Citrus Sinensis ID: 028381

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEcccccHHHHHHHHcccccccccccccEEcEEEEEEEccEEEEEEEEEccccccccccHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEEccccccHHHHHHHHHHcccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHcHHHHHHHHcccccccEEEEEEccccHHHccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MDSSSASQQEFDYLFKLLMIgdsgvgkssLLLSftsdnfeelsptigvdfKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVtrrdtftnlSDVWAKEIDLYSTNQDCIKLLVgnkvdkeseRVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIldtpsllaegskglkknifkqkppeadaaasgcc
Flexible Loop (DISEMBL)
MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEelsptigvdfkVKYVDVGGKKLKLAIWDTAGQERFRTltssyyrgaqGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLvgnkvdkeservvtkkeginFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLkknifkqkppeadaaasgcc
Low Complexity Region (SEG)
MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC
Disordered region (IsUnstruct)
**********FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLA**************************
Disordered Region (DISOPRED)
************YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK*******************************SGCC
Disordered Region (DISEMBL)
********QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFK**************
Disordered Region (DISPRO)
********QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS*****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
O23657	212	Ras-related protein RABC1	yes	no	0.942	0.933	0.863	3e-98
O49841	210	Ras-related protein RABC2	no	no	0.985	0.985	0.695	1e-85
Q9SF92	205	Ras-related protein RABC2	no	no	0.957	0.980	0.642	6e-70
P36862	203	GTP-binding protein yptV3	N/A	no	0.847	0.876	0.631	6e-60
Q6DHC1	205	Ras-related protein Rab-1	yes	no	0.919	0.941	0.583	2e-55
Q5ZLG1	206	Ras-related protein Rab-1	yes	no	0.833	0.849	0.638	6e-55
P35293	206	Ras-related protein Rab-1	yes	no	0.923	0.941	0.573	1e-54
Q5EB77	206	Ras-related protein Rab-1	yes	no	0.923	0.941	0.573	1e-54
Q5R5H5	206	Ras-related protein Rab-1	yes	no	0.790	0.805	0.650	3e-54
Q9NP72	206	Ras-related protein Rab-1	yes	no	0.790	0.805	0.650	3e-54

>sp|O23657|RABC1_ARATH Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=2 SV=1

 Score =  357 bits (917), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 171/198 (86%), Positives = 187/198 (94%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
           SS+ Q EFDYLFK+L+IGDSGVGKSSLLLSFTS+ F++LSPTIGVDFKVKY+ +G KKLK
Sbjct: 3   SSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKKLK 62

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSD+WAKEIDLYSTNQDCIK
Sbjct: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIK 122

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
           +LVGNKVDKESER V+KKEGI+FAREYGCLF+ECSAKTRVNV+QCFEELVLKIL+TPSL 
Sbjct: 123 MLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLT 182

Query: 184 AEGSKGLKKNIFKQKPPE 201
           AEGS G KKNIFKQ P +
Sbjct: 183 AEGSSGGKKNIFKQNPAQ 200

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|O49841|RAC2A_ARATH Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1

 Score =  315 bits (807), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 144/207 (69%), Positives = 175/207 (84%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
           SS+ Q  +D  FK+L+IGDSGVGKSSLL+SF S + E+L+PTIGVDFK+K + VGGK+LK
Sbjct: 3   SSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLK 62

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           L IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNL DVW KEI+LYSTNQ+C++
Sbjct: 63  LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQECVR 122

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
           +LVGNKVD+ESER V+++EGI  A+E  C+F+ECSA+TR NV+QCFEEL LKI++ PSLL
Sbjct: 123 MLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPSLL 182

Query: 184 AEGSKGLKKNIFKQKPPEADAAASGCC 210
            EGS  +K+NI KQKP       SGCC
Sbjct: 183 EEGSSAVKRNILKQKPEHQTNTQSGCC 209

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF92|RAC2B_ARATH Ras-related protein RABC2b OS=Arabidopsis thaliana GN=RABC2B PE=2 SV=1

 Score =  263 bits (673), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 133/207 (64%), Positives = 166/207 (80%), Gaps = 6/207 (2%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
           SS+ Q  +D  FK+L+IGDSGVGKSSLLLSF S + E+L+PTIGVDFK+K + V GK+LK
Sbjct: 3   SSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGKRLK 62

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           L IWDTAGQE+FRTLTSSY+RG+QGII+VYDVT+R+TF NL+D+WAKEI+LYSTN DCIK
Sbjct: 63  LTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDCIK 122

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
           +LVGNKVD+ESER V+++EG+  A++  CLF ECSA+TR NV  CFEEL LKI++ PSLL
Sbjct: 123 MLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPSLL 182

Query: 184 AEGSKGLKKNIFKQKPPEADAAASGCC 210
            EGS  +K+       P+  A    CC
Sbjct: 183 EEGSSSVKRK------PDYRAHQGRCC 203

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P36862|YPTV3_VOLCA GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1

 Score =  230 bits (586), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 113/179 (63%), Positives = 137/179 (76%), Gaps = 1/179 (0%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           DY FK+L++GDSGVGKS +L  FTS  FEE  + TIGVDFKVKY+   GK+ KL IWDTA
Sbjct: 7   DYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTA 66

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRTLTSSYYRGAQGII VYDVTRRDTF +L   W +E D+YST +  IK++V NKV
Sbjct: 67  GQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKV 126

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKG 189
           D  ++R V+ +EG +FAR +GCLF+E SA+  + V Q FEEL+LKILDTP LL   + G
Sbjct: 127 DLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLETTAVG 185

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|Q6DHC1|RB18B_DANRE Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1

 Score =  215 bits (547), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 139/197 (70%), Gaps = 4/197 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + + G + KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVT+RDTFT L + W  E++ Y T  D +K+LVGNK+DK+
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDKD 127

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKN 193
           + R V + EG+ FAR++  LFIE SAKTR  VQ  FEELV KIL TP L  E S      
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLW-ESSIQNHGV 185

Query: 194 IFKQKPPEADAAASGCC 210
                 P+   A  G C
Sbjct: 186 QLSDNEPQRQGACGGYC 202

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Danio rerio (taxid: 7955)

>sp|Q5ZLG1|RAB18_CHICK Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1

 Score =  213 bits (543), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 115/180 (63%), Positives = 135/180 (75%), Gaps = 5/180 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +K+LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDKE 127

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGS--KGLK 191
           + R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L    S  KG+K
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESESQNKGVK 186

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Gallus gallus (taxid: 9031)

>sp|P35293|RAB18_MOUSE Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2

 Score =  213 bits (541), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/197 (57%), Positives = 137/197 (69%), Gaps = 3/197 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 127

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKN 193
           + R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L    ++     
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK 186

Query: 194 IFKQKPPEADAAASGCC 210
           +  ++      A  G C
Sbjct: 187 LSHREESRGGGACGGYC 203

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Mus musculus (taxid: 10090)

>sp|Q5EB77|RAB18_RAT Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1

 Score =  212 bits (540), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/197 (57%), Positives = 137/197 (69%), Gaps = 3/197 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 127

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKN 193
           + R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L    ++     
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK 186

Query: 194 IFKQKPPEADAAASGCC 210
           +  ++      A  G C
Sbjct: 187 LSPREESHGGGACGGYC 203

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Rattus norvegicus (taxid: 10116)

>sp|Q5R5H5|RAB18_PONAB Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1

 Score =  211 bits (537), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 129/169 (76%), Gaps = 3/169 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 127

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           + R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 175

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Pongo abelii (taxid: 9601)

>sp|Q9NP72|RAB18_HUMAN Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1

 Score =  211 bits (537), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 129/169 (76%), Gaps = 3/169 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 127

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           + R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 175

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
302142732	307	unnamed protein product [Vitis vinifera]	1.0	0.684	0.871	1e-107
225457841	211	PREDICTED: ras-related protein RABC1 iso	1.0	0.995	0.871	1e-106
388517279	209	unknown [Lotus japonicus]	0.995	1.0	0.9	1e-106
224093425	209	predicted protein [Populus trichocarpa]	0.995	1.0	0.895	1e-106
1370174	207	RAB1Y [Lotus japonicus]	0.985	1.0	0.893	1e-106
363808158	209	uncharacterized protein LOC100787603 [Gl	0.995	1.0	0.885	1e-105
449459232	209	PREDICTED: ras-related protein RABC1-lik	0.995	1.0	0.885	1e-105
351721968	209	uncharacterized protein LOC100526880 [Gl	0.995	1.0	0.880	1e-105
224080973	209	predicted protein [Populus trichocarpa]	0.995	1.0	0.885	1e-105
224062966	211	predicted protein [Populus trichocarpa]	0.995	0.990	0.866	1e-104

>gi|302142732|emb|CBI19935.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/210 (87%), Positives = 204/210 (97%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           +  SS+SQ EFDYLFKLL+IGDSGVGKS+LLLSFTS+ FE+LSPTIGVDFKVK+V++GGK
Sbjct: 98  LPDSSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSNTFEDLSPTIGVDFKVKHVNIGGK 157

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQG+IMVYDVTRR+TFTNLSD+WAKEIDLYSTNQD
Sbjct: 158 KLKLAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVTRRETFTNLSDIWAKEIDLYSTNQD 217

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKESERVVTKKEGI+FAREYGCLF+ECSAKTRVNV+QCFEELVLKIL+TP
Sbjct: 218 CIKMLVGNKVDKESERVVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 277

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLLAEGS G++KNIFKQKPPE+DA+ SGCC
Sbjct: 278 SLLAEGSSGVRKNIFKQKPPESDASTSGCC 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457841|ref|XP_002267387.1| PREDICTED: ras-related protein RABC1 isoform 1 [Vitis vinifera] gi|359492296|ref|XP_003634396.1| PREDICTED: ras-related protein RABC1 [Vitis vinifera]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/210 (87%), Positives = 204/210 (97%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           +  SS+SQ EFDYLFKLL+IGDSGVGKS+LLLSFTS+ FE+LSPTIGVDFKVK+V++GGK
Sbjct: 2   LPDSSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSNTFEDLSPTIGVDFKVKHVNIGGK 61

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQG+IMVYDVTRR+TFTNLSD+WAKEIDLYSTNQD
Sbjct: 62  KLKLAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVTRRETFTNLSDIWAKEIDLYSTNQD 121

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKESERVVTKKEGI+FAREYGCLF+ECSAKTRVNV+QCFEELVLKIL+TP
Sbjct: 122 CIKMLVGNKVDKESERVVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 181

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLLAEGS G++KNIFKQKPPE+DA+ SGCC
Sbjct: 182 SLLAEGSSGVRKNIFKQKPPESDASTSGCC 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517279|gb|AFK46701.1| unknown [Lotus japonicus]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/210 (90%), Positives = 202/210 (96%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           MDSSSA Q EFDYLFKLLMIGDSGVGKSSLLLSFTSD F+++SPTIGVDFKVKYV +GGK
Sbjct: 1   MDSSSAPQ-EFDYLFKLLMIGDSGVGKSSLLLSFTSDEFQDMSPTIGVDFKVKYVAIGGK 59

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS++WAKEIDLYSTNQD
Sbjct: 60  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQD 119

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKES+RVV+KKEGI+FAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP
Sbjct: 120 CIKMLVGNKVDKESDRVVSKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 179

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLLAEGSKG+KKNIFK K P+ADA+ S CC
Sbjct: 180 SLLAEGSKGVKKNIFKDKQPQADASTSSCC 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093425|ref|XP_002309918.1| predicted protein [Populus trichocarpa] gi|222852821|gb|EEE90368.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/210 (89%), Positives = 202/210 (96%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           MDSSS+S  EFDYLFKLLMIGDSGVGKSSLLLSFTSD FE+LSPTIGVDFKVK+V++GGK
Sbjct: 1   MDSSSSSP-EFDYLFKLLMIGDSGVGKSSLLLSFTSDTFEDLSPTIGVDFKVKFVNIGGK 59

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQGI+MVYDVTRRDTFTNLS++WAKEIDLYSTNQD
Sbjct: 60  KLKLAIWDTAGQERFRTLTSSYYRGAQGIVMVYDVTRRDTFTNLSEIWAKEIDLYSTNQD 119

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIKLLVGNKVDKES+RVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK+LDTP
Sbjct: 120 CIKLLVGNKVDKESDRVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKVLDTP 179

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLLAEGSKG+KKNIF +K P+ DA+ S CC
Sbjct: 180 SLLAEGSKGVKKNIFNEKRPQPDASTSSCC 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370174|emb|CAA98164.1| RAB1Y [Lotus japonicus]

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/207 (89%), Positives = 200/207 (96%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
           SS++ QEFDYLFKLLMIGDSGVGKSSLLLSFTSD F+++SPTIGVDFKVKYV +GGKKLK
Sbjct: 1   SSSAPQEFDYLFKLLMIGDSGVGKSSLLLSFTSDEFQDMSPTIGVDFKVKYVAIGGKKLK 60

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS++WAKEIDLYSTNQDCIK
Sbjct: 61  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIK 120

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
           +LVGNKVDKES+RVV+KKEGI+FAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL
Sbjct: 121 MLVGNKVDKESDRVVSKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 180

Query: 184 AEGSKGLKKNIFKQKPPEADAAASGCC 210
           AEGSKG+KKNIFK K P+ADA+ S CC
Sbjct: 181 AEGSKGVKKNIFKDKQPQADASTSSCC 207

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808158|ref|NP_001242481.1| uncharacterized protein LOC100787603 [Glycine max] gi|255639535|gb|ACU20062.1| unknown [Glycine max] gi|255639578|gb|ACU20083.1| unknown [Glycine max]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/210 (88%), Positives = 201/210 (95%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           MDSSS   QEFDYLFKLLMIGDSGVGKSSLLLSFTSD FE+LSPTIGVDFKVKYV +GGK
Sbjct: 1   MDSSS-EHQEFDYLFKLLMIGDSGVGKSSLLLSFTSDAFEDLSPTIGVDFKVKYVTMGGK 59

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLT+SYYRGAQGIIMVYDVTRR TFTNLS++WAKEIDLYSTNQD
Sbjct: 60  KLKLAIWDTAGQERFRTLTNSYYRGAQGIIMVYDVTRRGTFTNLSEIWAKEIDLYSTNQD 119

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKE +RVVTKKEGI+FAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP
Sbjct: 120 CIKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 179

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SL+AEGSKG+KKNIFK++PP++DA+ S CC
Sbjct: 180 SLIAEGSKGVKKNIFKERPPQSDASTSSCC 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459232|ref|XP_004147350.1| PREDICTED: ras-related protein RABC1-like [Cucumis sativus] gi|449513301|ref|XP_004164289.1| PREDICTED: ras-related protein RABC1-like [Cucumis sativus]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/210 (88%), Positives = 200/210 (95%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           MDS+S +Q EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE+LSPTIGVDFKVKYV  GGK
Sbjct: 1   MDSTS-NQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEDLSPTIGVDFKVKYVTAGGK 59

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS+VWAKEIDLYSTNQD
Sbjct: 60  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEVWAKEIDLYSTNQD 119

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKES R VTKKEGI+ AREYGCLF ECSAKTRVNVQQCFEELVLKILDTP
Sbjct: 120 CIKMLVGNKVDKESYRTVTKKEGIDMAREYGCLFTECSAKTRVNVQQCFEELVLKILDTP 179

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLL+EGSKG+++NIFK+KPP++DA+ S CC
Sbjct: 180 SLLSEGSKGVRRNIFKEKPPQSDASTSSCC 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721968|ref|NP_001235436.1| uncharacterized protein LOC100526880 [Glycine max] gi|255631052|gb|ACU15890.1| unknown [Glycine max]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/210 (88%), Positives = 200/210 (95%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           MDSSS   QEFDYLFKLLMIGDSGVGKSSLLLSFTSD FE+LSPTIGVD KVKYV +GGK
Sbjct: 1   MDSSSG-HQEFDYLFKLLMIGDSGVGKSSLLLSFTSDAFEDLSPTIGVDIKVKYVMMGGK 59

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS++WAKEIDLYSTNQD
Sbjct: 60  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQD 119

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+L GNK+DK+ +RVVTKKEGI+FAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP
Sbjct: 120 CIKMLAGNKLDKDGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 179

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SL+AEGSKG+KKNIFK +PP++DA+AS CC
Sbjct: 180 SLIAEGSKGVKKNIFKDRPPQSDASASSCC 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080973|ref|XP_002306250.1| predicted protein [Populus trichocarpa] gi|222855699|gb|EEE93246.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/210 (88%), Positives = 199/210 (94%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           MDSSS +  EFDYLFKLLMIGDSGVGKSSLLLSFTSD FE+LSPTIGVDFKVK+V++GGK
Sbjct: 1   MDSSS-NAPEFDYLFKLLMIGDSGVGKSSLLLSFTSDTFEDLSPTIGVDFKVKFVNIGGK 59

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
            LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS++WAKEIDLYSTNQD
Sbjct: 60  NLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQD 119

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKES+R VTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP
Sbjct: 120 CIKMLVGNKVDKESDRAVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 179

