Query 028377
Match_columns 210
No_of_seqs 219 out of 730
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wic_A Hypothetical protein ri 100.0 8E-40 2.7E-44 263.1 14.1 135 3-142 15-152 (152)
2 2cri_A Vesicle-associated memb 100.0 2.5E-37 8.5E-42 247.0 19.2 125 4-132 12-137 (147)
3 1z9l_A Vesicle-associated memb 100.0 1.7E-36 5.9E-41 236.6 17.3 122 1-126 4-127 (128)
4 1msp_A MSP, major sperm protei 100.0 5.5E-34 1.9E-38 222.4 16.6 118 5-126 7-125 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 3E-29 1E-33 191.2 14.3 104 7-124 3-106 (109)
6 1m1s_A WR4; structural genomic 100.0 1.4E-28 4.8E-33 189.3 15.7 106 5-124 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.4 6.2E-07 2.1E-11 68.1 8.2 75 11-91 29-104 (122)
8 2e6j_A Hydin protein; PAPD, st 98.2 5.8E-06 2E-10 61.1 7.9 71 4-74 7-81 (112)
9 3qbt_B Inositol polyphosphate 98.1 2.1E-05 7.2E-10 61.5 10.6 70 4-73 24-100 (140)
10 3qis_A Inositol polyphosphate 97.6 0.00028 9.5E-09 63.1 10.4 71 4-74 27-104 (366)
11 2qsv_A Uncharacterized protein 96.7 0.0071 2.4E-07 49.9 8.7 69 6-75 2-71 (220)
12 2qsv_A Uncharacterized protein 96.3 0.02 6.9E-07 47.1 9.3 68 5-74 118-186 (220)
13 3q48_A Chaperone CUPB2; IG fol 93.1 1.8 6.1E-05 36.6 12.7 107 7-127 30-146 (257)
14 2co7_B SAFB chaperone, putativ 91.6 1.7 5.9E-05 35.8 10.5 84 7-96 14-102 (221)
15 2xg5_A PAPD, chaperone protein 91.2 2.8 9.7E-05 34.4 11.4 107 7-127 2-117 (218)
16 1klf_A FIMC chaperone, chapero 89.9 4 0.00014 33.2 11.1 84 7-96 2-92 (205)
17 4djm_A DRAB; chaperone, PILI; 89.8 2.7 9.2E-05 35.2 10.2 70 7-80 24-98 (239)
18 2r39_A FIXG-related protein; s 88.3 2.5 8.4E-05 31.1 8.0 51 24-74 33-84 (118)
19 1l4i_A SFAE protein; periplasm 88.0 5.4 0.00019 32.3 10.6 109 7-127 2-117 (206)
20 4ay0_A Chaperone protein CAF1M 87.5 11 0.00036 31.0 13.4 107 7-127 14-127 (218)
21 2akf_A Coronin-1A; coiled coil 87.5 0.39 1.3E-05 27.5 2.3 25 184-208 1-25 (32)
22 3gfu_C Chaperone protein FAEE; 85.0 15 0.00051 30.3 13.3 105 7-127 2-113 (224)
23 1yew_A Particulate methane mon 84.2 7.4 0.00025 34.7 10.1 66 7-74 250-337 (382)
24 2jee_A YIIU; FTSZ, septum, coi 82.8 1.5 5.1E-05 30.9 4.1 34 172-205 31-64 (81)
25 2oqq_A Transcription factor HY 79.9 2.7 9.3E-05 25.9 4.0 33 173-205 8-40 (42)
26 1a93_B MAX protein, coiled coi 79.7 4.3 0.00015 23.9 4.6 27 182-208 7-33 (34)
27 1nkp_B MAX protein, MYC proto- 79.4 3.2 0.00011 28.7 4.9 28 181-208 53-80 (83)
28 3rfr_A PMOB; membrane, oxidore 79.3 7 0.00024 35.3 8.2 65 7-74 284-369 (419)
29 1jnm_A Proto-oncogene C-JUN; B 78.8 3 0.0001 27.4 4.4 34 175-208 22-55 (62)
30 1am9_A Srebp-1A, protein (ster 77.9 3.9 0.00013 28.4 5.0 31 177-207 45-75 (82)
31 1nkp_B MAX protein, MYC proto- 77.8 4 0.00014 28.2 5.0 32 177-208 42-73 (83)
32 3m91_A Proteasome-associated A 77.6 3.2 0.00011 26.7 4.0 36 173-208 14-49 (51)
33 3zy7_A AP-1 complex subunit ga 77.3 4.6 0.00016 30.2 5.6 68 23-94 30-103 (122)
34 2wuj_A Septum site-determining 77.2 4.5 0.00016 26.3 4.8 31 178-208 23-53 (57)
35 1nlw_A MAD protein, MAX dimeri 77.0 4.2 0.00014 28.3 4.9 29 180-208 52-80 (80)
36 1t2k_D Cyclic-AMP-dependent tr 77.0 3.5 0.00012 27.0 4.3 32 177-208 24-55 (61)
37 1nlw_A MAD protein, MAX dimeri 76.7 4.3 0.00015 28.2 4.9 32 177-208 42-73 (80)
38 1dh3_A Transcription factor CR 76.4 3.7 0.00013 26.5 4.2 29 177-205 24-52 (55)
39 1gd2_E Transcription factor PA 76.3 3.4 0.00012 28.2 4.2 43 163-207 19-61 (70)
40 1hlo_A Protein (transcription 75.0 3.6 0.00012 28.3 4.1 28 177-204 52-79 (80)
41 3m48_A General control protein 73.5 3.3 0.00011 24.2 2.9 22 187-208 5-26 (33)
42 1gd2_E Transcription factor PA 72.8 4.2 0.00014 27.8 3.9 37 172-208 33-69 (70)
43 3c3g_A Alpha/beta peptide with 72.7 5.9 0.0002 23.1 3.8 22 187-208 5-26 (33)
44 1ci6_A Transcription factor AT 72.3 5.4 0.00018 26.4 4.3 34 175-208 23-56 (63)
45 2dgc_A Protein (GCN4); basic d 72.1 3.8 0.00013 27.3 3.5 32 175-206 30-61 (63)
46 1nkp_A C-MYC, MYC proto-oncoge 71.7 6.6 0.00023 27.7 4.9 27 182-208 59-85 (88)
47 2wt7_A Proto-oncogene protein 71.4 5.8 0.0002 26.2 4.3 33 176-208 24-56 (63)
48 3m9b_A Proteasome-associated A 71.4 2.1 7.1E-05 36.3 2.5 34 175-208 61-94 (251)
49 2oxj_A Hybrid alpha/beta pepti 71.2 6.5 0.00022 23.0 3.8 27 177-203 3-29 (34)
50 1uo4_A General control protein 70.4 6.3 0.00022 23.1 3.7 23 186-208 5-27 (34)
51 1fmh_A General control protein 69.8 7.8 0.00027 22.0 3.8 25 184-208 3-27 (33)
52 1hjb_A Ccaat/enhancer binding 69.8 5.9 0.0002 28.1 4.3 36 173-208 34-69 (87)
53 2jee_A YIIU; FTSZ, septum, coi 69.8 6 0.00021 27.8 4.2 34 172-205 10-43 (81)
54 1gyu_A Adapter-related protein 68.9 10 0.00035 29.0 5.8 68 23-94 48-121 (140)
55 1gu4_A CAAT/enhancer binding p 68.6 6.8 0.00023 27.3 4.3 36 173-208 34-69 (78)
56 1iu1_A Gamma1-adaptin; coated 68.3 13 0.00044 28.6 6.3 68 23-94 54-127 (146)
57 3idu_A Uncharacterized protein 67.7 18 0.00061 27.1 6.9 69 20-97 31-100 (127)
58 1dh3_A Transcription factor CR 66.7 6.1 0.00021 25.5 3.5 27 182-208 22-48 (55)
59 1t2k_D Cyclic-AMP-dependent tr 66.0 7.5 0.00026 25.3 3.9 35 172-206 26-60 (61)
60 1go4_E MAD1 (mitotic arrest de 65.6 11 0.00036 27.6 5.0 32 176-207 13-44 (100)
61 3c3f_A Alpha/beta peptide with 65.5 10 0.00035 22.2 3.8 26 178-203 4-29 (34)
62 1go4_E MAD1 (mitotic arrest de 64.5 9.5 0.00033 27.8 4.5 29 180-208 10-38 (100)
63 2z5i_A TM, general control pro 64.5 14 0.00047 23.6 4.8 34 176-209 13-46 (52)
64 1nkp_A C-MYC, MYC proto-oncoge 63.2 12 0.00043 26.2 4.9 32 177-208 47-78 (88)
65 3s9g_A Protein hexim1; cyclin 61.8 10 0.00035 27.6 4.2 25 182-206 65-89 (104)
66 2bni_A General control protein 61.7 12 0.00041 21.9 3.7 22 187-208 6-27 (34)
67 2dgc_A Protein (GCN4); basic d 60.9 13 0.00044 24.6 4.4 28 181-208 29-56 (63)
68 3hnw_A Uncharacterized protein 60.2 9.9 0.00034 29.1 4.2 31 176-206 104-134 (138)
69 2wt7_A Proto-oncogene protein 60.2 14 0.00046 24.3 4.4 33 173-205 28-60 (63)
70 2wuj_A Septum site-determining 59.9 8.3 0.00028 25.0 3.2 34 172-205 24-57 (57)
71 1kd8_A GABH AIV, GCN4 acid bas 59.4 25 0.00084 20.8 4.8 29 177-205 3-31 (36)
72 2w6b_A RHO guanine nucleotide 57.5 20 0.00069 23.2 4.6 26 180-205 8-33 (56)
73 1kd8_A GABH AIV, GCN4 acid bas 57.0 16 0.00054 21.7 3.7 24 185-208 4-27 (36)
74 3w03_C DNA repair protein XRCC 56.8 12 0.00043 30.1 4.4 32 177-208 147-178 (184)
75 2oxj_A Hybrid alpha/beta pepti 56.6 27 0.00093 20.4 4.9 25 184-208 3-27 (34)
76 2xzz_A Protein-glutamine gamma 55.5 54 0.0018 23.4 7.5 62 13-75 9-75 (102)
77 2yy0_A C-MYC-binding protein; 55.4 24 0.00081 22.6 4.8 30 177-206 21-50 (53)
78 2huh_A Putative DNA mismatch r 51.8 41 0.0014 26.1 6.5 64 25-96 29-93 (147)
79 1jnm_A Proto-oncogene C-JUN; B 51.7 23 0.00078 23.0 4.4 35 172-206 26-60 (62)
80 3kin_B Kinesin heavy chain; mo 51.7 23 0.00078 26.1 4.9 32 177-208 84-115 (117)
81 2wt7_B Transcription factor MA 51.0 27 0.00091 24.9 4.9 23 183-205 56-78 (90)
82 2zvf_A Alanyl-tRNA synthetase; 50.6 18 0.00062 27.7 4.4 35 173-207 23-57 (171)
83 3mud_A DNA repair protein XRCC 50.5 21 0.00073 28.5 4.8 34 176-209 136-169 (175)
84 2xdj_A Uncharacterized protein 50.5 28 0.00097 24.3 4.9 32 177-208 22-53 (83)
85 2l5g_B Putative uncharacterize 50.1 32 0.0011 21.1 4.4 31 178-208 5-35 (42)
86 2hy6_A General control protein 49.5 25 0.00086 20.5 3.7 26 178-203 4-29 (34)
87 2l5g_A GPS2 protein, G protein 49.5 31 0.0011 20.6 4.1 25 177-201 10-34 (38)
88 2e9g_A AP-1 complex subunit ga 48.1 9 0.00031 28.8 2.1 68 23-94 39-112 (131)
89 1uii_A Geminin; human, DNA rep 47.7 26 0.00089 24.6 4.3 25 179-203 50-74 (83)
90 4fm3_A Uncharacterized hypothe 47.0 30 0.001 25.0 4.7 40 167-206 56-95 (98)
91 3isy_A Bsupi, intracellular pr 46.7 50 0.0017 24.5 6.1 38 1-44 2-40 (120)
92 1p4u_A ADP-ribosylation factor 44.9 33 0.0011 26.4 5.0 65 26-94 57-131 (153)
93 1ci6_A Transcription factor AT 44.1 35 0.0012 22.3 4.4 34 172-205 27-60 (63)
94 3mtu_E Head morphogenesis prot 43.5 30 0.001 24.0 4.0 35 175-209 37-71 (77)
95 2wt7_B Transcription factor MA 43.5 42 0.0015 23.8 5.0 37 173-209 53-89 (90)
96 2w83_C C-JUN-amino-terminal ki 43.2 46 0.0016 23.0 4.9 30 178-207 33-62 (77)
97 2yy0_A C-MYC-binding protein; 43.0 37 0.0013 21.6 4.2 19 178-196 29-47 (53)
98 1kd8_B GABH BLL, GCN4 acid bas 42.7 51 0.0017 19.4 4.9 29 177-205 3-31 (36)
99 1dip_A Delta-sleep-inducing pe 42.2 44 0.0015 23.0 4.7 29 175-203 15-43 (78)
100 2w6a_A ARF GTPase-activating p 40.1 78 0.0027 20.8 6.3 33 174-206 26-58 (63)
101 1uii_A Geminin; human, DNA rep 40.0 53 0.0018 23.0 4.9 33 176-208 40-72 (83)
102 1wlq_A Geminin; coiled-coil; 2 39.4 33 0.0011 24.1 3.8 25 179-203 42-66 (83)
103 3hn9_A Lamin-B1; structural ge 38.8 58 0.002 24.1 5.4 41 26-67 25-71 (123)
104 2zqm_A Prefoldin beta subunit 38.3 34 0.0012 24.4 3.9 37 173-209 75-111 (117)
105 2aze_B Transcription factor E2 38.3 49 0.0017 24.0 4.7 34 175-208 6-39 (106)
106 3q8t_A Beclin-1; autophagy, AT 37.9 54 0.0018 23.3 4.9 31 178-208 21-51 (96)
107 2wq1_A General control protein 37.3 60 0.0021 18.8 4.9 26 178-203 3-28 (33)
108 3vta_A Cucumisin; subtilisin-l 36.2 1.6E+02 0.0054 27.4 9.1 50 24-73 539-591 (621)
109 1fxk_A Prefoldin; archaeal pro 36.1 44 0.0015 23.4 4.2 36 174-209 71-106 (107)
110 3e38_A Two-domain protein cont 35.8 1E+02 0.0035 26.7 7.3 64 26-96 270-333 (343)
111 1gu4_A CAAT/enhancer binding p 35.8 66 0.0023 22.1 4.9 25 183-207 37-61 (78)
112 2w6a_A ARF GTPase-activating p 35.7 53 0.0018 21.6 4.0 35 174-208 19-53 (63)
113 1a93_A Coiled coil, LZ, MYC pr 35.0 68 0.0023 18.7 4.6 25 184-208 9-33 (34)
114 3ra3_B P2F; coiled coil domain 34.6 31 0.0011 18.8 2.3 13 194-206 5-17 (28)
115 4h22_A Leucine-rich repeat fli 34.2 76 0.0026 23.1 5.1 30 174-203 8-37 (103)
116 3c3f_A Alpha/beta peptide with 34.2 70 0.0024 18.6 4.9 25 184-208 3-27 (34)
117 1deb_A APC protein, adenomatou 34.0 91 0.0031 19.8 5.1 21 177-197 5-25 (54)
118 1ifr_A Lamin A/C; immunoglobul 34.0 64 0.0022 23.9 4.9 45 26-72 19-69 (121)
