHHH
Confidence 55555554
No 163
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=26.28 E-value=1.4e+02 Score=25.26 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+.++...+...-.|+..|++.|++||.|..
T Consensus 43 m~evNrrlQ~hl~EIR~LKe~NqkLqedNq 72 (195)
T PF10226_consen 43 MKEVNRRLQQHLNEIRGLKEVNQKLQEDNQ 72 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667777777877777776543
No 164
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.81 E-value=1.3e+02 Score=25.03 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 179 EARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
++...|..|++|...|..+...|+.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~ 148 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKN 148 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 165
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=25.79 E-value=1.1e+02 Score=25.49 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+-...++.+.-..|.+....+...|..|+.+|.++
T Consensus 73 qqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~kl 107 (182)
T PF15035_consen 73 QQRSEELAQVNALLREQLEQARKANEALQEDLQKL 107 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455665666666666666666666666666553
No 166
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.61 E-value=1.1e+02 Score=29.43 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 179 EARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+++..+.+|..+-+.|++||++||+
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555544
No 167
>PRK10722 hypothetical protein; Provisional
Probab=25.61 E-value=1.3e+02 Score=26.34 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=21.3
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh
Q 028377 177 STEARALISKL----KDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 177 ~~e~~~~i~~l----~~E~~~~~~~~~~L~~el~~ 207 (210)
+++-..--.+| ..+.+.++||+..||.+|+.
T Consensus 160 LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~ 194 (247)
T PRK10722 160 LAEERQRYQKLQQSSDSELDALRQQQQRLQYQLEL 194 (247)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566 67777888888888888764
No 168
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=25.49 E-value=99 Score=30.22 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.+.-+...+..|++|...|..||.+|+.+|.++
T Consensus 156 e~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 156 EINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344455567778888888888888888877764
No 169
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=25.35 E-value=1.3e+02 Score=22.26 Aligned_cols=37 Identities=8% Similarity=0.212 Sum_probs=27.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
+++....+...|.+|++....+..+...|+.+|..|.
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556777888888888888888888888887653
No 170
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=25.33 E-value=3.1e+02 Score=23.40 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=37.7
Q ss_pred eeeEEEEE-EeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccC
Q 028377 23 QISCSLQL-SNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 23 ~~~~~l~L-~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 74 (210)
...+.++| .|.......|.-....++.|. .++.-.+.+|.+..+.|....+
T Consensus 60 v~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~-~~~~~~~~~G~~Y~L~V~~~~~ 111 (298)
T PF14054_consen 60 VSGATVTIYEDGQGNEYLFEESSNNDGVYY-SSNSFRGRPGRTYRLEVETPGG 111 (298)
T ss_pred cCCcEEEEEeCCCcceEeecccCCCcceEE-ecccccccCCCEEEEEEEECCC
Confidence 34589999 777777777776655557888 4444489999999999999533
No 171
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=25.31 E-value=2.1e+02 Score=24.65 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=28.8
Q ss_pred EEEEEEeCCCCeEEEE-EeecCC-CcEEEeCCCeeeCCCCeEEEEEE
Q 028377 26 CSLQLSNKTDNYVAFK-VKTTNP-KKYCVRPNTGIVLPRSTCDIIVT 70 (210)
Q Consensus 26 ~~l~L~N~s~~~VaFK-VKTT~P-~~Y~VrP~~GiI~P~~s~~V~It 70 (210)
..|+++|+|..++.|- |+.... +.+.+ ..+.|.|+++..+.+-
T Consensus 173 ~~L~v~Nptpy~itl~~l~~~~~g~~~~~--~~~mi~P~s~~~~~l~ 217 (246)
T PRK09926 173 ASLRVTNPTPYYVSFSSGDLEAGGKRYPV--DSKMIAPFSDESMKVK 217 (246)
T ss_pred EEEEEECCCceEEEEEeeeeecCCeeccc--CcceECCCCcceEecC
Confidence 4599999999999775 432222 22322 3478999998888753
No 172
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=25.27 E-value=1.3e+02 Score=22.62 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~ 202 (210)
.--+|+++.|.+|.+|+.++.=+-.+.|
T Consensus 31 sAA~EAMaMI~RLQ~EKAa~~mEA~Qy~ 58 (94)
T PF04576_consen 31 SAASEAMAMILRLQEEKAAVEMEARQYQ 58 (94)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3456899999999999998766555443
No 173
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=25.14 E-value=1.1e+02 Score=26.75 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=18.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+++..+.++...+..+.+|+..|+.++..|+-|+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ 165 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEY 165 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666666666655555444
No 174
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.86 E-value=1.7e+02 Score=21.35 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
..++.+.+..|+.++..+..+..-++.++.