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLLAEGSKG+KKNIF +K P+ DA+ S CC
Sbjct: 180 SLLAEGSKGVKKNIFSEKRPQPDASTSSCC 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062966|ref|XP_002300952.1| predicted protein [Populus trichocarpa] gi|222842678|gb|EEE80225.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/210 (86%), Positives = 199/210 (94%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           M+  S SQQEF+YLFKLL+IGDSGVGKS+LLLSFTS NFE+LSPTIGVDFKVK+V +GGK
Sbjct: 1   MEVPSTSQQEFEYLFKLLLIGDSGVGKSTLLLSFTSKNFEDLSPTIGVDFKVKHVTIGGK 60

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLS++WAKEIDLYSTNQD
Sbjct: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWAKEIDLYSTNQD 120

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKESERVVTKKEGI+FAREYGCLF+ECSAKTRVNV+QCFEELVLKIL+TP
Sbjct: 121 CIKMLVGNKVDKESERVVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 180

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLLAEGS G+KKN+FKQKPPE D   S CC
Sbjct: 181 SLLAEGSSGVKKNVFKQKPPE-DVTTSSCC 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2029167	212	RAB18 "RAB GTPASE HOMOLOG B18"	0.985	0.976	0.836	1.3e-91
TAIR|locus:2831859	210	RABC2A "RAB GTPase homolog C2A	0.985	0.985	0.695	1.3e-77
TAIR|locus:2085084	205	RABC2b "RAB GTPase homolog C2B	0.957	0.980	0.642	8e-69
UNIPROTKB|Q5ZLG1	206	RAB18 "Ras-related protein Rab	0.919	0.936	0.586	8.9e-54
ZFIN|ZDB-GENE-040801-185	205	rab18b "RAB18B, member RAS onc	0.914	0.936	0.576	1.5e-53
UNIPROTKB|Q0IIG8	206	RAB18 "Ras-related protein Rab	0.909	0.927	0.590	3e-53
UNIPROTKB|Q9NP72	206	RAB18 "Ras-related protein Rab	0.909	0.927	0.590	3e-53
UNIPROTKB|I3LC07	206	RAB18 "Uncharacterized protein	0.909	0.927	0.590	3e-53
UNIPROTKB|Q5R5H5	206	RAB18 "Ras-related protein Rab	0.909	0.927	0.590	3e-53
MGI|MGI:102790	206	Rab18 "RAB18, member RAS oncog	0.909	0.927	0.590	3.8e-53

TAIR|locus:2029167 RAB18 "RAB GTPASE HOMOLOG B18" [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 174/208 (83%), Positives = 192/208 (92%)

Query:     4 SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
             SS+ Q EFDYLFK+L+IGDSGVGKSSLLLSFTS+ F++LSPTIGVDFKVKY+ +G KKLK
Sbjct:     3 SSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKKLK 62

Query:    64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
             LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSD+WAKEIDLYSTNQDCIK
Sbjct:    63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIK 122

Query:   124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
             +LVGNKVDKESER V+KKEGI+FAREYGCLF+ECSAKTRVNV+QCFEELVLKIL+TPSL 
Sbjct:   123 MLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLT 182

Query:   184 AEGSKGLKKNIFKQKPPEADAAASG-CC 210
             AEGS G KKNIFKQ P +  + +S  CC
Sbjct:   183 AEGSSGGKKNIFKQNPAQTTSTSSSYCC 210

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2831859 RABC2A "RAB GTPase homolog C2A" [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 144/207 (69%), Positives = 175/207 (84%)

Query:     4 SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
             SS+ Q  +D  FK+L+IGDSGVGKSSLL+SF S + E+L+PTIGVDFK+K + VGGK+LK
Sbjct:     3 SSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLK 62

Query:    64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
             L IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNL DVW KEI+LYSTNQ+C++
Sbjct:    63 LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQECVR 122

Query:   124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
             +LVGNKVD+ESER V+++EGI  A+E  C+F+ECSA+TR NV+QCFEEL LKI++ PSLL
Sbjct:   123 MLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPSLL 182

Query:   184 AEGSKGLKKNIFKQKPPEADAAASGCC 210
              EGS  +K+NI KQKP       SGCC
Sbjct:   183 EEGSSAVKRNILKQKPEHQTNTQSGCC 209

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0030742 "GTP-dependent protein binding" evidence=IPI

GO:0080115 "myosin XI tail binding" evidence=IPI

TAIR|locus:2085084 RABC2b "RAB GTPase homolog C2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 133/207 (64%), Positives = 166/207 (80%)

Query:     4 SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
             SS+ Q  +D  FK+L+IGDSGVGKSSLLLSF S + E+L+PTIGVDFK+K + V GK+LK
Sbjct:     3 SSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGKRLK 62

Query:    64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
             L IWDTAGQE+FRTLTSSY+RG+QGII+VYDVT+R+TF NL+D+WAKEI+LYSTN DCIK
Sbjct:    63 LTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDCIK 122

Query:   124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
             +LVGNKVD+ESER V+++EG+  A++  CLF ECSA+TR NV  CFEEL LKI++ PSLL
Sbjct:   123 MLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPSLL 182

Query:   184 AEGSKGLKKNIFKQKPPEADAAASGCC 210
              EGS  +K+       P+  A    CC
Sbjct:   183 EEGSSSVKRK------PDYRAHQGRCC 203

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q5ZLG1 RAB18 "Ras-related protein Rab-18" [Gallus gallus (taxid:9031)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 115/196 (58%), Positives = 138/196 (70%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +K+LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDKEN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNI 194
              R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L    S+     +
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESESQNKGVKL 187

Query:   195 FKQKPPEADAAASGCC 210
               ++      A  G C
Sbjct:   188 SNKEEGHGGGACGGYC 203

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

ZFIN|ZDB-GENE-040801-185 rab18b "RAB18B, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 113/196 (57%), Positives = 139/196 (70%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + + G + KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVT+RDTFT L + W  E++ Y T  D +K+LVGNK+DK++
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDKDN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNI 194
              R V + EG+ FAR++  LFIE SAKTR  VQ  FEELV KIL TP L     +     +
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWESSIQNHGVQL 187

Query:   195 FKQKPPEADAAASGCC 210
                  P+   A  G C
Sbjct:   188 -SDNEPQRQGACGGYC 202

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0001654 "eye development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|Q0IIG8 RAB18 "Ras-related protein Rab-18" [Bos taurus (taxid:9913)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 117/198 (59%), Positives = 143/198 (72%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL-AEG-SKGLKK 192
              R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L  +E  +KG+K 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK- 186

Query:   193 NIFKQKPPEADAAASGCC 210
              +  ++  +   A  G C
Sbjct:   187 -LTHREEGQGGGACGGYC 203

GO:0019003 "GDP binding" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0001654 "eye development" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q9NP72 RAB18 "Ras-related protein Rab-18" [Homo sapiens (taxid:9606)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 117/198 (59%), Positives = 143/198 (72%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL-AEG-SKGLKK 192
              R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L  +E  +KG+K 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK- 186

Query:   193 NIFKQKPPEADAAASGCC 210
              +  ++  +   A  G C
Sbjct:   187 -LSHREEGQGGGACGGYC 203

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=NAS

GO:0006897 "endocytosis" evidence=NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=NAS

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=NAS

UNIPROTKB|I3LC07 RAB18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 117/198 (59%), Positives = 143/198 (72%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL-AEG-SKGLKK 192
              R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L  +E  +KG+K 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK- 186

Query:   193 NIFKQKPPEADAAASGCC 210
              +  ++  +   A  G C
Sbjct:   187 -LTHREEGQGGGACGGYC 203

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q5R5H5 RAB18 "Ras-related protein Rab-18" [Pongo abelii (taxid:9601)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 117/198 (59%), Positives = 143/198 (72%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL-AEG-SKGLKK 192
              R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L  +E  +KG+K 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK- 186

Query:   193 NIFKQKPPEADAAASGCC 210
              +  ++  +   A  G C
Sbjct:   187 -LSHREEGQGGGACGGYC 203

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

MGI|MGI:102790 Rab18 "RAB18, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 117/198 (59%), Positives = 142/198 (71%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL-AEG-SKGLKK 192
              R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L  +E  +KG+K 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK- 186

Query:   193 NIFKQKPPEADAAASGCC 210
              +  ++      A  G C
Sbjct:   187 -LSHREESRGGGACGGYC 203

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05976	RB18A_LYMST	No assigned EC number	0.5517	0.9380	0.9752	N/A	no
Q5ZLG1	RAB18_CHICK	No assigned EC number	0.6388	0.8333	0.8495	yes	no
Q9TVU5	RAB1_THEPA	No assigned EC number	0.5087	0.8047	0.7681	yes	no
Q5EB77	RAB18_RAT	No assigned EC number	0.5736	0.9238	0.9417	yes	no
Q8MXS1	RAB18_CAEEL	No assigned EC number	0.5798	0.7904	0.8177	yes	no
Q0IIG8	RAB18_BOVIN	No assigned EC number	0.6508	0.7904	0.8058	yes	no
Q54GY8	RAB18_DICDI	No assigned EC number	0.5523	0.8047	0.8366	yes	no
P35293	RAB18_MOUSE	No assigned EC number	0.5736	0.9238	0.9417	yes	no
P36862	YPTV3_VOLCA	No assigned EC number	0.6312	0.8476	0.8768	N/A	no
Q4UB16	RAB1_THEAN	No assigned EC number	0.5087	0.8047	0.7681	yes	no
Q6DHC1	RB18B_DANRE	No assigned EC number	0.5837	0.9190	0.9414	yes	no
P22127	RAB10_DIPOM	No assigned EC number	0.5056	0.8190	0.86	N/A	no
Q9NP72	RAB18_HUMAN	No assigned EC number	0.6508	0.7904	0.8058	yes	no
O23657	RABC1_ARATH	No assigned EC number	0.8636	0.9428	0.9339	yes	no
Q5R5H5	RAB18_PONAB	No assigned EC number	0.6508	0.7904	0.8058	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014334001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (211 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-116
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-104
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	6e-91
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-80
pfam00071	162	pfam00071, Ras, Ras family	4e-78
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	9e-78
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-72
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-64
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-62
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	9e-59
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	6e-58
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-57
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-55
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	6e-54
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-53
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-52
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	5e-52
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	7e-52
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-50
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	8e-49
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-48
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-48
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-47
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	9e-47
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	2e-44
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	3e-44
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	7e-44
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-43
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-39
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-39
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-38
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-38
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-38
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	7e-36
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-35
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-35
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-35
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	5e-35
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-33
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-33
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	4e-33
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	4e-33
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-32
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	6e-32
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	8e-32
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	5e-31
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	7e-31
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	4e-30
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	6e-29
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	7e-29
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	7e-28
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-27
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-27
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-27
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-27
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-26
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-26
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-26
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	6e-26
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	8e-26
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-25
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	5e-25
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	4e-24
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	6e-24
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	9e-24
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-23
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-23
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-22
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-21
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-21
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	7e-21
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-20
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	4e-20
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-19
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	6e-19
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	7e-19
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	6e-18
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-16
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-16
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	7e-16
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	3e-14
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-14
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	4e-14
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-13
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-13
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	5e-13
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	8e-13
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	5e-12
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	1e-11
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-11
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-11
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	9e-11
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-10
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-10
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	3e-10
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	5e-10
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	5e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	6e-10
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-09
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	2e-09
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	2e-09
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	4e-08
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	2e-07
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	5e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	8e-06
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	9e-06
cd00880	161	cd00880, Era_like, E	6e-05
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	9e-05
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	1e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	3e-04
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	4e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	8e-04
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	0.001
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	0.003
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	0.003

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  329 bits (845), Expect = e-116
 Identities = 147/210 (70%), Positives = 176/210 (83%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           M SSS     +D  FK+L+IGDSGVGKSSLL+SF S + E+L+PTIGVDFK+K + VGGK
Sbjct: 1   MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 60

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           +LKL IWDTAGQERFRTLTSSYYR AQGII+VYDVTRR+TFTNLSDVW KE++LYSTNQD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQD 120

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           C+K+LVGNKVD+ESER V+++EG+  A+E+GCLF+ECSAKTR NV+QCFEEL LKI++ P
Sbjct: 121 CVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVP 180

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLL EGS  +K+NI KQKP        GCC
Sbjct: 181 SLLEEGSTAVKRNILKQKPEHQPPPNGGCC 210

Length = 211

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  296 bits (761), Expect = e-104
 Identities = 120/163 (73%), Positives = 136/163 (83%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IGDSGVGKSSLLL FT D F+E LS TIGVDFKVK V V GKK+KLAIWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLTSSYYRGAQG+I+VYDVTRRDTF NL D W  E+D YSTN D +K+LVGNK+DKE
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVGNKIDKE 119

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R VT++EG  FAR++  LFIE SAKTR+ VQQ FEELV KI
Sbjct: 120 N-REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  263 bits (675), Expect = 6e-91
 Identities = 91/166 (54%), Positives = 120/166 (72%), Gaps = 3/166 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FK+++IGDSGVGKSSLL  FT   F E    TIGVDFK K ++V GK++KL IWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR++TSSYYRGA G ++VYD+T R++F NL + W KE+  Y+ + + + +LVGNK D E
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLEN-WLKELREYA-SPNVVIMLVGNKSDLE 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
            +R V+++E   FA E+G  F E SAKT  NV++ FEEL  +IL  
Sbjct: 119 EQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  237 bits (607), Expect = 1e-80
 Identities = 91/160 (56%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FK+++IGDSGVGK+SLLL F  + F E    TIGVDFK K ++V GKK+KL IWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR++TSSYYRGA G I+VYDVT R++F NL   W  E+  Y+   +   +LVGNK D E
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDK-WLNELKEYA-PPNIPIILVGNKSDLE 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
            ER V+ +E   FA+E G LF E SAKT  NV + FE L 
Sbjct: 119 DERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  230 bits (590), Expect = 4e-78
 Identities = 89/164 (54%), Positives = 115/164 (70%), Gaps = 3/164 (1%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD GVGKSSLL+ FT + F EE  PTIGVDF  K ++V GK +KL IWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           FR L   YYRGAQG ++VYD+T RD+F N+   W +EI  ++   +   +LVGNK D E 
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKK-WLEEILRHADE-NVPIVLVGNKCDLED 118

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           +RVV+ +EG   A+E G  F+E SAKT  NV++ FEEL  +IL 
Sbjct: 119 QRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  230 bits (588), Expect = 9e-78
 Identities = 94/168 (55%), Positives = 125/168 (74%), Gaps = 3/168 (1%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           DYLFKLL+IGDSGVGKS LLL F+ D+F      TIG+DFK++ +++ GKK+KL IWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRT+T+SYYRGA GII+VYD+T   +F N+ + W + ID ++ ++D  ++LVGNK 
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKN-WMRNIDEHA-SEDVERMLVGNKC 118

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           D E +RVV+K+EG   AREYG  F+E SAK  +NV++ F  L   IL 
Sbjct: 119 DMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILK 166

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  216 bits (552), Expect = 2e-72
 Identities = 91/167 (54%), Positives = 116/167 (69%), Gaps = 3/167 (1%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           YLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y  +++  KLLVGNK D
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCD 118

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
              ++VV   E   FA E G  F+E SAK   NV++ F  +  +I  
Sbjct: 119 LTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKK 165

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  196 bits (501), Expect = 2e-64
 Identities = 78/166 (46%), Positives = 113/166 (68%), Gaps = 3/166 (1%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           DYLFK+++IGDSGVGKS+LL  FT + F   S  TIGV+F  + + + GK +K  IWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQER+R +TS+YYRGA G ++VYD+T++ TF N+ + W KE+  ++ + + + +LVGNK 
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENV-ERWLKELRDHA-DSNIVIMLVGNKS 118

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           D    R V  +E   FA + G  FIE SA    NV++ F++L+ +I
Sbjct: 119 DLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  190 bits (485), Expect = 4e-62
 Identities = 84/169 (49%), Positives = 118/169 (69%), Gaps = 3/169 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDT 69
           + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + + GK++KL IWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   +S +   I +L+GNK
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSNSNMTI-MLIGNK 118

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
            D ES R V+ +EG  FARE+G +F+E SAKT  NV++ F     +I D
Sbjct: 119 CDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  181 bits (463), Expect = 9e-59
 Identities = 71/164 (43%), Positives = 99/164 (60%), Gaps = 3/164 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GDS VGKSS++L F  + F E    TIG  F  + V++    +K  IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+R+L   YYRGA   I+VYD+T  ++F      W KE+  +    + +  L GNK D E
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKS-WVKELQEHG-PPNIVIALAGNKADLE 119

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           S+R V+ +E   +A E G LF+E SAKT  NV + F E+  K+ 
Sbjct: 120 SKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  179 bits (456), Expect = 6e-58
 Identities = 87/165 (52%), Positives = 110/165 (66%), Gaps = 3/165 (1%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + ++V G+K+KL IWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERFR +T SYYRGA G +MVYD+TRR T+ +LS       +L  TN + +  L+GNK D
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIFLIGNKAD 118

