Query 028378
Match_columns 210
No_of_seqs 172 out of 830
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 10:35:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 1.8E-26 3.9E-31 169.9 10.2 79 92-170 1-79 (79)
2 KOG1616 Protein involved in Sn 99.9 3.1E-22 6.7E-27 179.4 13.5 139 37-175 23-165 (289)
3 cd02861 E_set_proteins_like E 99.8 1.6E-19 3.4E-24 132.9 9.9 76 93-169 2-81 (82)
4 cd02858 Esterase_N_term Estera 99.3 1.4E-11 3.1E-16 91.5 9.6 75 94-169 7-84 (85)
5 cd02688 E_set E or "early" set 98.9 1.2E-08 2.5E-13 72.1 8.2 67 94-160 5-74 (83)
6 PF02922 CBM_48: Carbohydrate- 98.6 7.9E-08 1.7E-12 69.8 6.5 56 94-149 12-74 (85)
7 cd02854 Glycogen_branching_enz 98.6 3.1E-07 6.8E-12 70.5 8.5 65 94-158 6-85 (99)
8 PF00686 CBM_20: Starch bindin 97.9 5.7E-05 1.2E-09 56.7 7.1 53 93-145 2-68 (96)
9 cd02855 Glycogen_branching_enz 97.9 0.00019 4.1E-09 53.6 9.6 65 95-159 23-96 (106)
10 cd02860 Pullulanase_N_term Pul 97.8 0.0001 2.2E-09 55.6 7.5 63 95-159 10-85 (100)
11 cd05808 CBM20_alpha_amylase Al 97.8 8.5E-05 1.8E-09 55.1 6.6 53 93-145 1-63 (95)
12 COG0296 GlgB 1,4-alpha-glucan 97.7 0.0001 2.2E-09 73.1 7.4 77 94-171 37-123 (628)
13 cd05818 CBM20_water_dikinase P 97.5 0.0012 2.7E-08 49.6 10.0 53 93-145 2-61 (92)
14 cd02856 Glycogen_debranching_e 97.5 0.00047 1E-08 52.4 7.7 52 95-148 11-67 (103)
15 PRK12313 glycogen branching en 97.5 0.00034 7.4E-09 68.8 7.9 65 94-158 39-111 (633)
16 cd05820 CBM20_novamyl Novamyl 97.5 0.0016 3.5E-08 49.9 9.8 54 92-145 2-70 (103)
17 PRK12568 glycogen branching en 97.4 0.00073 1.6E-08 68.1 9.8 64 94-158 139-211 (730)
18 cd05809 CBM20_beta_amylase Bet 97.4 0.0012 2.6E-08 50.2 8.4 54 92-145 2-68 (99)
19 cd05814 CBM20_Prei4 Prei4, N-t 97.4 0.0011 2.3E-08 52.1 8.1 52 95-146 3-67 (120)
20 PLN02447 1,4-alpha-glucan-bran 97.3 0.00064 1.4E-08 68.8 7.8 62 94-156 115-191 (758)
21 cd05811 CBM20_glucoamylase Glu 97.3 0.0027 5.8E-08 48.3 9.2 55 91-145 5-73 (106)
22 PRK14705 glycogen branching en 97.2 0.0008 1.7E-08 71.1 7.4 62 94-156 639-710 (1224)
23 PRK05402 glycogen branching en 97.1 0.0023 5.1E-08 64.1 9.4 64 94-157 132-204 (726)
24 PRK14706 glycogen branching en 97.1 0.0011 2.5E-08 65.7 7.1 75 94-170 39-122 (639)
25 cd02852 Isoamylase_N_term Isoa 97.0 0.0023 4.9E-08 49.7 6.8 54 95-150 9-73 (119)
26 cd05813 CBM20_genethonin_1 Gen 97.0 0.003 6.5E-08 47.3 6.8 53 93-145 1-62 (95)
27 TIGR02402 trehalose_TreZ malto 96.9 0.004 8.7E-08 60.5 8.5 60 95-159 1-64 (542)
28 cd05807 CBM20_CGTase CGTase, C 96.8 0.008 1.7E-07 45.6 8.1 54 92-145 2-70 (101)
29 cd05816 CBM20_DPE2_repeat2 Dis 96.8 0.012 2.5E-07 44.6 8.9 51 95-145 2-64 (99)
30 cd02853 MTHase_N_term Maltooli 96.7 0.0054 1.2E-07 45.0 6.3 60 95-158 10-72 (85)
31 cd05817 CBM20_DSP Dual-specifi 96.7 0.0062 1.3E-07 46.3 6.8 45 101-145 11-62 (100)
32 TIGR01515 branching_enzym alph 96.7 0.0078 1.7E-07 59.3 9.2 64 94-158 29-102 (613)
33 cd05467 CBM20 The family 20 ca 96.6 0.0083 1.8E-07 44.2 6.7 45 101-145 11-65 (96)
34 cd05810 CBM20_alpha_MTH Glucan 96.5 0.01 2.3E-07 45.1 6.7 53 93-145 1-64 (97)
35 PRK05402 glycogen branching en 96.3 0.011 2.5E-07 59.2 7.6 61 94-155 29-95 (726)
36 PF11806 DUF3327: Domain of un 95.8 0.13 2.8E-06 40.9 9.9 81 93-173 2-114 (122)
37 PF03423 CBM_25: Carbohydrate 95.5 0.096 2.1E-06 39.2 7.8 54 94-147 3-70 (87)
38 TIGR02104 pulA_typeI pullulana 95.5 0.046 1E-06 53.7 7.5 63 95-158 21-94 (605)
39 cd05815 CBM20_DPE2_repeat1 Dis 95.2 0.22 4.7E-06 37.6 8.9 45 101-145 11-65 (101)
40 PLN02960 alpha-amylase 94.4 0.036 7.8E-07 57.2 3.6 53 94-146 129-198 (897)
41 cd05806 CBM20_laforin Laforin 94.3 0.25 5.5E-06 39.1 7.5 48 98-145 10-74 (112)
42 PRK10439 enterobactin/ferric e 93.8 0.33 7.1E-06 45.8 8.5 86 90-175 36-165 (411)
43 PLN02950 4-alpha-glucanotransf 93.0 0.75 1.6E-05 47.9 10.2 70 88-157 148-234 (909)
44 TIGR02100 glgX_debranch glycog 92.9 0.32 7E-06 49.0 7.4 52 95-148 16-74 (688)
45 TIGR02102 pullulan_Gpos pullul 92.6 0.64 1.4E-05 49.4 9.2 64 95-158 329-408 (1111)
46 PLN02950 4-alpha-glucanotransf 92.1 1.1 2.5E-05 46.6 10.2 56 90-145 6-74 (909)
47 PLN02316 synthase/transferase 91.6 1.2 2.7E-05 47.0 9.9 82 89-174 325-421 (1036)
48 cd02857 CD_pullulan_degrading_ 91.3 1.7 3.7E-05 32.5 8.1 55 91-145 16-79 (116)
49 TIGR02103 pullul_strch alpha-1 91.2 1.1 2.4E-05 46.7 9.0 77 94-172 136-228 (898)
50 PRK03705 glycogen debranching 90.9 0.84 1.8E-05 45.8 7.6 62 95-158 21-100 (658)
51 PLN02316 synthase/transferase 90.0 1.8 3.8E-05 45.9 9.3 58 88-145 486-557 (1036)
52 PF02903 Alpha-amylase_N: Alph 88.5 2.6 5.7E-05 32.6 7.2 64 90-153 20-98 (120)
53 PRK14510 putative bifunctional 84.8 3.3 7.2E-05 44.5 7.9 54 94-149 24-84 (1221)
54 PF01357 Pollen_allerg_1: Poll 84.7 2.8 6E-05 31.0 5.2 59 91-152 12-77 (82)
55 PLN02877 alpha-amylase/limit d 83.4 3 6.6E-05 43.9 6.7 63 94-158 223-302 (970)
56 PLN03244 alpha-amylase; Provis 79.0 2 4.3E-05 44.6 3.5 42 96-137 135-185 (872)
57 COG3794 PetE Plastocyanin [Ene 77.9 6.2 0.00013 32.1 5.5 49 93-143 62-112 (128)
58 KOG0470 1,4-alpha-glucan branc 68.6 8 0.00017 39.7 4.8 38 95-133 115-157 (757)
59 TIGR03009 plancto_dom_2 Planct 68.6 7.3 0.00016 34.1 4.0 16 143-158 66-84 (210)
60 PRK10785 maltodextrin glucosid 66.6 35 0.00076 33.8 8.8 59 90-148 18-87 (598)
61 PF03370 CBM_21: Putative phos 56.6 68 0.0015 24.8 7.2 59 90-148 18-99 (113)
62 PF11896 DUF3416: Domain of un 46.5 27 0.00058 30.0 3.7 38 114-152 56-99 (187)
63 TIGR02657 amicyanin amicyanin. 45.7 46 0.00099 24.0 4.4 48 94-142 20-69 (83)
64 KOG0045 Cytosolic Ca2+-depende 41.4 24 0.00052 35.5 3.0 26 135-160 115-143 (612)
65 TIGR03503 conserved hypothetic 41.2 48 0.001 31.5 4.9 24 125-148 170-195 (374)
66 PF05520 Citrus_P18: Citrus tr 41.0 13 0.00029 30.4 1.0 10 199-208 139-148 (167)
67 PF13473 Cupredoxin_1: Cupredo 40.8 60 0.0013 24.2 4.5 47 91-142 41-91 (104)
68 TIGR02375 pseudoazurin pseudoa 37.2 1.1E+02 0.0024 24.1 5.7 49 92-142 22-71 (116)
69 TIGR03102 halo_cynanin halocya 36.1 1.1E+02 0.0023 24.2 5.4 47 94-142 51-99 (115)
70 PLN00115 pollen allergen group 35.1 1.3E+02 0.0028 24.1 5.8 48 102-151 46-97 (118)
71 PLN03023 Expansin-like B1; Pro 32.7 97 0.0021 27.8 5.2 50 93-146 162-216 (247)
72 PF03422 CBM_6: Carbohydrate b 30.4 56 0.0012 24.6 2.9 19 129-147 92-110 (125)
73 PRK00446 cyaY frataxin-like pr 28.9 89 0.0019 24.3 3.8 33 119-155 48-83 (105)
74 PF01491 Frataxin_Cyay: Fratax 28.7 1.2E+02 0.0026 23.5 4.5 35 120-155 52-87 (109)
75 PF07495 Y_Y_Y: Y_Y_Y domain; 28.6 54 0.0012 22.0 2.3 22 132-153 34-58 (66)
76 KOG1407 WD40 repeat protein [F 27.7 1.5E+02 0.0033 27.5 5.6 42 136-178 141-183 (313)
77 KOG1263 Multicopper oxidases [ 26.7 40 0.00087 33.6 1.9 31 126-156 98-133 (563)
78 PF08308 PEGA: PEGA domain; I 25.4 2.2E+02 0.0047 19.5 5.0 42 96-148 5-46 (71)
79 PHA02659 endothelin precursor; 25.4 85 0.0018 23.0 2.9 20 188-207 48-67 (70)
80 PF10634 Iron_transport: Fe2+ 24.5 2.5E+02 0.0055 23.6 5.9 46 95-146 70-117 (151)
81 smart00230 CysPc Calpain-like 22.4 74 0.0016 28.9 2.6 25 134-158 98-125 (318)
82 PF07483 W_rich_C: Tryptophan- 22.2 3.1E+02 0.0067 21.7 5.8 47 105-152 30-77 (109)
83 PLN00050 expansin A; Provision 21.4 2.2E+02 0.0047 25.6 5.3 45 105-152 182-228 (247)
84 PF09423 PhoD: PhoD-like phosp 21.3 96 0.0021 29.2 3.2 22 126-147 60-85 (453)
85 COG1477 ApbE Membrane-associat 21.1 1.9E+02 0.0041 27.1 5.1 53 103-155 201-266 (337)
86 TIGR03421 FeS_CyaY iron donor 20.8 1.3E+02 0.0028 23.3 3.3 37 118-155 45-81 (102)
87 PF00648 Peptidase_C2: Calpain 20.5 84 0.0018 27.7 2.5 22 136-157 87-111 (298)
88 smart00606 CBD_IV Cellulose Bi 20.4 1.2E+02 0.0025 23.1 3.0 18 130-147 101-118 (129)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.94 E-value=1.8e-26 Score=169.89 Aligned_cols=79 Identities=52% Similarity=1.028 Sum_probs=75.1
Q ss_pred ceeEEEEEcCCCCeEEEEeecCCCccceeeeeeCCcEEEEEEcCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeEEEE
Q 028378 92 GIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILD 170 (210)
Q Consensus 92 ~vpv~F~w~~~g~~V~V~GSFdnW~~~ipM~rs~~~f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~P~~~D~~G~~NNvI~ 170 (210)
.++|+|+|..++++|+|+|||++|+..++|+|+++.|++++.||+|.|+|||+|||+|++||+++++.|++|+.||+|+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~~~~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~ 79 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSGKGFSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNVID 79 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECCCCcEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence 3789999999999999999999999779999987779999999999999999999999999999999999999999984
No 2
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.88 E-value=3.1e-22 Score=179.37 Aligned_cols=139 Identities=41% Similarity=0.697 Sum_probs=115.8
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCCCcccccCCC-CCCCCCCCCceeEEEEEcCCCCeEEEEeecCCC
Q 028378 37 LMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSS-GYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNW 115 (210)
Q Consensus 37 ~~~~~~p~sp~~~~~p~~f~pq~p~~pl~r~~~~~~~~~~~~~~~~-~~~~~~~~~~vpv~F~w~~~g~~V~V~GSFdnW 115 (210)
.++...+...+.-....+|.|+.+..++.|+.........|.+... ..........+||+|+|.++++.|+|+|+|+||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~pvvi~W~~gg~~v~v~gS~~nW 102 (289)
T KOG1616|consen 23 SNGSHKPGSERKIPSNSGFSPDDPDPPSTRDEKERIDEGSWSQSQTGEDNEKDREQGRPTVIRWSQGGKEVYVDGSFGNW 102 (289)
T ss_pred hcCCCCCCCccccccccccCCcCCCCCcCcccccccccccccccccccccccccccCCceEEEecCCCceEEEecccccc
Confidence 3334444444443344488999999999988777777777776542 234445577899999999999999999999999
Q ss_pred ccceeeeeeCCc---EEEEEEcCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeEEEEcCCCc
Q 028378 116 KTRIALQRSGKD---FTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQVNI 175 (210)
Q Consensus 116 ~~~ipM~rs~~~---f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~P~~~D~~G~~NNvI~V~d~v 175 (210)
+.+++|.+..+. |+++++|++|.|+|||+|||+|++|++.|++.|..|+.||+|.|.+..