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666555555543
No 175
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=24.83 E-value=3.5e+02 Score=25.18 Aligned_cols=59 Identities=10% Similarity=0.192 Sum_probs=38.3
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCc-----cCCCCCCCCCeEEEE
Q 028377 26 CSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQK-----EAPPDMQCKDKFLLQ 90 (210)
Q Consensus 26 ~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~-----e~p~d~~~kDKFlVq 90 (210)
..+.++|.+....-|-+-... .|--....|.||.+..+.+++.|+. ...+++ +.+|.|.
T Consensus 53 ~~f~V~N~~~~~~Efe~~~~~----~vv~e~EnIaPG~s~~l~~~L~pGtY~~~C~~~~~~--~g~l~Vt 116 (375)
T PRK10378 53 TQFIIQNHSQKALEWEILKGV----MVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNP--KGKLIVK 116 (375)
T ss_pred EEEEEEeCCCCcceEEeeccc----cccccccccCCCCceEEEEecCCceEEeecCcCCCC--CceEEEe
Confidence 667778887777777665211 3334567899999988888887763 111222 5677775
No 176
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=24.62 E-value=1.5e+02 Score=24.56 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=18.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
.+.+.++...-..|+++...+..+-..|++||.
T Consensus 87 ReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 87 REQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566666666666666655554
No 177
>PF11668 Gp_UL130: HCMV glycoprotein pUL130; InterPro: IPR021038 This entry represents UL130 from Human cytomegalovirus, a glycoprotein secreted from infected cells that is incorporated into the virion envelope as a Golgi-matured form. The protein promotes endothelial cell infection through a producer cell modification of the virion [].
Probab=24.51 E-value=1.9e+02 Score=23.57 Aligned_cols=43 Identities=26% Similarity=0.586 Sum_probs=29.4
Q ss_pred eeEeccCC-CeeeEEEEEEeC---CCCeEEEEEeec------CCCcEEEeCCC
Q 028377 14 LKFPFELK-KQISCSLQLSNK---TDNYVAFKVKTT------NPKKYCVRPNT 56 (210)
Q Consensus 14 L~F~~~~~-k~~~~~l~L~N~---s~~~VaFKVKTT------~P~~Y~VrP~~ 56 (210)
|.|....+ +-..|.|+|.-- ...+|+|++|-+ -+.-+|++||-
T Consensus 102 Lry~vkDG~~~~~C~m~v~TwA~~~~~~i~Fq~kiel~~A~~~~stiCthPnl 154 (156)
T PF11668_consen 102 LRYRVKDGTRWEMCIMRVQTWAHTKSNYIQFQVKIELTHAYRQPSTICTHPNL 154 (156)
T ss_pred EEEEeccCCceeeEEEEeeehhhhhcccEEEEEEEEEeeccCCccceeccccc
Confidence 56665443 456799988763 235699999843 45678999974
No 178
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=24.51 E-value=1.1e+02 Score=30.90 Aligned_cols=31 Identities=13% Similarity=0.337 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
..+.+...+..++.||++|+.|.+.|++||.
T Consensus 410 Rva~lEkKvqa~~kERDalr~e~kslk~ela 440 (961)
T KOG4673|consen 410 RVATLEKKVQALTKERDALRREQKSLKKELA 440 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4556777889999999999999999999875
No 179
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.41 E-value=1.7e+02 Score=20.09 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
...++...|.+...+...|.++.+.|.+.|..
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666665543
No 180
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=24.41 E-value=1.3e+02 Score=26.74 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 182 ALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+....+..|+.++.+||++|++.|.