119 2v4h_A NF-kappa-B essential mo 33.0 42 0.0014 24.8 3.6 23 186-208 87-109 (110)
120 3w03_C DNA repair protein XRCC 32.8 51 0.0017 26.4 4.4 33 175-207 152-184 (184)
121 3mq7_A Bone marrow stromal ant 32.0 55 0.0019 24.4 4.1 26 183-208 72-97 (121)
122 4hci_A Cupredoxin 1; structura 31.8 1.2E+02 0.0041 20.6 6.5 51 9-71 25-75 (100)
123 3mnm_A ADP-ribosylation factor 31.4 1.5E+02 0.0053 21.6 7.8 51 21-71 30-86 (123)
124 3nmd_A CGMP dependent protein 31.3 98 0.0034 21.1 5.0 28 181-208 39-66 (72)
125 2zxx_A Geminin; coiled-coil, c 31.1 54 0.0019 22.7 3.7 27 179-205 38-64 (79)
126 3viq_B Mating-type switching p 31.1 61 0.0021 22.8 4.0 27 179-205 5-31 (85)
127 3q4f_C DNA repair protein XRCC 31.0 56 0.0019 26.3 4.3 27 178-204 157-183 (186)
128 2v66_B Nuclear distribution pr 30.7 80 0.0027 23.2 4.9 28 178-205 31-58 (111)
129 1zxa_A CGMP-dependent protein 29.4 77 0.0026 21.2 4.2 26 182-207 25-50 (67)
130 2wvr_A Geminin; DNA replicatio 29.2 61 0.0021 26.5 4.3 26 179-204 119-144 (209)
131 1t6f_A Geminin; coiled-coil, c 29.2 85 0.0029 18.5 3.8 22 182-203 14-35 (37)
132 1c7s_A Beta-N-acetylhexosamini 29.1 1.1E+02 0.0038 30.1 6.9 50 23-72 39-110 (858)
133 4b4t_J 26S protease regulatory 29.0 50 0.0017 29.6 4.2 35 174-208 31-65 (405)
134 1wlq_A Geminin; coiled-coil; 2 28.7 1.1E+02 0.0038 21.4 5.0 32 177-208 33-64 (83)
135 3jt0_A Lamin-B1; structural ge 28.7 69 0.0024 24.5 4.4 42 26-67 38-84 (144)
136 1ic2_A Tropomyosin alpha chain 28.6 75 0.0026 21.6 4.2 34 174-207 26-59 (81)
137 1wm3_A Ubiquitin-like protein 28.5 49 0.0017 21.6 3.1 21 27-47 3-23 (72)
138 3s4r_A Vimentin; alpha-helix, 28.4 99 0.0034 21.7 4.9 31 177-207 58-88 (93)
139 3hnw_A Uncharacterized protein 28.3 66 0.0022 24.4 4.2 18 177-194 77-94 (138)
140 1jcd_A Major outer membrane li 27.9 90 0.0031 19.8 4.1 32 176-207 12-43 (52)
141 2g30_A AP-2 complex subunit be 27.9 64 0.0022 26.9 4.4 52 21-73 54-111 (258)
142 2iaa_C Azurin; quinoprotein, t 27.7 68 0.0023 23.7 4.1 63 6-71 11-98 (128)
143 2eqb_B RAB guanine nucleotide 27.2 1.2E+02 0.0041 21.8 5.1 19 190-208 41-59 (97)
144 1l8d_A DNA double-strand break 27.1 74 0.0025 22.5 4.2 34 175-208 71-104 (112)
145 2lll_A Lamin-B2; immunoglobuli 27.0 84 0.0029 23.9 4.6 45 26-72 34-84 (139)
146 3v86_A De novo design helix; c 26.9 80 0.0027 17.0 3.4 21 181-201 6-26 (27)
147 1qhq_A Protein (auracyanin); e 26.9 49 0.0017 24.2 3.2 20 53-72 94-113 (140)
148 2ccw_A Azurin II, AZN-2; elect 26.8 45 0.0016 24.7 3.0 64 6-72 12-100 (129)
149 3c3g_A Alpha/beta peptide with 26.5 99 0.0034 17.8 4.9 29 177-205 2-30 (33)
150 3iyn_Q Protein IX, PIX, hexon- 25.9 58 0.002 24.6 3.4 34 174-207 97-130 (140)
151 3htk_A Structural maintenance 25.6 1.1E+02 0.0037 19.2 4.4 33 175-207 26-58 (60)
152 1klf_A FIMC chaperone, chapero 25.0 1.1E+02 0.0039 24.3 5.3 39 27-69 139-177 (205)
153 1uix_A RHO-associated kinase; 24.5 1.2E+02 0.0042 20.5 4.5 11 177-187 20-30 (71)
154 3i6s_A Subtilisin-like proteas 24.5 3E+02 0.01 25.8 8.8 51 24-74 560-613 (649)
155 3ndz_E Endoglucanase D; cellot 24.4 2E+02 0.0067 20.6 6.5 52 21-72 14-86 (107)
156 2io0_B Small ubiquitin-related 24.2 69 0.0024 22.2 3.4 22 26-47 6-27 (91)
157 1yyc_A LEA protein, putative l 24.0 2.6E+02 0.0088 21.8 7.7 51 23-73 63-119 (174)
158 4ath_A MITF, microphthalmia-as 23.9 95 0.0032 21.7 4.0 27 177-203 34-60 (83)
159 3s9g_A Protein hexim1; cyclin 23.5 91 0.0031 22.6 3.9 22 179-200 69-90 (104)
160 3vmx_A Voltage-gated hydrogen 23.4 1.2E+02 0.0041 19.0 4.0 32 173-204 9-40 (48)
161 3v1a_A Computational design, M 23.2 78 0.0027 19.9 3.1 20 189-208 27-46 (48)
162 3trt_A Vimentin; cytoskeleton, 23.2 1E+02 0.0036 20.3 4.1 25 184-208 51-75 (77)
163 3q0x_A Centriole protein; cent 23.0 81 0.0028 26.1 4.1 36 172-207 175-210 (228)
164 1fxk_C Protein (prefoldin); ar 22.9 88 0.003 22.8 4.0 36 173-208 93-128 (133)
165 3q4f_C DNA repair protein XRCC 22.9 1.1E+02 0.0036 24.6 4.5 29 181-209 153-181 (186)
166 2ve7_A Kinetochore protein HEC 22.4 1E+02 0.0036 26.3 4.9 19 190-208 186-204 (315)
167 2wvr_A Geminin; DNA replicatio 22.4 1.2E+02 0.0042 24.7 4.9 32 177-208 110-141 (209)
168 1iby_A Nitrosocyanin; RED copp 22.3 2E+02 0.0067 19.8 7.4 51 9-71 35-85 (112)
169 3u1c_A Tropomyosin alpha-1 cha 22.3 1.3E+02 0.0045 21.3 4.6 34 174-207 29-62 (101)
170 2ve7_C Kinetochore protein NUF 22.2 48 0.0016 27.6 2.6 33 176-208 142-174 (250)
171 1hjb_A Ccaat/enhancer binding 22.2 1.1E+02 0.0036 21.5 4.0 35 172-206 40-74 (87)
172 3m9b_A Proteasome-associated A 21.9 83 0.0028 26.5 3.9 32 172-203 65-96 (251)
173 1ik9_A DNA repair protein XRCC 21.8 1.2E+02 0.0039 24.7 4.8 31 178-208 135-165 (213)
174 2qdq_A Talin-1; dimerisation d 21.6 1.6E+02 0.0055 18.6 4.5 27 178-204 11-37 (50)
175 1ufg_A Lamin A, nuclear lamin; 21.3 1.5E+02 0.0051 22.8 5.1 45 26-72 50-100 (151)
176 1zme_C Proline utilization tra 21.2 1.2E+02 0.004 19.2 3.9 24 183-206 45-68 (70)
177 2jn6_A Protein CGL2762, transp 21.2 13 0.00043 25.7 -1.1 22 187-208 64-85 (97)
178 2r2v_A GCN4 leucine zipper; co 21.0 1.3E+02 0.0046 17.4 4.9 26 178-203 4-29 (34)
179 3rrk_A V-type ATPase 116 kDa s 20.7 89 0.003 26.6 4.1 32 177-208 101-135 (357)
180 2kes_A Synphilin-1; synphillin 20.6 1.6E+02 0.0054 18.1 4.4 18 183-200 19-36 (48)
181 4ay0_A Chaperone protein CAF1M 20.5 1.2E+02 0.004 24.6 4.5 40 26-69 148-187 (218)
182 1bxv_A Plastocyanin; copper pr 20.5 1.4E+02 0.0048 19.4 4.4 54 6-69 13-66 (91)
183 3q48_A Chaperone CUPB2; IG fol 20.4 71 0.0024 26.6 3.3 43 25-69 172-216 (257)
184 3tnu_B Keratin, type II cytosk 20.3 1.2E+02 0.004 22.3 4.2 23 179-201 40-62 (129)
185 4dzn_A Coiled-coil peptide CC- 20.1 1.3E+02 0.0044 16.9 4.5 24 180-203 7-30 (33)
186 1nwp_A Azurin; electron transp 20.0 83 0.0029 23.2 3.3 64 6-72 12-100 (128)
No 1
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=8e-40 Score=263.07 Aligned_cols=135 Identities=32% Similarity=0.491 Sum_probs=124.9
Q ss_pred CCcceEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCCC
Q 028377 3 TGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (210)
Q Consensus 3 ~~~lL~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~ 81 (210)
.+++|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|||||+.|+|.||++++|.|+||++.+ .
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~ 90 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V 90 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence 4689999998 8999999999999999999999999999999999999999999999999999999999999753 2
Q ss_pred CCCCeEEEEEEecC--CCCCccchhHHhhcccCCCeeeEEEeEEEEeCCCCCCCCCCCCCCCC
Q 028377 82 QCKDKFLLQSVKTN--DGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEEG 142 (210)
Q Consensus 82 ~~kDKFlVqs~~~~--~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~p~~~~s~~~~~~~~~ 142 (210)
.|+|||+||++.++ .+++..|+. ++|++..+..++++||||+|+.|++|+|++.+|.++|
T Consensus 91 ~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~~ 152 (152)
T 1wic_A 91 SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG 152 (152)
T ss_dssp CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccCCCCC
Confidence 78999999999999 566777886 8999888888999999999999999999999998765
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=2.5e-37 Score=247.03 Aligned_cols=125 Identities=31% Similarity=0.593 Sum_probs=113.6
Q ss_pred CcceEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCCCC
Q 028377 4 GELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQ 82 (210)
Q Consensus 4 ~~lL~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~ 82 (210)
+++|.|+|. +|.|.+++++.++|.|+|+|+++++||||||||+|++|||||++|+|.||++++|.|+||++. .+++++
T Consensus 12 ~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~-~~p~~~ 90 (147)
T 2cri_A 12 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFD-YDPNEK 90 (147)
T ss_dssp CCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCC-CCTTCC
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCc-CCcccc
Confidence 579999997 999999999999999999999999999999999999999999999999999999999999985 345678
Q ss_pred CCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeCCCCCC
Q 028377 83 CKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPP 132 (210)
Q Consensus 83 ~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~p~~~~ 132 (210)
|+|||+||++.++++.+ |+ .++|++..+..++++||||+|+.|++.+
T Consensus 91 ~kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~ 137 (147)
T 2cri_A 91 SKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNEND 137 (147)
T ss_dssp SCCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCSS
T ss_pred CCCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCCc
Confidence 99999999999998653 56 4899988888899999999999877543
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=1.7e-36 Score=236.60 Aligned_cols=122 Identities=31% Similarity=0.603 Sum_probs=110.9
Q ss_pred CC-CCcceEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCccCC
Q 028377 1 MS-TGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAP 78 (210)
Q Consensus 1 m~-~~~lL~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p 78 (210)
|+ .+++|.|+|. +|.|.+++++.+++.|+|+|+++++||||||||+|++|+|||++|+|.||++++|.|+|+++.. +
T Consensus 4 m~~~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~-~ 82 (128)
T 1z9l_A 4 MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDY-D 82 (128)
T ss_dssp CCSCCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCC-C
T ss_pred CCCCCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcC-C
Confidence 44 4579999996 9999999999999999999999999999999999999999999999999999999999999854 4
Q ss_pred CCCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEe
Q 028377 79 PDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (210)
Q Consensus 79 ~d~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~ 126 (210)
++++|+|||+||++.++++.+ |+ .++|++..+..++++||||+|.