T Consensus 103 k~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v~~~~ 165 (289)
T KOG1616|consen 103 KTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNLNNILEVQDPD 165 (289)
T ss_pred cccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCcccceEecCcc
Confidence 999999998765 999999999999999999999999999999999999999999999877
No 3
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.81 E-value=1.6e-19 Score=132.87 Aligned_cols=76 Identities=28% Similarity=0.645 Sum_probs=68.5
Q ss_pred eeEEEEEcC-CCCeEEEEeecCCCccceeeeeeC-CcEEEEEEcCCceEEEEEEEcCeee-cCCCCC-eeeCCCCCeeEE
Q 028378 93 IPTMITWSH-DGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKVLPSGVYQYRFLVDGLWK-YAPDLP-STQDDDGNVYNI 168 (210)
Q Consensus 93 vpv~F~w~~-~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l~Lp~G~YqYKFiVDG~W~-~Dp~~P-~~~D~~G~~NNv 168 (210)
++++|+|.. .+++|+|+|+|++|+ .++|+|.+ +.|++++.|++|.|+|||+|||.|. .||.++ +..|..|+.|||
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v 80 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREGDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNAV 80 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEECCCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccceE
Confidence 579999875 569999999999998 58999976 6899999999999999999999998 999998 578889999998
Q ss_pred E
Q 028378 169 L 169 (210)
Q Consensus 169 I 169 (210)
|
T Consensus 81 ~ 81 (82)
T cd02861 81 F 81 (82)
T ss_pred c
Confidence 7
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.32 E-value=1.4e-11 Score=91.51 Aligned_cols=75 Identities=24% Similarity=0.444 Sum_probs=61.2
Q ss_pred eEEEE-EcCCCCeEEEEeecCCCccceeeeeeC-CcEEEEE-EcCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeEEE
Q 028378 94 PTMIT-WSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMK-VLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNIL 169 (210)
Q Consensus 94 pv~F~-w~~~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l-~Lp~G~YqYKFiVDG~W~~Dp~~P~~~D~~G~~NNvI 169 (210)
.++|+ |.+.+++|.|.|+|++|.. .+|+|.+ +.|++++ .|.+|.|+|+|+|||.++.||..+...-..+...|++
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~~ 84 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDEAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSGV 84 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeECCCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeecccccceee
Confidence 47885 8899999999999998874 8899865 5899988 4788899999999999999999996654444444443
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.88 E-value=1.2e-08 Score=72.13 Aligned_cols=67 Identities=22% Similarity=0.364 Sum_probs=55.9
Q ss_pred eEEEE-EcCCCCeEEEEeecCCCccceeeeeeC-CcEEEEEEcCC-ceEEEEEEEcCeeecCCCCCeeeC
Q 028378 94 PTMIT-WSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKVLPS-GVYQYRFLVDGLWKYAPDLPSTQD 160 (210)
Q Consensus 94 pv~F~-w~~~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l~Lp~-G~YqYKFiVDG~W~~Dp~~P~~~D 160 (210)
.|+|+ |.+.+++|.|.++|++|...++|.+.. +.|++.+.+.. +.|.|||+|||.|..++.++...+
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~ 74 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADE 74 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhc
Confidence 47886 557889999999999966678998865 68999999887 999999999999999887754443
No 6
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.65 E-value=7.9e-08 Score=69.77 Aligned_cols=56 Identities=20% Similarity=0.459 Sum_probs=44.4
Q ss_pred eEEEE-EcCCCCeEEEEeecCC-Ccc-ceeeee--eCCcEEEEEE--cCCceEEEEEEEcCee
Q 028378 94 PTMIT-WSHDGCEVAVEGSWDN-WKT-RIALQR--SGKDFTIMKV--LPSGVYQYRFLVDGLW 149 (210)
Q Consensus 94 pv~F~-w~~~g~~V~V~GSFdn-W~~-~ipM~r--s~~~f~i~l~--Lp~G~YqYKFiVDG~W 149 (210)
-++|+ |.+.+++|.|.+.|++ |.. .++|++ .++.|++++. |++|.++|+|+||+..
T Consensus 12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 57785 8999999999999999 875 479994 3568999998 8888888888887553
No 7
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.59 E-value=3.1e-07 Score=70.54 Aligned_cols=65 Identities=20% Similarity=0.433 Sum_probs=49.5
Q ss_pred eEEEE-EcCCCCeEEEEeecCCCcc-ceeeeeeC-CcEEEEEEc--------CCc-eEEEEEEE-cCee--ecCCCCCee
Q 028378 94 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRSG-KDFTIMKVL--------PSG-VYQYRFLV-DGLW--KYAPDLPST 158 (210)
Q Consensus 94 pv~F~-w~~~g~~V~V~GSFdnW~~-~ipM~rs~-~~f~i~l~L--------p~G-~YqYKFiV-DG~W--~~Dp~~P~~ 158 (210)
-++|+ |.+.|++|+|+|+||+|+. ..+|.|.+ +.|++.+.. +.| .|.|++.. ||+| +.||-.-.+
T Consensus 6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~~~ 85 (99)
T cd02854 6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIKYV 85 (99)
T ss_pred eEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcceeEE
Confidence 36784 8999999999999999986 47899864 689998764 455 56666666 7885 567766544
No 8
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.87 E-value=5.7e-05 Score=56.69 Aligned_cols=53 Identities=23% Similarity=0.516 Sum_probs=44.1
Q ss_pred eeEEEEEc---CCCCeEEEEeecC---CCcc--ceeeeeeC-----CcEEEEEEcCCc-eEEEEEEE
Q 028378 93 IPTMITWS---HDGCEVAVEGSWD---NWKT--RIALQRSG-----KDFTIMKVLPSG-VYQYRFLV 145 (210)
Q Consensus 93 vpv~F~w~---~~g~~V~V~GSFd---nW~~--~ipM~rs~-----~~f~i~l~Lp~G-~YqYKFiV 145 (210)
+.|+|... ..++.|+|+||.. +|+. .++|+... ..|++.+.||.+ .++|||+|
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 67888775 4789999999997 7997 57898753 479999999988 79999999
No 9
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.85 E-value=0.00019 Score=53.61 Aligned_cols=65 Identities=23% Similarity=0.491 Sum_probs=44.3
Q ss_pred EEEE-EcCCCCeEEEEeecCCCcc-ceeeeee--CCcEEEEEE-cCCc-eEEEEEEEc-Ce--eecCCCCCeee
Q 028378 95 TMIT-WSHDGCEVAVEGSWDNWKT-RIALQRS--GKDFTIMKV-LPSG-VYQYRFLVD-GL--WKYAPDLPSTQ 159 (210)
Q Consensus 95 v~F~-w~~~g~~V~V~GSFdnW~~-~ipM~rs--~~~f~i~l~-Lp~G-~YqYKFiVD-G~--W~~Dp~~P~~~ 159 (210)
++|+ |.+.+++|.|.++|++|.. ..+|++. .+.|.+.+. ++.| .|+|++..+ |. .+.||....+.
T Consensus 23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~ 96 (106)
T cd02855 23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSE 96 (106)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeE
Confidence 5674 8899999999999999964 4689874 457998775 5566 455554444 33 35566554333
No 10
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.81 E-value=0.0001 Score=55.62 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=48.4
Q ss_pred EEE-EEcCCCCeEEEEeecCCCc-----cceeeeee-CCcEEEEEE-cCCceEEEEEEEcCe-----eecCCCCCeee
Q 028378 95 TMI-TWSHDGCEVAVEGSWDNWK-----TRIALQRS-GKDFTIMKV-LPSGVYQYRFLVDGL-----WKYAPDLPSTQ 159 (210)
Q Consensus 95 v~F-~w~~~g~~V~V~GSFdnW~-----~~ipM~rs-~~~f~i~l~-Lp~G~YqYKFiVDG~-----W~~Dp~~P~~~ 159 (210)
++| .|.+.+++|.|.. |++|. .+++|++. ++.|++.+. +.+|.+ |+|.|+|. .+.||-...+.
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~~ 85 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKALS 85 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeEe
Confidence 678 5899999999998 88886 45789884 568999886 455654 88888775 78888776554
No 11
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.78 E-value=8.5e-05 Score=55.15 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=41.9
Q ss_pred eeEEEEEc---CCCCeEEEEee---cCCCccc--eeeeeeC-CcEEEEEEcCCc-eEEEEEEE
Q 028378 93 IPTMITWS---HDGCEVAVEGS---WDNWKTR--IALQRSG-KDFTIMKVLPSG-VYQYRFLV 145 (210)
Q Consensus 93 vpv~F~w~---~~g~~V~V~GS---FdnW~~~--ipM~rs~-~~f~i~l~Lp~G-~YqYKFiV 145 (210)
|+|+|... ..|++|+|+|+ +.+|+.. ++|.... +.|++.+.||.+ .++|||++
T Consensus 1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEEE
Confidence 45677654 36899999995 7899863 5887654 579999999987 79999997
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.0001 Score=73.07 Aligned_cols=77 Identities=16% Similarity=0.395 Sum_probs=54.8
Q ss_pred eEEE-EEcCCCCeEEEEeecCCCccc-eeeeee--CCcEEEEEE-cCCceEEEEEEEcCe-----eecCCCCCeeeCCCC
Q 028378 94 PTMI-TWSHDGCEVAVEGSWDNWKTR-IALQRS--GKDFTIMKV-LPSGVYQYRFLVDGL-----WKYAPDLPSTQDDDG 163 (210)
Q Consensus 94 pv~F-~w~~~g~~V~V~GSFdnW~~~-ipM~rs--~~~f~i~l~-Lp~G~YqYKFiVDG~-----W~~Dp~~P~~~D~~G 163 (210)
.|.| .|.+.++.|.|.|+||+|+.. .+|... .+.|++++. +++| ++|||.|++. ++.||-.-.....-.
T Consensus 37 ~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~~~p~ 115 (628)
T COG0296 37 GVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQEVGPH 115 (628)
T ss_pred ceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccCCCCC
Confidence 6788 599999999999999999972 344322 257999998 9999 9999999644 367776554444344
Q ss_pred CeeEEEEc
Q 028378 164 NVYNILDL 171 (210)
Q Consensus 164 ~~NNvI~V 171 (210)
+..-|.+.