T Consensus 83 ~~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 83 AELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3555667788899999999998875
No 181
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.37 E-value=1.2e+02 Score=22.28 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028377 179 EARALISKLKDEKNNAVQQ 197 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~ 197 (210)
.+...+.+|.+|...+..|
T Consensus 27 ka~~~~~kL~~en~qlk~E 45 (87)
T PF10883_consen 27 KAKKQNAKLQKENEQLKTE 45 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 182
>PF14645 Chibby: Chibby family
Probab=24.07 E-value=1.2e+02 Score=23.29 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 183 LISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
...+|.++..+|.+||+-||-+.+-|
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666667777777766665543
No 183
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.01 E-value=1.4e+02 Score=22.65 Aligned_cols=36 Identities=28% Similarity=0.224 Sum_probs=26.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
+.+...+...+.+|+++...+.++...++..+.+.+
T Consensus 93 ~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~ 128 (129)
T cd00584 93 DKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQ 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667777888888888888888888887776654
No 184
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=23.94 E-value=1.9e+02 Score=24.83 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=27.5
Q ss_pred EEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEE
Q 028377 27 SLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 27 ~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~I 69 (210)
.|++.|+|..+|.|---.-.-+. + ..++|.|+++..+.+
T Consensus 154 ~l~v~NpTPyyvtl~~l~~~~~~--~--~~~mi~P~s~~~~~~ 192 (233)
T PRK15246 154 TIRIVNPTSWYMSLTLTMDNKKS--I--GDIMVAPKTALDVPL 192 (233)
T ss_pred EEEEECCCCcEEEEEeEEECCcc--c--CcceECCCCccEEEc
Confidence 49999999999988632222222 2 246899999888864
No 185
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=23.90 E-value=2e+02 Score=18.22 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
-+.|.+..+.++.+|+-.+ +++||.+
T Consensus 12 IL~EvrkEl~K~K~EIIeA------~~~eL~r 37 (40)
T PF08776_consen 12 ILEEVRKELQKVKEEIIEA------IRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHhc
Confidence 4456666777776665544 5555544
No 186
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=23.69 E-value=1.2e+02 Score=20.25 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=10.8
Q ss_pred EEEEEEeCCCCeEEEEE
Q 028377 26 CSLQLSNKTDNYVAFKV 42 (210)
Q Consensus 26 ~~l~L~N~s~~~VaFKV 42 (210)
..-++...+...||||+
T Consensus 55 ~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 55 TVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEeecCCCeEEEEEC
Confidence 33334445568999996
No 187
>PRK02119 hypothetical protein; Provisional
Probab=23.65 E-value=2.3e+02 Score=19.92 Aligned_cols=31 Identities=10% Similarity=-0.067 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
...++...|.+...+...+.++.+.|.+.|.
T Consensus 24 tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 24 LLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666553
No 188
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=23.60 E-value=2.1e+02 Score=19.89 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=21.5
Q ss_pred EEEEEeCCCCeEE-----EEEeecCCCcE-EEeCCCeeeCCCCeEEEEEEec
Q 028377 27 SLQLSNKTDNYVA-----FKVKTTNPKKY-CVRPNTGIVLPRSTCDIIVTMQ 72 (210)
Q Consensus 27 ~l~L~N~s~~~Va-----FKVKTT~P~~Y-~VrP~~GiI~P~~s~~V~Itlq 72 (210)
+|+++|+..-.+- +.|.--.-..- ...+..+.++|+++..|.+.+.
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~ 52 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVS 52 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEE
Confidence 3667777663222 22222221122 3445556666777666655433
No 189
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=23.49 E-value=1.6e+02 Score=25.16 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=28.6
Q ss_pred EEEEEeCCCCeEEEE-EeecCCCcEEEeCCCeeeCCCCeEEEEE
Q 028377 27 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 27 ~l~L~N~s~~~VaFK-VKTT~P~~Y~VrP~~GiI~P~~s~~V~I 69 (210)
.|++.|+|..+|.|- ++.. -+. +. +.|.|.|+++..+.+
T Consensus 158 ~l~v~NptPyyitl~~l~~~-~~~--~~-~~~mI~P~s~~~~~~ 197 (226)
T PRK15295 158 VITVNNPTPYYMNFASVTLN-SHE--VK-SATFVPPKSSASFKL 197 (226)
T ss_pred EEEEECCCceEEEEEEEEEC-Ccc--cC-CCceECCCCccEEEc
Confidence 499999999999875 5543 222 22 358999999988875
No 190
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=23.36 E-value=2.1e+02 Score=24.68 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=28.1
Q ss_pred EEEEEeCCCCeEEEE-EeecCCCcEEEeCCCeeeCCCCeEEEEEE
Q 028377 27 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIVT 70 (210)
Q Consensus 27 ~l~L~N~s~~~VaFK-VKTT~P~~Y~VrP~~GiI~P~~s~~V~It 70 (210)
.|++.|+|..+|.|. ++- +-+. + ...+.|.|.++..+.+.