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            E++R VT +E   FA E G LF+ECSAKT  NV+  F E   KI
Sbjct: 119 LEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  179 bits (455), Expect = 3e-57
 Identities = 86/204 (42%), Positives = 124/204 (60%), Gaps = 8/204 (3%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIW 67
           +++D+LFKLL+IGDSGVGKSSLLL F  + F      TIGVDFK++ V++ G+++KL IW
Sbjct: 1   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIW 60

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLV 126
           DTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W +EI+    N D + K+LV
Sbjct: 61  DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKR-WLQEIE---QNCDDVCKVLV 116

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEG 186
           GNK D    +VV  ++   FA + G    E SAK  +NV++ F  +   +L         
Sbjct: 117 GNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAK--KDNL 174

Query: 187 SKGLKKNIFKQKPPEADAAASGCC 210
           +K  ++          ++     C
Sbjct: 175 AKQQQQQQNDVVKLPKNSKRKKRC 198

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  173 bits (440), Expect = 2e-55
 Identities = 76/163 (46%), Positives = 107/163 (65%), Gaps = 4/163 (2%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D+LFK+++IGDS VGK+ ++  F S  F E    TIGVDF +K +++ GK++KL IWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRT+T SYYR A G I+ YD+TRR +F ++   W +E++ Y    + + LL+GNK 
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPH-WIEEVEKY-GASNVVLLLIGNKC 118

Query: 131 DKESERVVTKKEGINFAREYGCLF-IECSAKTRVNVQQCFEEL 172
           D E +R V  +E    A  YG L  +E SAK   NV++ F  +
Sbjct: 119 DLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLM 161

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  171 bits (434), Expect = 6e-54
 Identities = 86/212 (40%), Positives = 128/212 (60%), Gaps = 15/212 (7%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTA 70
           Y F+L++IGDS VGKSSLL  FT   F E+S PT+GVDF  + +++  G ++KL +WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFR++T SYYR + G+++V+D+T R++F ++ D W +E   +      + +LVG+K 
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKC 119

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI---LDTPSLLAE-G 186
           D ES+R VT++E    A++ G  +IE SA+T  NV++ FE L  +I   +    L A  G
Sbjct: 120 DLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDG 179

Query: 187 SKGLKKNIFK--------QKPPEADAAASGCC 210
             G+K             + P  A    S CC
Sbjct: 180 WDGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  170 bits (432), Expect = 1e-53
 Identities = 79/168 (47%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDT 69
           + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + +  K +KL IWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   ++ N +   +L+GNK
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLIGNK 120

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            D    R V+ +EG  FA+E+G +F+E SAKT  NV++ F +   KI 
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIY 168

Length = 210

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  166 bits (422), Expect = 1e-52
 Identities = 72/170 (42%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIW 67
           +++D+LFK+++IG++GVGK+ L+  FT   F      TIGVDF +K V++ G+K+KL IW
Sbjct: 2   EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIW 61

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFR++T SYYR A  +I+ YD+T  ++F  L + W +EI+ Y+ N+  I +LVG
Sbjct: 62  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYANNK-VITILVG 119

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           NK+D    R V+++    F+      ++E SAK   NV++ F +L  +++
Sbjct: 120 NKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRLI 169

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  164 bits (417), Expect = 5e-52
 Identities = 79/163 (48%), Positives = 108/163 (66%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V+VGGK +KL IWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR++T SYYRGA G ++VYD+T R++F  L++ W  +    ++  D + +LVGNK D E
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTN-WLTDARTLAS-PDIVIILVGNKKDLE 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            +R VT  E   FA+E G LF+E SA T  NV++ F +    I
Sbjct: 119 DDREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  164 bits (417), Expect = 7e-52
 Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            KL+ +GD  VGK+S++  F  D F+     TIG+DF  K + V  K ++L +WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR+L  SY R +   ++VYD+T R +F N    W  ++       D I +LVGNK D  
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDK-WIDDVRD-ERGNDVIIVLVGNKTDLS 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            +R V+ +EG   A+E   +FIE SAK   NV+Q F+++   +
Sbjct: 119 DKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  160 bits (407), Expect = 2e-50
 Identities = 81/166 (48%), Positives = 111/166 (66%), Gaps = 3/166 (1%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           +FKLL+IG+S VGK+S L  +  D+F      T+G+DFKVK V    K++KL IWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           ER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + +LVGNK D 
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-ILVGNKCDM 118

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           E ERVV+ + G   A + G  F E SAK  +NV+Q FE LV  I D
Sbjct: 119 EDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  156 bits (397), Expect = 8e-49
 Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 5/160 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FK++++G+  VGK+SL+L +  + F E    T    F  K V++GGK++ LAIWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDK 132
           R+  L   YYR A G I+VYD+T  D+F  +   W KE  L     + I L +VGNK+D 
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKK-WIKE--LKQMRGNNISLVIVGNKIDL 117

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
           E +RVV+K E   +A+  G    E SAKT   +++ F  L
Sbjct: 118 ERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSL 157

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  157 bits (398), Expect = 1e-48
 Identities = 83/164 (50%), Positives = 119/164 (72%), Gaps = 4/164 (2%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++++IG  GVGK+SL+  FT D F E    T+GVDFK+K V++ GKK++L IWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y++ +D   LLVGNK+D E+
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELLLVGNKLDCET 119

Query: 135 ERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKIL 177
           +R +T+++G  FA++  G  F E SAK   NV + F +LV  IL
Sbjct: 120 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 163

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  156 bits (396), Expect = 2e-48
 Identities = 84/202 (41%), Positives = 122/202 (60%), Gaps = 17/202 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE--ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           FK++++GDSGVGK+ LL+ F    F       T+G+ F  K V V G K+KL IWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           ERFR++T +YYR A  ++++YDVT + +F N+   W  EI  Y+   D + +L+GNK D 
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIR-AWLTEILEYA-QSDVVIMLLGNKADM 118

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSK 188
             ERVV +++G   A+EYG  F+E SAKT +NV+  F    +EL  + ++ P    E   
Sbjct: 119 SGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPD---EPKF 175

Query: 189 GLKKNIFKQKPPEADAAASGCC 210
            ++  + KQK       +SGCC
Sbjct: 176 KIQDYVEKQK------KSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  153 bits (389), Expect = 1e-47
 Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 3/162 (1%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++G  GVGKS+L + F S  F EE  PTI  D   K + V G+   L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +   Y R   G I+VY +T R++F  + ++  ++I      +D   +LVGNK D E+
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIR-EQILRVKDKEDVPIVLVGNKCDLEN 118

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ER V+ +EG   A E+GC F+E SAKT +N+ + F  LV +I
Sbjct: 119 ERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  153 bits (387), Expect = 9e-47
 Identities = 75/169 (44%), Positives = 114/169 (67%), Gaps = 3/169 (1%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
            E+DYLFK+++IGDSGVGKS++L  FT + F  E   TIGV+F  + + V GK +K  IW
Sbjct: 7   HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQER+R +TS+YYRGA G ++VYD+T+R TF N+   W +E+  ++ + + + ++ G
Sbjct: 67  DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQR-WLRELRDHA-DSNIVIMMAG 124

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D    R V +++G   A + G  F+E SA    NV++ F+ ++L+I
Sbjct: 125 NKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEI 173

Length = 216

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  145 bits (366), Expect = 2e-44
 Identities = 74/164 (45%), Positives = 109/164 (66%), Gaps = 3/164 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           F+LL+IGDSGVGK+ LL  FT + F      TIGVDFK+K ++V G K+++ IWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R++T+T  YYR AQGI +VYD++   ++ ++   W  ++D Y+  +   K+L+GNK D+E
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMK-WVSDVDEYA-PEGVQKILIGNKADEE 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            +R V  ++G   A+EYG  F E SA T  N+++ F  L   +L
Sbjct: 119 QKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTELVL 162

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  144 bits (366), Expect = 3e-44
 Identities = 66/163 (40%), Positives = 99/163 (60%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F   +F ++  PTI  D   K +++ G+   L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            F  +   Y R  +G ++VY +T R +F  +     + + +   +   I +LVGNK D E
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI-VLVGNKCDLE 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           SERVV+ +EG   AR++GC F+E SAK RVNV + F +LV +I
Sbjct: 119 SERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  144 bits (365), Expect = 7e-44
 Identities = 64/163 (39%), Positives = 100/163 (61%), Gaps = 6/163 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K++++GDSGVGK+SL+  + +  F  +   TIG DF  K V V  + + L IWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
           RF++L  ++YRGA   ++VYDVT   +F +L D W  E  + ++ +D      +++GNK+
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPRDPENFPFVVLGNKI 119

Query: 131 DKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEEL 172
           D E +R V+ K+   + +  G + + E SAK  +NV Q FE +
Sbjct: 120 DLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETI 162

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  143 bits (362), Expect = 2e-43
 Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F   +F +E  PTI  D   K +++ G+   L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            F  +   Y R  +G ++VY +T R +F  ++    + + +   +   I +LVGNK D E
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPI-VLVGNKCDLE 120

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +ERVV+ +EG   AR++GC F+E SAK R+NV + F +LV +I
Sbjct: 121 NERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  135 bits (340), Expect = 1e-39
 Identities = 76/218 (34%), Positives = 113/218 (51%), Gaps = 20/218 (9%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           F   FK++++GD GVGK++LL     D F E   PTIG     K ++   + +KL +WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQE +R+L   YYRGA GI++VYD T R++   L++ W +E+   + +   I LLVGNK
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPI-LLVGNK 120

Query: 130 VDKESERVVTKKEGINFAREYGCL---------------FIECSAK--TRVNVQQCFEEL 172
           +D   E+  +++      RE   L                +E SAK  T  NV + F+EL
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           + K+L+    L   ++  +       P E  A AS  C
Sbjct: 181 LRKLLEEIEKLVLKNELRQL-DRLNNPIEQAALASFNC 217

Length = 219

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  133 bits (335), Expect = 2e-39
 Identities = 66/176 (37%), Positives = 106/176 (60%), Gaps = 16/176 (9%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYV--------DVGGK- 60
           +DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V           GK 
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 61  -KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI--DLYST 117
            ++ L +WDTAGQERFR+LT++++R A G ++++D+T   +F N+ + W  ++    Y  
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRN-WMSQLQAHAYCE 119

Query: 118 NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           N D +  L+GNK D   +R V++++    A +YG  + E SA T  NV++  E L+
Sbjct: 120 NPDIV--LIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLL 173

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  131 bits (330), Expect = 1e-38
 Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 3/148 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FK+++IGDS VGK+ L   F +  F E    TIGVDF+ + V++ G+++K+ +WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 74  RFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           RFR ++   YYR    ++ VYDVT   +F +L   W +E + +S   +  ++LVGNK D 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDL 121

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAK 160
             +  V       FA  +     E SAK
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAK 149

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  129 bits (327), Expect = 3e-38
 Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 16/171 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GD  VGK+ LL+S+T++ F  E  PT+  D     V V GK++ L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y      ++ + V    +F N+   W  EI  Y    +   +LVG K+D   
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHY--CPNVPIILVGTKIDLRD 118

Query: 132 --------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
                   ++ ++ +T +EG   A+E G + ++ECSA T+  +++ F+E +
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAI 169

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  130 bits (329), Expect = 3e-38
 Identities = 69/203 (33%), Positives = 107/203 (52%), Gaps = 9/203 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQ 72
           FK+L+IGD GVGK+S++  +    F +    TIGVDF +K ++      ++L +WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEID---LYSTNQDCIKLLVGNK 129
           ERF  +T  YY+GA G I+V+DVTR  TF      W  ++D        +    LL+ NK
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEA-VLKWKADLDSKVTLPNGEPIPALLLANK 119

Query: 130 VDKESERVVTKKEGIN-FAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTPSLLAEGS 187
            D + ER+    E ++ F +E G + + E SAK  +N+++    LV  IL     L +  
Sbjct: 120 CDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGL-QSP 178

Query: 188 KGLKKNIFKQKPPEADAAASGCC 210
           +  + N+   K     + +  CC
Sbjct: 179 EPDEDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  123 bits (310), Expect = 7e-36
 Identities = 68/163 (41%), Positives = 104/163 (63%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F E+  PTI   ++ K V+V G++  L I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG ++VY +T + TF +L D+  + + +  T +D   +LVGNK D E
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 119

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV K++G N AR++GC F+E SAK ++NV + F +LV +I
Sbjct: 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  123 bits (311), Expect = 1e-35
 Identities = 68/172 (39%), Positives = 101/172 (58%), Gaps = 8/172 (4%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLA 65
           + +DYL K L++GDS VGK  +L S    + E  SP    +G+D+K   + + G+++KL 
Sbjct: 1   KAYDYLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQ 58

Query: 66  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL 125
           +WDT+GQ RF T+  SY RGAQGII+VYD+T R +F  + D W KEID ++      K+L
Sbjct: 59  LWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPG--VPKIL 115

Query: 126 VGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           VGN++    +R V  ++   +A   G  F E S     N+ + F EL   +L
Sbjct: 116 VGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVL 167

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  123 bits (309), Expect = 1e-35
 Identities = 66/165 (40%), Positives = 99/165 (60%), Gaps = 7/165 (4%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GD GVGKSSL+  + ++ F+  L  TIGV+F  K ++V G  + L IWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERFR+L + +YRG+   ++ + V    +F NLS  W KE   Y+  ++      +++GNK
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNK 123

Query: 130 VDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
           +D   ER V+ +E   + R+ G   + E SAK   NV   FEE V
Sbjct: 124 IDIP-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 167

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  122 bits (308), Expect = 2e-35
 Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 6/168 (3%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++ +G+SGVGKS ++  +    F  +  PTIG+D+ VK V V  K++++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ----DCIKLLVGNKV 130
           +  + + +Y+  QG+++VYDVT R +F  L D W KE+           + + ++  NK+
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           D    R V++ EG  +A   G  + E SA T   V + F+ L   I+D
Sbjct: 121 DLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIVD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  121 bits (305), Expect = 5e-35
 Identities = 63/167 (37%), Positives = 93/167 (55%), Gaps = 17/167 (10%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F  +  PTI  D   K  ++ G+  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAGQE 61

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-------LLV 126
            F  +   Y R  +G ++V+ VT R +F        +E+D + T    +K       +LV
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSF--------EEVDKFHTQILRVKDRDEFPMILV 113

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           GNK D E +R V+++EG   AR+    +IE SAK RVNV + F +LV
Sbjct: 114 GNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLV 160

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  118 bits (296), Expect = 2e-33
 Identities = 65/164 (39%), Positives = 95/164 (57%), Gaps = 5/164 (3%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD GVGK++L +    ++F E   PTI   ++ K V V G+   L + DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEE 59

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY--STNQDCIKLLVGNKVDK 132
           +  L   + R  +G I+VY +T R TF  + + + ++I      +  D   ++VGNK DK
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDK 118

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             ER V+ +EG   AR  GC FIE SAKT VNV++ F  LV  +
Sbjct: 119 VYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  116 bits (292), Expect = 3e-33
 Identities = 66/164 (40%), Positives = 103/164 (62%), Gaps = 4/164 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F ++  PTI  D   K ++V  ++  L I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG  +VY +T + +F +L D+  + + +  T +D   +LVGNK D E
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 119

Query: 134 SERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV+K+EG N AR++G C F+E SAK+++NV + F +LV +I
Sbjct: 120 DERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  116 bits (293), Expect = 4e-33
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 17/172 (9%)

Query: 20  IGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78
           +GD  VGK+ LL+ +T++ F E+  PT+  ++    V+V GK ++L +WDTAGQE +  L
Sbjct: 4   VGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSAD-VEVDGKPVELGLWDTAGQEDYDRL 62

Query: 79  TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD------- 131
               Y      ++ + V    +F N+ + W  E+  +  N   I  LVG K+D       
Sbjct: 63  RPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPII--LVGTKLDLRNDKST 120

Query: 132 -----KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
                K+ +  VT ++G   A+  G + ++ECSA T+  V++ FEE +   L
Sbjct: 121 LEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  116 bits (292), Expect = 4e-33
 Identities = 63/164 (38%), Positives = 95/164 (57%), Gaps = 3/164 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +K++++G  GVGKS+L + F S  F E+  PTI  DF  K ++V      L I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F ++   Y +  QG I+VY +  + TF ++  +   +I      +    +LVGNKVD E
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPM-RDQIVRVKGYEKVPIILVGNKVDLE 119

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           SER V+  EG   A E+GC F+E SAK++  V + F E+V ++ 
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQMN 163

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  114 bits (287), Expect = 2e-32
 Identities = 63/164 (38%), Positives = 100/164 (60%), Gaps = 5/164 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K++M+G  GVGKS+L L F  D F E+  PT   D   K V + G++++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDK 132
            +  +  +Y+R  +G ++V+ +T  ++FT L++   + + +     D + L LVGNK D 
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRV--KEDDNVPLLLVGNKCDL 117

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++G  ++E SAKTR NV + F +LV +I
Sbjct: 118 EDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  114 bits (286), Expect = 6e-32
 Identities = 68/198 (34%), Positives = 104/198 (52%), Gaps = 19/198 (9%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F  ++F +E  PTI   ++ K   +  +   L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDK 132
            +  +   Y R  QG + VY +T R +F  ++    +E  L   ++D + + LVGNK D 
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASF--REQILRVKDKDRVPMILVGNKCDL 122