T Consensus 83 p~~~~~dkF~V~s~~~~~~~~--~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 83 PNEKSKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp TTCCCCCEEEEEEEECCTTCS--CH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred cccccCCEEEEEEEECCCCcc--hH-HHHhhcCCCCceEEEEEEEEEe
Confidence 556899999999999998653 56 4899988888999999999996
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=100.00 E-value=5.5e-34 Score=222.38 Aligned_cols=118 Identities=20% Similarity=0.371 Sum_probs=107.1
Q ss_pred cceEEeCC-eeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCCCCC
Q 028377 5 ELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQC 83 (210)
Q Consensus 5 ~lL~i~P~-eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~ 83 (210)
..|.|+|. +|.|++|+++.++|.|+|+|+|+++||||||||+|++|||||++|+|.||+++.|.|+||++.+.|++ ..
T Consensus 7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~-~~ 85 (126)
T 1msp_A 7 GDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATED-LN 85 (126)
T ss_dssp CCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSC-CS
T ss_pred CeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCc-cC
Confidence 67999997 89999999999999999999999999999999999999999999999999999999999999776655 35
Q ss_pred CCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEe
Q 028377 84 KDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (210)
Q Consensus 84 kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~ 126 (210)
+|||+|||+.++++.+ +|+..+||.+. ..+..++|+|.|.
T Consensus 86 kDKf~Vq~~~~p~~~~-~~~~~~wf~~d--~~~~~k~L~V~Yn 125 (126)
T 1msp_A 86 NDRITIEWTNTPDGAA-KQFRREWFQGD--GMVRRKNLPIEYN 125 (126)
T ss_dssp SCEEEEEEEECCTTCC-SSCCTHHHHSS--SCCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcc-hhhhHHhhcCC--CceEEEEEEEEec
Confidence 9999999999998864 67887888553 3588999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=3e-29 Score=191.23 Aligned_cols=104 Identities=22% Similarity=0.349 Sum_probs=89.7
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCCCCCCCe
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDK 86 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~kDK 86 (210)
|.|+|.+|.|.++. .+|.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|++|++ + .++||
T Consensus 3 L~i~P~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 79999999999873 479999999999999999999999999999999999999999999999985 2 47999
Q ss_pred EEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEE
Q 028377 87 FLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVI 124 (210)
Q Consensus 87 FlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~ 124 (210)
|+||++.++.+. .|. .++|++... ..+.+|++.
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998764 255 489988654 455666654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=1.4e-28 Score=189.30 Aligned_cols=106 Identities=24% Similarity=0.393 Sum_probs=92.5
Q ss_pred cceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCCCCCC
Q 028377 5 ELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCK 84 (210)
Q Consensus 5 ~lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~k 84 (210)
.++.++|.+|.|+++ ..+|.|+|+|+|+.+||||||||+|++|||||++|+|+||++++|.|++|++ + .++
T Consensus 9 ~~~~~~p~~l~F~~~---gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPAT---GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTT---CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecC---CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 679999999999976 4689999999999999999999999999999999999999999999999996 2 479
Q ss_pred CeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEE
Q 028377 85 DKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVI 124 (210)
Q Consensus 85 DKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~ 124 (210)
|||+||++.++.+.. |. .++|++..+ .++.+|++.
T Consensus 80 DKflVq~~~~~~d~~--d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEET--DP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTCC--CT-THHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCCC--CH-HHHHhcCCC--CceEEEEEE
Confidence 999999999987532 44 489988655 577777764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=6.2e-07 Score=68.10 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=60.6
Q ss_pred CCeeeEec-cCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCCCCCCCeEEE
Q 028377 11 PLELKFPF-ELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLL 89 (210)
Q Consensus 11 P~eL~F~~-~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~kDKFlV 89 (210)
|..|.|.. +.+......+.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|++.|... . .....+.|
T Consensus 29 p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~--g--~~~~~l~v 102 (122)
T 2ys4_A 29 PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSV--G--DHSGRLIV 102 (122)
T ss_dssp CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSS--B--CCCCBCEE
T ss_pred CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCC--c--cEEEEEEE
Confidence 66788866 456778899999999999999999974 47999999999999999999999999631 1 24455555
Q ss_pred EE
Q 028377 90 QS 91 (210)
Q Consensus 90 qs 91 (210)
..
T Consensus 103 ~~ 104 (122)
T 2ys4_A 103 CY 104 (122)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=5.8e-06 Score=61.10 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=60.5
Q ss_pred CcceEEeCCeeeEec-cCCCeeeEEEEEEeCCCCeEEEEEeecCC---CcEEEeCCCeeeCCCCeEEEEEEeccC
Q 028377 4 GELLSIEPLELKFPF-ELKKQISCSLQLSNKTDNYVAFKVKTTNP---KKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 4 ~~lL~i~P~eL~F~~-~~~k~~~~~l~L~N~s~~~VaFKVKTT~P---~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 74 (210)
+..+.+++..|.|-. ..+....+.++|+|+++-++.|++..... ..|.+.|..|.|.||++..|.|++.+.
T Consensus 7 ~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 7 GPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 467889998888876 35677889999999999999999964221 469999999999999999999999984
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=98.14 E-value=2.1e-05 Score=61.46 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=60.3
Q ss_pred CcceEEeCCeeeEec-cCCCeeeEEEEEEeCCCCeEEEEEeec------CCCcEEEeCCCeeeCCCCeEEEEEEecc
Q 028377 4 GELLSIEPLELKFPF-ELKKQISCSLQLSNKTDNYVAFKVKTT------NPKKYCVRPNTGIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 4 ~~lL~i~P~eL~F~~-~~~k~~~~~l~L~N~s~~~VaFKVKTT------~P~~Y~VrP~~GiI~P~~s~~V~Itlq~ 73 (210)
..-+.+++.+|.|-- .++...++.|+|+|++.-+..|++.-. .+.-+.|.|..|.|.||+++.|.|++.-
T Consensus 24 ~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 24 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp SCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 356888889999986 467788999999999999999999853 3456899999999999999999999874
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.64 E-value=0.00028 Score=63.10 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=59.7
Q ss_pred CcceEEeCCeeeEec-cCCCeeeEEEEEEeCCCCeEEEEEeecCC------CcEEEeCCCeeeCCCCeEEEEEEeccC
Q 028377 4 GELLSIEPLELKFPF-ELKKQISCSLQLSNKTDNYVAFKVKTTNP------KKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 4 ~~lL~i~P~eL~F~~-~~~k~~~~~l~L~N~s~~~VaFKVKTT~P------~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 74 (210)
..-+.|++.+|.|-- .+....+..|+|+|++.-+..|++..... .-+.|.|..|.|.||+++.|.|++.-.
T Consensus 27 ~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 27 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp -CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred CCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 356889999999965 57888999999999999999999986422 226799999999999999999998754
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.69 E-value=0.0071 Score=49.94 Aligned_cols=69 Identities=13% Similarity=0.203 Sum_probs=58.8
Q ss_pred ceEEeCCeeeEecc-CCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCc
Q 028377 6 LLSIEPLELKFPFE-LKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (210)
Q Consensus 6 lL~i~P~eL~F~~~-~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 75 (210)
-|+++|..+.|.-- -+......++++|.++.++-++.-.. |..+..++..+.|.||++..|.|++.+..
T Consensus 2 ~i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp CEEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred ceEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 38899999999863 35566789999999999999987644 88888899999999999999999998753
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.33 E-value=0.02 Score=47.15 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=56.7
Q ss_pred cceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEE-EEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccC
Q 028377 5 ELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAF-KVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 5 ~lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaF-KVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 74 (210)
..+.++ ..+.|-.-.+....+.++|+|.++.++.+ +|+|++ +...+.++.+.|.||++..|.|++.+.
T Consensus 118 ~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 118 GVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp CCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred CEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecC
Confidence 346777 77777632267788999999999999987 888765 799999999999999999999999975
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=93.13 E-value=1.8 Score=36.62 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=67.9
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC------C----CcEEEeCCCeeeCCCCeEEEEEEeccCcc
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN------P----KKYCVRPNTGIVLPRSTCDIIVTMQAQKE 76 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~------P----~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e 76 (210)
|.|.|..+.|+.. .....|+|+|.++.++.-.+-..+ | .-|.|-|+.-.|+||+...|.|...+. .
T Consensus 30 v~i~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~-~ 105 (257)
T 3q48_A 30 LIAQGTRVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-P 105 (257)
T ss_dssp -CCSCSEEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-C
T ss_pred EEEcceEEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-C
Confidence 6677778888864 335899999999887765544322 1 249999999999999999999987764 3
Q ss_pred CCCCCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeC
Q 028377 77 APPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (210)
Q Consensus 77 ~p~d~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~ 127 (210)
+|.|.. --|-+..-.+|+.... + ...=......+|++-|.+
T Consensus 106 LP~DrE--Slf~lnv~eIPp~~~~-~-------~n~Lqiair~rIKLFyRP 146 (257)
T 3q48_A 106 LPTDRE--SLFWLNILEVPPRDED-E-------NNALQFSFRSRFKLFFRP 146 (257)
T ss_dssp CCSSSC--EEEEEEEEEECCC-----------------CCEEEEEEEEEEC
T ss_pred CCCCce--eEEEEEeeecCCCCCC-C-------CceEEEEEEEEEEEEEec
Confidence 566533 3344444445542110 0 000122457788888873
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=91.56 E-value=1.7 Score=35.82 Aligned_cols=84 Identities=10% Similarity=0.128 Sum_probs=59.1
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecC-----CCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN-----PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~-----P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~ 81 (210)
|.|.+..+.|+.. .....|+|+|.++.++.-.+..-. ..-|.|-|+.-.|+||+...|.|...+. .+|.|.
T Consensus 14 v~i~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~Dr 89 (221)
T 2co7_B 14 VKLGATRVIYHAG---TAGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 89 (221)
T ss_dssp CEESCSEEEEETT---SSCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCSSS
T ss_pred EEEcceEEEEcCC---CCEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCCCc
Confidence 6778888999864 246799999999887765554321 1259999999999999999999998763 466653
Q ss_pred CCCCeEEEEEEecCC
Q 028377 82 QCKDKFLLQSVKTND 96 (210)
Q Consensus 82 ~~kDKFlVqs~~~~~ 96 (210)
. .-|-+-.-.+|+
T Consensus 90 E--slf~lnv~eIPp 102 (221)
T 2co7_B 90 E--TLQWVCIKAVPP 102 (221)
T ss_dssp C--EEEEEEEEEECC
T ss_pred e--EEEEEEeecCCC
Confidence 3 234443344443
No 15
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=91.21 E-value=2.8 Score=34.41 Aligned_cols=107 Identities=14% Similarity=0.193 Sum_probs=69.5
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCC-eEEEEEeecC-------CCcEEEeCCCeeeCCCCeEEEEEEeccC-ccC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN-YVAFKVKTTN-------PKKYCVRPNTGIVLPRSTCDIIVTMQAQ-KEA 77 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~-~VaFKVKTT~-------P~~Y~VrP~~GiI~P~~s~~V~Itlq~~-~e~ 77 (210)
|.|++..+.|+.. .....|+|+|.++. ++.-.+-... ..-|.|-|+.--|+||+...|.|...+. ..+
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGS---EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETT---SSEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCC---CCEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 5677888888864 34679999999987 7655554322 2349999999999999999999998762 246
Q ss_pred CCCCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeC
Q 028377 78 PPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (210)
Q Consensus 78 p~d~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~ 127 (210)
|.|.. .-|-+-.-.+|+... + .. .=......+|++-|.+
T Consensus 79 P~DrE--Slf~lnv~eIPp~~~--~--~n-----~lqia~r~rIKlFyRP 117 (218)
T 2xg5_A 79 PQDRE--SLFYFNLREIPPRSE--K--AN-----VLQIALQTKIKLFYRP 117 (218)
T ss_dssp CSSSC--EEEEEEEEEECCCCC--C--TT-----EEEEEEEEEEEEEEEC
T ss_pred CCCce--EEEEEEeecCCCCCC--C--Cc-----eEEEEehheeeEEEcC
Confidence 76633 334444444443211 0 00 0012456788888873
No 16
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=89.87 E-value=4 Score=33.19 Aligned_cols=84 Identities=12% Similarity=0.200 Sum_probs=58.6
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCC-eEEEEEeec-----CCCcEEEeCCCeeeCCCCeEEEEEEe-ccCccCCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN-YVAFKVKTT-----NPKKYCVRPNTGIVLPRSTCDIIVTM-QAQKEAPP 79 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~-~VaFKVKTT-----~P~~Y~VrP~~GiI~P~~s~~V~Itl-q~~~e~p~ 79 (210)
|.|++..+.|+.. .....|+|+|.++. ++.-.+-.. ...-|.|-|+.--|+||+...|.|.. .+. .+|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~-~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAG---QKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNN-QLPQ 77 (205)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSCS-CSCS
T ss_pred eEecceEEEEeCC---CcEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCCC-CCCC
Confidence 5677888888864 34679999999887 765554332 12359999999999999999999998 653 4666
Q ss_pred CCCCCCeEEEEEEecCC
Q 028377 80 DMQCKDKFLLQSVKTND 96 (210)
Q Consensus 80 d~~~kDKFlVqs~~~~~ 96 (210)
|.. .-|-+-.-.+|+
T Consensus 78 DrE--slf~lnv~eIPp 92 (205)
T 1klf_A 78 DRE--SLFWMNVKAIPS 92 (205)
T ss_dssp SSC--EEEEEEEEEECC
T ss_pred Cce--EEEEEEeEecCC
Confidence 533 234444444443
No 17
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=89.82 E-value=2.7 Score=35.16 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=52.3
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec-----CCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT-----NPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPD 80 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT-----~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d 80 (210)
|.|.+..+.|+.. .....|+|+|.++.++.-.+-.. ...-|.|-|+.--|+||+...|.|..... .+|.|
T Consensus 24 v~l~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~D 98 (239)
T 4djm_A 24 LHLGATRVVYNPA---SSGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPD 98 (239)
T ss_dssp CEESCSEEEECTT---SSCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSS
T ss_pred EEEcceEEEEeCC---CCEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6688888888864 24579999999887765443321 12249999999999999999999987754 35655
No 18
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=88.27 E-value=2.5 Score=31.11 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=39.3
Q ss_pred eeEEEEEEeCCCCeEEEEEeecCCCcEEEe-CCCeeeCCCCeEEEEEEeccC
Q 028377 24 ISCSLQLSNKTDNYVAFKVKTTNPKKYCVR-PNTGIVLPRSTCDIIVTMQAQ 74 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKTT~P~~Y~Vr-P~~GiI~P~~s~~V~Itlq~~ 74 (210)
-...|+|.|++.+...|.++......+.+. |..=.|.||+...+.|.+...