T Consensus 163 ~l~v~NpTPyyvtl~~l~v-~~~~--~-~~~~miaPfs~~~~~~~ 203 (234)
T PRK15192 163 GATVRNPTPYYVTLFLLRA-NERA--Q-DNAGVVAPFATRQTDWC 203 (234)
T ss_pred EEEEECCCCcEEEEEeEEE-cCcc--c-CCCceECCCCccEEecc
Confidence 399999999999885 332 2222 2 24578999998888763
No 191
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=23.30 E-value=2.2e+02 Score=18.54 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
.|+.+.+.+++++...-..+.+.|++=++.|+
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL 34 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNLL 34 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777888777653
No 192
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=23.27 E-value=1.3e+02 Score=25.85 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+....+...+.+-..||+.|++|.++|.-+.
T Consensus 33 eqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~ 63 (214)
T PF07795_consen 33 EQIAHLKDLLKKAYQERDEAREQLQKLLLEK 63 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455678889999999999999999988443
No 193
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=23.05 E-value=1e+02 Score=23.28 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=19.9
Q ss_pred eeEEEEEEeCCCCeEEEEEeecCCC
Q 028377 24 ISCSLQLSNKTDNYVAFKVKTTNPK 48 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKTT~P~ 48 (210)
..-.|++.+-...-+-||||.++|-
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~L 43 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPL 43 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChH
Confidence 4567788886668889999999875
No 194
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.01 E-value=1.6e+02 Score=25.35 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 179 EARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
|....+..|..||.+..++.+.+.+
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~ 60 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQ 60 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 195
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=23.01 E-value=1.2e+02 Score=25.53 Aligned_cols=6 Identities=17% Similarity=0.844 Sum_probs=0.0
Q ss_pred HHhhcc
Q 028377 105 AEMFNK 110 (210)
Q Consensus 105 ~~~f~k 110 (210)
|+||.+
T Consensus 19 PdFf~~ 24 (225)
T PF04340_consen 19 PDFFER 24 (225)
T ss_dssp ------
T ss_pred cHHHHh
Confidence 355543
No 196
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=22.72 E-value=2.7e+02 Score=27.34 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=29.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.....+....|..|++++..+..+++.+..||.+.
T Consensus 369 e~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~ 403 (557)
T PF01763_consen 369 EGQINNQFDTIEDLKEENQDLEKKLRELESELSRY 403 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888899999999999999999999999864
No 197
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=22.24 E-value=2.2e+02 Score=24.04 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=27.7
Q ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 169 ERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 169 ~~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
|+..+...+..+......|...+..|..+++.|++|-
T Consensus 164 EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq 200 (206)
T PF14988_consen 164 ENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQ 200 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777888888888888888888763
No 198
>KOG4094 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.98 E-value=96 Score=25.33 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=13.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+++.++..+...-.|...|.++...+|+|+
T Consensus 58 ~~SnlRp~v~~y~deEs~Ler~lRl~R~E~ 87 (178)
T KOG4094|consen 58 NLSNLRPIVLRYVDEESELERQLRLAREEL 87 (178)
T ss_pred hhhhhhHHHHHhCCcccHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 199
>PRK00295 hypothetical protein; Provisional
Probab=21.90 E-value=2.6e+02 Score=19.26 Aligned_cols=30 Identities=7% Similarity=-0.070 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
..++...|.+...+...+.++.+.|.+.|.