T Consensus 116 ~aS~v~~~ 123 (628)
T COG0296 116 TASQVVDL 123 (628)
T ss_pred CcceecCC
Confidence 44444443
No 13
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.55 E-value=0.0012 Score=49.58 Aligned_cols=53 Identities=21% Similarity=0.461 Sum_probs=44.4
Q ss_pred eeEEEEEc---CCCCeEEEEeec---CCCccceeeeeeCCcEEEEEEcCCc-eEEEEEEE
Q 028378 93 IPTMITWS---HDGCEVAVEGSW---DNWKTRIALQRSGKDFTIMKVLPSG-VYQYRFLV 145 (210)
Q Consensus 93 vpv~F~w~---~~g~~V~V~GSF---dnW~~~ipM~rs~~~f~i~l~Lp~G-~YqYKFiV 145 (210)
+.++|+.. ..|+.++|+|+- .+|+...+|.-..+.|++.+.||.+ .++|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWTENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccCCCCEEEEEEeCCCCcEEEEEEE
Confidence 56778766 368899999987 5899877887766789999999987 79999999
No 14
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.54 E-value=0.00047 Score=52.42 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=40.4
Q ss_pred EEE-EEcCCCCeEEEEeecCCCc--cceeeeeeC-CcEEEEEE-cCCceEEEEEEEcCe
Q 028378 95 TMI-TWSHDGCEVAVEGSWDNWK--TRIALQRSG-KDFTIMKV-LPSGVYQYRFLVDGL 148 (210)
Q Consensus 95 v~F-~w~~~g~~V~V~GSFdnW~--~~ipM~rs~-~~f~i~l~-Lp~G~YqYKFiVDG~ 148 (210)
++| .|.+.+++|.|.. |+++. ..++|++.. +.|.+.+. +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCCC-EEEEEECCc
Confidence 577 5899999999998 66664 357898764 68999884 55665 799999993
No 15
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.48 E-value=0.00034 Score=68.77 Aligned_cols=65 Identities=23% Similarity=0.395 Sum_probs=48.2
Q ss_pred eEEEE-EcCCCCeEEEEeecCCCcc-ceeeeee-CCcEEEEEE-cCCc-eEEEEEEE-cCee--ecCCCCCee
Q 028378 94 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRS-GKDFTIMKV-LPSG-VYQYRFLV-DGLW--KYAPDLPST 158 (210)
Q Consensus 94 pv~F~-w~~~g~~V~V~GSFdnW~~-~ipM~rs-~~~f~i~l~-Lp~G-~YqYKFiV-DG~W--~~Dp~~P~~ 158 (210)
-|+|+ |.+.|++|+|+|+|++|.. ..+|+|. .+.|.+.+. +.+| .|+|++.+ ||.| +.||....+
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~ 111 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYF 111 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEE
Confidence 57884 8899999999999999986 3689885 468999887 4455 67777655 5765 456655533
No 16
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.46 E-value=0.0016 Score=49.94 Aligned_cols=54 Identities=28% Similarity=0.492 Sum_probs=42.9
Q ss_pred ceeEEEEEc-----CCCCeEEEEeec---CCCccce-----eeeee-CCcEEEEEEcCCc-eEEEEEEE
Q 028378 92 GIPTMITWS-----HDGCEVAVEGSW---DNWKTRI-----ALQRS-GKDFTIMKVLPSG-VYQYRFLV 145 (210)
Q Consensus 92 ~vpv~F~w~-----~~g~~V~V~GSF---dnW~~~i-----pM~rs-~~~f~i~l~Lp~G-~YqYKFiV 145 (210)
.|||+|+.. ..|++|+|+|+- -+|+... +|... ...|++.+.||.| ..+|||++
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence 389999986 257899999987 4898632 56543 3479999999998 79999999
No 17
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.44 E-value=0.00073 Score=68.10 Aligned_cols=64 Identities=22% Similarity=0.483 Sum_probs=48.8
Q ss_pred eEEE-EEcCCCCeEEEEeecCCCcc-ceeeeee-CCcEEEEEE-cCCceEEEEEEE---cCeee--cCCCCCee
Q 028378 94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQRS-GKDFTIMKV-LPSGVYQYRFLV---DGLWK--YAPDLPST 158 (210)
Q Consensus 94 pv~F-~w~~~g~~V~V~GSFdnW~~-~ipM~rs-~~~f~i~l~-Lp~G~YqYKFiV---DG~W~--~Dp~~P~~ 158 (210)
-|+| +|.+.|++|.|+|+||+|+. +.+|++. .+.|++.+. +.+| ..|||.| ||.+. .||-....
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~~ 211 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQT 211 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceEe
Confidence 4688 59999999999999999986 4689864 568999885 6677 3566666 78754 68866543
No 18
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.40 E-value=0.0012 Score=50.16 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=41.9
Q ss_pred ceeEEEEEc----CCCCeEEEEe---ecCCCccce-eeee--e--CCcEEEEEEcCCc-eEEEEEEE
Q 028378 92 GIPTMITWS----HDGCEVAVEG---SWDNWKTRI-ALQR--S--GKDFTIMKVLPSG-VYQYRFLV 145 (210)
Q Consensus 92 ~vpv~F~w~----~~g~~V~V~G---SFdnW~~~i-pM~r--s--~~~f~i~l~Lp~G-~YqYKFiV 145 (210)
.|+|+|... ..|++|+|+| ++.+|+... +|.. . ...|++.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 478999874 3688999999 667998632 3432 1 2579999999998 79999999
No 19
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.37 E-value=0.0011 Score=52.06 Aligned_cols=52 Identities=31% Similarity=0.523 Sum_probs=41.5
Q ss_pred EEEEEc----CCCCeEEEEee---cCCCcc--ceeeeee--C-CcEEEEEEcCCc-eEEEEEEEc
Q 028378 95 TMITWS----HDGCEVAVEGS---WDNWKT--RIALQRS--G-KDFTIMKVLPSG-VYQYRFLVD 146 (210)
Q Consensus 95 v~F~w~----~~g~~V~V~GS---FdnW~~--~ipM~rs--~-~~f~i~l~Lp~G-~YqYKFiVD 146 (210)
++|+.. ..++.|+|+|+ +.+|+. .++|.+. . +.|++.+.||.+ .++|||++.
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 455543 36889999999 889985 4688875 3 579999999988 899999993
No 20
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.33 E-value=0.00064 Score=68.76 Aligned_cols=62 Identities=15% Similarity=0.299 Sum_probs=46.1
Q ss_pred eEEE-EEcCCCCeEEEEeecCCCcc-ceeeeeeC-CcEEEEEEc-------CCceEEEEEEEc---Ce--eecCCCCC
Q 028378 94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQRSG-KDFTIMKVL-------PSGVYQYRFLVD---GL--WKYAPDLP 156 (210)
Q Consensus 94 pv~F-~w~~~g~~V~V~GSFdnW~~-~ipM~rs~-~~f~i~l~L-------p~G~YqYKFiVD---G~--W~~Dp~~P 156 (210)
-|+| .|.+.|++|+|+|+||+|+. ..+|+|.+ +.|++.|.- +.| ..|||.|. |. .+.||-..
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~ 191 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNEFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK 191 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeCCCCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence 5678 59999999999999999986 36899865 689998863 344 36777773 54 45676544
No 21
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=97.29 E-value=0.0027 Score=48.30 Aligned_cols=55 Identities=25% Similarity=0.521 Sum_probs=43.3
Q ss_pred CceeEEEEEc---CCCCeEEEEeec---CCCcc--ceeeeee-----CCcEEEEEEcCCc-eEEEEEEE
Q 028378 91 VGIPTMITWS---HDGCEVAVEGSW---DNWKT--RIALQRS-----GKDFTIMKVLPSG-VYQYRFLV 145 (210)
Q Consensus 91 ~~vpv~F~w~---~~g~~V~V~GSF---dnW~~--~ipM~rs-----~~~f~i~l~Lp~G-~YqYKFiV 145 (210)
..++|+|... ..|+.|+|+|+- -+|+. .++|... +..|++.+.||.+ .++|||+|
T Consensus 5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 4578888765 468999999986 47996 3678653 3579999999987 69999997
No 22
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.21 E-value=0.0008 Score=71.12 Aligned_cols=62 Identities=21% Similarity=0.488 Sum_probs=47.4
Q ss_pred eEEE-EEcCCCCeEEEEeecCCCccc-eeeeee--CCcEEEEEE-cCCceEEEEEEEc---Cee--ecCCCCC
Q 028378 94 PTMI-TWSHDGCEVAVEGSWDNWKTR-IALQRS--GKDFTIMKV-LPSGVYQYRFLVD---GLW--KYAPDLP 156 (210)
Q Consensus 94 pv~F-~w~~~g~~V~V~GSFdnW~~~-ipM~rs--~~~f~i~l~-Lp~G~YqYKFiVD---G~W--~~Dp~~P 156 (210)
-|.| +|.+.+++|.|+|+||+|..+ .+|.+. .+.|++.+. +.+|. .|||.|+ |.| +.||-.-
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA~ 710 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLAF 710 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCcccc
Confidence 5678 599999999999999999863 689873 468998875 77885 6888884 554 4566543
No 23
>PRK05402 glycogen branching enzyme; Provisional
Probab=97.13 E-value=0.0023 Score=64.07 Aligned_cols=64 Identities=20% Similarity=0.446 Sum_probs=47.3
Q ss_pred eEEEE-EcCCCCeEEEEeecCCCcc-ceeeeee-C-CcEEEEEE-cCCc-eEEEEEEEc-Cee--ecCCCCCe
Q 028378 94 PTMIT-WSHDGCEVAVEGSWDNWKT-RIALQRS-G-KDFTIMKV-LPSG-VYQYRFLVD-GLW--KYAPDLPS 157 (210)
Q Consensus 94 pv~F~-w~~~g~~V~V~GSFdnW~~-~ipM~rs-~-~~f~i~l~-Lp~G-~YqYKFiVD-G~W--~~Dp~~P~ 157 (210)
-|+|+ |.+.|++|.|+|+|++|.. ..+|+|. . +.|.+.+. +++| .|+|++..+ |.| +.||-.-.
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~ 204 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFA 204 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEE
Confidence 47885 8899999999999999986 3689886 3 68998875 6666 677777665 454 45554443
No 24
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.12 E-value=0.0011 Score=65.71 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=52.2
Q ss_pred eEEE-EEcCCCCeEEEEeecCCCccc-eeeeeeC-CcEEEEEEc-CCceEEEEEEEcC---ee--ecCCCCCeeeCCCCC
Q 028378 94 PTMI-TWSHDGCEVAVEGSWDNWKTR-IALQRSG-KDFTIMKVL-PSGVYQYRFLVDG---LW--KYAPDLPSTQDDDGN 164 (210)
Q Consensus 94 pv~F-~w~~~g~~V~V~GSFdnW~~~-ipM~rs~-~~f~i~l~L-p~G~YqYKFiVDG---~W--~~Dp~~P~~~D~~G~ 164 (210)
-|+| .|.+.+++|.|+|+||+|... .+|+|.+ +.|.+.+.. ..| ..|||.|++ .+ +.||-...+.. ...
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~~~-~~~ 116 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFFEV-RPN 116 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEEec-CCC
Confidence 4788 589999999999999999863 6898754 689988763 455 468888854 43 67776653322 233
Q ss_pred eeEEEE
Q 028378 165 VYNILD 170 (210)
Q Consensus 165 ~NNvI~ 170 (210)
...+|.
T Consensus 117 ~~svv~ 122 (639)
T PRK14706 117 TASIIW 122 (639)
T ss_pred CceEEC
Confidence 445543
No 25
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.05 E-value=0.0023 Score=49.69 Aligned_cols=54 Identities=24% Similarity=0.387 Sum_probs=41.9
Q ss_pred EEE-EEcCCCCeEEEEeecCCCc---c--ceeeeee----CCcEEEEEE-cCCceEEEEEEEcCeee
Q 028378 95 TMI-TWSHDGCEVAVEGSWDNWK---T--RIALQRS----GKDFTIMKV-LPSGVYQYRFLVDGLWK 150 (210)
Q Consensus 95 v~F-~w~~~g~~V~V~GSFdnW~---~--~ipM~rs----~~~f~i~l~-Lp~G~YqYKFiVDG~W~ 150 (210)
++| .|.+.+++|.|.. |++|. . +++|++. ++.|.+.+. +.+|. .|+|.|+|.|.