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEEC
Confidence 458999999999999999998775446554 554578899988888877653
No 19
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=88.01 E-value=5.4 Score=32.34 Aligned_cols=109 Identities=10% Similarity=0.171 Sum_probs=68.2
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCC-CeEEEEEeecC-----CCcEEEeCCCeeeCCCCeEEEEEE-eccCccCCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTD-NYVAFKVKTTN-----PKKYCVRPNTGIVLPRSTCDIIVT-MQAQKEAPP 79 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~-~~VaFKVKTT~-----P~~Y~VrP~~GiI~P~~s~~V~It-lq~~~e~p~ 79 (210)
|.|++..+.|+.. .....|+|+|.++ .++.-.+-... ..-|.|-|+.--|+||+...|.|. ... ..+|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEG---QKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCC---CcEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5677888888864 3467999999986 77655553321 235999999999999999999998 654 24676
Q ss_pred CCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeC
Q 028377 80 DMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (210)
Q Consensus 80 d~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~ 127 (210)
|...--.|-|..++..+... .+ .. .=......+|++-|.+
T Consensus 78 DrEslf~lnv~eIPp~~~~~-~~--~n-----~lqia~r~riKlFyRP 117 (206)
T 1l4i_A 78 DRESLFWVNVKAIPAMDKAK-TG--EN-----YLQFAIVSRIKLLYRP 117 (206)
T ss_dssp SSCEEEEEEEEEEECCC----------------CCCEEEEEEEEEEEC
T ss_pred CceEEEEEEeecCCCCcccc-cC--Cc-----eEEEEhhheeeEEEec
Confidence 63333344444444322110 00 00 0123457788888873
No 20
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=87.54 E-value=11 Score=30.97 Aligned_cols=107 Identities=9% Similarity=0.113 Sum_probs=65.0
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeec-------CCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT-------NPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT-------~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~ 79 (210)
+.|+-..+.|+.. .....|+|+|.++.++.-..... ...-|.|-|+.--|+||+...|.|...+. .+|.
T Consensus 14 v~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP~ 89 (218)
T 4ay0_A 14 VTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFPR 89 (218)
T ss_dssp EEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred EEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCCc
Confidence 5666677888753 34678999999988765554331 11249999999999999999999988764 3666
Q ss_pred CCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeC
Q 028377 80 DMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (210)
Q Consensus 80 d~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~ 127 (210)
|.. .-|-+-.-.+|+..... ... =......+|++-|.+
T Consensus 90 DRE--Slf~lnv~eIPp~~~~~------~n~--lqia~r~rIKlFyRP 127 (218)
T 4ay0_A 90 DKE--SLKWLCVKGIPPKDEDI------WVD--VQFAINNCIKLLVRP 127 (218)
T ss_dssp SSC--EEEEEEEEEECC----------------------CEEEEEEEC
T ss_pred CcE--EEEEEEEEecCCCCccc------cce--eEEEEEEEEEEEEcC
Confidence 522 23555555555421100 000 012345678888873
No 21
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=87.49 E-value=0.39 Score=27.48 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 184 ISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 184 i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
|++|+||...|..-.++||+-++||
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888899888876
No 22
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=85.05 E-value=15 Score=30.31 Aligned_cols=105 Identities=15% Similarity=0.221 Sum_probs=63.9
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCC-eEEEE--EeecC----CCcEEEeCCCeeeCCCCeEEEEEEeccCccCCC
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN-YVAFK--VKTTN----PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~-~VaFK--VKTT~----P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~ 79 (210)
+.++...+.|+.. .....|+|+|.++. ++.-. |.... ..-|.|-|+.--|+||+...|.|...+. .+|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 4566677888864 34589999999875 43222 22211 1249999999999999999999987754 3565
Q ss_pred CCCCCCeEEEEEEecCCCCCccchhHHhhcccCCCeeeEEEeEEEEeC
Q 028377 80 DMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (210)
Q Consensus 80 d~~~kDKFlVqs~~~~~~~~~~di~~~~f~k~~~~~v~e~KLrv~~~~ 127 (210)
|.. .-|-+-.-.+|+.... ..=......+|++-|.+
T Consensus 78 DRE--Slf~lnv~eIPp~~~~----------n~Lqiair~rIKLFyRP 113 (224)
T 3gfu_C 78 DKE--SVYWLNLQDIPPALEG----------SGIAVALRTKLKLFYRP 113 (224)
T ss_dssp SSC--EEEEEEEEEECCCCSS----------SBCCEEEEEEEEEEEEC
T ss_pred Cce--EEEEEEeecCCCCCCC----------CeEEEEEEEEeeEEEcc
Confidence 533 3343333344432110 00123456777777773
No 23
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=84.22 E-value=7.4 Score=34.72 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=47.6
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEE----------------------EeCCCeeeCCCCe
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYC----------------------VRPNTGIVLPRST 64 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~----------------------VrP~~GiI~P~~s 64 (210)
+.++-..-.|.- .++...-.|+++|+++.+|-..==+|+.-+|. |.|+ .-|.||++
T Consensus 250 V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~pI~PGET 327 (382)
T 1yew_A 250 VSVKVEDATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SPLAPGET 327 (382)
T ss_dssp EEEEEEEEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SCBCTTCE
T ss_pred eEEEeeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CCcCCCce
Confidence 344444445554 47888999999999999998876666665553 3333 23899999
Q ss_pred EEEEEEeccC
Q 028377 65 CDIIVTMQAQ 74 (210)
Q Consensus 65 ~~V~Itlq~~ 74 (210)
.+|.|+.|.-
T Consensus 328 r~~~v~a~da 337 (382)
T 1yew_A 328 RTVDVTASDA 337 (382)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEEeehH
Confidence 9999999863
No 24
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.76 E-value=1.5 Score=30.95 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=16.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+++.+...+.+....+..+|..+.++|++|++|.
T Consensus 31 ELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 31 ELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444444444444444444555666666654
No 25
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=79.87 E-value=2.7 Score=25.89 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=24.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+..+..++......|++-.+.|..||+.|||-|
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 344455666677778887888888999999865
No 26
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=79.67 E-value=4.3 Score=23.95 Aligned_cols=27 Identities=15% Similarity=0.104 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 182 ALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
........+.+.+..||..|++++-+|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 456677888999999999999998664
No 27
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=79.35 E-value=3.2 Score=28.73 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 181 RALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
...+..|..|.+.|.++|..|+++|..|
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444466777777777777776654
No 28
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=79.33 E-value=7 Score=35.25 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=47.8
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEE--------------------E-eCCCeeeCCCCeE
Q 028377 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYC--------------------V-RPNTGIVLPRSTC 65 (210)
Q Consensus 7 L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~--------------------V-rP~~GiI~P~~s~ 65 (210)
+.++-..-.|.- .++...-.|+++|+++.+|-+.==+|+.-+|. + .|+ -|.||++.
T Consensus 284 V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGETr 360 (419)
T 3rfr_A 284 VTTELNGGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGESK 360 (419)
T ss_dssp CEEEEEEEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCEE
T ss_pred eEEEEeceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcce
Confidence 444444455664 47888999999999999998876666655554 1 233 59999999
Q ss_pred EEEEEeccC
Q 028377 66 DIIVTMQAQ 74 (210)
Q Consensus 66 ~V~Itlq~~ 74 (210)
+|.|++|.-
T Consensus 361 t~~V~a~da 369 (419)
T 3rfr_A 361 EIVVKIQDA 369 (419)
T ss_dssp EEEEEEECH
T ss_pred EEEEEeehH
Confidence 999999863
No 29
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=78.76 E-value=3 Score=27.45 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=26.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
....++...+..|+.+...|..+...|+.|+..|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888888888888888887665
No 30
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=77.91 E-value=3.9 Score=28.43 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+.++..+|..|..+...|.+++..|++++..
T Consensus 45 L~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 45 LRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5578899999999999999999999988754
No 31
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=77.78 E-value=4 Score=28.25 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+..+..+|..|.++...+.++...|+++...|
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999988765
No 32
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=77.57 E-value=3.2 Score=26.65 Aligned_cols=36 Identities=25% Similarity=0.128 Sum_probs=28.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
++.....+.+.=.+|.+-...+++|..+|++||++|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666677788999999999999999999886
No 33
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=77.35 E-value=4.6 Score=30.16 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=44.5
Q ss_pred eeeEEEEEEeCCCCeE-EEEEeecCCCcEEEe--CCCe-eeCC--CCeEEEEEEeccCccCCCCCCCCCeEEEEEEec
Q 028377 23 QISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-IVLP--RSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKT 94 (210)
Q Consensus 23 ~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~Vr--P~~G-iI~P--~~s~~V~Itlq~~~e~p~d~~~kDKFlVqs~~~ 94 (210)
...-.++.+|.+..+| -|.+..-.|+-|.++ |.+| .|.| +..++=.+.+...... ..+=|+.|.+..-
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~~~----~lklR~klsY~~~ 103 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQ----QLRMRIKLTFNWN 103 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTTCC----CCCEEEEEEEEET
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCCCC----CEEEEEEEEEEEC
Confidence 3567788899987666 788888899977766 7776 6888 6655555544432111 3455666666543
No 34
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=77.18 E-value=4.5 Score=26.27 Aligned_cols=31 Identities=6% Similarity=0.249 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.|.-+.+..+.++...+.++|..|++++.++
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777777654
No 35
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=77.02 E-value=4.2 Score=28.28 Aligned_cols=29 Identities=10% Similarity=0.064 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 180 ARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+.....+|..|...|..++..|+++|..|
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33344455555566666666666666543
No 36
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=77.02 E-value=3.5 Score=27.00 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
..++...+..|+.+...|..+...|+.|+.+|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666666555443
No 37
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=76.65 E-value=4.3 Score=28.24 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+..|..+|..|+++...+.+++..|+.|...|
T Consensus 42 L~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788999999999999999999999987654
No 38
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=76.40 E-value=3.7 Score=26.54 Aligned_cols=29 Identities=7% Similarity=0.186 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
..++...+..|+.|-..|.+++..|++++
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555543
No 39
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=76.31 E-value=3.4 Score=28.21 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=19.9
Q ss_pred HHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 163 AARAFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 163 ~~~~~~~~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+-+.|.++- +..+.++...|..|+.+...+..+|..|++++..