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666655543
No 200
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=21.88 E-value=2e+02 Score=19.17 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 178 TEARALISKLKDEKNNAVQQNNKL 201 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L 201 (210)
..+.+.|.+|..|-..|..+...+
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666665544444444433
No 201
>KOG3646 consensus Acetylcholine receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.82 E-value=96 Score=29.71 Aligned_cols=66 Identities=26% Similarity=0.329 Sum_probs=45.9
Q ss_pred eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCC--CeeeCCC---CeEEEEEEeccCccCCCCCCCCCeE
Q 028377 13 ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPN--TGIVLPR---STCDIIVTMQAQKEAPPDMQCKDKF 87 (210)
Q Consensus 13 eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~--~GiI~P~---~s~~V~Itlq~~~e~p~d~~~kDKF 87 (210)
+|+|++. +-=+-.+.|.|--++. .-+|-+..|.|.-+ ++-++|| .+|.|.||.-|+.+ ..|.=||
T Consensus 100 dvR~p~~--~iWkPDVLLYNSade~----FDsTy~tN~Vv~~tG~v~~vPPGIfk~sCkiDItwFPFD~----Q~C~mKF 169 (486)
T KOG3646|consen 100 DIRFPGG--NIWKPDVLLYNSADEQ----FDSTYKTNYVVYSTGSVLWVPPGIFKSSCKIDITWFPFDD----QVCYLKF 169 (486)
T ss_pred eeccCCc--cccCCceecccccccc----CCCcceeeEEEccCCeeeecCCceeeeeeEEEEEEecccc----cEEEEEe
Confidence 4666653 4445689999987755 45666667777754 5667886 79999999999742 2566666
Q ss_pred E
Q 028377 88 L 88 (210)
Q Consensus 88 l 88 (210)
-
T Consensus 170 G 170 (486)
T KOG3646|consen 170 G 170 (486)
T ss_pred e
Confidence 4
No 202
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=21.67 E-value=1.8e+02 Score=24.56 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 179 EARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
++......|..|+..+..|..+||..+..|
T Consensus 151 q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 151 QARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888999998888888888876654
No 203
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=21.63 E-value=1.9e+02 Score=20.87 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=21.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
....++...+..|........+++.+|+.|..-
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~ 55 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEEVKEENEKLESENEY 55 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666777777777888888887543
No 204
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=21.57 E-value=1.5e+02 Score=26.48 Aligned_cols=27 Identities=22% Similarity=0.104 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
..++++....|+.|++.+..++....+
T Consensus 41 ~~~lr~e~~~l~~~~~~~~~~~~~~d~ 67 (308)
T PF11382_consen 41 FDSLREENDELRAELDALQAQLNAADQ 67 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444433
No 205
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=21.51 E-value=69 Score=21.39 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhh
Q 028377 193 NAVQQNNKLRQDLVS 207 (210)
Q Consensus 193 ~~~~~~~~L~~el~~ 207 (210)
.+++++.+||+||.+
T Consensus 3 ~~~~~veqLr~el~~ 17 (57)
T cd00068 3 QLKKEVEQLRKELSR 17 (57)
T ss_pred HHHHHHHHHHHHHCC
Confidence 466777888887754
No 206
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.36 E-value=2.3e+02 Score=19.13 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 182 ALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+.+.+|+.++..+..+...++.-|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444433
No 207
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=21.29 E-value=1.7e+02 Score=25.14 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
...+..++..+..+|....++..+|++||...+
T Consensus 93 ~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~ 125 (237)
T cd07657 93 LDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLT 125 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888999999999999999999998654
No 208
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.25 E-value=2.7e+02 Score=22.54 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHh
Q 028377 193 NAVQQNNKLRQDLV 206 (210)
Q Consensus 193 ~~~~~~~~L~~el~ 206 (210)
.++.++.+|+.|++
T Consensus 77 ~lr~~~e~L~~eie 90 (177)
T PF07798_consen 77 ELRSENEKLQREIE 90 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 209
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=21.16 E-value=1.6e+02 Score=22.80 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028377 182 ALISKLKDEKNNAVQQNNKLR 202 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~ 202 (210)
.+|..|.+..+.|.+||.-|+
T Consensus 74 ~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 74 EQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 210
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=21.08 E-value=2.3e+02 Score=21.18 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.++...+..+..++-.+.+.|+.|=.|+..+
T Consensus 13 ~~l~~~L~~v~~~~l~l~~~n~el~~el~~l 43 (106)
T PF05837_consen 13 RSLQEKLSDVEKKRLRLKRRNQELAQELLEL 43 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666665555543
No 211
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=20.97 E-value=82 Score=21.64 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 180 ARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
=.+.+..|-+|+..|.+.|..|+-+|
T Consensus 19 H~~tL~~LH~EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 19 HAQTLKGLHAEIERLQKRNKDLTFKL 44 (60)
T ss_pred HHHHHHHHHHHHHHHHHhccccceee
Confidence 34567778888888888888877665
No 212
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.93 E-value=1.5e+02 Score=23.85 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 028377 176 KSTEARALISKLKDEKNNAVQQ 197 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~ 197 (210)
+++++...+.+|++|...+.++
T Consensus 67 kwaKl~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 67 KWAKLNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555444444
No 213
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=20.87 E-value=2.7e+02 Score=19.87 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 180 ARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+...|..|++|...+.-+-+.|+.++.