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKK 192
           +SER V+  EG   A+ +G  F+E SAK RVNV + F ELV +I              +K
Sbjct: 123 DSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI--------------RK 168

Query: 193 NIFKQKPPEADAAASGCC 210
            + +  P +      G C
Sbjct: 169 YLKEDMPSQKQKKKGGLC 186

Length = 189

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  113 bits (285), Expect = 8e-32
 Identities = 65/176 (36%), Positives = 94/176 (53%), Gaps = 5/176 (2%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++G   VGKSSL + F   +F E   PTI   F  K +   G++  L I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS-KIITYKGQEYHLEIVDTAGQDE 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L   Y  G  G I+VY VT R +F  +  ++ K +D+       I +LVGNK D   
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPI-VLVGNKSDLHM 120

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI--LDTPSLLAEGSK 188
           ER V+ +EG   A  +G  F+E SAK   NV++ FE L+ +I  ++ P    + SK
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKVENPLPPGQKSK 176

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  111 bits (278), Expect = 5e-31
 Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +K++M+G  GVGKS++ + F S +F +   PTI   +K +   +  +   L I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQA 61

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            F  +   Y R  +G I+ Y VT R +F   S+ + + I      +D   +LVGNKVD E
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASE-FKELITRVRLTEDIPLVLVGNKVDLE 120

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            +R VT +EG N ARE+ C F E SA  R  +   F  LV +I
Sbjct: 121 QQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREI 163

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  110 bits (277), Expect = 7e-31
 Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 4/163 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI  D   K V + G+   L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +  R +F ++   + ++I     + D   +LVGNK D  
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIH-TYREQIKRVKDSDDVPMVLVGNKCDLA 119

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V+ ++G + A+ YG  +IE SAKTR  V++ F  LV +I
Sbjct: 120 A-RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  109 bits (275), Expect = 4e-30
 Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 22/179 (12%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D   K++++GD G GK+ LL+ +   +F EE  PT+  ++        GK ++LA+WDTA
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVG 127
           GQE +  L    Y     I++ Y V    +  N+ D W  E+     N  C     +LVG
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEV-----NHFCPGTPIVLVG 115

Query: 128 NKVD--KESERV----------VTKKEGINFAREYGC-LFIECSAKTRVNVQQCFEELV 173
            K D  K+   V          VT ++G + A+  G   +IECSAK   NV + F+  +
Sbjct: 116 LKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAI 174

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  105 bits (265), Expect = 6e-29
 Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 8/170 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVD-FKVKYVDVGGKKLKLAIWDTAGQ 72
           FKL+++GD G GK++ +    +  FE +   T+GV+   + +    GK ++  +WDTAGQ
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGK-IRFNVWDTAGQ 59

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E+F  L   YY   Q  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD 
Sbjct: 60  EKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 116

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           +  +V  K + I F R+    + E SAK+  N ++ F  L  K+L  P+L
Sbjct: 117 KDRKV--KPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNL 164

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  105 bits (263), Expect = 7e-29
 Identities = 61/158 (38%), Positives = 88/158 (55%), Gaps = 9/158 (5%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           K++++GDS VGKS L+  F  D +E   LS      +K       GK + +  WDTAGQE
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAK-FEGKTILVDFWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RF+T+ +SYY  A   I+V+DVTR+ T+ NLS  W +E+  Y     CI  +V NK+D +
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSK-WYEELREYRPEIPCI--VVANKIDLD 117

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171
               VT+K   NFA ++       SA    NV + F++
Sbjct: 118 PS--VTQK-KFNFAEKHNLPLYYVSAADGTNVVKLFQD 152

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  103 bits (259), Expect = 7e-28
 Identities = 64/201 (31%), Positives = 91/201 (45%), Gaps = 15/201 (7%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           K++M+G   VGK+SL+  +    F       TIG  F  K + VG + + L IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
           R+  ++  YYRGA+  I+ YD+T   +F      W KE  L +  + C   L G K D  
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAK-FWVKE--LQNLEEHCKIYLCGTKSDLI 118

Query: 132 --KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKG 189
               S R V   +  +FA E      E S+KT  NV + F+++     D  S        
Sbjct: 119 EQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA---EDFVSRANNQMNT 175

Query: 190 LKKNIFKQKPPEADAAASGCC 210
            K     QK    ++    CC
Sbjct: 176 EKGVDLGQKK---NSYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  102 bits (255), Expect = 1e-27
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 6/163 (3%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVK--YVDVGGKKLKLAIWDTAGQ 72
           K++++G+  VGKSS++  F    F ++   TIGVDF  K  ++    + ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E F  +T +YYRGAQ  I+V+  T R++F  +   W ++++  +   D   +LV  K+D 
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIES-WKEKVE--AECGDIPMVLVQTKIDL 118

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
             + V+T +E    A+         S K   NV + FE L  K
Sbjct: 119 LDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  101 bits (254), Expect = 2e-27
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 11/165 (6%)

Query: 15  FKLLMIGDSGVGKSSLL--LSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
            K++++GD  VGKS+LL  L     +  E  P    ++    ++  GK  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK----LLVGN 128
           E +  +   YYR  +  + V+D+        L      E                +LVGN
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDI----VILVLDVEEILEKQTKEIIHHAESGVPIILVGN 117

Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           K+D    ++ T      FA+  G   I  SA+T  N+   F+ + 
Sbjct: 118 KIDLRDAKLKT-HVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 161

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  101 bits (253), Expect = 2e-27
 Identities = 52/164 (31%), Positives = 74/164 (45%), Gaps = 16/164 (9%)

Query: 20  IGDSGVGKSSLLLSFTSDNFEELS----PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           +G  GVGKSSLL +       E+S     T   D  VK +D G  KL   + DT G + F
Sbjct: 3   VGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLV--LVDTPGLDEF 60

Query: 76  -----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
                  L     RGA  I++V D T R++  +   +  + +           +LVGNK+
Sbjct: 61  GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP----IILVGNKI 116

Query: 131 DKESERVVTKKEGINF-AREYGCLFIECSAKTRVNVQQCFEELV 173
           D   ER V +   +   A+  G    E SAKT   V + FE+L+
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score =  101 bits (253), Expect = 3e-27
 Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +++++ G  GVGKSSL+L F    F E   PTI   ++ + +        L I DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN-QDCIKLLVGNKVDK 132
           +F  +           I+VY +T + +   L  ++    ++   N +    +LVGNK D+
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
              R V+  EG   AR + C F+E SAKT  NVQ+ F+EL+
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  100 bits (249), Expect = 1e-26
 Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 6/134 (4%)

Query: 45  TIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT 102
           TIG+DF  K  Y+D G  +L+L  WDTAGQERFR+L  SY R +   I+VYD+T R +F 
Sbjct: 12  TIGIDFLSKTLYLDEGPVRLQL--WDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFE 69

Query: 103 NLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162
           N +  W ++I L    +D I  LVGNK D    R VT +EG+  A+EY  +F E SAK  
Sbjct: 70  NTTK-WIQDI-LNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAG 127

Query: 163 VNVQQCFEELVLKI 176
            N++  F+++  K+
Sbjct: 128 HNIKVLFKKIAAKL 141

Length = 176

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  100 bits (251), Expect = 2e-26
 Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 6/169 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD GVGK++ +    +  FE +  PT+GV+            +   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY   Q  I+++DVT R T+ N+ + W +  D+    ++   +LVGNKVD +
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPN-WHR--DIVRVCENIPIVLVGNKVDVK 126

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +V  K   I F R+    + + SAK+  N ++ F  L  ++ + P+L
Sbjct: 127 DRQV--KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNL 173

Length = 215

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  100 bits (251), Expect = 2e-26
 Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 5/167 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQ 72
            K++++GD   GK+SL+  F  + F +    TIG+DF  + + + G   + L +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC--IKLLVGNKV 130
           +    +   Y  GAQ + +VYD+T   +F NL D W   +   +   +     +LVGNK 
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLED-WLSVVKKVNEESETKPKMVLVGNKT 119

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           D E  R VT ++   FA+E     I  SAKT   V  CF+ +  ++L
Sbjct: 120 DLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELL 166

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 97.9 bits (244), Expect = 6e-26
 Identities = 55/165 (33%), Positives = 101/165 (61%), Gaps = 4/165 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +K++++G  GVGKS+L + F  + F E   PTI   ++ K V++ G++  L I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG ++VY VT   +   L ++  + + +  ++   + +LVGNK D E
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPM-VLVGNKADLE 119

Query: 134 SERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            +R V++++G++ ++++G + F E SA+ R NV + F +LV +I+
Sbjct: 120 DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 99.1 bits (247), Expect = 8e-26
 Identities = 64/179 (35%), Positives = 98/179 (54%), Gaps = 11/179 (6%)

Query: 8   QQEFDY-LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVD--VGGKKLK 63
           QQ  DY  FKL+++GD G GK++ +    +  FE +  PTIGV+  V  +D      K++
Sbjct: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIR 63

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
              WDTAGQE+F  L   YY   Q  I+++DVT R T+ N+   W +  DL    ++   
Sbjct: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHR--DLCRVCENIPI 120

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           +L GNKVD ++ +V  K + + F R+    + E SAK+  N ++ F  L  K+   P+L
Sbjct: 121 VLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 177

Length = 219

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 97.7 bits (243), Expect = 3e-25
 Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 46/230 (20%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           K++++GD  VGK+SLL  +    F++   T+G  F +K          ++IWDTAG+E+F
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQ----WGPYNISIWDTAGREQF 57

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVD--- 131
             L S Y RGA  +I+ YDV+   +   L     + + L  T N+DC+  +VGNK+D   
Sbjct: 58  HGLGSMYCRGAAAVILTYDVSNVQSLEEL---EDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 132 ----------------KESERVVTKKEGINFARE---YGCL-----------FIECSAKT 161
                            E +R VT ++   F +    Y  L             E SAKT
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174

Query: 162 RVNVQQCFEELVLKILDTPSLLAEGSKGLKK-NIFKQKPPEADAAASGCC 210
             NV + FE L   +L  P +LA+ ++  +         P+   + S CC
Sbjct: 175 GYNVDELFEYLFNLVL--PLILAQRAEANRTQGTVNLPNPK--RSKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 95.7 bits (238), Expect = 5e-25
 Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 12/161 (7%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GD  VGK+ L+  F  D F++    TIGVDF+++  +V G    L +WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTN----LSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           F+ + S+YYRGAQ II+V+D+T   +  +    L D   KE D  S     +  LVG K 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDA-LKENDPSS----VLLFLVGTKK 116

Query: 131 DKES--ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           D  S  +  + +++ I  ARE    +   SA T  NV+  F
Sbjct: 117 DLSSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 93.3 bits (232), Expect = 4e-24
 Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 23/172 (13%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE- 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 61

Query: 74  --RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
             R R L+   Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 62  YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 116

Query: 132 ------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                       K  +  V  +EG   A + G   ++ECSAKT+  V++ FE
Sbjct: 117 LRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFE 168

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 92.6 bits (230), Expect = 6e-24
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF---EELSPTIGVDFKVKYV--DVGGKKLKLAIWDTA 70
           +  ++GD  VGKS+L+  F SD     +  + T G D  VK V        ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQE F  +  + +     + +VYDVT   +F N S  W   +  +S       +LVGNK 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSR-WINRVRTHSHGLHTPGVLVGNKC 120

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
           D    R V   +    A+     F E SAK  V  +  F  L
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 92.5 bits (230), Expect = 9e-24
 Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 17/173 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K +++GD  VGK+SL++S+T++ +  E  PT   +F V  V V GK ++L + DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG------- 127
           F  L    Y      ++ + V    +F N+S+ W  EI  ++     I  LVG       
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPII--LVGTQADLRT 118

Query: 128 -----NKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVL 174
                 ++ +  E+ V++      A + G C +IECSA T+ N+++ F+  +L
Sbjct: 119 DVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 92.5 bits (230), Expect = 1e-23
 Identities = 51/171 (29%), Positives = 92/171 (53%), Gaps = 9/171 (5%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++GD+ +GK+SL++ +    F EE   T+GV+F  K + + G ++  +IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +     + A  I+ ++D+TR+ T  ++ + W ++      N+  I +LVG K D  +
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKE-WYRQA--RGFNKTAIPILVGTKYDLFA 118

Query: 135 ERVVTKKEGI-NFAREYG----CLFIECSAKTRVNVQQCFEELVLKILDTP 180
           +    ++E I   AR+Y        I CS    +NVQ+ F+ ++ K+ D P
Sbjct: 119 DLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKVFDLP 169

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 91.6 bits (228), Expect = 2e-23
 Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 7/163 (4%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++G SGVGKS+L + F +  F  E  P +   +  + V + G+++ L I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYS-RQVTIDGEQVSLEIQDTPGQQQ 59

Query: 75  FRT--LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVD 131
                      R A G ++VY +T R +F  +S +    I         I  +LVGNK D
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQL-IREIKKRDGEIPVILVGNKAD 118

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVN-VQQCFEELV 173
               R V+ +EG   A E GCLF E SA      VQ  F EL 
Sbjct: 119 LLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELC 161

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 17/177 (9%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+ +D F EE  PT+   + V  V VGGK+  L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS-VTVGGKQYLLGLYDTAGQE 59

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + V    +F N+ + W  E+  Y+ N     LL+G ++D  
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN--VPYLLIGTQIDLR 117

Query: 134 ------------SERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKIL 177
                        E+ +T ++G   A+E G C ++ECSA T+  ++  F+E ++ IL
Sbjct: 118 DDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 87.4 bits (216), Expect = 2e-21
 Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 6/164 (3%)

Query: 20  IGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78
           +GD G GK++ +    +  FE+    T+GV+            ++  +WDTAGQE+F  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 79  TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 138
              YY   Q  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +  +V 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVKDRKV- 116

Query: 139 TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
            K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 117 -KAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 159

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 86.3 bits (214), Expect = 5e-21
 Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 6/162 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           ++++++GDSGVGKSSL   FT+  +E+ +    G D   + V V G++  L ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
               L  S  +     ++VY VT R +F   S++    I L    Q  D   +LVGNK D
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASEL---RIQLRRARQAEDIPIILVGNKSD 117

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
               R V+ +EG   A  + C FIE SA  + NV + FE +V
Sbjct: 118 LVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIV 159

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 84.6 bits (210), Expect = 7e-21
 Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 16/165 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G  G GK+++L            PTIG  F V+ V+   K +K  +WD  GQ++ 
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIPTIG--FNVETVEY--KNVKFTVWDVGGQDKI 56

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI--DLYSTNQ--DCIKLLVGNKVD 131
           R L   YY    G+I V D + R+         AK     L +  +      L++ NK D
Sbjct: 57  RPLWKHYYENTDGLIFVVDSSDRERI-----EEAKNELHKLLNEEELKGAPLLILANKQD 111

Query: 132 KE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
                +E  + +  G+   +        CSA T   + +  + L+
Sbjct: 112 LPGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLI 156

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 84.2 bits (208), Expect = 1e-20
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 17/176 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQED 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y      ++ + V    +F N+ + W  EI  +        LLVG ++D   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPF--LLVGTQIDLRD 119

Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
                    K  ++ +T + G   AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 120 DPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 83.4 bits (206), Expect = 4e-20
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 17/169 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDF-KVKYVDVGGKKLKLAIWDTAGQE 73
           K++++GD   GK+SLL  FT   F ++  PT+  ++    +VD  G  ++L++WDTAGQE
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVD--GLAVELSLWDTAGQE 59

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVD- 131
            F  L S  Y     I++ + V   D+  N+   W  EI     +   +KL LV  K D 
Sbjct: 60  EFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEI---RHHCPGVKLVLVALKCDL 116

Query: 132 --KESERVVTKK-----EGINFAREYG-CLFIECSAKTRVNVQQCFEEL 172
               +ER          EG+  A+    C ++ECSAK    V + F E 
Sbjct: 117 REPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEA 165

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 80.6 bits (199), Expect = 3e-19
 Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 17/172 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K +++GD  VGK+ LL+S+T++ F  E  PT+  D     V V GK + L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV---- 130
           +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+    
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLRD 119

Query: 131 DKES-ERVVTKK-------EGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
           DK++ E++  KK       +G+  A+E G + ++ECSA T+  ++  F+E +
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 171

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 79.9 bits (197), Expect = 6e-19
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 15/167 (8%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K + +GD  VGK+ +L+S+TS+ F  +  PT+  +F    V V G  + L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGNTVNLGLWDTAGQED 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L    YRGA   ++ + +  + ++ N+   W  E+  Y+     +  LVG K+D   
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIV--LVGTKLDLRD 119

Query: 135 ER----------VVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFE 170
           ++           +T  +G    ++ G   +IECS+KT+ NV+  F+
Sbjct: 120 DKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 166

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 80.3 bits (198), Expect = 7e-19
 Identities = 58/167 (34%), Positives = 81/167 (48%), Gaps = 15/167 (8%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+SLL  FT   F EE  PT+  ++ V    V GK ++LA+WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEE 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L    Y  A  I++ + +   D+  N+   W +E+  Y  N   I  LVG K D   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVI--LVGLKKDLRQ 119

Query: 135 E----------RVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
           E            V  ++    AR  G   ++ECSA T   V   FE
Sbjct: 120 EAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFE 166