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~ 73 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFE 73 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCC
Confidence 678 5899999999999 88886 2 4678654 478998875 66776 79999998643
No 26
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.99 E-value=0.003 Score=47.30 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=41.1
Q ss_pred eeEEEEEc----CCCCeEEEEeec---CCCccceeeeeeC-CcEEEEEEcCCc-eEEEEEEE
Q 028378 93 IPTMITWS----HDGCEVAVEGSW---DNWKTRIALQRSG-KDFTIMKVLPSG-VYQYRFLV 145 (210)
Q Consensus 93 vpv~F~w~----~~g~~V~V~GSF---dnW~~~ipM~rs~-~~f~i~l~Lp~G-~YqYKFiV 145 (210)
|+|+|+.. .+++.|+|+|+- -+|+...+|.... ..|++.+.||.+ .++|||++
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 45777654 256778999976 4788778887644 479999999988 59999998
No 27
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.90 E-value=0.004 Score=60.51 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=48.0
Q ss_pred EEE-EEcCCCCeEEEEeecCCCccceeeeeeC-CcEEEEEE-cCCceEEEEEEEcC-eeecCCCCCeee
Q 028378 95 TMI-TWSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKV-LPSGVYQYRFLVDG-LWKYAPDLPSTQ 159 (210)
Q Consensus 95 v~F-~w~~~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l~-Lp~G~YqYKFiVDG-~W~~Dp~~P~~~ 159 (210)
|+| .|.+.+++|.|... ++ .++|+|.+ +.|++++. +.+| +.|+|.||| ..+.||......
T Consensus 1 v~FrlwAP~A~~V~L~l~---~~-~~~m~k~~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~ 64 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---GA-LHAMQRLGDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP 64 (542)
T ss_pred CEEEEECCCCCEEEEEeC---CC-EEeCeECCCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence 467 48999999999973 33 57999865 58999886 6777 789999999 688999887543
No 28
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.84 E-value=0.008 Score=45.61 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=41.1
Q ss_pred ceeEEEEEc----CCCCeEEEEeec---CCCccc--eeee-e----eCCcEEEEEEcCCc-eEEEEEEE
Q 028378 92 GIPTMITWS----HDGCEVAVEGSW---DNWKTR--IALQ-R----SGKDFTIMKVLPSG-VYQYRFLV 145 (210)
Q Consensus 92 ~vpv~F~w~----~~g~~V~V~GSF---dnW~~~--ipM~-r----s~~~f~i~l~Lp~G-~YqYKFiV 145 (210)
.|+++|... ..|++|+|+|+- -+|+.. +.|. . ....|++.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 478888864 368999999987 489964 3232 2 22479999999988 79999999
No 29
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.84 E-value=0.012 Score=44.64 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=39.4
Q ss_pred EEEEEc----CCCCeEEEEeec---CCCcc--ceeeeeeC-CcEEEEEEcCCc--eEEEEEEE
Q 028378 95 TMITWS----HDGCEVAVEGSW---DNWKT--RIALQRSG-KDFTIMKVLPSG--VYQYRFLV 145 (210)
Q Consensus 95 v~F~w~----~~g~~V~V~GSF---dnW~~--~ipM~rs~-~~f~i~l~Lp~G--~YqYKFiV 145 (210)
|+|+.. ..++.|+|+|+- .+|+. .++|+... ..|++.+.||++ .++|||++
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEE
Confidence 455544 368899999986 58996 46887654 479999999875 69999998
No 30
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.75 E-value=0.0054 Score=45.02 Aligned_cols=60 Identities=25% Similarity=0.296 Sum_probs=44.0
Q ss_pred EEEE-EcCCCCeEEEEeecCCCccceeeeeeC-CcEEEEEEcCCceEEEEEEEc-CeeecCCCCCee
Q 028378 95 TMIT-WSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKVLPSGVYQYRFLVD-GLWKYAPDLPST 158 (210)
Q Consensus 95 v~F~-w~~~g~~V~V~GSFdnW~~~ipM~rs~-~~f~i~l~Lp~G~YqYKFiVD-G~W~~Dp~~P~~ 158 (210)
++|+ |.+.+++|.|.... |. .++|+|.. +.|++.+..-+|. .|+|.|+ +..+.||.....
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~ 72 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDGDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ 72 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccCCCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence 6784 88999999999643 54 47898754 6899987633665 4777776 558899987753
No 31
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.74 E-value=0.0062 Score=46.29 Aligned_cols=45 Identities=22% Similarity=0.455 Sum_probs=37.1
Q ss_pred CCCCeEEEEee---cCCCccc--eeeeeeC-CcEEEEEEcCCc-eEEEEEEE
Q 028378 101 HDGCEVAVEGS---WDNWKTR--IALQRSG-KDFTIMKVLPSG-VYQYRFLV 145 (210)
Q Consensus 101 ~~g~~V~V~GS---FdnW~~~--ipM~rs~-~~f~i~l~Lp~G-~YqYKFiV 145 (210)
..|..|+|+|+ ..+|+.. ++|...+ ..|++.+.||.+ .++|||+|
T Consensus 11 ~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 11 QFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEE
Confidence 46899999999 5689963 5787654 479999999987 69999998
No 32
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.73 E-value=0.0078 Score=59.27 Aligned_cols=64 Identities=22% Similarity=0.422 Sum_probs=47.8
Q ss_pred eEEE-EEcCCCCeEEEEeecCCCccc-eeeeee--CCcEEEEEE-cCCceEEEEEEEc---Ce--eecCCCCCee
Q 028378 94 PTMI-TWSHDGCEVAVEGSWDNWKTR-IALQRS--GKDFTIMKV-LPSGVYQYRFLVD---GL--WKYAPDLPST 158 (210)
Q Consensus 94 pv~F-~w~~~g~~V~V~GSFdnW~~~-ipM~rs--~~~f~i~l~-Lp~G~YqYKFiVD---G~--W~~Dp~~P~~ 158 (210)
-|+| .|.+.+++|.|.|+|++|... .+|++. .+.|++.+. +.+|. .|||.|+ |. .+.||-.-..
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~ 102 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYA 102 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeee
Confidence 4678 499999999999999999853 589875 368998875 35564 5777774 55 4778866533
No 33
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.64 E-value=0.0083 Score=44.19 Aligned_cols=45 Identities=33% Similarity=0.547 Sum_probs=37.5
Q ss_pred CCCCeEEEEeecC---CCcc--ceeeeeeC--CcEEEEEEcCC--c-eEEEEEEE
Q 028378 101 HDGCEVAVEGSWD---NWKT--RIALQRSG--KDFTIMKVLPS--G-VYQYRFLV 145 (210)
Q Consensus 101 ~~g~~V~V~GSFd---nW~~--~ipM~rs~--~~f~i~l~Lp~--G-~YqYKFiV 145 (210)
..|..|+|+|+.. +|+. .++|...+ +.|++.+.|+. + .++|||++
T Consensus 11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 11 QFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 5789999999984 7985 46888654 57999999998 6 79999998
No 34
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.52 E-value=0.01 Score=45.09 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=40.6
Q ss_pred eeEEEEEc----CCCCeEEEEeecC---CCcc--ceeeeeeC-CcEEEEEEcCCc-eEEEEEEE
Q 028378 93 IPTMITWS----HDGCEVAVEGSWD---NWKT--RIALQRSG-KDFTIMKVLPSG-VYQYRFLV 145 (210)
Q Consensus 93 vpv~F~w~----~~g~~V~V~GSFd---nW~~--~ipM~rs~-~~f~i~l~Lp~G-~YqYKFiV 145 (210)
|+|+|.-. ..++.|+|+|+-. +|+. .++|.... ..|.+.+.||.+ ..+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 45666632 3688999999875 8996 35676543 469999999988 79999988
No 35
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.33 E-value=0.011 Score=59.20 Aligned_cols=61 Identities=16% Similarity=-0.009 Sum_probs=44.2
Q ss_pred eEEE-EEcCCCCeEEEEeecCCCccceeeeee--CCcEEEEEEcCCc-eEEEEEEEcCe--eecCCCC
Q 028378 94 PTMI-TWSHDGCEVAVEGSWDNWKTRIALQRS--GKDFTIMKVLPSG-VYQYRFLVDGL--WKYAPDL 155 (210)
Q Consensus 94 pv~F-~w~~~g~~V~V~GSFdnW~~~ipM~rs--~~~f~i~l~Lp~G-~YqYKFiVDG~--W~~Dp~~ 155 (210)
=++| +|.+.|++|.|+|+||+ ....+|+|. .+.|++.+.+..| .|.|+..-||+ ...||-.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~~G~w~~~ip~~~g~~YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLHPRGLFAGVLPRKGPFDYRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEcCCCceEEEEecCCCCCCeEEEEEeCCceeEeccccc
Confidence 4677 69999999999999997 345789974 4689998887777 55544332786 4556544
No 36
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=95.78 E-value=0.13 Score=40.92 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=53.9
Q ss_pred eeEEEEEc----CCCCeEEEEeecCCCcc-----ceeeeeeCC--cEEEEEEcCCc-eEEEEEEEcCe------------
Q 028378 93 IPTMITWS----HDGCEVAVEGSWDNWKT-----RIALQRSGK--DFTIMKVLPSG-VYQYRFLVDGL------------ 148 (210)
Q Consensus 93 vpv~F~w~----~~g~~V~V~GSFdnW~~-----~ipM~rs~~--~f~i~l~Lp~G-~YqYKFiVDG~------------ 148 (210)
+-|||.|. .....|.|-++.++.+. ...|+|-++ .|..++.|+.+ +-.|+|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r~ 81 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWRA 81 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEEEEEEEecCcccchhHHHHHHH
Confidence 35899999 45578999999999864 357999765 69999999988 88999997533
Q ss_pred ----eecCCCCCee-eCC---CCCeeEEEEcCC
Q 028378 149 ----WKYAPDLPST-QDD---DGNVYNILDLQV 173 (210)
Q Consensus 149 ----W~~Dp~~P~~-~D~---~G~~NNvI~V~d 173 (210)
-+.||-||.. ... .|...+++++.+
T Consensus 82 ~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~ 114 (122)
T PF11806_consen 82 ILAQAQADPLNPRPWPNGAQDRGNAASVLELPD 114 (122)
T ss_dssp HGGG-B--TTSSSEEE-TT---SSEEEEEE-TT
T ss_pred HHhccCCCCCCCCCCCCCccccccccCceeCCC
Confidence 3568989854 333 489999999854
No 37
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.54 E-value=0.096 Score=39.24 Aligned_cols=54 Identities=15% Similarity=0.394 Sum_probs=35.2
Q ss_pred eEEEEEcC------CCCeEEEEeecCCCccc--eeeeeeC-----CcEEEEEEcCCceEEEEEEE-cC
Q 028378 94 PTMITWSH------DGCEVAVEGSWDNWKTR--IALQRSG-----KDFTIMKVLPSGVYQYRFLV-DG 147 (210)
Q Consensus 94 pv~F~w~~------~g~~V~V~GSFdnW~~~--ipM~rs~-----~~f~i~l~Lp~G~YqYKFiV-DG 147 (210)
.|+|.|.. ++.+|.|.+.|++|+.. +.|++.. +-|+++|.+|..-|+..|+. ||
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg 70 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDG 70 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-S
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCC
Confidence 45666632 47899999999999963 6788754 56899999999988888887 54
No 38
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.47 E-value=0.046 Score=53.70 Aligned_cols=63 Identities=16% Similarity=0.299 Sum_probs=45.3
Q ss_pred EEE-EEcCCCCeEEEEeecCCCcc-----ceeeeee-CCcEEEEEE-cCCc-eEEEEEEEcCe--eecCCCCCee
Q 028378 95 TMI-TWSHDGCEVAVEGSWDNWKT-----RIALQRS-GKDFTIMKV-LPSG-VYQYRFLVDGL--WKYAPDLPST 158 (210)
Q Consensus 95 v~F-~w~~~g~~V~V~GSFdnW~~-----~ipM~rs-~~~f~i~l~-Lp~G-~YqYKFiVDG~--W~~Dp~~P~~ 158 (210)
|+| .|.+.+++|.|.+ |++|.. .++|.+. ++.|++.+. +..| .|.|++..+|. ++.||-...+
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~ 94 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAV 94 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCccee
Confidence 788 5899999999997 888853 4688875 468999886 4566 45555444565 5889877543
No 39
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.19 E-value=0.22 Score=37.58 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=35.2
Q ss_pred CCCCeEEEEeec---CCCcc--ceeeeee--C--CcEEEEEEcCCc-eEEEEEEE
Q 028378 101 HDGCEVAVEGSW---DNWKT--RIALQRS--G--KDFTIMKVLPSG-VYQYRFLV 145 (210)
Q Consensus 101 ~~g~~V~V~GSF---dnW~~--~ipM~rs--~--~~f~i~l~Lp~G-~YqYKFiV 145 (210)
..|++|+|+|+- -+|+. .++|... + ..|++.+.++.+ .++|||+|
T Consensus 11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 11 QWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred cCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 468999999987 47975 3678542 2 269999999887 69999999
No 40
>PLN02960 alpha-amylase
Probab=94.40 E-value=0.036 Score=57.21 Aligned_cols=53 Identities=17% Similarity=0.389 Sum_probs=39.3
Q ss_pred eEEE-EEcCCCCeEEEEeecCCCccc-eeee-----eeC-CcEEEEEE--cCCce-------EEEEEEEc
Q 028378 94 PTMI-TWSHDGCEVAVEGSWDNWKTR-IALQ-----RSG-KDFTIMKV--LPSGV-------YQYRFLVD 146 (210)
Q Consensus 94 pv~F-~w~~~g~~V~V~GSFdnW~~~-ipM~-----rs~-~~f~i~l~--Lp~G~-------YqYKFiVD 146 (210)
-|.| .|.++|+.++|+|+||||+.+ ..|. |++ +.|.|+|+ |.+|+ -+|-|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 3455 799999999999999999975 4554 333 57999884 77773 35777765
No 41
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=94.31 E-value=0.25 Score=39.06 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=37.3
Q ss_pred EEcCCCCeEEEEeec---CCCccc--eeeeee-------C-CcEEEEEEcCCc----eEEEEEEE
Q 028378 98 TWSHDGCEVAVEGSW---DNWKTR--IALQRS-------G-KDFTIMKVLPSG----VYQYRFLV 145 (210)
Q Consensus 98 ~w~~~g~~V~V~GSF---dnW~~~--ipM~rs-------~-~~f~i~l~Lp~G----~YqYKFiV 145 (210)
+..+.+.+|+|+|+- -+|+.. ++|... . ..|.+.+.|+.+ .++|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 455788999999975 579963 567643 2 359999999985 69999998
No 42
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=93.82 E-value=0.33 Score=45.82 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=59.6
Q ss_pred CCceeEEEEEcC-CC-------CeEEEE--eecC--CCccceeeeeeCC--cEEEEEEcCCc-eEEEEEEEc---C----
Q 028378 90 GVGIPTMITWSH-DG-------CEVAVE--GSWD--NWKTRIALQRSGK--DFTIMKVLPSG-VYQYRFLVD---G---- 147 (210)
Q Consensus 90 ~~~vpv~F~w~~-~g-------~~V~V~--GSFd--nW~~~ipM~rs~~--~f~i~l~Lp~G-~YqYKFiVD---G---- 147 (210)
+..+-|||-|.. .+ +.|+|. |.-| .+.....|+|-++ .|..++.||.. +-.|+|+++ .