T Consensus 19 AQRafReRK--~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 19 AQRAFRKRK--EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555431 1223345555555555444444555544444443
No 40
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=74.98 E-value=3.6 Score=28.31 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
+..+..+|..|.++...|.+++..|++|
T Consensus 52 L~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 52 LDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577889999999999999999999886
No 41
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=73.54 E-value=3.3 Score=24.23 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 028377 187 LKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 187 l~~E~~~~~~~~~~L~~el~~~ 208 (210)
|++....|+.+|..|+.|..||
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 4444445555555555555554
No 42
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=72.76 E-value=4.2 Score=27.77 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=30.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
++..+..++......|..|...|++++..|+.||..+
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556677888888889999999999999999998764
No 43
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=72.69 E-value=5.9 Score=23.09 Aligned_cols=22 Identities=5% Similarity=0.086 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 028377 187 LKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 187 l~~E~~~~~~~~~~L~~el~~~ 208 (210)
|++-...+.++|..|+.|+.||
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3444444555555555555554
No 44
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=72.31 E-value=5.4 Score=26.43 Aligned_cols=34 Identities=6% Similarity=0.111 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
....++...+..|+.+...|..+...|+.|+.+|
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777777777777776554
No 45
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=72.15 E-value=3.8 Score=27.26 Aligned_cols=32 Identities=6% Similarity=0.124 Sum_probs=23.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
....++...+..|+.|...|..++..|+++|.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777888888888888888888887763
No 46
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=71.72 E-value=6.6 Score=27.69 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 182 ALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.....|..+.+.+.++|+.|+++|..|
T Consensus 59 ~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 59 AEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444445566778888888887654
No 47
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=71.41 E-value=5.8 Score=26.18 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
...++...+..|+.+...|..+...|++|+..|
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666667666666666666666666544
No 48
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=71.39 E-value=2.1 Score=36.32 Aligned_cols=34 Identities=26% Similarity=0.137 Sum_probs=27.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.....+.+...+|.++.+.+++|+.+|++||++|
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555677778999999999999999999876
No 49
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=71.22 E-value=6.5 Score=23.03 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+.++...+..|-.|...|..+..+||.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345555566666666666666655554
No 50
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=70.42 E-value=6.3 Score=23.11 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 028377 186 KLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 186 ~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.|++....+..+|..|+.|+.||
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444555566666666666554
No 51
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=69.84 E-value=7.8 Score=21.96 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 184 ISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 184 i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+..|++|...+..+|-+|.||...|
T Consensus 3 vaqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3467778888888888888887654
No 52
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=69.84 E-value=5.9 Score=28.14 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=27.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
-+.+..++...+..|+.|-..|..++..|+.|+..|
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777788888888888888888888887754
No 53
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=69.75 E-value=6 Score=27.82 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=26.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
.+..+...+...|..|..|...|.++|..|.+|.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788899989998888888888888865544
No 54
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=68.87 E-value=10 Score=28.95 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=41.7
Q ss_pred eeeEEEEEEeCCCCeE-EEEEeecCCCcEEEe--CCCe-eeCCCC--eEEEEEEeccCccCCCCCCCCCeEEEEEEec
Q 028377 23 QISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-IVLPRS--TCDIIVTMQAQKEAPPDMQCKDKFLLQSVKT 94 (210)
Q Consensus 23 ~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~Vr--P~~G-iI~P~~--s~~V~Itlq~~~e~p~d~~~kDKFlVqs~~~ 94 (210)
...-.++.+|.+..+| -|.+.--.|+-|.++ |.+| .|.|+. .++-.+.+..... ...+=|+.|.+..-
T Consensus 48 ~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~~----~~l~LR~klsY~~~ 121 (140)
T 1gyu_A 48 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQK----QQLRMRIKLTYNHK 121 (140)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTTC----CCCCEEEEEEEEET
T ss_pred EEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEEC
Confidence 3556778899887655 788888889977776 6656 577733 3444444332111 12455666666553
No 55
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=68.59 E-value=6.8 Score=27.26 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=28.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
-+.+..++...+..|+.|-..|..++..|++|+..|
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777788889999999999999999988765
No 56
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=68.28 E-value=13 Score=28.58 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=41.6
Q ss_pred eeeEEEEEEeCCCCeE-EEEEeecCCCcEEEe--CCCe-eeCCCC--eEEEEEEeccCccCCCCCCCCCeEEEEEEec
Q 028377 23 QISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-IVLPRS--TCDIIVTMQAQKEAPPDMQCKDKFLLQSVKT 94 (210)
Q Consensus 23 ~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~Vr--P~~G-iI~P~~--s~~V~Itlq~~~e~p~d~~~kDKFlVqs~~~ 94 (210)
...-.++.+|.+..+| -|.+.--.|+-|.++ |.+| .|.|+. .++-.+.+..... .+-+=|+.|.+..-
T Consensus 54 ~~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~~----~~lklR~klsY~~~ 127 (146)
T 1iu1_A 54 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQK----QQLRMRIKLTYNHK 127 (146)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTTC----CCCCCEEEEEEEET
T ss_pred EEEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEEC
Confidence 3556778899877655 788888889877776 6656 577743 3443443332111 13456666766653
No 57
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=67.72 E-value=18 Score=27.15 Aligned_cols=69 Identities=7% Similarity=0.057 Sum_probs=49.6
Q ss_pred CCCeeeEEEEEEeCCCCe-EEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCCCCCCCeEEEEEEecCCC
Q 028377 20 LKKQISCSLQLSNKTDNY-VAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDG 97 (210)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~-VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~kDKFlVqs~~~~~~ 97 (210)
.++.+...++++|.+... =+|+|+-...+...-.-..+ |.||++.+|.++..+.. ...+-|..++-+.+
T Consensus 31 ~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~~--------~G~~~v~AvVD~~n 100 (127)
T 3idu_A 31 VNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPTQ--------EGMYRINATVDEEN 100 (127)
T ss_dssp TTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCSS--------CEEEEEEEEESTTC
T ss_pred CCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcCC--------CcEEEEEEEEcCCC
Confidence 367788999999998755 58999877666655443334 99999999999987531 24566766665554
No 58
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=66.71 E-value=6.1 Score=25.49 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 182 ALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+++..|+.+...|..+|..|++++..|
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999998765
No 59
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=65.99 E-value=7.5 Score=25.32 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=26.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
++.....++...-..|..+...|.+|+..|++.|.
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566677777888888888888888888887764
No 60
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=65.63 E-value=11 Score=27.56 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.+..+...|..|+.|++.|++++..|.-+|++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888999999999988888888876
No 61
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=65.52 E-value=10 Score=22.19 Aligned_cols=26 Identities=0% Similarity=0.037 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
.++...+..|-.+...|..|..+||.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34444455554444444444444443
No 62
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=64.55 E-value=9.5 Score=27.82 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 180 ARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
....+.+|.++.+.|..++.+|+++.+.|
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588899999999999999999987654
No 63
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=64.48 E-value=14 Score=23.60 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
...++...|..|+++...-...+..++++|+..|
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4567778888898888888999999999999865
No 64
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=63.21 E-value=12 Score=26.22 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+.++..+|..|+++...+.++...|+++...|
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L 78 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQL 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999988888876654
No 65
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=61.84 E-value=10 Score=27.61 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 182 ALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+.|..|..|...|+.+|+.|++|..
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777887777643
No 66
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=61.70 E-value=12 Score=21.94 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 028377 187 LKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 187 l~~E~~~~~~~~~~L~~el~~~ 208 (210)
|++-...+..+|..|+.|+.||
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHH
Confidence 3333444455555555555543
No 67
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=60.94 E-value=13 Score=24.58 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 181 RALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.+.+..|+.+...|..+|..|+.|+..|
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999998865
No 68
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.20 E-value=9.9 Score=29.10 Aligned_cols=31 Identities=29% Similarity=0.285 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
++.++.+.+.+|.+|.+.|..++.+|+.+|.
T Consensus 104 k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 104 KAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555543
No 69
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=60.18 E-value=14 Score=24.31 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=17.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+......+...-..|..|...|.++...|++-|
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555544
No 70
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=59.88 E-value=8.3 Score=24.97 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=24.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+-++=++++...+..|.+|...|.+++..|+++|
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445567888899999999999999999998765
No 71
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=59.45 E-value=25 Score=20.81 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+.++...+..|-.+...|-.|..+||..|
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34566667777777777777777777655
No 72
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=57.51 E-value=20 Score=23.22 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 180 ARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
++..+-.|.+|.+.|.++|++|++-|
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~l 33 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSL 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666665544
No 73
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=56.99 E-value=16 Score=21.66 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 185 SKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 185 ~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+.|++....+..++..|+.|..||
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL 27 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456667777777777777777665
No 74
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=56.82 E-value=12 Score=30.09 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.+=+...+..|.++...+.++|++|++|.+.+
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777776543
No 75
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=56.65 E-value=27 Score=20.37 Aligned_cols=25 Identities=12% Similarity=0.289 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 184 ISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 184 i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.+.|++-...|.++|..|+.|.+||
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4667888888999999999998876
No 76
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=55.52 E-value=54 Score=23.44 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=42.6
Q ss_pred eeeEecc--CCCeeeEEEEEEeCCC---CeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCc
Q 028377 13 ELKFPFE--LKKQISCSLQLSNKTD---NYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (210)
Q Consensus 13 eL~F~~~--~~k~~~~~l~L~N~s~---~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 75 (210)
.+....+ .++...+.++++|+=. ..+.|.|--..-.+=... ..|-|.||+++.+.+.+.|.+
T Consensus 9 ~I~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~-~~~~v~pg~~~~~~~~~~P~~ 75 (102)
T 2xzz_A 9 SLTLLGAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL-NVGDIGGNETVTLRQSFVPVR 75 (102)
T ss_dssp EEEESSCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE-EECCBCTTCEEEEEEEECCCS
T ss_pred EEEECCCcccCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE-EcCcCCCCCEEEEEEEEecCc
Confidence 3444443 3677889999999965 566888775433222111 136799999999999999864
No 77
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=55.45 E-value=24 Score=22.56 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+..+......|..+...|.+++..|+.+|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777777777888888888888775
No 78
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=51.81 E-value=41 Score=26.07 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=48.6
Q ss_pred eEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEE-EEeccCccCCCCCCCCCeEEEEEEecCC
Q 028377 25 SCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDII-VTMQAQKEAPPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 25 ~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~-Itlq~~~e~p~d~~~kDKFlVqs~~~~~ 96 (210)
...+-|.|.|+.++.|-.-+..-+.+.++ ..|.|.|+..+.|. +.+... ..--+|.||-+.-..
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~el-------n~~~~~~vQ~layK~ 93 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKDVL-------NEMERVAVQLIAFKD 93 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGGGG-------GGCSSEEEEEEEECS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChhHh-------cCCceEEEEEEEEcC
Confidence 45788999999999999998887787776 68999999888774 333332 234678888777665
No 79
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.67 E-value=23 Score=23.02 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=19.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
++.....++...-..|..+...|.+++..|++.|.
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666666666553
No 80
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=51.66 E-value=23 Score=26.14 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
..++...+.++.++...|.++.+.|+.||.++
T Consensus 84 ~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 84 AEEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667778888888899999999999999874
No 81
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=50.98 E-value=27 Score=24.92 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028377 183 LISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~L~~el 205 (210)
....|..|+..|.+++..+++|+
T Consensus 56 e~~~L~~e~~~L~~e~~~~~~e~ 78 (90)
T 2wt7_B 56 EKTQLIQQVEQLKQEVSRLARER 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 82
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=50.61 E-value=18 Score=27.70 Aligned_cols=35 Identities=6% Similarity=0.154 Sum_probs=28.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
++.+..++...|.+|.+|...+..++.+|++++..
T Consensus 23 Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 23 LRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp TTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444588899999999999999999999988653
No 83
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=50.50 E-value=21 Score=28.49 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
...++.+.|..|+++.....+++..++++|+..+
T Consensus 136 tV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl 169 (175)
T 3mud_A 136 TTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTL 169 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778889999999999999999999998754
No 84
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=50.48 E-value=28 Score=24.30 Aligned_cols=32 Identities=13% Similarity=0.036 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
..++...|..|..|...|+.+++.++.+|..|
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34666777777888888877777777777654
No 85
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=50.07 E-value=32 Score=21.08 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+|+.+.|.++-.|.....++...||..|..|
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888766544
No 86
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=49.52 E-value=25 Score=20.52 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
.++...+..|-.+...|-.+..+||.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555555555555555555554
No 87
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.47 E-value=31 Score=20.61 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKL 201 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L 201 (210)
+-|...+|++|.++..+|.++..+|
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888887777777766554
No 88
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.06 E-value=9 Score=28.83 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=40.3
Q ss_pred eeeEEEEEEeCCCCeE-EEEEeecCCCcEEEe--CCCe-eeCCCCe--EEEEEEeccCccCCCCCCCCCeEEEEEEec
Q 028377 23 QISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-IVLPRST--CDIIVTMQAQKEAPPDMQCKDKFLLQSVKT 94 (210)
Q Consensus 23 ~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~Vr--P~~G-iI~P~~s--~~V~Itlq~~~e~p~d~~~kDKFlVqs~~~ 94 (210)
...-.++.+|.+..+| -|.+.--.|+-|.++ |..| .|.|+.. ++-.+.+... .....+=|+.|.+..-
T Consensus 39 ~~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~~~ItQ~~~i~n~----~~~~l~lR~klsY~~~ 112 (131)
T 2e9g_A 39 LLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGGLPITQLFRILNP----NKAPLRLKLRLTYDHF 112 (131)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTCCCBCCCEEEECT----TCCCCCEEEEEEEECS
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCCCCEEEEEEEeCC----CCCCEEEEEEEEEEEC
Confidence 3556778899987655 788888888866655 6666 5878544 2222222221 1113455666666553
No 89
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=47.73 E-value=26 Score=24.62 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 179 EARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
++-..|..|.+|...+.++|..|+.