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 77.7 bits (191), Expect = 6e-18
 Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 17/176 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K +++GD  VGK+ LL+ +T++ F +E  PT+  ++  +   V G+ + L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L +  Y      I+ + +    ++ N+   W  E+  +  N     LLVG K D   
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPI--LLVGTKKDLRN 121

Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
                    ++ +  +T ++G   A++   + ++ECSA  +  V++ F E V  +L
Sbjct: 122 DADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 18/170 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GDS  GK++LL  F  D+F E   PT+  ++     +V  ++++L++WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTAS-FEVDKQRIELSLWDTSGSPY 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  +    Y  +  +++ +D++R +T  ++   W  E+  +  N     LLVG K D  +
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPV--LLVGCKSDLRT 119

Query: 135 E------------RVVTKKEGINFAREYGCL-FIECSAKT-RVNVQQCFE 170
           +              V+ ++G N A++ G   ++ECSAKT   +V+  FE
Sbjct: 120 DLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFE 169

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 73.3 bits (180), Expect = 3e-16
 Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 2/159 (1%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           +L+ +G +GVGK++L+  F  D FE        +   K  +V G K+ + I DT+G   F
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135
             +     +      +VY V   ++F  +  +  + +++       I ++VGNK+D  +E
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPI-VVVGNKIDSLAE 119

Query: 136 RVVTKKEGINFAR-EYGCLFIECSAKTRVNVQQCFEELV 173
           R V   + ++    ++   F+E SAK   NV + F+EL+
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELL 158

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 71.6 bits (176), Expect = 7e-16
 Identities = 52/169 (30%), Positives = 75/169 (44%), Gaps = 29/169 (17%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSP------TIGVDFKVKYVDVGGKKLKLAIWDT 69
           ++++IGD GVGKSSL++S  S+ F E  P      TI  D   + V          I DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPT-------TIVDT 56

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLV 126
           + + + R   ++  R A  I +VY V R  T   +   W   I      +  +K   +LV
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLI-----RRLGVKVPIILV 111

Query: 127 GNKVDKESERVVTKKEG--INFAREY----GCLFIECSAKTRVNVQQCF 169
           GNK D          E   +    E+     C  +ECSAKT +NV + F
Sbjct: 112 GNKSDLRDGSSQAGLEEEMLPIMNEFREIETC--VECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 67.8 bits (165), Expect = 3e-14
 Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 17/163 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GDS  GK++LL  F  D F E   PT+  ++   + ++  ++++L++WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 65

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D  +
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM--LLVGCKSDLRT 123

Query: 135 ERV------------VTKKEGINFAREYGCL-FIECSAKTRVN 164
           +              V+  +G N A++ G   +IECSA    N
Sbjct: 124 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 65.5 bits (160), Expect = 4e-14
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+++IGD G GKSSLL       F  E     G    V  ++V G    L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDV--WAKEIDLYSTNQDCIKLLVGNK 129
            +     + + A  I++VYD+T R++   +S +  W   +         I  LVGNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVI--LVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 67.2 bits (165), Expect = 4e-14
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 15/122 (12%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++L++G    GK+++L            PTIG  F V+ V    K +K  +WD  GQE 
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVTTIPTIG--FNVETVTY--KNVKFTVWDVGGQES 70

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS-----TNQDCIKLLVGNK 129
            R L  +Y+     +I V D   RD         AKE +L++        D   L++ NK
Sbjct: 71  LRPLWRNYFPNTDAVIFVVDSADRDRIEE-----AKE-ELHALLNEEELADAPLLILANK 124

Query: 130 VD 131
            D
Sbjct: 125 QD 126

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 23/158 (14%)

Query: 19  MIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT 77
           ++G    GK++L+    S  F E+  PT+G  F ++ V  G   +K  +WD  GQ RFR+
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 78  LTSSYYRGAQGIIMVYDVTRRDTF----TNLSDVWAKEIDLYSTNQDCIKLLV-GNKVDK 132
           +   Y RG   I+ V D   R+        L D+  K       + + I LLV GNK D 
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEK------PSLEGIPLLVLGNKNDL 113

Query: 133 E---SERVVTKKEGIN--FAREYGCLFIECSAKTRVNV 165
               S   + ++  +     RE  C  I  SAK + N+
Sbjct: 114 PGALSVDELIEQMNLKSITDREVSCYSI--SAKEKTNI 149

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 22/173 (12%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ- 72
           ++++++G S VGK++++  F    FEE  +PTI  DF  K   + G+  +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 73  -----ERFRTLTSSYYRGAQGIIMVYDVTRRDTFT-------NLSDVWAKEIDLYSTNQD 120
                 R   LT   +      I+V+ +  R++F         + +  +   +    N  
Sbjct: 60  PFPAMRRLSILTGDVF------ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVK 113

Query: 121 CIKLLVGNKVDKESERVVTKKEGINF-AREYGCLFIECSAKTRVNVQQCFEEL 172
              ++ GNK D++  R V + E       +  C + E SAK   N+ + F  L
Sbjct: 114 IPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRAL 166

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 66.4 bits (162), Expect = 5e-13
 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 15/111 (13%)

Query: 16  KLLMIGDSGVGKSSLL-LSFTSDNFEELSPTIGVDFKVKYVDVGG-------------KK 61
           ++L++GDSGVGKSSL+ L     +      TIG    VK++  G              + 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI 112
             + +WD +G ER++   S +Y    G+I V+D+++R T T+L   WA E+
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEV 132

Length = 334

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 64.7 bits (157), Expect = 8e-13
 Identities = 41/163 (25%), Positives = 86/163 (52%), Gaps = 17/163 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GD+  GK++LL  F  DN+ E   PT+  ++   + ++   +++L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASF-EIDKHRIELNMWDTSGSSY 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  +    Y  +  +++ +D++R +T  ++   W  E   +  N   +  LVG K+D  +
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLV--LVGCKLDMRT 119

Query: 135 ----------ERV--VTKKEGINFAREYGCL-FIECSAKTRVN 164
                     +R+  VT ++G   AR+ G + ++ECS++   N
Sbjct: 120 DLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSEN 162

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 61.6 bits (149), Expect = 5e-12
 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 11/119 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           +++ +G  G GK+++L     D F +  PTIG  F V+ V+   K LK  IWD  G+ + 
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIG--FNVETVEY--KNLKFTIWDVGGKHKL 56

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCIKLLVGNKVD 131
           R L   YY   Q ++ V D + RD  +      AK   E +L    +D + L+  NK D
Sbjct: 57  RPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKEL----RDALLLIFANKQD 111

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 29/148 (19%)

Query: 16  KLLMIGDSGVGKSSLL-LSFTSDNFEELSPTIGVDFKVKYVDVGG-----KKLKLAIWDT 69
           K+L++GDSGVGKSSL+ L   +      S T+G    V++   G      K   + +WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 70  AGQ----ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI---DLYS-----T 117
            G     E  ++  + +Y    GII V+D+T + +  NL   W+ E    D +      T
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYR-WSLEALNRDTFPAGLLVT 120

Query: 118 NQDCIK----------LLVGNKVDKESE 135
           N D             L++G K+D+  E
Sbjct: 121 NGDYDSEQFAGNPVPLLVIGTKLDQIPE 148

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +K++++G    GK+++L  F        SPTIG +  V+ +    K ++  +WD  GQE 
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN--VEEIVY--KNIRFLMWDIGGQES 71

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFT 102
            R+  ++YY     +I+V D T R+   
Sbjct: 72  LRSSWNTYYTNTDAVILVIDSTDRERLP 99

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L            PTIG  F V+ V    K +   +WD  GQ++ 
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESVTTIPTIG--FNVETVTY--KNISFTVWDVGGQDKI 70

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           R L   YY   QG+I V D   RD      +   + ++     +D + L+  NK D
Sbjct: 71  RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLN-EDELRDAVILVFANKQD 125

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 57.9 bits (140), Expect = 9e-11
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++ 
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKI 66

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-----NQDCIKLLVGNKV 130
           R L   YY G QG+I V D   RD         A++ +L+        +D + L+  NK 
Sbjct: 67  RPLWRHYYTGTQGLIFVVDSADRDRIDE-----ARQ-ELHRIINDREMRDALLLVFANKQ 120

Query: 131 D 131
           D
Sbjct: 121 D 121

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 15/157 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGV---DFKVKYVDVGGKKLKLAIWDTAG 71
           KL+++G  GVGK+SL      + F+     T G+   D+K+   +   KK++L +WD  G
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPE--RKKIRLNVWDFGG 60

Query: 72  QERFRTLTSSYYRGAQGI-IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           QE +   T  ++  ++ + ++V+D+   D  + +   W ++I  +      I  LVG  +
Sbjct: 61  QEIYHA-THQFFLTSRSLYLLVFDLRTGDEVSRV-PYWLRQIKAFGGVSPVI--LVGTHI 116

Query: 131 DKESERVVTKKEGIN---FAREYGCLFIECSAKTRVN 164
           D+  +  + KK  +N    A      F+ C     + 
Sbjct: 117 DESCDEDILKK-ALNKKFPAIINDIHFVSCKNGKGIA 152

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 22/171 (12%)

Query: 18  LMIGDSGVGKSSLL----LSFTSD----NFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           L++G    GK++ L      F+ +    N  +++PT+G++  +  ++VG  +L    WD 
Sbjct: 3   LILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLN--IGTIEVGKARLMF--WDL 58

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
            GQE  R+L   YY  + G+I V D T R+ F      + K I+     +    L++ NK
Sbjct: 59  GGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVIN-NEALEGVPLLVLANK 117

Query: 130 VDKES-------ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
            D          + V      +   R+  CL    SA     V++  E LV
Sbjct: 118 QDLPDALSVAEIKEVFDDCIALIGRRD--CLVQPVSALEGEGVEEGIEWLV 166

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 21/175 (12%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD----- 68
            ++ ++G  GVGK++++  F +  F EE  PT         V + G+   L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 69  ----TAGQE----RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL-YSTNQ 119
               TAGQE    RFR L     R ++  I+VYD+   D+F  +  +  + ++   + N+
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQCFEELV 173
           +   ++VGNK D++  R   +       R+ + C ++ECSAK   ++   F+EL+
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELL 170

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 56.0 bits (135), Expect = 5e-10
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L            PTIG  F V+ V+   K LK  +WD  GQ++ 
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEVVTTIPTIG--FNVETVEY--KNLKFTMWDVGGQDKL 74

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCIKLLVGNKVD- 131
           R L   YY+   G+I V D   R+   +  +   +   E +L    +D + L+  NK D 
Sbjct: 75  RPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDEL----RDAVLLVFANKQDL 130

Query: 132 --KESERVVTKKEGINFAREYGCLFIECSAKT 161
               S   VT+K G++  R+       C A T
Sbjct: 131 PNAMSTTEVTEKLGLHSVRQRNWYIQGCCATT 162

Length = 182

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 57.0 bits (137), Expect = 5e-10
 Identities = 43/187 (22%), Positives = 90/187 (48%), Gaps = 18/187 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+++L     D + E   PT+  ++    ++   ++++L++WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAC-LETEEQRVELSLWDTSGSPY 73

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R + F +    W  EI  Y  +     LL+G K D   
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRI--LLIGCKTDLRT 131

Query: 132 ---------KESERVVTKKEGINFAREYGC-LFIECSAKT-RVNVQQCFEELVLKILDTP 180
                     + +  ++ ++G   A++ G   ++ECSA T   ++   F    L  ++  
Sbjct: 132 DLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKL 191

Query: 181 SLLAEGS 187
           S LA+ S
Sbjct: 192 SPLAKKS 198

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 55.5 bits (134), Expect = 6e-10
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
          ++L++G    GKS+LL            PT+G  F V+ + +  K L L +WD  GQE+ 
Sbjct: 1  QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVG--FNVEMLQLE-KHLSLTVWDVGGQEKM 57

Query: 76 RTLTSSYYRGAQGIIMVYDVTRR 98
          RT+   Y     G++ V D +  
Sbjct: 58 RTVWKCYLENTDGLVYVVDSSDE 80

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQE 73
             ++M+G    GK+++L     + F    PT G + +   V +G  K +    WD  GQE
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE 63

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           + R L  SY R   GI+ V D    +     +     +I  +S NQ    L++ NK D
Sbjct: 64  KLRPLWKSYTRCTDGIVFVVDSVDVERMEE-AKTELHKITKFSENQGVPVLVLANKQD 120

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 54.6 bits (131), Expect = 2e-09
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 8/137 (5%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++ 
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD---K 132
           R L   Y++  QG+I V D   RD      D   + ++     +D + L+  NK D    
Sbjct: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNA 133

Query: 133 ESERVVTKKEGINFARE 149
            +   +T K G++  R+
Sbjct: 134 MNAAEITDKLGLHSLRQ 150

Length = 181

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 57

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCIKLLVGNKVD- 131
           R L   Y++  QG+I V D   R+      +   +   E +L    +D + L+  NK D 
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDEL----RDAVLLVFANKQDL 113

Query: 132 --KESERVVTKKEGINFARE 149
               S   VT K G++  R 
Sbjct: 114 PNAMSAAEVTDKLGLHSLRN 133

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++LM+G    GK+++L  F  ++   +SPT+G  F +K ++  G   KL IWD  GQ+ 
Sbjct: 15 MRILMLGLDNAGKTTILKKFNGEDISTISPTLG--FNIKTLEYNG--YKLNIWDVGGQKS 70

Query: 75 FRTLTSSYYRGAQGIIMVYDVTRR 98
           R+   +Y+     +I V D + R
Sbjct: 71 LRSYWRNYFESTDALIWVVDSSDR 94

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++L++G    GK+++L    S++   ++PT G  F +K V   G KL +  WD  GQ + 
Sbjct: 17  RILLLGLDNAGKTTILKQLASEDISHITPTQG--FNIKNVQADGFKLNV--WDIGGQRKI 72

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTF 101
           R    +Y+     +I V D   R  F
Sbjct: 73  RPYWRNYFENTDVLIYVIDSADRKRF 98

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
          ++L++G  G GK+++L            PTIG  F V+ V    K LK  +WD  GQ   
Sbjct: 1  RILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGQTSI 56

Query: 76 RTLTSSYYRGAQGIIMVYDVTRRD 99
          R     YY     II V D T RD
Sbjct: 57 RPYWRCYYSNTDAIIYVVDSTDRD 80

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 25/131 (19%)

Query: 16  KLLMIGDSGVGKSSLL------------LSFTSDNFEELSP-TIGVDF-KVKYVDVGGKK 61
           K+++IG  G GK++ +               +S + +   P T+ +DF  ++  +     
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE----D 67

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             + ++ T GQERF+ +     RGA G I++ D +R  TF       A+EI  + T+++ 
Sbjct: 68  TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFH------AEEIIDFLTSRNP 121

Query: 122 IKLLVG-NKVD 131
           I ++V  NK D
Sbjct: 122 IPVVVAINKQD 132

Length = 187

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 17/123 (13%)

Query: 17  LLMIGDSGVGKSSLL--LSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +L++G    GK++++  L  ++   + + PT+G  F V+    G   L    +D +GQ +
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFKKGN--LSFTAFDMSGQGK 57

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK------LLVGN 128
           +R L   YY+  QGII V D + R       D    E++L   + D IK      L   N
Sbjct: 58  YRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKD----ELELLLNHPD-IKHRRIPILFYAN 112

Query: 129 KVD 131
           K+D
Sbjct: 113 KMD 115

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 35/164 (21%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 20  IGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAG------Q 72
            G   VGKSSLL +    N   +SP  G        +        + + DT G       
Sbjct: 3   FGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEGGL 62

Query: 73  ERFRT-LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R R          A  +++V D           +  AK   L    +  +  LV NK+D
Sbjct: 63  GRERVEEARQVADRADLVLLVVDSDLT-----PVEEEAKLGLLRERGKPVL--LVLNKID 115

Query: 132 K--ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
              ESE     +E            I  SA     + +  +++ 
Sbjct: 116 LVPESEEEELLRERKLELL-PDLPVIAVSALPGEGIDELRKKIA 158

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 26/172 (15%)

Query: 19  MIGDSGVGKSSLLLSFTSDN-------FEELSPTIGV-----DFKVKYVDVGGKKLKLAI 66
           ++G   VGKS+LL + TS         F  L P +GV        ++ +D+ G      +
Sbjct: 2   LVGLPNVGKSTLLSALTSAKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPG------L 55

Query: 67  WDTAGQER--FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA--KEIDLYSTNQDCI 122
            D A + R     + +  YR    I+ V D +       L D     +E+          
Sbjct: 56  LDGASEGRGLGEQILAHLYRS-DLILHVIDASEDCVGDPLEDQKTLNEEVSGSFLFLKNK 114

Query: 123 KLLVG-NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
             ++  NK+D  SE  + + +     R      +  SA TR+ + +    + 
Sbjct: 115 PEMIVANKIDMASENNLKRLKLDKLKRGI--PVVPTSALTRLGLDRVIRTIR 164

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 30/135 (22%)

Query: 17  LLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGV--------DFKVKYVDVGGKKLKLAIW 67
           +L++G  G GK+SLL S +S+   E   PT G         D  ++ +++GG        
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGG-------- 53