T Consensus 36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~~ 115 (411)
T PRK10439 36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAGTDVWQWSTELSANWRGSYCFIPTERDDIFSA 115 (411)
T ss_pred CCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCCCceEEEEEEECcccEEEEEEEeccccccccc
Confidence 445899999995 33 258873 2222 2333357999765 69999999998 899999992 1
Q ss_pred ---------------------eeecCCCCCee-eCCCCCeeEEEEcCCCc
Q 028378 148 ---------------------LWKYAPDLPST-QDDDGNVYNILDLQVNI 175 (210)
Q Consensus 148 ---------------------~W~~Dp~~P~~-~D~~G~~NNvI~V~d~v 175 (210)
.-+.||.++.. .+..|+..|+|++.+..
T Consensus 116 ~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a~ 165 (411)
T PRK10439 116 FAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQAP 165 (411)
T ss_pred cccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCCC
Confidence 11479999854 45556667999987654
No 43
>PLN02950 4-alpha-glucanotransferase
Probab=92.97 E-value=0.75 Score=47.90 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=50.5
Q ss_pred CCCCceeEEEEEc----CCCCeEEEEeec---CCCccc--eeeeee-CCcEEEEEEcCCc--eEEEEEEE---cCe--ee
Q 028378 88 GDGVGIPTMITWS----HDGCEVAVEGSW---DNWKTR--IALQRS-GKDFTIMKVLPSG--VYQYRFLV---DGL--WK 150 (210)
Q Consensus 88 ~~~~~vpv~F~w~----~~g~~V~V~GSF---dnW~~~--ipM~rs-~~~f~i~l~Lp~G--~YqYKFiV---DG~--W~ 150 (210)
+....++|+|+.. ..|.+|+|+|+- -+|+.. ++|... ...|.+.+.|+.+ ..+|||++ +|. |-
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE 227 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLE 227 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEe
Confidence 3455688899864 358999999986 479963 567643 3579999999987 59999998 344 65
Q ss_pred cCCCCCe
Q 028378 151 YAPDLPS 157 (210)
Q Consensus 151 ~Dp~~P~ 157 (210)
..++.-.
T Consensus 228 ~g~NR~~ 234 (909)
T PLN02950 228 LGVNREL 234 (909)
T ss_pred eCCCcee
Confidence 5555443
No 44
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=92.94 E-value=0.32 Score=48.96 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=39.0
Q ss_pred EEE-EEcCCCCeEEEEeecCCCcc----ceeeeee-CCcEEEEEE-cCCceEEEEEEEcCe
Q 028378 95 TMI-TWSHDGCEVAVEGSWDNWKT----RIALQRS-GKDFTIMKV-LPSGVYQYRFLVDGL 148 (210)
Q Consensus 95 v~F-~w~~~g~~V~V~GSFdnW~~----~ipM~rs-~~~f~i~l~-Lp~G~YqYKFiVDG~ 148 (210)
|+| .|++.|++|.|. -|+++.. +++|.+. ++.|.+.+. +..|. .|+|.|+|.
T Consensus 16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~-~Y~yrv~g~ 74 (688)
T TIGR02100 16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPGQ-LYGYRVHGP 74 (688)
T ss_pred EEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCCC-EEEEEEeee
Confidence 678 588999999986 5665542 4678764 568999885 66776 499999884
No 45
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=92.58 E-value=0.64 Score=49.38 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=46.3
Q ss_pred EEE-EEcCCCCeEEEEe-ecCCCcc---ceeeeeeC-CcEEEEEE-cCCc-----eEEEEEEEcC----eeecCCCCCee
Q 028378 95 TMI-TWSHDGCEVAVEG-SWDNWKT---RIALQRSG-KDFTIMKV-LPSG-----VYQYRFLVDG----LWKYAPDLPST 158 (210)
Q Consensus 95 v~F-~w~~~g~~V~V~G-SFdnW~~---~ipM~rs~-~~f~i~l~-Lp~G-----~YqYKFiVDG----~W~~Dp~~P~~ 158 (210)
++| .|.+.+++|.|.. ++++|.. .++|.+.. ++|++.+. +.+| -+.|+|.|++ +.+.||....+
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~al 408 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAKSL 408 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhheEE
Confidence 678 4899999999998 4556653 57898754 68999886 4432 3688888875 46788866543
No 46
>PLN02950 4-alpha-glucanotransferase
Probab=92.10 E-value=1.1 Score=46.58 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=41.9
Q ss_pred CCceeEEEEEc---CCCCeEEEEeec---CCCcc--ceeeeeeC----CcEEEEEEcCCc-eEEEEEEE
Q 028378 90 GVGIPTMITWS---HDGCEVAVEGSW---DNWKT--RIALQRSG----KDFTIMKVLPSG-VYQYRFLV 145 (210)
Q Consensus 90 ~~~vpv~F~w~---~~g~~V~V~GSF---dnW~~--~ipM~rs~----~~f~i~l~Lp~G-~YqYKFiV 145 (210)
...+.++|.-. .-|++|+|+|+- -+|+. .++|.... ..|++++.|+.| ..+|||++
T Consensus 6 ~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 6 LKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 34567777654 368999999988 46986 36785432 269999999987 69999995
No 47
>PLN02316 synthase/transferase
Probab=91.57 E-value=1.2 Score=46.99 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=53.3
Q ss_pred CCCceeEEEEEcC------CCCeEEEEeecCCCccc--e--eeeee---CC-cEEEEEEcCCceEEEEEEE-cCeeecCC
Q 028378 89 DGVGIPTMITWSH------DGCEVAVEGSWDNWKTR--I--ALQRS---GK-DFTIMKVLPSGVYQYRFLV-DGLWKYAP 153 (210)
Q Consensus 89 ~~~~vpv~F~w~~------~g~~V~V~GSFdnW~~~--i--pM~rs---~~-~f~i~l~Lp~G~YqYKFiV-DG~W~~Dp 153 (210)
...+-++++-|+. +..+|+|.|.||+|+.. + .|.+. ++ -|.+++.+|..-|..-|+. ||. |
T Consensus 325 ~~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~----~ 400 (1036)
T PLN02316 325 FKAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP----P 400 (1036)
T ss_pred cCCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC----c
Confidence 3456678888873 46899999999999953 2 23332 23 4788999999999999987 663 3
Q ss_pred CCCeeeCCCCCeeEEEEcCCC
Q 028378 154 DLPSTQDDDGNVYNILDLQVN 174 (210)
Q Consensus 154 ~~P~~~D~~G~~NNvI~V~d~ 174 (210)
......|++++..=-+.|...
T Consensus 401 ~~~~~yDNn~~~Dyh~~v~~~ 421 (1036)
T PLN02316 401 GNARNYDNNGRQDFHAIVPNN 421 (1036)
T ss_pred ccccccccCCCcceeeecCCC
Confidence 333344444444333334333
No 48
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=91.33 E-value=1.7 Score=32.52 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=36.9
Q ss_pred CceeEEEEEc-CCCCeEEEEeecCC--Cc-cceeeeeeCC-----cEEEEEEcCCceEEEEEEE
Q 028378 91 VGIPTMITWS-HDGCEVAVEGSWDN--WK-TRIALQRSGK-----DFTIMKVLPSGVYQYRFLV 145 (210)
Q Consensus 91 ~~vpv~F~w~-~~g~~V~V~GSFdn--W~-~~ipM~rs~~-----~f~i~l~Lp~G~YqYKFiV 145 (210)
+.+.++|+-. ...++|.|.-.-+. +. ..++|.+.+. .|++++.++.|.+.|+|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 3444444433 34678888655443 22 2578987542 3889998888999999999
No 49
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=91.19 E-value=1.1 Score=46.68 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=50.1
Q ss_pred eEEE-EEcCCCCeEEEEeecCCCc--cceeeeee--CCcEEEEEE-cCCceEEEEEEEc------Ce----eecCCCCCe
Q 028378 94 PTMI-TWSHDGCEVAVEGSWDNWK--TRIALQRS--GKDFTIMKV-LPSGVYQYRFLVD------GL----WKYAPDLPS 157 (210)
Q Consensus 94 pv~F-~w~~~g~~V~V~GSFdnW~--~~ipM~rs--~~~f~i~l~-Lp~G~YqYKFiVD------G~----W~~Dp~~P~ 157 (210)
-|+| .|.+.+++|.|....++|. ..++|.+. .+.|++.+. +..|. .|+|.|+ |+ .+.||..-.
T Consensus 136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~a 214 (898)
T TIGR02103 136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSVS 214 (898)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcce
Confidence 4678 4999999999997666653 24789875 568999885 44564 3666664 53 478887764
Q ss_pred eeCCCCCeeEEEEcC
Q 028378 158 TQDDDGNVYNILDLQ 172 (210)
Q Consensus 158 ~~D~~G~~NNvI~V~ 172 (210)
+. ..|...=|+++.