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~ 41 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYK 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555544443
No 214
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=20.77 E-value=54 Score=24.77 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=22.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+-+.-++.+...+..|..|...|.+++..|+.+|.
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~ 56 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLE 56 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444566677777777777777777777766554
No 215
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=20.72 E-value=1.4e+02 Score=27.46 Aligned_cols=70 Identities=27% Similarity=0.359 Sum_probs=40.7
Q ss_pred CCCCcc-eEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC-----CCcE----EEe------CCCe-eeCCC
Q 028377 1 MSTGEL-LSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN-----PKKY----CVR------PNTG-IVLPR 62 (210)
Q Consensus 1 m~~~~l-L~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~-----P~~Y----~Vr------P~~G-iI~P~ 62 (210)
||.+.| |.+.=+ ||.|-++ .++.+++++|+|++.| =|||... --.| ..+ -.-| -|.||
T Consensus 190 mS~~~lhLevsLDkEiYyHGE---~isvnV~V~NNsnKtV-KkIK~~V~Q~adi~Lfs~aqy~~~VA~~E~~eGc~v~Pg 265 (402)
T KOG3865|consen 190 MSDGPLHLEVSLDKEIYYHGE---PISVNVHVTNNSNKTV-KKIKISVRQVADICLFSTAQYKKPVAMEETDEGCPVAPG 265 (402)
T ss_pred cCCCceEEEEEecchheecCC---ceeEEEEEecCCccee-eeeEEEeEeeceEEEEecccccceeeeeecccCCccCCC
Confidence 455332 333333 6777765 6899999999988665 2444321 1111 111 2222 57888
Q ss_pred CeEEEEEEeccC
Q 028377 63 STCDIIVTMQAQ 74 (210)
Q Consensus 63 ~s~~V~Itlq~~ 74 (210)
++..=..++-|.
T Consensus 266 stl~Kvf~l~Pl 277 (402)
T KOG3865|consen 266 STLSKVFTLTPL 277 (402)
T ss_pred CeeeeeEEechh
Confidence 888877777664
No 216
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=20.56 E-value=2.2e+02 Score=24.21 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=27.3
Q ss_pred EEEEEeCCCCeEEEE-EeecCCCcEEEeCCCeeeCCCCeEEEEE
Q 028377 27 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 27 ~l~L~N~s~~~VaFK-VKTT~P~~Y~VrP~~GiI~P~~s~~V~I 69 (210)
.|++.|+|..++.|- ++-... . + ...|.|.|+++..+.+
T Consensus 161 ~l~v~Nptpy~vtl~~l~~~~~-~--~-~~~~mv~P~s~~~~~l 200 (227)
T PRK15299 161 TLTVKNPTPYYMNFATLSVGSQ-K--V-KAPRYVAPFGNAQYTL 200 (227)
T ss_pred EEEEECCCccEEEEEeEEECCc-c--c-CCCceECCCCccEEEc
Confidence 599999999998764 333322 2 2 2358899999988865
No 217
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.52 E-value=2.3e+02 Score=19.11 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=21.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
...+...+...|..++.|...+....++|.+=
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777777777777777777653
No 218
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.14 E-value=1.4e+02 Score=24.44 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 182 ALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
..|.+|++|......+...|+.+.
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 219
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.09 E-value=1.3e+02 Score=24.21 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhh
Q 028377 176 KSTEARALISKLKDEKN------------NAVQQNNKLRQDLVS 207 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~------------~~~~~~~~L~~el~~ 207 (210)
+..++.+++.+|.+|.+ .+.++..+|.+||+.
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~ 84 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEK 84 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777766 345555556666553
Done!