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ---DCIKL 124
                +  R     Y  G+QG+I V D    +         A++ +L+   Q   D   +
Sbjct: 54  ----SQNLRKYWKRYLSGSQGLIFVVDSADSERLP-----LARQ-ELHQLLQHPPDLPLV 103

Query: 125 LVGNKVDKESERVVT 139
           ++ NK D  + R V 
Sbjct: 104 VLANKQDLPAARSVQ 118

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 43/171 (25%), Positives = 64/171 (37%), Gaps = 52/171 (30%)

Query: 15  FKLLMIGDSGVGKSSLLLSF--------------TSDNFEELSPTIGVDFKVKYVDVGGK 60
            K+++IG   VGKSSLL +               T D  EE             +++ G 
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEE------------DINLNGI 265

Query: 61  KLKLAIWDTAGQ-------ERF---RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK 110
            ++L   DTAG        ER    R   +     A  ++ V D ++     +L      
Sbjct: 266 PVRLV--DTAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDASQPLDKEDL-----A 316

Query: 111 EIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161
            I+L    +  I  +V NK D     +V+K E  +     G   I  SAKT
Sbjct: 317 LIELLPKKKPII--VVLNKAD-----LVSKIELESEKLANGDAIISISAKT 360

Length = 454

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 13/122 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           K++ +G    GK++LL     D   +  PT+      + + +G  K     +D  G E+ 
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLH--PTSEELTIGNVKFT--TFDLGGHEQA 76

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTN----LSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           R +   Y+    GI+ + D    + F      L  +   E        +   L++GNK+D
Sbjct: 77  RRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDE-----ELANVPILILGNKID 131

Query: 132 KE 133
           K 
Sbjct: 132 KP 133

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 12/165 (7%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           KL ++G+   GKS+L+  + + ++ +L    G  FK K V V G+   L I D  G    
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFK-KEVLVDGQSHLLLIRDEGGA--- 57

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135
               + +      +I V+ +    +F  +      ++  Y    +   +LVG + D  S 
Sbjct: 58  --PDAQFAGWVDAVIFVFSLEDEASFQTVYR-LYHQLSSYRNISEIPLILVGTQ-DAISA 113

Query: 136 ---RVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKI 176
              RV+          +   C + E  A   +NV++ F+E   KI
Sbjct: 114 SNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           +F   ++G  G GKS+LL +F   +F     SPTI   + V  V+V G++  L + +   
Sbjct: 4   VFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREVGE 63

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTF 101
            E    L  +         +VYD +  ++F
Sbjct: 64  DEEAILLNDAELAACDVACLVYDSSDPNSF 93

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 36.7 bits (86), Expect = 0.003
 Identities = 36/151 (23%), Positives = 52/151 (34%), Gaps = 40/151 (26%)

Query: 45  TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV-------TR 97
           TI    K+  V    KK  + I DT G   F          A G I+V D        TR
Sbjct: 53  TI----KIAAVSFETKKRLINIIDTPGHVDFTKEMIRGASQADGAILVVDAVEGVMPQTR 108

Query: 98  RDTFTNLSDVW--AKEIDLYSTNQDCIKLLVG-NKVDK----ESERVVTKKEGINFAREY 150
                        AK +         + ++V  NK+D+    E E VV ++       +Y
Sbjct: 109 E--------HLLLAKTLG--------VPIIVFINKIDRVDDAELEEVV-EEISRELLEKY 151

Query: 151 G-----CLFIECSAKTRVNVQQCFEELVLKI 176
           G        +  SA T   + +  E L L +
Sbjct: 152 GFGGETVPVVPGSALTGEGIDELLEALDLYL 182

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 44/145 (30%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSP--------TIGVDF-KVKYVDVGGKKLKLAI 66
           K+L++G  G GKSS+     S  F   SP        TI V+   V+++      L L +
Sbjct: 1   KVLLMGLRGSGKSSM----RSIIFSNYSPRDTLRLGATIDVEQSHVRFLG----NLTLNL 52

Query: 67  WDTAGQERFRTLTSSY-----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           WD  GQ+ F     +      +     +I V+DV  R+        + +++         
Sbjct: 53  WDCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE--------YEEDLATL---VKI 101

Query: 122 IKLLVGN-----------KVDKESE 135
           I+ L              K+D  SE
Sbjct: 102 IEALYQYSPNAKVFVLIHKMDLLSE 126

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.98
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.98
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
PTZ00099	176	rab6; Provisional	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.93
PRK15494	339	era GTPase Era; Provisional	99.93
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.91
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.9
PRK00089	292	era GTPase Era; Reviewed	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
KOG1673	205	consensus Ras GTPases [General function prediction	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
COG1159	298	Era GTPase [General function prediction only]	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.89
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.89
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.88
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.88
PRK12296	500	obgE GTPase CgtA; Reviewed	99.88
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.87
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.87
PRK11058	426	GTPase HflX; Provisional	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.86
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.86
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
PRK05306	787	infB translation initiation factor IF-2; Validated	99.85
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.85
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.84
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.84
PRK12317	425	elongation factor 1-alpha; Reviewed	99.84
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.83
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.83
COG1160	444	Predicted GTPases [General function prediction onl	99.83
COG0486	454	ThdF Predicted GTPase [General function prediction	99.83
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.83
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.82
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.82
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.82
PRK10218	607	GTP-binding protein; Provisional	99.81
COG2229	187	Predicted GTPase [General function prediction only	99.81
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.81
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.81
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.81
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.8
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.8
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.79
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.79
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.78
PRK04004	586	translation initiation factor IF-2; Validated	99.78
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.78
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.77
PRK12735	396	elongation factor Tu; Reviewed	99.76
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.76
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.76
COG0218	200	Predicted GTPase [General function prediction only	99.75
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.75
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.75
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.75
CHL00071	409	tufA elongation factor Tu	99.74
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.74
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.73
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.73
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.72
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.71
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.71
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.7
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.7
PRK00049	396	elongation factor Tu; Reviewed	99.7
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.7
PLN03126	478	Elongation factor Tu; Provisional	99.7
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.7
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.69
PLN00043	447	elongation factor 1-alpha; Provisional	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
PLN03127	447	Elongation factor Tu; Provisional	99.69
PTZ00141	446	elongation factor 1- alpha; Provisional	99.69
COG2262	411	HflX GTPases [General function prediction only]	99.68
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.68
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.68
PRK13351	687	elongation factor G; Reviewed	99.67
COG1084	346	Predicted GTPase [General function prediction only	99.66
COG1163	365	DRG Predicted GTPase [General function prediction	99.66
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.66
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.65
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.65
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.65
KOG1145	683	consensus Mitochondrial translation initiation fac	99.64
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.64
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.64
COG0536	369	Obg Predicted GTPase [General function prediction	99.63
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.61
PRK12739	691	elongation factor G; Reviewed	99.61
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.61
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.61
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.6
COG3596	296	Predicted GTPase [General function prediction only	99.6
PRK09602	396	translation-associated GTPase; Reviewed	99.58
PRK09866	741	hypothetical protein; Provisional	99.57
KOG0090	238	consensus Signal recognition particle receptor, be	99.56
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.54
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.53
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.53
PRK00007	693	elongation factor G; Reviewed	99.53
PRK12740	668	elongation factor G; Reviewed	99.53
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.52
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.52
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.51
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.5
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.48
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.48
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.47
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.46
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.45
PRK13768	253	GTPase; Provisional	99.45
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.45
PRK14845	1049	translation initiation factor IF-2; Provisional	99.45
PTZ00258	390	GTP-binding protein; Provisional	99.44
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.44
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.42
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.42
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.4
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.39
PTZ00416	836	elongation factor 2; Provisional	99.39
PRK07560	731	elongation factor EF-2; Reviewed	99.39
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.38
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.37
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.36
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.35
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.34
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.34
PRK09601	364	GTP-binding protein YchF; Reviewed	99.32
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.31
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.28
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.25
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.25
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.23
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.23
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.22
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.21
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.21
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.21
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.19
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.18
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.18
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.15
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.14
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.14
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.13
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.11
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.08
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.07
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.07
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.03
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.03
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.02
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.01
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.99
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.99
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.99
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.97
KOG0410	410	consensus Predicted GTP binding protein [General f	98.97
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.96
PRK00098	298	GTPase RsgA; Reviewed	98.96
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.95
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.93
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.91
PRK12289	352	GTPase RsgA; Reviewed	98.9
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.9
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.9
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.86
PRK12288	347	GTPase RsgA; Reviewed	98.85
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.84
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.84
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.83
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.83
COG1161	322	Predicted GTPases [General function prediction onl	98.81
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.8
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.79
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.73
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.7
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.7
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.68
KOG1143	591	consensus Predicted translation elongation factor	98.67
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.64
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.64
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.63
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.62
KOG2486	320	consensus Predicted GTPase [General function predi	98.62
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.59
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.58
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.58
PRK12288	347	GTPase RsgA; Reviewed	98.58
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.58
PRK12289	352	GTPase RsgA; Reviewed	98.57
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.54
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.53
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.5
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.48
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.48
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.46
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.46
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.46
KOG0460	449	consensus Mitochondrial translation elongation fac	98.45
PRK10416	318	signal recognition particle-docking protein FtsY;	98.45
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.42
PRK13796	365	GTPase YqeH; Provisional	98.41
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.39
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.39
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.39
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.38
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.37
PRK14974	336	cell division protein FtsY; Provisional	98.36
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.35
PRK01889	356	GTPase RsgA; Reviewed	98.34
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.33
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.33
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.32
cd03112	158	CobW_like The function of this protein family is u	98.3
PRK13796	365	GTPase YqeH; Provisional	98.27
PRK00098	298	GTPase RsgA; Reviewed	98.27
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.25
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.22
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.17
COG1162	301	Predicted GTPases [General function prediction onl	98.16
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.15
PRK13695	174	putative NTPase; Provisional	98.15
KOG2484	435	consensus GTPase [General function prediction only	98.14
COG0523	323	Putative GTPases (G3E family) [General function pr	98.09
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.01
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.0
COG1162	301	Predicted GTPases [General function prediction onl	97.98
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.98
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.95
cd03114	148	ArgK-like The function of this protein family is u	97.94
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.92
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.88
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.79
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.79
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.77
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.76
TIGR00959	428	ffh signal recognition particle protein. This mode	97.76
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.72
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.69
PRK10867	433	signal recognition particle protein; Provisional	97.69
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.65
COG3523	1188	IcmF Type VI protein secretion system component Va	97.65
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.65
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.65
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.63
PRK08118	167	topology modulation protein; Reviewed	97.62
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.62
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.61
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.61
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.59
PRK14737	186	gmk guanylate kinase; Provisional	97.57
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.57
PRK07261	171	topology modulation protein; Provisional	97.54
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.54
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.53
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.51
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.49
PRK14738	206	gmk guanylate kinase; Provisional	97.49
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.48
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.47
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.46
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.43
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.43
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.43
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.42
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.39
PRK04195	482	replication factor C large subunit; Provisional	97.37
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.36
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.35
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.35
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.31
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.29
PF00004	132	AAA: ATPase family associated with various cellula	97.29
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.26
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.24
PRK06217	183	hypothetical protein; Validated	97.24
PRK14530	215	adenylate kinase; Provisional	97.22
smart00382	148	AAA ATPases associated with a variety of cellular	97.22
PRK03839	180	putative kinase; Provisional	97.22
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.22
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.21
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.19
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.19
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.18
PRK01889	356	GTPase RsgA; Reviewed	97.18
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.15
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.13
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.13
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.13
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.13
PRK13949	169	shikimate kinase; Provisional	97.13
PRK14532	188	adenylate kinase; Provisional	97.12
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.1
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.1
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.08
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.08
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.07
PRK14531	183	adenylate kinase; Provisional	97.06
PTZ00088	229	adenylate kinase 1; Provisional	97.06
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.06
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.05
PRK00625	173	shikimate kinase; Provisional	97.03
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.03
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.03
PRK08233	182	hypothetical protein; Provisional	97.03
PRK05480	209	uridine/cytidine kinase; Provisional	97.03
PRK02496	184	adk adenylate kinase; Provisional	97.03
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.03
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.03
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.02
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.01
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.01
cd03111	106	CpaE_like This protein family consists of proteins	97.0
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.99
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.99
cd03110	179	Fer4_NifH_child This protein family's function is	96.99
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.99
PHA00729	226	NTP-binding motif containing protein	96.98
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.98
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.98
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.96
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.94
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.94
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.94
PLN02200	234	adenylate kinase family protein	96.93
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.92
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.92

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.1e-43  Score=243.65  Aligned_cols=199  Identities=49%  Similarity=0.843  Sum_probs=179.4

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ...++.|||+++|+.|||||+|+.|+..+.|.+.+. |.|.++....+.++++++++++|||+|++.++++...++++++
T Consensus         4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah   83 (205)
T KOG0084|consen    4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   83 (205)
T ss_pred             cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence            456899999999999999999999999999998887 9999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccCCCCCHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQ  166 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~  166 (210)
                      ++|+|||+++.+||+.+.. |+.++.+++ ..++|.++||||+|+.+.+.+..++++.++..++.+ ++++||+++.|++
T Consensus        84 Gii~vyDiT~~~SF~~v~~-Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe  161 (205)
T KOG0084|consen   84 GIIFVYDITKQESFNNVKR-WIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE  161 (205)
T ss_pred             eEEEEEEcccHHHhhhHHH-HHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence            9999999999999999999 999999876 556899999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028381          167 QCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      +.|..|...+.++......... ...+....+.++..+..++||
T Consensus       162 ~~F~~la~~lk~~~~~~~~~~~-~~~~~~ql~~~p~~~~~~~~C  204 (205)
T KOG0084|consen  162 DAFLTLAKELKQRKGLHVKWST-ASLESVQLKGTPVKKSNGGCC  204 (205)
T ss_pred             HHHHHHHHHHHHhcccCCCCCc-CCCCceeeCCCCcccccCCCC
Confidence            9999999999988888777664 223333333345556666788

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.3e-41  Score=228.48  Aligned_cols=201  Identities=68%  Similarity=1.083  Sum_probs=187.5

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ......+||+++|++|+|||+|+-++..+.|.+..+ +.|.++....+.+++.++++.+|||+|++.++.+...+++++.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            456788999999999999999999999999998888 7999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ++|+|||++.+++|..+.. |+.++..|..++++..++|+||+|.+..+.++.++...+++++++.++++||++.+|+..
T Consensus        86 GiIlVYDVT~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~  164 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC  164 (209)
T ss_pred             eeEEEEEccchhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence            9999999999999999966 999999999999999999999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028381          168 CFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      .|+.+++++++-+.+.+.++...+..+..+...+....-++||
T Consensus       165 ~FeelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~C  207 (209)
T KOG0080|consen  165 CFEELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCC  207 (209)
T ss_pred             HHHHHHHHHhcCcchhhccCCccccccccCCCcccccccCCcc
Confidence            9999999999999999999999888888755554445556687

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-40  Score=228.43  Aligned_cols=196  Identities=40%  Similarity=0.662  Sum_probs=170.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|+.++|||||+.|+..++|.+. .+|+|.-+....+.+++..+++.+|||+|++.|.++.+.++++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            4679999999999999999999999999886 459999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|||+++.+||..++. |...+.+... +++.+.+||||+|+.+.+.+..+++..++.+.+..++++||+++.|++++|.
T Consensus        83 vvYDit~~~SF~~aK~-WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~  160 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKN-WVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ  160 (200)
T ss_pred             EEEecccHHHHHHHHH-HHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence            9999999999999999 9999988654 7788889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028381          171 ELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       171 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      .|.+.+...............+.......+ ++....+||
T Consensus       161 ~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~C  199 (200)
T KOG0092|consen  161 AIAEKLPCSDPQERQGLPNRRQGVDLNSNQ-EPARPSGCC  199 (200)
T ss_pred             HHHHhccCccccccccccccccceecccCC-CCcCcCCcC
Confidence            999999887776654222211211111111 455677777

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.1e-39  Score=221.74  Aligned_cols=172  Identities=38%  Similarity=0.619  Sum_probs=160.3

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ...-+.+|++|+|+.++||||||.|++.+.|...|. |+|.++-...+.+.+.++++++|||+|++.+..+.+.+++++.
T Consensus        17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~   96 (221)
T KOG0094|consen   17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   96 (221)
T ss_pred             CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence            344566999999999999999999999999988776 9999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ++|+|||+++..||++..+ |+..+.......++.+++||||.||.+++.+..++....++++++.|+++||+.|.||..
T Consensus        97 vaviVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~  175 (221)
T KOG0094|consen   97 VAVIVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQ  175 (221)
T ss_pred             EEEEEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHH
Confidence            9999999999999999999 998888766555689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 028381          168 CFEELVLKILDTPS  181 (210)
Q Consensus       168 ~~~~l~~~~~~~~~  181 (210)
                      +|..|..++.....
T Consensus       176 lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  176 LFRRIAAALPGMEV  189 (221)
T ss_pred             HHHHHHHhccCccc
Confidence            99998888876654