T Consensus 215 ls-~n~~~S~VvDl~ 228 (898)
T TIGR02103 215 LS-ANSEYSQVVDLN 228 (898)
T ss_pred Ec-CCCCCeEEeCCc
Confidence 42 233333345544
No 50
>PRK03705 glycogen debranching enzyme; Provisional
Probab=90.87 E-value=0.84 Score=45.84 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=45.1
Q ss_pred EEE-EEcCCCCeEEEEeecCCCc--cceeeeee-CCcEEEEEE-cCCceEEEEEEEcCee-------------ecCCCCC
Q 028378 95 TMI-TWSHDGCEVAVEGSWDNWK--TRIALQRS-GKDFTIMKV-LPSGVYQYRFLVDGLW-------------KYAPDLP 156 (210)
Q Consensus 95 v~F-~w~~~g~~V~V~GSFdnW~--~~ipM~rs-~~~f~i~l~-Lp~G~YqYKFiVDG~W-------------~~Dp~~P 156 (210)
|.| .|.+.+++|.|.. |+++. ..++|.+. ++.|.+.+. +.+|. .|+|.|+|.| ++||.+.
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~-~Y~yrv~g~~~p~~g~~~~~~~~~~DPYA~ 98 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPGL-RYGYRVHGPWQPAQGHRFNPAKLLIDPCAR 98 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCCC-EEEEEEccccCcccCcccCCCcEecCcCce
Confidence 688 5889999999997 77653 35788765 568999875 55665 5999998742 5777665
Q ss_pred ee
Q 028378 157 ST 158 (210)
Q Consensus 157 ~~ 158 (210)
.+
T Consensus 99 ~~ 100 (658)
T PRK03705 99 QV 100 (658)
T ss_pred EE
Confidence 43
No 51
>PLN02316 synthase/transferase
Probab=89.97 E-value=1.8 Score=45.89 Aligned_cols=58 Identities=17% Similarity=0.350 Sum_probs=45.2
Q ss_pred CCCCceeEEEEEcC------CCCeEEEEeecCCCccc------eeeeeeCC-c-EEEEEEcCCceEEEEEEE
Q 028378 88 GDGVGIPTMITWSH------DGCEVAVEGSWDNWKTR------IALQRSGK-D-FTIMKVLPSGVYQYRFLV 145 (210)
Q Consensus 88 ~~~~~vpv~F~w~~------~g~~V~V~GSFdnW~~~------ipM~rs~~-~-f~i~l~Lp~G~YqYKFiV 145 (210)
-.+.+-+|++-|++ +..+|++.|+||+|+.. +.|++.++ . +.+++.+|...|-.-|+-
T Consensus 486 ~~~aG~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~~~g~~~~a~v~vP~da~~mdfvF 557 (1036)
T PLN02316 486 EVQAGTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPADNGSHLKATVKVPLDAYMMDFVF 557 (1036)
T ss_pred CCCCCCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeecCCCceEEEEEEccccceEEEEEE
Confidence 34557789999985 35799999999999964 34666543 3 588999999999888887
No 52
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=88.47 E-value=2.6 Score=32.61 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=41.8
Q ss_pred CCceeEEEEEc-CCCCeEEEE-eecCCC----c-cceeeeeeC--C---cEEEEEEcCCceEEEEEEE--cCe-eecCC
Q 028378 90 GVGIPTMITWS-HDGCEVAVE-GSWDNW----K-TRIALQRSG--K---DFTIMKVLPSGVYQYRFLV--DGL-WKYAP 153 (210)
Q Consensus 90 ~~~vpv~F~w~-~~g~~V~V~-GSFdnW----~-~~ipM~rs~--~---~f~i~l~Lp~G~YqYKFiV--DG~-W~~Dp 153 (210)
...+.++|+=. ...++|.|. |+-.+| . ...+|+|.. + .|++++.++..+.+|.|.| +|+ +.++.
T Consensus 20 ~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y~~ 98 (120)
T PF02903_consen 20 GDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDGGETYYYGE 98 (120)
T ss_dssp TTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEEET
T ss_pred CCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEEeC
Confidence 44566666554 467899985 677666 2 236888742 2 4899999999999999988 344 44443
No 53
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=84.84 E-value=3.3 Score=44.48 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=41.0
Q ss_pred eEEE-EEcCCCCeEEEEeecCCCcc----ceeee-eeCCcEEEEEE-cCCceEEEEEEEcCee
Q 028378 94 PTMI-TWSHDGCEVAVEGSWDNWKT----RIALQ-RSGKDFTIMKV-LPSGVYQYRFLVDGLW 149 (210)
Q Consensus 94 pv~F-~w~~~g~~V~V~GSFdnW~~----~ipM~-rs~~~f~i~l~-Lp~G~YqYKFiVDG~W 149 (210)
-|+| .|+..+++|.|. -|++|.. +++|. +.++.|.+.+. +.+|. .|+|.|+|.+
T Consensus 24 gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 24 GVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred eEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 3788 478899999997 8888863 35664 45678988765 77887 6999999854
No 54
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=84.65 E-value=2.8 Score=31.03 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=39.3
Q ss_pred CceeEEEEEcCCC---CeEEEEeec-CCCccceeeeee-CCcEEEEEEcCCceEEEEEEE-c-CeeecC
Q 028378 91 VGIPTMITWSHDG---CEVAVEGSW-DNWKTRIALQRS-GKDFTIMKVLPSGVYQYRFLV-D-GLWKYA 152 (210)
Q Consensus 91 ~~vpv~F~w~~~g---~~V~V~GSF-dnW~~~ipM~rs-~~~f~i~l~Lp~G~YqYKFiV-D-G~W~~D 152 (210)
.-.-++|....+. .+|.|.++= .+|. +|.|+ +..|.+.-.++.|-+.+|+-. | |+++..
T Consensus 12 ~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 12 YYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp TEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred cEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 3456677777543 578998443 5585 69998 458998777888899999988 7 887764
No 55
>PLN02877 alpha-amylase/limit dextrinase
Probab=83.36 E-value=3 Score=43.89 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=41.7
Q ss_pred eEEE-EEcCCCCeEEEEeecCCCc---c--ceeeeeeCCcEEEEEEc-CCceEEEEEEEc------Ce----eecCCCCC
Q 028378 94 PTMI-TWSHDGCEVAVEGSWDNWK---T--RIALQRSGKDFTIMKVL-PSGVYQYRFLVD------GL----WKYAPDLP 156 (210)
Q Consensus 94 pv~F-~w~~~g~~V~V~GSFdnW~---~--~ipM~rs~~~f~i~l~L-p~G~YqYKFiVD------G~----W~~Dp~~P 156 (210)
-|+| .|.+.+++|.|.- |+++. . .++|.+.++.|++.+.- ..| ..|+|.|+ |+ .+.||..-
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G-~~Y~Y~V~v~~p~~g~~~~~~v~DPYA~ 300 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLKESNGVWSVEGPKSWEG-CYYVYEVSVYHPSTGKVETCYANDPYAR 300 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEecccCCCCEEEEEeccCCCC-CeeEEEEeecccCCCcccccccCCccce
Confidence 4678 5999999999984 56553 2 24677667799998763 355 34666665 32 35677665
Q ss_pred ee
Q 028378 157 ST 158 (210)
Q Consensus 157 ~~ 158 (210)
.+
T Consensus 301 al 302 (970)
T PLN02877 301 GL 302 (970)
T ss_pred EE
Confidence 33
No 56
>PLN03244 alpha-amylase; Provisional
Probab=78.96 E-value=2 Score=44.58 Aligned_cols=42 Identities=17% Similarity=0.406 Sum_probs=32.2
Q ss_pred EEEEcCCCCeEEEEeecCCCccceeee------eeC-CcEEEEEE--cCCc
Q 028378 96 MITWSHDGCEVAVEGSWDNWKTRIALQ------RSG-KDFTIMKV--LPSG 137 (210)
Q Consensus 96 ~F~w~~~g~~V~V~GSFdnW~~~ipM~------rs~-~~f~i~l~--Lp~G 137 (210)
.-.|.+||.--+|+|+||||.++.-.. |++ +.|.|.|+ |..|
T Consensus 135 ~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~ 185 (872)
T PLN03244 135 FMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKLREG 185 (872)
T ss_pred eEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhhhcC
Confidence 347999999999999999999854333 333 57888874 7777
No 57
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=77.94 E-value=6.2 Score=32.06 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=34.3
Q ss_pred eeEEEEEcCC-CCeEEEEeecCCCccceeee-eeCCcEEEEEEcCCceEEEEE
Q 028378 93 IPTMITWSHD-GCEVAVEGSWDNWKTRIALQ-RSGKDFTIMKVLPSGVYQYRF 143 (210)
Q Consensus 93 vpv~F~w~~~-g~~V~V~GSFdnW~~~ipM~-rs~~~f~i~l~Lp~G~YqYKF 143 (210)
=.|+|+|... +.+|...++.+-|... .+. +-+..|+.++.- +|.|.|+=
T Consensus 62 DTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~~~~~s~~~Tfe~-~G~Y~Y~C 112 (128)
T COG3794 62 DTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKAGINESFTHTFET-PGEYTYYC 112 (128)
T ss_pred CEEEEEECCCCCceEEEeCCCCccccc-ccccCCCcceEEEecc-cceEEEEe
Confidence 3578888876 9999999999655542 232 223467777664 99999973
No 58
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=68.60 E-value=8 Score=39.72 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=28.3
Q ss_pred EEE-EEcCCCCeEEEEeecCCCccceeee---eeC-CcEEEEEE
Q 028378 95 TMI-TWSHDGCEVAVEGSWDNWKTRIALQ---RSG-KDFTIMKV 133 (210)
Q Consensus 95 v~F-~w~~~g~~V~V~GSFdnW~~~ipM~---rs~-~~f~i~l~ 133 (210)
|.| .|.+.+..|.++|+||+|... .+. |.. +.|++.+.
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~-~~~~~~k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPS-SNELKPKDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCc-ccccCcccccceeEEecC
Confidence 666 499999999999999999973 343 332 36877654
No 59
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=68.57 E-value=7.3 Score=34.10 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=13.0
Q ss_pred EEE-cCe--eecCCCCCee
Q 028378 143 FLV-DGL--WKYAPDLPST 158 (210)
Q Consensus 143 FiV-DG~--W~~Dp~~P~~ 158 (210)
.|| ||+ |.|||++..+
T Consensus 66 ~iVsDGk~lW~YDpdleQV 84 (210)
T TIGR03009 66 AWICNGTAVYAYNGLAKTV 84 (210)
T ss_pred EEEECCCEEEEECCChhhE
Confidence 455 998 9999999854
No 60
>PRK10785 maltodextrin glucosidase; Provisional
Probab=66.62 E-value=35 Score=33.80 Aligned_cols=59 Identities=10% Similarity=0.040 Sum_probs=40.3
Q ss_pred CCceeEEEEEcC--CCCeEEEEeecCCCccceeeeeeCC-----cEEEEEEcC--CceEEEEEEE--cCe
Q 028378 90 GVGIPTMITWSH--DGCEVAVEGSWDNWKTRIALQRSGK-----DFTIMKVLP--SGVYQYRFLV--DGL 148 (210)
Q Consensus 90 ~~~vpv~F~w~~--~g~~V~V~GSFdnW~~~ipM~rs~~-----~f~i~l~Lp--~G~YqYKFiV--DG~ 148 (210)
...+.++++-.. ..+.|.|.=.+++-...++|++.+. .|++++.++ .+++.|+|+| +++
T Consensus 18 ~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 18 KDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 345566665443 2578998776666555678987532 388888885 7789999988 554
No 61
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=56.63 E-value=68 Score=24.76 Aligned_cols=59 Identities=25% Similarity=0.393 Sum_probs=37.2
Q ss_pred CCceeEEEEEcC--CCCeEEEEeecCCCccceeee----e-----e--C--CcEEEEEEcCCc--------eEEEEEEEc
Q 028378 90 GVGIPTMITWSH--DGCEVAVEGSWDNWKTRIALQ----R-----S--G--KDFTIMKVLPSG--------VYQYRFLVD 146 (210)
Q Consensus 90 ~~~vpv~F~w~~--~g~~V~V~GSFdnW~~~ipM~----r-----s--~--~~f~i~l~Lp~G--------~YqYKFiVD 146 (210)
...+..++.-.. -.|+|.|.=+||+|.....+. . + . +.|...+.|++. .+--||.++
T Consensus 18 ~~~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~ 97 (113)
T PF03370_consen 18 QQSLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVN 97 (113)
T ss_dssp SSEEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEET
T ss_pred CCEEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeC
Confidence 345555665553 458899999999998643321 1 1 1 258888888643 456678888
Q ss_pred Ce
Q 028378 147 GL 148 (210)
Q Consensus 147 G~ 148 (210)
|+
T Consensus 98 g~ 99 (113)
T PF03370_consen 98 GQ 99 (113)
T ss_dssp TE
T ss_pred CC
Confidence 87
No 62
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=46.49 E-value=27 Score=29.96 Aligned_cols=38 Identities=21% Similarity=0.572 Sum_probs=22.9
Q ss_pred CCccceeeeeeCC-cEEEEEEcC-CceEEEEEE--Ec--CeeecC
Q 028378 114 NWKTRIALQRSGK-DFTIMKVLP-SGVYQYRFL--VD--GLWKYA 152 (210)
Q Consensus 114 nW~~~ipM~rs~~-~f~i~l~Lp-~G~YqYKFi--VD--G~W~~D 152 (210)
.|+. .+|+..++ .|...+.+. .|.|+|+.. +| +.|+++
T Consensus 56 ~w~~-vpM~~~gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 56 EWQE-VPMTPLGNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp B-----B-EESTS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred ccee-eccccCCCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 4875 89998887 599998775 899999986 45 446554
No 63
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=45.73 E-value=46 Score=24.03 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=26.1
Q ss_pred eEEEEEcCC-CCeEE-EEeecCCCccceeeeeeCCcEEEEEEcCCceEEEE
Q 028378 94 PTMITWSHD-GCEVA-VEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYR 142 (210)
Q Consensus 94 pv~F~w~~~-g~~V~-V~GSFdnW~~~ipM~rs~~~f~i~l~Lp~G~YqYK 142 (210)
.|+|++... ..+|. ..|.+.++...-.+...+..|+.++. .+|.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCccccccccccCCCCEEEEECC-CCEEEEEE
Confidence 455655543 45664 44555444322233344556777654 58888775
No 64
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.45 E-value=24 Score=35.52 Aligned_cols=26 Identities=27% Similarity=0.750 Sum_probs=20.9
Q ss_pred CCceEEEEEEEcCeeec---CCCCCeeeC
Q 028378 135 PSGVYQYRFLVDGLWKY---APDLPSTQD 160 (210)
Q Consensus 135 p~G~YqYKFiVDG~W~~---Dp~~P~~~D 160 (210)
..|+|+|||.++|+|+. |.-+|+..+
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 46999999999999964 677786543
No 65
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=41.23 E-value=48 Score=31.55 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=19.7
Q ss_pred CCcEEEEE--EcCCceEEEEEEEcCe
Q 028378 125 GKDFTIMK--VLPSGVYQYRFLVDGL 148 (210)
Q Consensus 125 ~~~f~i~l--~Lp~G~YqYKFiVDG~ 148 (210)
++.|+..+ ..++|+|+.++.+||.