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777777777777765
No 90
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=46.98 E-value=30 Score=25.02 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=31.2
Q ss_pred hhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 167 FTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 167 ~~~~~~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+.+..+.+..+.++.....|-.+..+.+.+-++.|||||-
T Consensus 56 lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 56 LAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344566667778888888888888888888999999984
No 91
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=46.73 E-value=50 Score=24.54 Aligned_cols=38 Identities=29% Similarity=0.534 Sum_probs=25.7
Q ss_pred CCCCcc-eEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEee
Q 028377 1 MSTGEL-LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT 44 (210)
Q Consensus 1 m~~~~l-L~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKT 44 (210)
|..++| +.|+|.. .+......|+|+|+++..+-+..-+
T Consensus 2 ~~~~~l~~~v~~~~------~g~~v~~~ltv~N~s~~~v~l~f~S 40 (120)
T 3isy_A 2 MENQEVVLSIDAIQ------EPEQIKFNMSLKNQSERAIEFQFST 40 (120)
T ss_dssp --CCSEEEEEEEEE------CSSCEEEEEEEEECSSSCEEEEESS
T ss_pred ccccEEEEEEeecc------CCCeEEEEEEEEcCCCCcEEEEeCC
Confidence 444444 5566654 3457788999999999998887765
No 92
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=44.94 E-value=33 Score=26.45 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=39.0
Q ss_pred EEEEEEeCCCCeE-EEEEeecCCCcEEEe--CCCe-eeCCCCe------EEEEEEeccCccCCCCCCCCCeEEEEEEec
Q 028377 26 CSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-IVLPRST------CDIIVTMQAQKEAPPDMQCKDKFLLQSVKT 94 (210)
Q Consensus 26 ~~l~L~N~s~~~V-aFKVKTT~P~~Y~Vr--P~~G-iI~P~~s------~~V~Itlq~~~e~p~d~~~kDKFlVqs~~~ 94 (210)
-.++.+|.+..+| -|.+.--.|+-|.++ |.+| .|.|+.. ++-.+.+..... ...+=|+.|.+..-
T Consensus 57 i~~~~~N~s~~~is~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~~~~~ItQ~m~v~n~~~----~~l~LR~klsY~~~ 131 (153)
T 1p4u_A 57 VVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQPPSGTELSPFSPIQPPAAITQVMLLANPLK----EKVRLRYKLTFALG 131 (153)
T ss_dssp EEEEEEECSSSCBEEEEEEEECBTTSEEEECCCSCSCBCCCBTTBCCCEEEEEEEEECTTC----CCCCEEEEEEEEET
T ss_pred EEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCcCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEEC
Confidence 3667789877655 788888888877766 5556 4767553 444444432211 23455666666553
No 93
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.14 E-value=35 Score=22.32 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=22.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
++.....++...-..|..+...|..|+..|++-|
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666777777777777777776654
No 94
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=43.47 E-value=30 Score=24.00 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
..|--..+.|-.|+++.....+++..++++|+..+
T Consensus 37 ~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL 71 (77)
T 3mtu_E 37 VNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44556677899999999999999999999998754
No 95
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=43.45 E-value=42 Score=23.84 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=20.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
+.....++...+..|..|...+..+...+++.++.|+
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334445555555566666666665555555555543
No 96
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.15 E-value=46 Score=23.01 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
.++.+.+..|+.|+..+..++..+++-..+
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r 62 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLK 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888887775544
No 97
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.98 E-value=37 Score=21.61 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028377 178 TEARALISKLKDEKNNAVQ 196 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~ 196 (210)
+++.+.+..|+++...+..
T Consensus 29 ~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 98
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=42.66 E-value=51 Score=19.44 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+.++...+..|-.+...|..+..+||.-|
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44555666666666666666666666543
No 99
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=42.24 E-value=44 Score=22.97 Aligned_cols=29 Identities=14% Similarity=0.262 Sum_probs=22.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+-...+...|..|.+..+.|..||.-||+
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888876
No 100
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=40.09 E-value=78 Score=20.83 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=19.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+.+..++++.=..|.+|..-+....++||.|.-
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 344555555556666666666666666666643
No 101
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=40.05 E-value=53 Score=23.03 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
-+.++...-.+|-++...+.+++..|++|++.+
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777778888888888888877654
No 102
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=39.45 E-value=33 Score=24.07 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 179 EARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
++-..|..+.+|+..+.++|..|+.
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888888887764
No 103
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=38.84 E-value=58 Score=24.11 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=28.9
Q ss_pred EEEEEEeCCCCeEE---EEEeecCCC---cEEEeCCCeeeCCCCeEEE
Q 028377 26 CSLQLSNKTDNYVA---FKVKTTNPK---KYCVRPNTGIVLPRSTCDI 67 (210)
Q Consensus 26 ~~l~L~N~s~~~Va---FKVKTT~P~---~Y~VrP~~GiI~P~~s~~V 67 (210)
..++|.|.+++.+. |+++-...+ .|.. |..=+|.||.+++|
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 47899999887764 788755443 3544 65568999988654
No 104
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=38.29 E-value=34 Score=24.39 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=29.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
++.+...+...|.+|++....+..+..+|+.+|..+|
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777888999999999999999998887765
No 105
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=38.25 E-value=49 Score=24.02 Aligned_cols=34 Identities=9% Similarity=-0.003 Sum_probs=25.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.+...+.+.+..|.++.+.|-+....+++.|..|
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888888777654
No 106
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=37.93 E-value=54 Score=23.29 Aligned_cols=31 Identities=3% Similarity=0.057 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.++.+.+..|..|+..+-.+...++.|+.++
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888877777777776654
No 107
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=37.34 E-value=60 Score=18.75 Aligned_cols=26 Identities=4% Similarity=0.009 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
.++...|..|..+...+..|..+||.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555666666666666666666654
No 108
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=36.23 E-value=1.6e+02 Score=27.39 Aligned_cols=50 Identities=12% Similarity=0.128 Sum_probs=38.4
Q ss_pred eeEEEEEEeCCCCeEEEEEeecCCCc--EEEeCCCeee-CCCCeEEEEEEecc
Q 028377 24 ISCSLQLSNKTDNYVAFKVKTTNPKK--YCVRPNTGIV-LPRSTCDIIVTMQA 73 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKTT~P~~--Y~VrP~~GiI-~P~~s~~V~Itlq~ 73 (210)
.+..-+++|.+...-.|+++.+.|.- -.|.|..=.+ ..|++..++|++..
T Consensus 539 ~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~ 591 (621)
T 3vta_A 539 QYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG 591 (621)
T ss_dssp EEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe
Confidence 44456799999998999999998874 4567887655 46788888888764
No 109
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=36.09 E-value=44 Score=23.36 Aligned_cols=36 Identities=6% Similarity=0.170 Sum_probs=29.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
......+...|..|++....+..+..+|+..|-.+|
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~ 106 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAM 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677888999999999999999999888776
No 110
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=35.84 E-value=1e+02 Score=26.69 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=48.7
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCccCCCCCCCCCeEEEEEEecCC
Q 028377 26 CSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTND 96 (210)
Q Consensus 26 ~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~kDKFlVqs~~~~~ 96 (210)
..+.|+|.++- -|.++-+.+..|.+.+..=-|+|+++.++.|-+-... + ...=+|-|--+.+.+
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~ 333 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGI--K---GGDVNFEVTNFIVAP 333 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTC--C---CCEEEEEEEEEEEET
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEeccccc--c---ceEEEEEeeeeeecC
Confidence 68889998875 5778889999999999999999999999998776432 1 234566665554443
No 111
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.80 E-value=66 Score=22.09 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 183 LISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
....+..+-..|.++|..|+.++..
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~ 61 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQ 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555543
No 112
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=35.70 E-value=53 Score=21.63 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=23.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+.-+.-..+.|..|..=.+++.+|.+.||.++..|
T Consensus 19 K~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~L 53 (63)
T 2w6a_A 19 KKALATSEAKVQQLMKVNSSLSDELRKLQREIHKL 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 33344555677777777777777777777776544
No 113
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=34.98 E-value=68 Score=18.69 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 184 ISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 184 i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
-.+|--|+..+...+++|.+.|+++
T Consensus 9 E~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 9 EQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578888899999999999988875
No 114
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=34.55 E-value=31 Score=18.77 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHh
Q 028377 194 AVQQNNKLRQDLV 206 (210)
Q Consensus 194 ~~~~~~~L~~el~ 206 (210)
+.|.|.+|+||+.
T Consensus 5 lkqknarlkqeia 17 (28)
T 3ra3_B 5 LKQKNARLKQEIA 17 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHH
Confidence 4455555555543
No 115
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=34.21 E-value=76 Score=23.09 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=12.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
.+++.+|+=....|-.|+.++.=|+.-|+.
T Consensus 8 EEKyrKAMVsnAQLDNEKsal~YqVdlLKD 37 (103)
T 4h22_A 8 EEKYKKAMVSNAQLDNEKTNFMYQVDTLKD 37 (103)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333
No 116
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=34.15 E-value=70 Score=18.57 Aligned_cols=25 Identities=0% Similarity=0.073 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 184 ISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 184 i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.+.|++-...|.++|..|+.|..||
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3567777888888888888888876
No 117
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.99 E-value=91 Score=19.82 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQ 197 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~ 197 (210)
|+++..++..|..|-..|++|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrE 25 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQE 25 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHH
Confidence 455555555555444444443
No 118
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=33.96 E-value=64 Score=23.87 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=29.9
Q ss_pred EEEEEEeCCCCeE---EEEEeecC---CCcEEEeCCCeeeCCCCeEEEEEEec
Q 028377 26 CSLQLSNKTDNYV---AFKVKTTN---PKKYCVRPNTGIVLPRSTCDIIVTMQ 72 (210)
Q Consensus 26 ~~l~L~N~s~~~V---aFKVKTT~---P~~Y~VrP~~GiI~P~~s~~V~Itlq 72 (210)
..++|.|.+++.+ .|+++-.. +..-+.-|..=+|.||.+++ |.-.
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vt--Iws~ 69 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVT--IWAA 69 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEE--EEET
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEE--EEeC
Confidence 4789999988766 47777552 22333456667899998754 5544
No 119
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=32.98 E-value=42 Score=24.78 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 028377 186 KLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 186 ~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
++.+|+..|.+|+..||.++.+|
T Consensus 87 kl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHHHHHHHhc
Confidence 34455555556666666655543
No 120
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=32.79 E-value=51 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=25.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+.+.++.+.+..|++|-+.|.+|-++.+++|++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlEk 184 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRFEK 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356677788888888888888888888887764
No 121
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.03 E-value=55 Score=24.45 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 183 LISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.+.+|.+|...|.++.+..-.|+++|
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666655555555555555443
No 122
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=31.80 E-value=1.2e+02 Score=20.58 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=32.2
Q ss_pred EeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEe
Q 028377 9 IEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 9 i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itl 71 (210)
++|++|+.+. ...-.+.++|.....-.|-+.... ..+.+.||++.++.++.
T Consensus 25 F~P~~i~v~~----G~tV~~~~~n~d~~~H~~~~~~~~--------~~~~~~pg~~~~~~~t~ 75 (100)
T 4hci_A 25 FNPNVITIPI----NESTTLLLKNKGKSEHTFTIKKLG--------IDVVVESGKEKNITVKP 75 (100)
T ss_dssp EESSEEEECT----TSCEEEEEEECSSSCEEEEEGGGT--------EEEEECTTCEEEEEECC
T ss_pred EeCCEEEECC----CCEEEEEEEcCCCceEEEEEecCC--------cceeecCCcceeEEEec
Confidence 4566666543 234567778887666666654322 13568899998887764
No 123
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=31.39 E-value=1.5e+02 Score=21.64 Aligned_cols=51 Identities=12% Similarity=0.157 Sum_probs=36.0
Q ss_pred CCeeeEEEEEEeCCCCeE-EEEEeecCCCcEEEe--CCCe-eeCCC--CeEEEEEEe
Q 028377 21 KKQISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-IVLPR--STCDIIVTM 71 (210)
Q Consensus 21 ~k~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~Vr--P~~G-iI~P~--~s~~V~Itl 71 (210)
.....-.+..+|.+..+| -|.+..-.|+-|.++ |.+| .|.|+ ..++=.+.+
T Consensus 30 ~~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I 86 (123)
T 3mnm_A 30 NSVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTI 86 (123)
T ss_dssp SSCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEE
T ss_pred CCeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEEEE
Confidence 334666788889987666 788998899977666 7677 68887 444444443
No 124
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.26 E-value=98 Score=21.05 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 181 RALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
...|..|+.+....-.+++.||-||+.+
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478888888888888889999998753
No 125
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=31.08 E-value=54 Score=22.75 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 179 EARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
++-..|..+.+|...+.++|..|+.-+
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777778888877776543
No 126
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=31.07 E-value=61 Score=22.81 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 179 EARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
.+.+.|..|.+++..+.++...++.+|
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777777777776666554
No 127
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=30.96 E-value=56 Score=26.26 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
.-....|..|+.+...|.+||++|++|
T Consensus 157 ~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 157 CYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777777777777777777776
No 128
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=30.73 E-value=80 Score=23.23 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
.++...++.|..|...+++.+..|+.-+
T Consensus 31 ~e~~~~~~~Lq~El~~lr~~~~~l~~~i 58 (111)
T 2v66_B 31 AQSYKQVSVLEDDLSQTRAIKEQLHKYV 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889999998888888877654
No 129
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.44 E-value=77 Score=21.24 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 182 ALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
..|..|+.+.+....+++.||.+|++
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777888877765
No 130
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.25 E-value=61 Score=26.47 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 179 EARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
++-..|..|.+|...+.++|..|+.=
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888887753
No 131
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=29.20 E-value=85 Score=18.51 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028377 182 ALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 182 ~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
..|..-.+|..+|.++|.+|++
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHh
Confidence 3444555666777777777653
No 132
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=29.06 E-value=1.1e+02 Score=30.13 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=35.7
Q ss_pred eeeEEEEEEeC------CCCeEE--------------EEEeecCCCcEEEeCCCee--eCCCCeEEEEEEec
Q 028377 23 QISCSLQLSNK------TDNYVA--------------FKVKTTNPKKYCVRPNTGI--VLPRSTCDIIVTMQ 72 (210)
Q Consensus 23 ~~~~~l~L~N~------s~~~Va--------------FKVKTT~P~~Y~VrP~~Gi--I~P~~s~~V~Itlq 72 (210)
.....|+|+|. .+=.|. |+|..-+-..|.+.|.-++ |.||+++.|.++..