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=2.2e-38  Score=232.56  Aligned_cols=195  Identities=34%  Similarity=0.585  Sum_probs=171.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +||+++|++|||||||+++|.++.+...+ ++.+.++....+.++ +..+.+.+||+||++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            58999999999999999999999886654 477777777777777 7889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhc---cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CeEEEEccCCCCCHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYS---TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQC  168 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~  168 (210)
                      ||++++++|+.+.. |...+....   ...++|++||+||.|+...+.+..+++..++...+ .+++++||++|.|++++
T Consensus        81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~  159 (201)
T cd04107          81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA  159 (201)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence            99999999999987 777776432   23578999999999997667778888999999998 68999999999999999


Q ss_pred             HHHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028381          169 FEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       169 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      |.++++.+.+............+.+....++..+.++.+|||
T Consensus       160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence            999999999998888888888777877777777888888999

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-38  Score=222.31  Aligned_cols=172  Identities=53%  Similarity=0.929  Sum_probs=163.0

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .+.++.+||+++|+++||||+|+.++..+.|...+. |.|.++....+.+++..+.+++|||+|++.+..+...++++++
T Consensus         7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~   86 (207)
T KOG0078|consen    7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM   86 (207)
T ss_pred             CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence            377899999999999999999999999999987777 9999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ++++|||+++..||+++.. |+..+..+. ..++|.++||||+|+...+.+..+.++.++.++|++++|+||++|.||++
T Consensus        87 gi~LvyDitne~Sfeni~~-W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e  164 (207)
T KOG0078|consen   87 GILLVYDITNEKSFENIRN-WIKNIDEHA-SDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE  164 (207)
T ss_pred             eeEEEEEccchHHHHHHHH-HHHHHHhhC-CCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence            9999999999999999999 999999875 44899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q 028381          168 CFEELVLKILDTPSL  182 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~  182 (210)
                      +|-.|.+.++++...
T Consensus       165 aF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  165 AFLSLARDILQKLED  179 (207)
T ss_pred             HHHHHHHHHHhhcch
Confidence            999999999874443

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=229.99  Aligned_cols=210  Identities=70%  Similarity=1.161  Sum_probs=186.2

Q ss_pred             CCCCcccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028381            1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus         1 ~~~~~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      |.+...+..+....+||+|+|++|||||||+++|.++.+....++.+.++....+.+++..+.+.+||+||++.+..++.
T Consensus         1 ~~~~~~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~   80 (211)
T PLN03118          1 MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTS   80 (211)
T ss_pred             CCcccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence            44555666677788999999999999999999999998877767888878777788888889999999999999999999


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (210)
                      .+++.+|++|+|||++++++|..+...|...+..+....+.|+++|+||+|+.....+..++...++...+++++++||+
T Consensus        81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk  160 (211)
T PLN03118         81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAK  160 (211)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCC
Confidence            99999999999999999999999988788777765555678999999999998777777788888888889999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028381          161 TRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      ++.|++++|.+|.+.+.+.+...+++....+++..++....++..+.+||
T Consensus       161 ~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (211)
T PLN03118        161 TRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEHQPPPNGGCC  210 (211)
T ss_pred             CCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccccccCCCCcCCCC
Confidence            99999999999999999999999899888899999998888888888887

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.7e-37  Score=226.74  Aligned_cols=194  Identities=43%  Similarity=0.739  Sum_probs=160.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +.|+++|+.|||||||++++..+.|...+. +.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            368999999999999999999999977654 8888888788888999999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCeEEEEccCCCCCHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      |++++++|+.+.. |+..+.... ..++|+++||||+|+...+.+..+++.+++... ++.+++|||++|.||+++|.++
T Consensus        81 Dvtd~~Sf~~l~~-w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l  158 (202)
T cd04120          81 DITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL  158 (202)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999987 888776642 457999999999999877888888888898875 7889999999999999999999


Q ss_pred             HHHHHcCCCcccccccCcccccc------cCCCCccCcccCCCC
Q 028381          173 VLKILDTPSLLAEGSKGLKKNIF------KQKPPEADAAASGCC  210 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  210 (210)
                      ++.+.+........++....-..      -....+.+..+.+||
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (202)
T cd04120         159 VDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC  202 (202)
T ss_pred             HHHHHHhCccccccccccchhhccCCCCCCCcCCCCCCCCcccC
Confidence            99998764443322222221111      112223467788998

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1e-36  Score=220.66  Aligned_cols=167  Identities=39%  Similarity=0.681  Sum_probs=150.3

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ..+.+||+++|+.|||||||+.++..+.+...+. +.+.++....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            4577999999999999999999999988866554 777777777788899999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      |+|||++++.+|+.+.. |+..+....  +++|++|||||.|+...+.+..++++.+++..++++++|||++|.||+++|
T Consensus        83 llVfD~t~~~Sf~~~~~-w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F  159 (189)
T cd04121          83 ILVYDITNRWSFDGIDR-WIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF  159 (189)
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            99999999999999987 888887643  579999999999998777888999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028381          170 EELVLKILDTP  180 (210)
Q Consensus       170 ~~l~~~~~~~~  180 (210)
                      .++.+.+..+.
T Consensus       160 ~~l~~~i~~~~  170 (189)
T cd04121         160 TELARIVLMRH  170 (189)
T ss_pred             HHHHHHHHHhc
Confidence            99999886533

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=4e-37  Score=211.54  Aligned_cols=172  Identities=38%  Similarity=0.668  Sum_probs=157.8

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      .+...+||+++|++|+|||||++++.+.+|...+. |+|.++-...+.+++..+-+++|||+|++.++++...+++++|.
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            34678999999999999999999999999988777 99999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCC---CCcEEEEEeCCCCCCC--ceecHHHHHHHHHHhC-CeEEEEccCCC
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ---DCIKLLVGNKVDKESE--RVVTKKEGINFAREYG-CLFIECSAKTR  162 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  162 (210)
                      .++|||.+++.+|+.+.. |..++..++...   ..|+||+|||+|++..  +.+....++.|+...| +|||++|||+.
T Consensus        85 Cvlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~  163 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA  163 (210)
T ss_pred             EEEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence            999999999999999999 888887665533   3799999999999663  7889999999999876 78999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCc
Q 028381          163 VNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~~~  182 (210)
                      .||++.|..+.+.++.....
T Consensus       164 ~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  164 TNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             ccHHHHHHHHHHHHHhccch
Confidence            99999999999999988875

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.3e-37  Score=210.65  Aligned_cols=169  Identities=49%  Similarity=0.866  Sum_probs=158.7

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ..+.+|++++|+.|||||+|+.+++...|.+.+. |.|.++....+.+++..+++++|||+|++.+.+....+++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            4678999999999999999999999999988877 999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|||+++.++|..+.. |+..++.+. ..+..++++|||+||...+.+..++++.|++++|..++++||+++.|++++|
T Consensus        83 lLVydit~r~sF~hL~~-wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF  160 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTS-WLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF  160 (216)
T ss_pred             EEEEEccchhhHHHHHH-HHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence            99999999999999999 999998754 6789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028381          170 EELVLKILDTPS  181 (210)
Q Consensus       170 ~~l~~~~~~~~~  181 (210)
                      ......+++..+
T Consensus       161 ~nta~~Iy~~~q  172 (216)
T KOG0098|consen  161 INTAKEIYRKIQ  172 (216)
T ss_pred             HHHHHHHHHHHH
Confidence            998887765443

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.6e-35  Score=216.97  Aligned_cols=196  Identities=44%  Similarity=0.768  Sum_probs=162.6

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .++.+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            346799999999999999999999999886544 4777777777778888889999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|||++++++|..+.. |+..+...  ....|++||+||+|+.....+..+++..++...+++++++||+++.|++++|
T Consensus        83 ilv~D~~~~~s~~~~~~-~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf  159 (199)
T cd04110          83 IVVYDVTNGESFVNVKR-WLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMF  159 (199)
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHH
Confidence            99999999999999987 77777653  3568999999999998777777888888998889999999999999999999


Q ss_pred             HHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028381          170 EELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      +++...+++....................+++. ++++.||
T Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  199 (199)
T cd04110         160 NCITELVLRAKKDNLAKQQQQQQNDVVKLPKNS-KRKKRCC  199 (199)
T ss_pred             HHHHHHHHHhhhccCcccccCCccccCccchhc-cccccCC
Confidence            999999987766554444444444444444433 4556677

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=5.3e-36  Score=217.94  Aligned_cols=182  Identities=34%  Similarity=0.522  Sum_probs=153.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++.++.+...+. +.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv   83 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV   83 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence            5899999999999999999999988865554 555444 45677888899999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      ||++++++|+.+.. |...+.......++|+++|+||.|+.....+..+++..++...+.+++++||+++.|++++|.++
T Consensus        84 ~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         84 YSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            99999999999988 77766655445689999999999997767777778888888889999999999999999999999


Q ss_pred             HHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028381          173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      ++.+.+..+..             .+++.+++++++||
T Consensus       163 ~~~l~~~~~~~-------------~~~~~~~~~~~~~~  187 (189)
T PTZ00369        163 VREIRKYLKED-------------MPSQKQKKKGGLCL  187 (189)
T ss_pred             HHHHHHHhhcc-------------chhhhhhccCCeee
Confidence            99986543211             34455566778887

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.3e-35  Score=216.27  Aligned_cols=189  Identities=41%  Similarity=0.771  Sum_probs=158.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +||+++|++|||||||++++.++.+..  ..++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988753  334677677666678888899999999999999988888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      +|+++.++++.+.. |+..+.... ..++|+++|+||.|+...+.+..+++..++...+++++++||++|.|++++|.++
T Consensus        81 ~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l  158 (191)
T cd04112          81 YDITNKASFDNIRA-WLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV  158 (191)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999988 887777643 3478999999999997666677778888888899999999999999999999999


Q ss_pred             HHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028381          173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      .+.+.+.... .......+.+.++.+.+    ++++||
T Consensus       159 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~  191 (191)
T cd04112         159 AKELKHRKYE-QPDEGKFKISDYVTKQK----KISRCC  191 (191)
T ss_pred             HHHHHHhccc-cCCCCcEEeccccCccc----ccCCCC
Confidence            9999888644 33333444555655555    888999

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.6e-37  Score=205.08  Aligned_cols=167  Identities=51%  Similarity=0.833  Sum_probs=157.2

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      -+..++.+|+|++|+|||+|+.++..+.|+..|. +.|.++....+.++|..+++.|||++|++.+..+...+++..+++
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            3456889999999999999999999999999888 999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|||.++.+||.++.. |+..++..  .+.+|-|+||||.|.++.+.+..++++.|+..+++.+|++|+++..|++.+|
T Consensus        85 ~vVYDVTn~ESF~Nv~r-WLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF  161 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKR-WLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF  161 (198)
T ss_pred             EEEEECcchhhhHhHHH-HHHHHHhc--CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence            99999999999999999 99999864  5579999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028381          170 EELVLKILDTP  180 (210)
Q Consensus       170 ~~l~~~~~~~~  180 (210)
                      .-|.+.+++..
T Consensus       162 ~cit~qvl~~k  172 (198)
T KOG0079|consen  162 HCITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHHH
Confidence            99988877654

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=8.8e-36  Score=220.04  Aligned_cols=187  Identities=33%  Similarity=0.538  Sum_probs=150.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|.+|||||||+++|..+.|....++.+..+....+    ..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            58999999999999999999999987666677766544433    56789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-------------------CceecHHHHHHHHHHhC----
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-------------------ERVVTKKEGINFAREYG----  151 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~----  151 (210)
                      ++++.+|..+..+|......  ...++|++||+||+|+..                   .+.+..+++..++.+.+    
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~--~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~  154 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDT--ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM  154 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence            99999999998855554432  245689999999999965                   56778889999999876    


Q ss_pred             ----------CeEEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028381          152 ----------CLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       152 ----------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                                ++|++|||++|.||+++|.++++.++.-......   .......-...++.+++|.+||
T Consensus       155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA---EANRTQGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh---hhhhhhccccCCCcccCCCCCC
Confidence                      6899999999999999999999988653332222   1122223334555688999999

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.3e-35  Score=216.05  Aligned_cols=185  Identities=35%  Similarity=0.543  Sum_probs=149.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      ||+++|.+|||||||+++|..+.+...+. +.+..+ .....+++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            68999999999999999999988876554 554333 4456678888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      +++..+|+.+.. |+..+.....  ..++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.++
T Consensus        80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l  158 (190)
T cd04144          80 ITSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL  158 (190)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999988 7666655332  2578999999999997777777777888888889999999999999999999999


Q ss_pred             HHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028381          173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      ++.+.++...-        .+....+...+.|++..||
T Consensus       159 ~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         159 VRALRQQRQGG--------QGPKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHHhhccc--------CCCcCCCCCcccccccCce
Confidence            99886555442        1223444444455555565

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=8.4e-35  Score=215.54  Aligned_cols=168  Identities=45%  Similarity=0.806  Sum_probs=149.8

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +.++.+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus         8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~   87 (216)
T PLN03110          8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG   87 (216)
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence            3557899999999999999999999998886544 588888888888889999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      +++|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        88 ~ilv~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~l  165 (216)
T PLN03110         88 ALLVYDITKRQTFDNVQR-WLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKA  165 (216)
T ss_pred             EEEEEECCChHHHHHHHH-HHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999887 887776643 457999999999999877778888889999889999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028381          169 FEELVLKILDT  179 (210)
Q Consensus       169 ~~~l~~~~~~~  179 (210)
                      |++++..+.+.
T Consensus       166 f~~l~~~i~~~  176 (216)
T PLN03110        166 FQTILLEIYHI  176 (216)
T ss_pred             HHHHHHHHHHH
Confidence            99999988774

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=3.8e-35  Score=210.26  Aligned_cols=165  Identities=38%  Similarity=0.597  Sum_probs=145.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++..+.+...+. +.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            4799999999999999999999999875544 555434 44577788899999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      ||++++.+|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..+++..++++++|||+++.||+++|.++
T Consensus        81 ~d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l  159 (172)
T cd04141          81 YSVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL  159 (172)
T ss_pred             EECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999987 77777665445679999999999998777788888999999999999999999999999999999


Q ss_pred             HHHHHcCC
Q 028381          173 VLKILDTP  180 (210)
Q Consensus       173 ~~~~~~~~  180 (210)
                      ++.+.+..
T Consensus       160 ~~~~~~~~  167 (172)
T cd04141         160 VREIRRKE  167 (172)
T ss_pred             HHHHHHhc
Confidence            99887644

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=9e-35  Score=207.37  Aligned_cols=163  Identities=53%  Similarity=0.877  Sum_probs=146.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++.++.+...++ +.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            5899999999999999999999998876665 777777777788889899999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      ||++++.+|+.+.. |+..+... ...+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.++
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l  159 (166)
T cd04122          82 YDITRRSTYNHLSS-WLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET  159 (166)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999988 77766553 34568999999999998877788888999999999999999999999999999999


Q ss_pred             HHHHHc
Q 028381          173 VLKILD  178 (210)
Q Consensus       173 ~~~~~~  178 (210)
                      .+.+++
T Consensus       160 ~~~~~~  165 (166)
T cd04122         160 AKKIYQ  165 (166)
T ss_pred             HHHHhh
Confidence            988865

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-35  Score=206.25  Aligned_cols=176  Identities=47%  Similarity=0.793  Sum_probs=163.7

Q ss_pred             cccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028381            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY   83 (210)
Q Consensus         5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   83 (210)
                      .......++.|||+++|++++|||-|+.|+..++|...+. |.|.++....+.++++.+..+||||+|++.|++....++
T Consensus         5 ~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYY   84 (222)
T KOG0087|consen    5 RDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYY   84 (222)
T ss_pred             cCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhh
Confidence            3455778999999999999999999999999999987776 999999999999999999999999999999999999999


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (210)
                      +++.++++|||++...+|+.+.. |+.+++.+. +.++++++||||+||...+.+..++++.++...+..++++||.++.
T Consensus        85 rgAvGAllVYDITr~~Tfenv~r-WL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~t  162 (222)
T KOG0087|consen   85 RGAVGALLVYDITRRQTFENVER-WLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDAT  162 (222)
T ss_pred             cccceeEEEEechhHHHHHHHHH-HHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccc
Confidence            99999999999999999999888 999999865 5689999999999999989999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCc
Q 028381          164 NVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~~  182 (210)
                      |++..|..++..+.+.-+.
T Consensus       163 NVe~aF~~~l~~I~~~vs~  181 (222)
T KOG0087|consen  163 NVEKAFERVLTEIYKIVSK  181 (222)
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            9999999999888765544

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.1e-34  Score=209.15  Aligned_cols=164  Identities=27%  Similarity=0.536  Sum_probs=143.2

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      +...+||+++|++|||||||++++..+.|...+. +.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            3567899999999999999999999999876654 666544 45678899999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-eEEE
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFIE  156 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~  156 (210)
                      ++|||++++.+|+.+...|...+....  ++.|+++||||.|+.+            .+.+..++++++++..++ +|++
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E  158 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  158 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEE
Confidence            999999999999998544988887753  5789999999999854            345888999999999996 8999