T Consensus 170 DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 170 DGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred CceEEEEeeccCCCceEEEEEEEcCc
Confidence 46798765 4579999999999976
No 66
>PF05520 Citrus_P18: Citrus tristeza virus P18 protein; InterPro: IPR008452 This family contains the P18 proteins of citrus tristeza virus (CTV). CTV is a member of the closterovirus group and is one of the more complex single-stranded RNA viruses. Assembly of the viral genome into virions is a critical process of the virus life cycle often defining the ability of the virus to move within the plant and to be transmitted horizontally to other plants. Closteroviridae virions are polar helical rods assembled primarily by a major coat protein, but with a related minor coat protein at one end. It is the only virus family that encodes a protein with similarity to cellular chaperones, a 70kDa heat-shock protein homologue (HSP70h). Deletion mutagenesis reveals that p33, p6, p18, p13, p20, and p23 genes are not needed for virion formation. Their function is unknown [].
Probab=40.97 E-value=13 Score=30.38 Aligned_cols=10 Identities=60% Similarity=1.560 Sum_probs=8.3
Q ss_pred ceeeeeeecC
Q 028378 199 ECSYWCYLNS 208 (210)
Q Consensus 199 ~~~~~~~~~~ 208 (210)
-||.|||-|.
T Consensus 139 gcsiwcynng 148 (167)
T PF05520_consen 139 GCSIWCYNNG 148 (167)
T ss_pred ceEEEEEcCC
Confidence 4999999874
No 67
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=40.78 E-value=60 Score=24.16 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=21.9
Q ss_pred CceeEEEEEcCC---CCeEEEEeecCCCccceeeeeeCCcEEEEE-EcCCceEEEE
Q 028378 91 VGIPTMITWSHD---GCEVAVEGSWDNWKTRIALQRSGKDFTIMK-VLPSGVYQYR 142 (210)
Q Consensus 91 ~~vpv~F~w~~~---g~~V~V~GSFdnW~~~ipM~rs~~~f~i~l-~Lp~G~YqYK 142 (210)
.+.+++|+|... ..++.+.+ -|.. ..| +.++..++++ .+.+|+|+|.
T Consensus 41 ~G~~v~l~~~N~~~~~h~~~i~~---~~~~-~~l-~~g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 41 AGQPVTLTFTNNDSRPHEFVIPD---LGIS-KVL-PPGETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp TTCEEEEEEEE-SSS-EEEEEGG---GTEE-EEE--TT-EEEEEEEE-S-EEEEEB
T ss_pred CCCeEEEEEEECCCCcEEEEECC---CceE-EEE-CCCCEEEEEEcCCCCEEEEEE
Confidence 456778888732 23333333 1111 122 2244566665 7899998874
No 68
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=37.22 E-value=1.1e+02 Score=24.14 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=24.0
Q ss_pred ceeEEEEEcCCCCeEEEE-eecCCCccceeeeeeCCcEEEEEEcCCceEEEE
Q 028378 92 GIPTMITWSHDGCEVAVE-GSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYR 142 (210)
Q Consensus 92 ~vpv~F~w~~~g~~V~V~-GSFdnW~~~ipM~rs~~~f~i~l~Lp~G~YqYK 142 (210)
+=.|+|+|...+..|... +..- +....-....+..|+.++. .+|.|.|.
T Consensus 22 GdTV~f~n~d~~Hnv~~~~~~~p-~g~~~~~s~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 22 GDTVTFVPTDKGHNVETIKGMIP-EGAEAFKSKINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CCEEEEEECCCCeeEEEccCCCc-CCcccccCCCCCEEEEEeC-CCEEEEEE
Confidence 345788887666666542 2111 1110000122345666655 56777775
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=36.11 E-value=1.1e+02 Score=24.24 Aligned_cols=47 Identities=17% Similarity=0.420 Sum_probs=25.3
Q ss_pred eEEEEEcC--CCCeEEEEeecCCCccceeeeeeCCcEEEEEEcCCceEEEE
Q 028378 94 PTMITWSH--DGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYR 142 (210)
Q Consensus 94 pv~F~w~~--~g~~V~V~GSFdnW~~~ipM~rs~~~f~i~l~Lp~G~YqYK 142 (210)
.|+|+|+. ....|...+. ..|.....+...+..|+.++. .+|.|.|.
T Consensus 51 TVtw~~~~d~~~HnV~s~~~-~~f~s~~~~~~~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 51 TVVWEWTGEGGGHNVVSDGD-GDLDESERVSEEGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred EEEEEECCCCCCEEEEECCC-CCccccccccCCCCEEEEEec-CCcEEEEE
Confidence 56777764 3456654311 234421112233456877775 68888886
No 70
>PLN00115 pollen allergen group 3; Provisional
Probab=35.05 E-value=1.3e+02 Score=24.06 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=33.3
Q ss_pred CCCeEEEEeec-CCCccceeeeee-CCcEEEEEE-cCCceEEEEEEEc-Ceeec
Q 028378 102 DGCEVAVEGSW-DNWKTRIALQRS-GKDFTIMKV-LPSGVYQYRFLVD-GLWKY 151 (210)
Q Consensus 102 ~g~~V~V~GSF-dnW~~~ipM~rs-~~~f~i~l~-Lp~G~YqYKFiVD-G~W~~ 151 (210)
+-.+|.|.++= .+|. .+|+|+ +..|++.-. .+.|-+.+||... |.+.+
T Consensus 46 dI~~V~Ik~~g~~~W~--~~M~rswGavW~~~s~~pl~GPlS~R~t~~~G~~~v 97 (118)
T PLN00115 46 AISEVEIKEKGAKDWV--DDLKESSTNTWTLKSKAPLKGPFSVRFLVKGGGYRV 97 (118)
T ss_pred CEEEEEEeecCCCccc--CccccCccceeEecCCCCCCCceEEEEEEeCCCEEE
Confidence 34688888863 4685 159997 558997543 3468899999885 66443
No 71
>PLN03023 Expansin-like B1; Provisional
Probab=32.75 E-value=97 Score=27.84 Aligned_cols=50 Identities=16% Similarity=0.414 Sum_probs=33.5
Q ss_pred eeEEEEEcCC---CCeEEEEee-cCCCccceeeeee-CCcEEEEEEcCCceEEEEEEEc
Q 028378 93 IPTMITWSHD---GCEVAVEGS-WDNWKTRIALQRS-GKDFTIMKVLPSGVYQYRFLVD 146 (210)
Q Consensus 93 vpv~F~w~~~---g~~V~V~GS-FdnW~~~ipM~rs-~~~f~i~l~Lp~G~YqYKFiVD 146 (210)
.-|++....+ -..|.|.++ =.+|. +|.|+ +..|++... +.|.+.+||.|.
T Consensus 162 l~vlv~~vgG~GdI~~V~Ik~~~~~~W~---~M~rnwGa~W~~~~~-l~Gp~slrf~v~ 216 (247)
T PLN03023 162 LAIVMLYQAGQNDILAVEIWQEDCKEWR---GMRKAYGAVWDMPNP-PKGPITLRFQVS 216 (247)
T ss_pred EEEEEEEcCCCccEEEEEEEecCCCCce---ECccCCcceeEcCCC-CCCceeEEEEEE
Confidence 3444444432 257888884 35785 69997 557988644 478999999884
No 72
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=30.43 E-value=56 Score=24.57 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=14.6
Q ss_pred EEEEEcCCceEEEEEEEcC
Q 028378 129 TIMKVLPSGVYQYRFLVDG 147 (210)
Q Consensus 129 ~i~l~Lp~G~YqYKFiVDG 147 (210)
+..+.|+.|+|.-+|...+
T Consensus 92 ~~~v~l~~G~h~i~l~~~~ 110 (125)
T PF03422_consen 92 SVSVKLPAGKHTIYLVFNG 110 (125)
T ss_dssp EEEEEEESEEEEEEEEESS
T ss_pred EEEEeeCCCeeEEEEEEEC
Confidence 3457788899988888865
No 73
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=28.86 E-value=89 Score=24.35 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=22.6
Q ss_pred eeeeeeCC---cEEEEEEcCCceEEEEEEEcCeeecCCCC
Q 028378 119 IALQRSGK---DFTIMKVLPSGVYQYRFLVDGLWKYAPDL 155 (210)
Q Consensus 119 ipM~rs~~---~f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~ 155 (210)
+-..|+.- -|... |.|-|+|.|. +|.|++.-+.
T Consensus 48 ~VINkQ~p~~QIWlas---~sG~~hf~~~-~~~W~~~r~g 83 (105)
T PRK00446 48 IIINRQEPLHELWLAA---KSGGFHFDYK-DGEWICDRSG 83 (105)
T ss_pred EEEeCCCchhheeEec---CCCCccceec-CCeEEECCCC
Confidence 44556543 35543 6788999995 9999987544
No 74
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=28.67 E-value=1.2e+02 Score=23.49 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=23.7
Q ss_pred eeeeeCCcEEEEEEcC-CceEEEEEEEcCeeecCCCC
Q 028378 120 ALQRSGKDFTIMKVLP-SGVYQYRFLVDGLWKYAPDL 155 (210)
Q Consensus 120 pM~rs~~~f~i~l~Lp-~G~YqYKFiVDG~W~~Dp~~ 155 (210)
-+.|+.-..++-+-=| .|-|+|.|. +|.|+..-+.
T Consensus 52 VINkQ~p~~QIWlsSpisG~~hf~~~-~~~W~~~r~g 87 (109)
T PF01491_consen 52 VINKQPPNRQIWLSSPISGPFHFDYD-DGKWIDTRDG 87 (109)
T ss_dssp EEEEECCCTEEEEEETTTEEEEEEEE-SSSEEETTTT
T ss_pred EEeCCCHHHHHHHhcccCCceEEEEc-CCEEEECCCC
Confidence 3455544344444447 899999999 9999977643
No 75
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=28.55 E-value=54 Score=21.95 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=13.4
Q ss_pred EEcCCceEEEEEEE---cCeeecCC
Q 028378 132 KVLPSGVYQYRFLV---DGLWKYAP 153 (210)
Q Consensus 132 l~Lp~G~YqYKFiV---DG~W~~Dp 153 (210)
..|+||.|.++-.+ +|.|..+.