T Consensus 39 ~~~~~~tl~n~~~~~~~~~w~iyf~~~r~i~~~~~~~~~i~~~~gd~~~l~P~~~f~~~~~g~~~~~~~~~~ 110 (858)
T 1c7s_A 39 CNRVLFTLSNDGQAIDGKDWVIYFHSPRQTLRVDNDQFKIAHLTGDLYKLEPTAKFSGFPAGKAVEIPVVAE 110 (858)
T ss_dssp EEEEEEEEEECSSCBCCCCCEEEEECSSCEEEECSTTEEEEECSTTEEEEEECTTCCCBCTTEEEEEEEEEE
T ss_pred eeEEEEEEEcCCCCcCCCCcEEEEecceeeecCCCCCeeEEEEeCeEEEEecCCCCCccCCCCEEEEEEEec
Confidence 35568999998 222333 3454445666888899887 99999999999754
No 133
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.01 E-value=50 Score=29.56 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=28.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+....+..+.+.+|+.+++.+.++...|++|+.++
T Consensus 31 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l 65 (405)
T 4b4t_J 31 ELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLL 65 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566678889999999999999999998865
No 134
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.73 E-value=1.1e+02 Score=21.38 Aligned_cols=32 Identities=22% Similarity=0.089 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+.++...-.+|-++...+..+...|++|+..|
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555566666666666666666666544
No 135
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=28.72 E-value=69 Score=24.50 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=28.0
Q ss_pred EEEEEEeCCCCeE---EEEEeecCCCc--EEEeCCCeeeCCCCeEEE
Q 028377 26 CSLQLSNKTDNYV---AFKVKTTNPKK--YCVRPNTGIVLPRSTCDI 67 (210)
Q Consensus 26 ~~l~L~N~s~~~V---aFKVKTT~P~~--Y~VrP~~GiI~P~~s~~V 67 (210)
..++|.|.+++.+ .|+|+=...+. .+.-|..=+|.||.+++|
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTI 84 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEE
Confidence 4789999988766 36776443332 234455568999988654
No 136
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.57 E-value=75 Score=21.57 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=23.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
..++.++.....++.+|..++...++.|..+|++
T Consensus 26 e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 26 EADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777777887778878777765
No 137
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=28.54 E-value=49 Score=21.62 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=16.3
Q ss_pred EEEEEeCCCCeEEEEEeecCC
Q 028377 27 SLQLSNKTDNYVAFKVKTTNP 47 (210)
Q Consensus 27 ~l~L~N~s~~~VaFKVKTT~P 47 (210)
.|++...+...|.|||+.|.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 567777777888888887766
No 138
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.36 E-value=99 Score=21.73 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
..++...|..++.|+..+.-+...|+.++.+
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666554
No 139
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.28 E-value=66 Score=24.39 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNA 194 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~ 194 (210)
+.++.+.+..+.+|...+
T Consensus 77 ~~~L~~~l~~~~kE~~~l 94 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDL 94 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333443333333333
No 140
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=27.91 E-value=90 Score=19.82 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
+.+++...|..|..+.+.++.+.+.-+.|-.|
T Consensus 12 ~V~~L~~kVdqLssdV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 12 DAQTANAKADQASNDANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666665555443
No 141
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=27.88 E-value=64 Score=26.95 Aligned_cols=52 Identities=15% Similarity=0.364 Sum_probs=34.5
Q ss_pred CCeeeEEEEEEeCCCCeE-EEEEeecCCCcEEEeCC----C-eeeCCCCeEEEEEEecc
Q 028377 21 KKQISCSLQLSNKTDNYV-AFKVKTTNPKKYCVRPN----T-GIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 21 ~k~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~VrP~----~-GiI~P~~s~~V~Itlq~ 73 (210)
+.++.-.|+++|.+..++ -|.|+-. ...|-+-|. . .-|.||+++++.|-+..
T Consensus 54 ~g~i~l~l~~~N~s~~~is~faIQfN-kNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~~ 111 (258)
T 2g30_A 54 QGHIYMEMNFTNKALQHMTDFAIQFN-KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNT 111 (258)
T ss_dssp TTEEEEEEEEEECSSSCBCCCEEEEC-CBTTCCEESSCCCCCSCBCTTCEEEEEEEEES
T ss_pred CCEEEEEEEEecCCccceeeeEEEEc-ccccCcccCccccCCCccCCCCcEEEEEeeec
Confidence 567788999999998664 3444432 222333332 2 44999999999988764
No 142
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=27.67 E-value=68 Score=23.73 Aligned_cols=63 Identities=10% Similarity=0.059 Sum_probs=36.9
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCe-----EEEEEeecC-------------CC-cE------EEeCCCeeeC
Q 028377 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNY-----VAFKVKTTN-------------PK-KY------CVRPNTGIVL 60 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~-----VaFKVKTT~-------------P~-~Y------~VrP~~GiI~ 60 (210)
-+.++|.+|..+.+ ...-.|+++|....+ --|-+-+.. +. .| .|--..++|.
T Consensus 11 ~m~F~p~~i~V~k~---G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~ 87 (128)
T 2iaa_C 11 SMQFNTKSIVVDKT---CKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIG 87 (128)
T ss_dssp TSCBSCSEEEECTT---CSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred CceEecCEEEEecC---CcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeC
Confidence 35667777766432 134589999997543 334444321 00 11 0111256789
Q ss_pred CCCeEEEEEEe
Q 028377 61 PRSTCDIIVTM 71 (210)
Q Consensus 61 P~~s~~V~Itl 71 (210)
||++..|+++.
T Consensus 88 pGes~~vtf~~ 98 (128)
T 2iaa_C 88 GGETDSVTFDV 98 (128)
T ss_dssp TTCEEEEEEES
T ss_pred CCCEEEEEEec
Confidence 99999999986
No 143
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.15 E-value=1.2e+02 Score=21.78 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 028377 190 EKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 190 E~~~~~~~~~~L~~el~~~ 208 (210)
-|..+-.++.++.+||+-|
T Consensus 41 ~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 41 LRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556777777777654
No 144
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.08 E-value=74 Score=22.46 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
....++...+..|.++...+..+...|++++..+
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~~ 104 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRIDMEIKRL 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777777777777776544
No 145
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=26.99 E-value=84 Score=23.89 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=30.6
Q ss_pred EEEEEEeCCCCeE---EEEEeecCCC---cEEEeCCCeeeCCCCeEEEEEEec
Q 028377 26 CSLQLSNKTDNYV---AFKVKTTNPK---KYCVRPNTGIVLPRSTCDIIVTMQ 72 (210)
Q Consensus 26 ~~l~L~N~s~~~V---aFKVKTT~P~---~Y~VrP~~GiI~P~~s~~V~Itlq 72 (210)
..|+|.|.++..+ .|+++=...+ .-+.-|..=+|.||.+++ |.-.
T Consensus 34 efV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~Vt--Iws~ 84 (139)
T 2lll_A 34 KFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVT--VWAA 84 (139)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEE--EEEG
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEE--EEeC
Confidence 5789999988766 4788865332 233356677889998764 5543
No 146
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=26.95 E-value=80 Score=16.97 Aligned_cols=21 Identities=19% Similarity=0.261 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028377 181 RALISKLKDEKNNAVQQNNKL 201 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L 201 (210)
...+-.|..|..++..+.+.|
T Consensus 6 kdevgelkgevralkdevkdl 26 (27)
T 3v86_A 6 KDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHhcc
Confidence 344455555555555554443
No 147
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=26.89 E-value=49 Score=24.20 Aligned_cols=20 Identities=5% Similarity=0.001 Sum_probs=15.7
Q ss_pred eCCCeeeCCCCeEEEEEEec
Q 028377 53 RPNTGIVLPRSTCDIIVTMQ 72 (210)
Q Consensus 53 rP~~GiI~P~~s~~V~Itlq 72 (210)
......|.||++..+.+++.
T Consensus 94 ~~~t~~l~pG~~~~~~~~~~ 113 (140)
T 1qhq_A 94 LAWTAMLNAGESGSVTFRTP 113 (140)
T ss_dssp EEECCCBCTTEEEEEEEECC
T ss_pred cccceeeCCCceeEEEEEeC
Confidence 34457899999999998873
No 148
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=26.81 E-value=45 Score=24.72 Aligned_cols=64 Identities=8% Similarity=0.042 Sum_probs=37.1
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCe-----EEEEEeecC-------------CC-cE------EEeCCCeeeC
Q 028377 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNY-----VAFKVKTTN-------------PK-KY------CVRPNTGIVL 60 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~-----VaFKVKTT~-------------P~-~Y------~VrP~~GiI~ 60 (210)
-+.++|.+|..+.+ ...-.|+++|...-+ --|-+-+.. +. .| .+--..++|.
T Consensus 12 ~m~F~p~~i~V~k~---G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~ 88 (129)
T 2ccw_A 12 AMQYNVKEIVVDKS---CKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIG 88 (129)
T ss_dssp TSCBSCSEEEECTT---CSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred CccEecceEEEecC---CCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEEC
Confidence 35566776665322 234589999998643 445544432 00 11 0111246789
Q ss_pred CCCeEEEEEEec
Q 028377 61 PRSTCDIIVTMQ 72 (210)
Q Consensus 61 P~~s~~V~Itlq 72 (210)
||++..|+++..
T Consensus 89 pGet~svtf~~~ 100 (129)
T 2ccw_A 89 GGESDSVTFDVS 100 (129)
T ss_dssp TTCEEEEEEEGG
T ss_pred CCCEEEEEEecc
Confidence 999999998863
No 149
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=26.45 E-value=99 Score=17.84 Aligned_cols=29 Identities=3% Similarity=0.079 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDL 205 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el 205 (210)
+.++...+..|-.+...|..|..+||.=|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34667788888888888888888888644
No 150
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=25.94 E-value=58 Score=24.63 Aligned_cols=34 Identities=35% Similarity=0.297 Sum_probs=27.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
++++.-+.+++..|+.+.+.+.+|..+|++|...
T Consensus 97 ed~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~ 130 (140)
T 3iyn_Q 97 DDKLTALLAQLDSLTRELNVVSQQLLDLRQQVSA 130 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888888999999999999999988654
No 151
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.62 E-value=1.1e+02 Score=19.16 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=23.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 175 ~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
..+.++...+..++++.+.++.+..+|+.++..
T Consensus 26 ~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 26 DEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566667777777777777777777776654
No 152
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=25.04 E-value=1.1e+02 Score=24.30 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=27.9
Q ss_pred EEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEE
Q 028377 27 SLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 27 ~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~I 69 (210)
.|++.|+|..+|.|-=-+.+-+.+ . .|.|.|+++..+.+
T Consensus 139 ~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~l 177 (205)
T 1klf_A 139 SLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVKL 177 (205)
T ss_dssp EEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceeec
Confidence 699999999999885322233333 2 37999999988764
No 153
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=24.49 E-value=1.2e+02 Score=20.47 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=4.1
Q ss_pred hHHHHHHHHHH
Q 028377 177 STEARALISKL 187 (210)
Q Consensus 177 ~~e~~~~i~~l 187 (210)
+.++...+.++
T Consensus 20 lk~~~ee~~~~ 30 (71)
T 1uix_A 20 LKEAQEQLSRL 30 (71)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 154
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=24.48 E-value=3e+02 Score=25.84 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=39.2
Q ss_pred eeEEEEEEeCCCCeEEEEEeecCCCcEE--EeCCCeee-CCCCeEEEEEEeccC
Q 028377 24 ISCSLQLSNKTDNYVAFKVKTTNPKKYC--VRPNTGIV-LPRSTCDIIVTMQAQ 74 (210)
Q Consensus 24 ~~~~l~L~N~s~~~VaFKVKTT~P~~Y~--VrP~~GiI-~P~~s~~V~Itlq~~ 74 (210)
.+..-++||.++..-.|+++.+.|.... |.|..=.. ..+++....|++.+.
T Consensus 560 ~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~ 613 (649)
T 3i6s_A 560 QKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYI 613 (649)
T ss_dssp EEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEec
Confidence 5678889999987788999999998765 55988766 489999999988753
No 155
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=24.37 E-value=2e+02 Score=20.58 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=34.5
Q ss_pred CCeeeEEEEEEeCCCCeEE-EEEeec-----------------CCCcEEEeCC--CeeeCC-CCeEEEEEEec
Q 028377 21 KKQISCSLQLSNKTDNYVA-FKVKTT-----------------NPKKYCVRPN--TGIVLP-RSTCDIIVTMQ 72 (210)
Q Consensus 21 ~k~~~~~l~L~N~s~~~Va-FKVKTT-----------------~P~~Y~VrP~--~GiI~P-~~s~~V~Itlq 72 (210)
..-....++|+|.++..|. ++|.=+ +-..|.|+|. .|-|.| |.++.+-+.-.
T Consensus 14 ~~Gf~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fGf~g~ 86 (107)
T 3ndz_E 14 GSGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNIN 86 (107)
T ss_dssp SSEEEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEEE
T ss_pred CCCEEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEEEEEe
Confidence 3445678999998765543 333322 2367899875 589999 98877665543
No 156
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=24.23 E-value=69 Score=22.23 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=17.6
Q ss_pred EEEEEEeCCCCeEEEEEeecCC
Q 028377 26 CSLQLSNKTDNYVAFKVKTTNP 47 (210)
Q Consensus 26 ~~l~L~N~s~~~VaFKVKTT~P 47 (210)
-.|++...+.+.|.||||.|.+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEECCCCh
Confidence 4677777777889999998776
No 157
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=23.99 E-value=2.6e+02 Score=21.81 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=39.1
Q ss_pred eeeEEEEEEeCCC-----CeEEEEEeecCCCc-EEEeCCCeeeCCCCeEEEEEEecc
Q 028377 23 QISCSLQLSNKTD-----NYVAFKVKTTNPKK-YCVRPNTGIVLPRSTCDIIVTMQA 73 (210)
Q Consensus 23 ~~~~~l~L~N~s~-----~~VaFKVKTT~P~~-Y~VrP~~GiI~P~~s~~V~Itlq~ 73 (210)
.....|+|+|+.+ .-++|.++...-.. --+-|..|.|+++++..|.|-+.-
T Consensus 63 ~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~v 119 (174)
T 1yyc_A 63 DYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKV 119 (174)
T ss_dssp EEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEEE
Confidence 3568999999977 45799999765433 457789999999999888776653
No 158
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=23.89 E-value=95 Score=21.68 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+..+..+|..|..|+..+.++..++++
T Consensus 34 L~ksvdYI~~Lq~e~~r~~e~e~r~k~ 60 (83)
T 4ath_A 34 LKASVDYIRKLQREQQRAKDLENRQKK 60 (83)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888877777665443
No 159
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.50 E-value=91 Score=22.57 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028377 179 EARALISKLKDEKNNAVQQNNK 200 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~ 200 (210)
++...|.+|+.|-..|+++|..