T Consensus 34 ~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 34 TNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp ES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EeCCCEEEEEEEEEECCCCCcCccc
Confidence 47999999998877 47777664
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=27.71 E-value=1.5e+02 Score=27.47 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=32.1
Q ss_pred CceEEEEEEEcCe-eecCCCCCeeeCCCCCeeEEEEcCCCcccc
Q 028378 136 SGVYQYRFLVDGL-WKYAPDLPSTQDDDGNVYNILDLQVNITFI 178 (210)
Q Consensus 136 ~G~YqYKFiVDG~-W~~Dp~~P~~~D~~G~~NNvI~V~d~vpe~ 178 (210)
.-.++++|.|+.. |-.+.+.-..++..|.+ |||......|-.
T Consensus 141 ~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v-~ILsypsLkpv~ 183 (313)
T KOG1407|consen 141 VNEEQFKFEVNEISWNNSNDLFFLTNGLGCV-EILSYPSLKPVQ 183 (313)
T ss_pred eehhcccceeeeeeecCCCCEEEEecCCceE-EEEecccccccc
Confidence 4579999999877 88777777888877766 788877655544
No 77
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.65 E-value=40 Score=33.61 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCc-eEEEEEEEc---Ce-eecCCCCC
Q 028378 126 KDFTIMKVLPSG-VYQYRFLVD---GL-WKYAPDLP 156 (210)
Q Consensus 126 ~~f~i~l~Lp~G-~YqYKFiVD---G~-W~~Dp~~P 156 (210)
+.+-....++|| .|.|+|.|| |. |=+.....
T Consensus 98 G~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~ 133 (563)
T KOG1263|consen 98 GVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSW 133 (563)
T ss_pred CCccccCCcCCCCeEEEEEEeCCcceeEEEeecccc
Confidence 366677899999 899999999 43 55554443
No 78
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=25.43 E-value=2.2e+02 Score=19.46 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=26.2
Q ss_pred EEEEcCCCCeEEEEeecCCCccceeeeeeCCcEEEEEEcCCceEEEEEEEcCe
Q 028378 96 MITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGL 148 (210)
Q Consensus 96 ~F~w~~~g~~V~V~GSFdnW~~~ipM~rs~~~f~i~l~Lp~G~YqYKFiVDG~ 148 (210)
.|+=...+-+|+|-|.+-+ . .|+ ....|++|.|++++.-+|-
T Consensus 5 ~V~s~p~gA~V~vdg~~~G-~--tp~--------~~~~l~~G~~~v~v~~~Gy 46 (71)
T PF08308_consen 5 RVTSNPSGAEVYVDGKYIG-T--TPL--------TLKDLPPGEHTVTVEKPGY 46 (71)
T ss_pred EEEEECCCCEEEECCEEec-c--Ccc--------eeeecCCccEEEEEEECCC
Confidence 3444466778888776655 1 121 1123778888888888874
No 79
>PHA02659 endothelin precursor; Provisional
Probab=25.38 E-value=85 Score=22.97 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=17.6
Q ss_pred hccCcCcccccceeeeeeec
Q 028378 188 VAVTCHSLLGFECSYWCYLN 207 (210)
Q Consensus 188 ~~~tp~s~~~~~~~~~~~~~ 207 (210)
+--++.|+.-=+|-|.|.|.
T Consensus 48 kRCsC~s~~DkECvyfChLD 67 (70)
T PHA02659 48 KRCACDSHDDKECLNFCELD 67 (70)
T ss_pred cccccccccccceEEEEeee
Confidence 56789999999999999885
No 80
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=24.51 E-value=2.5e+02 Score=23.56 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=30.9
Q ss_pred EEEEEcCCCCeEEEEeecCCCccceeeeeeCC-cEEEEEEc-CCceEEEEEEEc
Q 028378 95 TMITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVL-PSGVYQYRFLVD 146 (210)
Q Consensus 95 v~F~w~~~g~~V~V~GSFdnW~~~ipM~rs~~-~f~i~l~L-p~G~YqYKFiVD 146 (210)
|..+.+..+......|+| .||.-+++ -|-..+.| .+|+|+-+|.|+
T Consensus 70 v~y~i~~~~~~~~~~G~~------mPM~A~DGpHYG~Nvkl~g~G~Y~v~~~I~ 117 (151)
T PF10634_consen 70 VSYEITKKGSGKVQEGTF------MPMVASDGPHYGDNVKLDGPGKYKVTFTIG 117 (151)
T ss_dssp EEEEEEETTTTEEEEEEE------EEEEETTEEEEEEEE-STSSEEEEEEEEEE
T ss_pred EEEEEEeCCCCeEEEEec------ceeecCcCccccccccCCCCccEEEEEEEc
Confidence 444555444444677766 47877666 46677777 589999999997
No 81
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=22.44 E-value=74 Score=28.89 Aligned_cols=25 Identities=28% Similarity=0.596 Sum_probs=20.5
Q ss_pred cCCceEEEEEEEcCeeec---CCCCCee
Q 028378 134 LPSGVYQYRFLVDGLWKY---APDLPST 158 (210)
Q Consensus 134 Lp~G~YqYKFiVDG~W~~---Dp~~P~~ 158 (210)
-+.|.|..||.++|.|+. |...|+.
T Consensus 98 ~~~G~y~vrl~~~G~w~~V~VDd~lP~~ 125 (318)
T smart00230 98 NYAGIFHFRFWRFGKWVDVVIDDRLPTY 125 (318)
T ss_pred ccCCEEEEEEEECCEEEEEEecCCCeee
Confidence 467999999999999865 7777764
No 82
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=22.16 E-value=3.1e+02 Score=21.68 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=31.6
Q ss_pred eEEEEeecCCCccceee-eeeCCcEEEEEEcCCceEEEEEEEcCeeecC
Q 028378 105 EVAVEGSWDNWKTRIAL-QRSGKDFTIMKVLPSGVYQYRFLVDGLWKYA 152 (210)
Q Consensus 105 ~V~V~GSFdnW~~~ipM-~rs~~~f~i~l~Lp~G~YqYKFiVDG~W~~D 152 (210)
..++.|.|.+|+. +.- +...+.|.+...-+--.+-+-..+|++|.+-
T Consensus 30 ~~~~~g~~g~W~~-iaA~et~~GgyqVlWk~~~~~~~~vW~tDsngn~~ 77 (109)
T PF07483_consen 30 QPVVAGQFGGWQP-IAAEETSNGGYQVLWKNPGTDQFGVWNTDSNGNYI 77 (109)
T ss_pred EEEecCccCCcce-eeeEEecCCeeEEEEecCCCCeEEEEEecCCCCEE
Confidence 6688999999986 555 4455668888775443455556677655443
No 83
>PLN00050 expansin A; Provisional
Probab=21.40 E-value=2.2e+02 Score=25.61 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=32.2
Q ss_pred eEEEEeecCCCccceeeeeeC-CcEEEEEEcCCceEEEEEEE-cCeeecC
Q 028378 105 EVAVEGSWDNWKTRIALQRSG-KDFTIMKVLPSGVYQYRFLV-DGLWKYA 152 (210)
Q Consensus 105 ~V~V~GSFdnW~~~ipM~rs~-~~f~i~l~Lp~G~YqYKFiV-DG~W~~D 152 (210)
.|.|.|+=..| ++|.|+- ..|.+.-.|+.+-+.||+.. ||++++.
T Consensus 182 ~V~ikg~~~~W---~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~ 228 (247)
T PLN00050 182 AVSIKGSKSNW---QAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVIS 228 (247)
T ss_pred EEEEecCCCCe---eECccccCceeEccCCCCCCcEEEEEEecCCcEEEE
Confidence 68888875567 4699984 48987766765578898876 5665444
No 84
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=21.25 E-value=96 Score=29.18 Aligned_cols=22 Identities=55% Similarity=0.976 Sum_probs=13.2
Q ss_pred CcEEEEE---EcCCc-eEEEEEEEcC
Q 028378 126 KDFTIMK---VLPSG-VYQYRFLVDG 147 (210)
Q Consensus 126 ~~f~i~l---~Lp~G-~YqYKFiVDG 147 (210)
.+|++.+ .|.|| .|.|+|.+++
T Consensus 60 ~d~t~~v~v~gL~p~t~Y~Y~~~~~~ 85 (453)
T PF09423_consen 60 RDFTVKVDVTGLQPGTRYYYRFVVDG 85 (453)
T ss_dssp GTTEEEEEE-S--TT-EEEEEEEE--
T ss_pred CCeEeecccCCCCCCceEEEEEEEec
Confidence 3555543 37788 8999999964
No 85
>COG1477 ApbE Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=21.06 E-value=1.9e+02 Score=27.09 Aligned_cols=53 Identities=28% Similarity=0.347 Sum_probs=32.7
Q ss_pred CCeEEEEe---ecCCCccceeeeeeC-CcEEEEEEc------CCceEEEEEEEcCee---ecCCCC
Q 028378 103 GCEVAVEG---SWDNWKTRIALQRSG-KDFTIMKVL------PSGVYQYRFLVDGLW---KYAPDL 155 (210)
Q Consensus 103 g~~V~V~G---SFdnW~~~ipM~rs~-~~f~i~l~L------p~G~YqYKFiVDG~W---~~Dp~~ 155 (210)
|.++.+.| +=..|.-.+..-... +....++.| .+|.|+-.|.+||++ +.||.-
T Consensus 201 GG~i~~~G~~~~g~pW~IgI~~P~~~~~~~~~ii~l~d~aVaTSG~Y~r~~e~dG~ry~HilDP~T 266 (337)
T COG1477 201 GGEIRVIGKNPDGKPWRIGIQNPFAPRGAVQGIVPLKDGAVATSGDYERYFEVDGKRYHHILDPKT 266 (337)
T ss_pred CcceEEeccCCCCCCcEEEEeCCCCCCCceeEEEecCCceEEcccCceeEEEECCEEEeeecCCCC
Confidence 45788888 334586543322222 334444444 589999999999984 457754
No 86
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=20.77 E-value=1.3e+02 Score=23.27 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=22.8
Q ss_pred ceeeeeeCCcEEEEEEcCCceEEEEEEEcCeeecCCCC
Q 028378 118 RIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDL 155 (210)
Q Consensus 118 ~ipM~rs~~~f~i~l~Lp~G~YqYKFiVDG~W~~Dp~~ 155 (210)
++-..|+.-.-+|-+-=|.|-|+|.|. +|.|+..-+.
T Consensus 45 ~~VINkQ~p~~QIWlaspsG~~hF~~~-~~~Wi~~r~g 81 (102)
T TIGR03421 45 QIIINKQEPLHQIWLAAKSGGFHFDYD-GGAWIDTRDG 81 (102)
T ss_pred EEEEeCCchhhhheeecCCCCccceec-CCEEEECCCC
Confidence 344555543333333335888999984 8999987654
No 87
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=20.49 E-value=84 Score=27.71 Aligned_cols=22 Identities=32% Similarity=0.831 Sum_probs=17.5
Q ss_pred CceEEEEEEEcCeeec---CCCCCe
Q 028378 136 SGVYQYRFLVDGLWKY---APDLPS 157 (210)
Q Consensus 136 ~G~YqYKFiVDG~W~~---Dp~~P~ 157 (210)
.|.|.+||.++|.|+. |...|+
T Consensus 87 ~G~y~v~l~~~G~w~~V~VDd~lP~ 111 (298)
T PF00648_consen 87 NGIYTVRLFKNGEWREVTVDDRLPC 111 (298)
T ss_dssp SSEEEEEEEETTEEEEEEEES-EEE
T ss_pred CceeeEeeccCCeeeeeccchhhhc
Confidence 4999999999999874 666666
No 88
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=20.36 E-value=1.2e+02 Score=23.12 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=11.7
Q ss_pred EEEEcCCceEEEEEEEcC
Q 028378 130 IMKVLPSGVYQYRFLVDG 147 (210)
Q Consensus 130 i~l~Lp~G~YqYKFiVDG 147 (210)
+.+.++.|.|.-+|+..|
T Consensus 101 ~~v~~~~G~~~l~~~~~~ 118 (129)
T smart00606 101 ATVTLPAGVHDVYLVFKG 118 (129)
T ss_pred EEEccCCceEEEEEEEEC
Confidence 345667887777776544
Done!