T Consensus 69 eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 69 ELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444433
No 160
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=23.40 E-value=1.2e+02 Score=19.00 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=19.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
++..+..+...|..|+.--....||+..|+.=
T Consensus 9 LKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 9 LKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34455666667777766555666666666543
No 161
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=23.19 E-value=78 Score=19.85 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 028377 189 DEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 189 ~E~~~~~~~~~~L~~el~~~ 208 (210)
+|...|.+....|++|.+++
T Consensus 27 dEV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 27 DEVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45566666777888888775
No 162
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=23.15 E-value=1e+02 Score=20.33 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 184 ISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 184 i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+.....|...++.+.+.|+-||+.+
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445667777777778888887765
No 163
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=22.99 E-value=81 Score=26.08 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=28.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
..+++...+.+.+.+.++|++++..+..+.|+.+..
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~ 210 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQ 210 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788888889999999888888877776643
No 164
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.92 E-value=88 Score=22.84 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=25.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 173 ~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.+.+...+...+.+|++....++++...++++|..+
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777777776654
No 165
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=22.89 E-value=1.1e+02 Score=24.62 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028377 181 RALISKLKDEKNNAVQQNNKLRQDLVSDY 209 (210)
Q Consensus 181 ~~~i~~l~~E~~~~~~~~~~L~~el~~~~ 209 (210)
+..|.-.-.....+...|.+||+|.+||.
T Consensus 153 rELi~~~L~~i~~L~a~N~hLqkENeRL~ 181 (186)
T 3q4f_C 153 RELICYCLDTIAENQAKNEHLQKENERLL 181 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667778888888888888888874
No 166
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=22.44 E-value=1e+02 Score=26.29 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 028377 190 EKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 190 E~~~~~~~~~~L~~el~~~ 208 (210)
|++++.++++.|++|+.+|
T Consensus 186 eie~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666554
No 167
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.43 E-value=1.2e+02 Score=24.66 Aligned_cols=32 Identities=19% Similarity=0.070 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
+.++...-.+|-++...+.+++..|++|+..|
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eL 141 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKEL 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555566666666666666666665543
No 168
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=22.27 E-value=2e+02 Score=19.81 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=31.8
Q ss_pred EeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEEEe
Q 028377 9 IEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (210)
Q Consensus 9 i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itl 71 (210)
+.|..|+.+. ...-.+.++|.....-.|-+.... + ...+.||++..+.++.
T Consensus 35 f~p~~i~v~~----G~~V~~~~~n~d~~~H~~~i~~~~-----~---~~~i~pG~~~~~~f~~ 85 (112)
T 1iby_A 35 NEPETLVVKK----GDAVKVVVENKSPISEGFSIDAFG-----V---QEVIKAGETKTISFTA 85 (112)
T ss_dssp EESCEEEEET----TCEEEEEEEECSSSCEEEEEGGGT-----E---EEEECTTCEEEEEEEC
T ss_pred EcCCEEEEeC----CCEEEEEEEECCCCeEEEEEcCCC-----c---eeEeCCCCEEEEEEEC
Confidence 3455555443 234567788887655566554321 1 4568999999888864
No 169
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.25 E-value=1.3e+02 Score=21.29 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=24.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028377 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLVS 207 (210)
Q Consensus 174 ~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~ 207 (210)
..+..++.....++.+|..+|...++.|..+|+.
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666777778888888888888887765
No 170
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=22.22 E-value=48 Score=27.60 Aligned_cols=33 Identities=9% Similarity=-0.121 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 176 ~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.+.+..+....+.++..++.++|+.|+++|+.|
T Consensus 142 ~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~L 174 (250)
T 2ve7_C 142 TYMEFLWQYKSSADKMQQLNAAHQEALMKLERL 174 (250)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666666666665543
No 171
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.19 E-value=1.1e+02 Score=21.49 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=18.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
+......++.+.=..|..+...|..|+..|++-|.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555444
No 172
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.94 E-value=83 Score=26.46 Aligned_cols=32 Identities=6% Similarity=0.120 Sum_probs=21.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 172 ~~~~~~~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
.+..+...+.+.+..+..|...|.+|+++|++
T Consensus 65 ~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 65 SLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555677777777777777777777764
No 173
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.82 E-value=1.2e+02 Score=24.71 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~el~~~ 208 (210)
.++.+.+..|++|-..+.++..+|+.+|+.+
T Consensus 135 ~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 135 AENQAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666654
No 174
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=21.61 E-value=1.6e+02 Score=18.57 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQD 204 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~e 204 (210)
.++...|.+++.|...++.....+|+.
T Consensus 11 i~Aqe~iLr~ErELEeAr~~La~iR~~ 37 (50)
T 2qdq_A 11 IAAQEEMLRKERELEEARKKLAQIRQQ 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888999999999988888874
No 175
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=21.31 E-value=1.5e+02 Score=22.81 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=29.5
Q ss_pred EEEEEEeCCCCeE---EEEEeecC---CCcEEEeCCCeeeCCCCeEEEEEEec
Q 028377 26 CSLQLSNKTDNYV---AFKVKTTN---PKKYCVRPNTGIVLPRSTCDIIVTMQ 72 (210)
Q Consensus 26 ~~l~L~N~s~~~V---aFKVKTT~---P~~Y~VrP~~GiI~P~~s~~V~Itlq 72 (210)
..|+|.|.++..+ .|+|+=.. +..-+.-|..=+|.||.+++ |+-.
T Consensus 50 efV~L~N~s~~~~~L~GW~L~r~vdg~~~~~y~Fp~~~~L~pg~tVt--Iws~ 100 (151)
T 1ufg_A 50 KFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVT--IWAS 100 (151)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCCEEEECCTTCEECTTCEEE--EEES
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEE--EEeC
Confidence 4789999988666 47776432 22334456677889998754 4543
No 176
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=21.25 E-value=1.2e+02 Score=19.16 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028377 183 LISKLKDEKNNAVQQNNKLRQDLV 206 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~L~~el~ 206 (210)
++..|.++...|.+++..|+..|.
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666677777777776553
No 177
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=21.24 E-value=13 Score=25.67 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 028377 187 LKDEKNNAVQQNNKLRQDLVSD 208 (210)
Q Consensus 187 l~~E~~~~~~~~~~L~~el~~~ 208 (210)
..+|...|.+||..|+.|++.|
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~L 85 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHP 85 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777654
No 178
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.02 E-value=1.3e+02 Score=17.41 Aligned_cols=26 Identities=0% Similarity=0.107 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 178 TEARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 178 ~e~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
.++...+..|-.+...+-.|..+|+.
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34445555555555555555555554
No 179
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.71 E-value=89 Score=26.57 Aligned_cols=32 Identities=6% Similarity=-0.093 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhc
Q 028377 177 STEARALISKLKDEKNNAVQQNNKLRQD---LVSD 208 (210)
Q Consensus 177 ~~e~~~~i~~l~~E~~~~~~~~~~L~~e---l~~~ 208 (210)
..++...+..|.+++..+.++..+|++. ++.|
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L 135 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELFGKAAEKL 135 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4566677777777777787777777777 5543
No 180
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=20.61 E-value=1.6e+02 Score=18.08 Aligned_cols=18 Identities=11% Similarity=0.051 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028377 183 LISKLKDEKNNAVQQNNK 200 (210)
Q Consensus 183 ~i~~l~~E~~~~~~~~~~ 200 (210)
++..-+.+|..|..|.+.
T Consensus 19 ql~eqt~~rv~lq~qlq~ 36 (48)
T 2kes_A 19 QLKEQTVERVTLQNQLQQ 36 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344445454444333
No 181
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=20.51 E-value=1.2e+02 Score=24.61 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=27.7
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEE
Q 028377 26 CSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 26 ~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~I 69 (210)
..|++.|+|..+|.|-=-+-+-+ .+ ..+.|.|+++..+.+
T Consensus 148 ~~l~v~NptPyyvtl~~l~~~g~--~i--~~~mv~P~s~~~~~l 187 (218)
T 4ay0_A 148 GKLIAENPSPFYMNIGELTFGGK--SI--PSHYIPPKSTWAFDL 187 (218)
T ss_dssp TEEEEEECSSSCEEEEEEEETTE--EC--CCCEECTTEEEEEEC
T ss_pred CEEEEECCCCCEEEEEEEEECCE--Ec--cCcEECCCCeeEEEC
Confidence 35999999999998842222222 33 248999999877654
No 182
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=20.51 E-value=1.4e+02 Score=19.43 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=29.4
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCeEEEEEeecCCCcEEEeCCCeeeCCCCeEEEEE
Q 028377 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~I 69 (210)
-+..+|..|.+.. + ..+++.|.+...-.|-+....+... ..+.+.||++..+.+
T Consensus 13 ~~~f~P~~i~v~~--G----d~V~~~n~~~~~H~v~~~~~~~~~~----~~~~~~~g~~~~~~f 66 (91)
T 1bxv_A 13 MLAFEPSTIEIQA--G----DTVQWVNNKLAPHNVVVEGQPELSH----KDLAFSPGETFEATF 66 (91)
T ss_dssp CSSEESSEEEECT--T----CEEEEEECSSCCEEEEETTCGGGCE----EEEECSTTCEEEEEC
T ss_pred ccEEeCCEEEECC--C----CEEEEEECCCCCcEEEEeCCCccCc----ccceeCCCCEEEEEe
Confidence 3567787777653 2 2456778765433443332111111 235788998877654
No 183
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=20.39 E-value=71 Score=26.58 Aligned_cols=43 Identities=30% Similarity=0.365 Sum_probs=27.6
Q ss_pred eEEEEEEeCCCCeEEEE-EeecC-CCcEEEeCCCeeeCCCCeEEEEE
Q 028377 25 SCSLQLSNKTDNYVAFK-VKTTN-PKKYCVRPNTGIVLPRSTCDIIV 69 (210)
Q Consensus 25 ~~~l~L~N~s~~~VaFK-VKTT~-P~~Y~VrP~~GiI~P~~s~~V~I 69 (210)
...|++.|+|..+|.|- |+... ...+.. ..|.|.|+++..+.+
T Consensus 172 ~~~L~v~Nptpyyvtl~~l~~~~~~~~~~~--~~~mV~P~s~~~~~l 216 (257)
T 3q48_A 172 KTVVQVNNPTPYYVSFASVELIVDGRVMSV--GKGMVAPFSTKEFDW 216 (257)
T ss_dssp --CEEEEECSSSCEEEEEEEEEETTEEEEE--EEEEECTTEEEEECC
T ss_pred CcEEEEECCCceEEEEEEEEEccCCeeccc--cceeEcCCceeEEec
Confidence 34699999999999874 33222 222322 347899999888754
No 184
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.34 E-value=1.2e+02 Score=22.32 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028377 179 EARALISKLKDEKNNAVQQNNKL 201 (210)
Q Consensus 179 e~~~~i~~l~~E~~~~~~~~~~L 201 (210)
++...|..|+-|..++..++..|
T Consensus 40 elrr~iq~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 33344444444444444333333
No 185
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.06 E-value=1.3e+02 Score=16.86 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028377 180 ARALISKLKDEKNNAVQQNNKLRQ 203 (210)
Q Consensus 180 ~~~~i~~l~~E~~~~~~~~~~L~~ 203 (210)
+.+.|..|..|...+.=+...|+|
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555566666665555555554
No 186
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=20.05 E-value=83 Score=23.22 Aligned_cols=64 Identities=8% Similarity=0.105 Sum_probs=36.8
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEeCCCCe-----EEEEEeecC-------------CC-cE------EEeCCCeeeC
Q 028377 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNY-----VAFKVKTTN-------------PK-KY------CVRPNTGIVL 60 (210)
Q Consensus 6 lL~i~P~eL~F~~~~~k~~~~~l~L~N~s~~~-----VaFKVKTT~-------------P~-~Y------~VrP~~GiI~ 60 (210)
-+.++|.+|..+.+ ...-.|+++|....+ --|-+-+.. +. .| .|--..++|.
T Consensus 12 ~m~F~p~~i~V~k~---G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~ 88 (128)
T 1nwp_A 12 QMSFNTKDIAIDKS---CKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIG 88 (128)
T ss_dssp TSCBSCSEEEECTT---CSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBC
T ss_pred CccEecCEEEEecC---CCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeeeeeC
Confidence 45667777776321 134579999997543 344443321 00 01 0111245799
Q ss_pred CCCeEEEEEEec
Q 028377 61 PRSTCDIIVTMQ 72 (210)
Q Consensus 61 P~~s~~V~Itlq 72 (210)
||++..|+++..
T Consensus 89 pGet~svtf~~~ 100 (128)
T 1nwp_A 89 AGEKDSVTFDVS 100 (128)
T ss_dssp TTCEEEEEEEGG
T ss_pred CCCEEEEEEecc
Confidence 999999999863
Done!