Q ss_pred             EccCCCCC-HHHHHHHHHHHHH
Q 028381          157 CSAKTRVN-VQQCFEELVLKIL  177 (210)
Q Consensus       157 ~Sa~~~~~-i~~~~~~l~~~~~  177 (210)
                      |||+++.| |+++|..+++.++
T Consensus       159 ~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         159 CSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCcCCCCCCHHHHHHHHHHHHh
Confidence            99999998 9999999998764

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-35  Score=196.19  Aligned_cols=176  Identities=48%  Similarity=0.832  Sum_probs=162.1

Q ss_pred             CcccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc
Q 028381            4 SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY   82 (210)
Q Consensus         4 ~~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   82 (210)
                      ..+..++.++.+|++++|...+|||+|+.++.+..|...+- +.|..+....+.-+..++.+++|||+|++.+..+...+
T Consensus        11 ~~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTay   90 (193)
T KOG0093|consen   11 KDSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAY   90 (193)
T ss_pred             cccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHH
Confidence            34556777899999999999999999999999999866554 99999999988888899999999999999999999999


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC
Q 028381           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (210)
                      +++++++|++||+++.+||..+.. |...+..+ ...+.|+|+|+||+|+++++.+..+.+++++..+|+.+|++||+.+
T Consensus        91 yRgamgfiLmyDitNeeSf~svqd-w~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~N  168 (193)
T KOG0093|consen   91 YRGAMGFILMYDITNEESFNSVQD-WITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKEN  168 (193)
T ss_pred             hhccceEEEEEecCCHHHHHHHHH-HHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccc
Confidence            999999999999999999999999 99999886 4678999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCC
Q 028381          163 VNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~~  181 (210)
                      .|++++|..+++.+-+..+
T Consensus       169 inVk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  169 INVKQVFERLVDIICDKMS  187 (193)
T ss_pred             ccHHHHHHHHHHHHHHHhh
Confidence            9999999999998865543

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.8e-34  Score=206.87  Aligned_cols=161  Identities=32%  Similarity=0.650  Sum_probs=140.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|+|||+|+.++..+.|...+ +|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            79999999999999999999999997655 4776555 455778899999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc----------eecHHHHHHHHHHhCC-eEEEEccCCC
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER----------VVTKKEGINFAREYGC-LFIECSAKTR  162 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  162 (210)
                      |+++++||+.+...|...+....  .++|++|||||+|+.+.+          .+..+++..+++..++ ++++|||+++
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~  158 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ  158 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence            99999999998544888887653  479999999999996542          4778899999999998 5999999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 028381          163 VNVQQCFEELVLKILD  178 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (210)
                      .||+++|..+++.+++
T Consensus       159 ~nV~~~F~~~~~~~~~  174 (176)
T cd04133         159 QNVKAVFDAAIKVVLQ  174 (176)
T ss_pred             cCHHHHHHHHHHHHhc
Confidence            9999999999998744

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=2.3e-34  Score=212.43  Aligned_cols=169  Identities=44%  Similarity=0.771  Sum_probs=147.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      +.+||+++|++|||||||+++|.++.+...+. +.+.++....+.+ ++..+.+.+||++|++.+...+..+++++|+++
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            35899999999999999999999998876554 7777777666666 467889999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|||++++.+|+.+.. |+..+.........|++||+||.|+.....+..+++..+++.++++++++||+++.|++++|.
T Consensus        81 lv~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~  159 (211)
T cd04111          81 LVFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFE  159 (211)
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999988 887776654445688999999999987777888888999999999999999999999999999


Q ss_pred             HHHHHHHcCCCc
Q 028381          171 ELVLKILDTPSL  182 (210)
Q Consensus       171 ~l~~~~~~~~~~  182 (210)
                      +|.+.+.+....
T Consensus       160 ~l~~~~~~~~~~  171 (211)
T cd04111         160 LLTQEIYERIKR  171 (211)
T ss_pred             HHHHHHHHHhhc
Confidence            999988766443

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=2.9e-34  Score=212.74  Aligned_cols=165  Identities=35%  Similarity=0.550  Sum_probs=144.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +||+++|++|||||||+++|.++.+...+. +.+.+++...+.+++ ..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            589999999999999999999998876554 888787777777754 578999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccC--CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTN--QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      ||++++++|+.+.. |...+......  .+.|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|+
T Consensus        81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~  159 (215)
T cd04109          81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ  159 (215)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            99999999999987 88888765432  4578999999999987777888888999999999999999999999999999


Q ss_pred             HHHHHHHcCC
Q 028381          171 ELVLKILDTP  180 (210)
Q Consensus       171 ~l~~~~~~~~  180 (210)
                      ++...+.+..
T Consensus       160 ~l~~~l~~~~  169 (215)
T cd04109         160 QLAAELLGVD  169 (215)
T ss_pred             HHHHHHHhcc
Confidence            9999998753

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=3.2e-34  Score=208.51  Aligned_cols=164  Identities=49%  Similarity=0.794  Sum_probs=145.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.++.+.. +.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            589999999999999999999999876 4457787777777888888999999999999999989999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |+++++++..+.. |+..+..+. ....|+++|+||.|+.+...+..+++..++...+++++++||+++.|++++|.+++
T Consensus        81 d~~~~~s~~~i~~-~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~  158 (188)
T cd04125          81 DVTDQESFENLKF-WINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV  158 (188)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999988 888777643 34589999999999987777778888888888899999999999999999999999


Q ss_pred             HHHHcCC
Q 028381          174 LKILDTP  180 (210)
Q Consensus       174 ~~~~~~~  180 (210)
                      +.+.++.
T Consensus       159 ~~~~~~~  165 (188)
T cd04125         159 KLIIKRL  165 (188)
T ss_pred             HHHHHHh
Confidence            9997654

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=2.6e-34  Score=207.57  Aligned_cols=167  Identities=38%  Similarity=0.714  Sum_probs=145.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC----------CeEEEEEEEeCCCccccccchh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG----------GKKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      ++.+||+++|++|||||||++++.++.+...+. +.+.++....+.+.          +..+.+.+||+||++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            367999999999999999999999998866544 77766665555543          4578999999999999999999


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (210)
                      .+++++|++++|||+++++++..+.. |+..+.......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak  160 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA  160 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            99999999999999999999999988 88888765555678999999999998777788888999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 028381          161 TRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~  179 (210)
                      ++.|++++|+++++.++++
T Consensus       161 ~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         161 TGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999988654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=3.9e-34  Score=205.82  Aligned_cols=161  Identities=25%  Similarity=0.544  Sum_probs=139.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++.++.|...+. +.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            3799999999999999999999998876554 665544 45677889999999999999999998889999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-eEEEEcc
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFIECSA  159 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa  159 (210)
                      ||+++++||+.+...|...+....  ++.|+++||||.|+.+            .+.+..+++.+++...++ +|++|||
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA  157 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSA  157 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECcc
Confidence            999999999997544988887753  5789999999999954            245788899999999997 7999999


Q ss_pred             CCCCC-HHHHHHHHHHHHH
Q 028381          160 KTRVN-VQQCFEELVLKIL  177 (210)
Q Consensus       160 ~~~~~-i~~~~~~l~~~~~  177 (210)
                      ++|.+ |+++|..+++..+
T Consensus       158 ~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         158 FTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCCcCHHHHHHHHHHHHh
Confidence            99995 9999999999665

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=7.7e-34  Score=210.83  Aligned_cols=167  Identities=23%  Similarity=0.489  Sum_probs=145.0

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +....+||+++|++|||||+|+++|..+.|...+. +.+..+ ...+.+++..+.+.||||+|++.+..++..+++++|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            34567999999999999999999999998876654 666555 4457889999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-eEE
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFI  155 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~  155 (210)
                      +|+|||++++.+|+.+...|...+....  ++.|+++||||+|+..            .+.+..+++++++...++ .|+
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~  165 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL  165 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence            9999999999999986444888887643  4689999999999864            256788899999999998 699


Q ss_pred             EEccCCCC-CHHHHHHHHHHHHHcC
Q 028381          156 ECSAKTRV-NVQQCFEELVLKILDT  179 (210)
Q Consensus       156 ~~Sa~~~~-~i~~~~~~l~~~~~~~  179 (210)
                      +|||++|. ||+++|..++..+++.
T Consensus       166 EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         166 ECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             EccCCcCCcCHHHHHHHHHHHHHHh
Confidence            99999998 8999999999988764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=5.2e-34  Score=207.66  Aligned_cols=162  Identities=28%  Similarity=0.537  Sum_probs=140.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+.++..+.|...+ ++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            489999999999999999999999986555 4666544 44567889999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhC-CeEEEEcc
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYG-CLFIECSA  159 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa  159 (210)
                      ||++++.+|+.+...|...+...  ..++|+++||||.|+.+..            .+..+++..++...+ .+++++||
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999976688777654  3579999999999996442            356678889999888 58999999


Q ss_pred             CCCCCHHHHHHHHHHHHHc
Q 028381          160 KTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (210)
                      ++|.|++++|.++++.+..
T Consensus       160 k~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998854

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=5.4e-34  Score=203.52  Aligned_cols=165  Identities=55%  Similarity=0.943  Sum_probs=146.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ++.+||+++|++|+|||||++++.++.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            357999999999999999999999998876544 7777777777788888899999999999998888889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|||++++.+|..+.. |+..+... ...++|+++|+||.|+.+...+..+++..++...+++++++||+++.|++++|.
T Consensus        81 ~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  158 (167)
T cd01867          81 LVYDITDEKSFENIRN-WMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFF  158 (167)
T ss_pred             EEEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999988 88888764 246789999999999987777777888889998999999999999999999999


Q ss_pred             HHHHHHHc
Q 028381          171 ELVLKILD  178 (210)
Q Consensus       171 ~l~~~~~~  178 (210)
                      ++.+.+.+
T Consensus       159 ~i~~~~~~  166 (167)
T cd01867         159 TLAKDIKK  166 (167)
T ss_pred             HHHHHHHh
Confidence            99998865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.7e-35  Score=197.12  Aligned_cols=204  Identities=34%  Similarity=0.625  Sum_probs=170.6

Q ss_pred             cccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028381            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY   83 (210)
Q Consensus         5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   83 (210)
                      +.+...+...||++++|...+|||||+-|++.++|..... +....+....+.+.+....+.+|||+|++.|.++-+.++
T Consensus         4 ~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYY   83 (218)
T KOG0088|consen    4 ETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYY   83 (218)
T ss_pred             cccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEE
Confidence            3455667889999999999999999999999999976554 777777788888899999999999999999999999999


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (210)
                      +..+++++|||++|++||+.++. |..+++... ...+.+++|+||+|+++++.+..++++.++..-|..|+++||+++.
T Consensus        84 RgSnGalLVyDITDrdSFqKVKn-WV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~  161 (218)
T KOG0088|consen   84 RGSNGALLVYDITDRDSFQKVKN-WVLELRTML-GNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNV  161 (218)
T ss_pred             eCCCceEEEEeccchHHHHHHHH-HHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheeccccccc
Confidence            99999999999999999999999 888887643 4457889999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCcccccc-----cCccc---ccccCCCCccCcccCCCC
Q 028381          164 NVQQCFEELVLKILDTPSLLAEGS-----KGLKK---NIFKQKPPEADAAASGCC  210 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~  210 (210)
                      ||.++|..+...+++..+.....-     .+...   ....+..++.+...++||
T Consensus       162 Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC  216 (218)
T KOG0088|consen  162 GISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEAEAERSGKRCC  216 (218)
T ss_pred             CHHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCcccccccCCcc
Confidence            999999999998887664433222     12211   123333445566667798

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.7e-33  Score=207.96  Aligned_cols=166  Identities=22%  Similarity=0.503  Sum_probs=142.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+|+|++|||||||+.+|..+.|+..+. +.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            799999999999999999999999876554 666554 356788999999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEEccC
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAK  160 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  160 (210)
                      |++++++|+.+...|...+...  ..++|+++||||+|+...            ..+..+++..+++..++ +|++|||+
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            9999999999977688777653  467999999999999542            13677889999999996 89999999


Q ss_pred             CCCC-HHHHHHHHHHHHHcCCCcc
Q 028381          161 TRVN-VQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       161 ~~~~-i~~~~~~l~~~~~~~~~~~  183 (210)
                      ++.+ |+++|..+..+.+.+....
T Consensus       159 ~~~~~V~~~F~~~~~~~~~~~~~~  182 (222)
T cd04173         159 SSERSVRDVFHVATVASLGRGHRQ  182 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHhccCCc
Confidence            9985 9999999999887755543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.1e-33  Score=201.75  Aligned_cols=163  Identities=32%  Similarity=0.601  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|+++.+...+. +.+.++....+..++..+.+++||+||++.+...+..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999998866554 7777777777888889999999999999988889999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccC----CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTN----QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      |++++.++..+.. |+..+......    .+.|+++|+||+|+........++...++...+++++++||+++.|++++|
T Consensus        81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  159 (168)
T cd04119          81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF  159 (168)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            9999999999887 88877765443    568999999999997666677888888888889999999999999999999


Q ss_pred             HHHHHHHHc
Q 028381          170 EELVLKILD  178 (210)
Q Consensus       170 ~~l~~~~~~  178 (210)
                      +++++.+++
T Consensus       160 ~~l~~~l~~  168 (168)
T cd04119         160 QTLFSSIVD  168 (168)
T ss_pred             HHHHHHHhC
Confidence            999998864

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1e-33  Score=201.12  Aligned_cols=160  Identities=39%  Similarity=0.680  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||++++..+.+...+. +.+ ..+...+.+++..+.+.+||+||++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            799999999999999999999988866554 443 444566778888899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |++++.+++.+.. |...+.......++|+++|+||+|+...+.+..++...++..++.+++++||+++.|++++|.+++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999888 777776655556799999999999977667777777888888889999999999999999999998


Q ss_pred             HHH
Q 028381          174 LKI  176 (210)
Q Consensus       174 ~~~  176 (210)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=1.4e-33  Score=204.95  Aligned_cols=166  Identities=30%  Similarity=0.536  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +||+++|++|||||||+++|.++.+...+. +.+..+. ..+... +..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999998876554 5554443 334444 6788999999999999998888899999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc----eecHHHHHHHHHHhCC-eEEEEccCCCCCHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER----VVTKKEGINFAREYGC-LFIECSAKTRVNVQQ  167 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~  167 (210)
                      ||++++.+|+.+...|+..+..+  ..++|+++|+||.|+....    .+..+++..++...+. +++++||++|.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  157 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEE  157 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence            99999999999976687777653  3578999999999985432    4567788899999988 899999999999999


Q ss_pred             HHHHHHHHHHcCCCcc
Q 028381          168 CFEELVLKILDTPSLL  183 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~~  183 (210)
                      +|..+++.+++.....
T Consensus       158 ~f~~l~~~~~~~~~~~  173 (187)
T cd04132         158 VFDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHHhhhhhh
Confidence            9999999997665443

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=2e-33  Score=200.33  Aligned_cols=163  Identities=56%  Similarity=0.928  Sum_probs=144.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            589999999999999999999998886654 3777777777778888889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      ||+++++++..+.. |+..+.... ..+.|+++|+||.|+.....+..+++..++...+++++++||++|.|++++|.++
T Consensus        82 ~d~~~~~s~~~l~~-~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  159 (166)
T cd01869          82 YDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM  159 (166)
T ss_pred             EECcCHHHHHhHHH-HHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence            99999999999988 888777643 3568999999999998777788888899999999999999999999999999999


Q ss_pred             HHHHHc
Q 028381          173 VLKILD  178 (210)
Q Consensus       173 ~~~~~~  178 (210)
                      ++.+.+
T Consensus       160 ~~~~~~  165 (166)
T cd01869         160 AREIKK  165 (166)
T ss_pred             HHHHHh
Confidence            998753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=2e-33  Score=199.94  Aligned_cols=162  Identities=41%  Similarity=0.680  Sum_probs=139.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++..+.+...++ +.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            3799999999999999999999888765544 555443 45677788889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      ||+++..+++.+.. |...+.......+.|+++|+||+|+.....+..+++..++...+++++++||+++.|++++|.++
T Consensus        80 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l  158 (164)
T cd04175          80 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL  158 (164)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            99999999999988 66666554455779999999999998777777777888888889999999999999999999999


Q ss_pred             HHHHH
Q 028381          173 VLKIL  177 (210)
Q Consensus       173 ~~~~~  177 (210)
                      ++.+.
T Consensus       159 ~~~l~  163 (164)
T cd04175         159 VRQIN  163 (164)
T ss_pred             HHHhh
Confidence            98764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=3.7e-33  Score=198.85  Aligned_cols=162  Identities=50%  Similarity=0.851  Sum_probs=142.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.++++...+ ++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999986654 47776776666777888899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |.+++++++.+.. |+..+.... ..+.|+++|+||+|+.+.+....++...++...+.+++++||+++.|++++|+++.
T Consensus        82 d~~~~~s~~~~~~-~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (165)
T cd01865          82 DITNEESFNAVQD-WSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV  159 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999988 888776532 34689999999999987777777888888888899999999999999999999999


Q ss_pred             HHHHc
Q 028381          174 LKILD  178 (210)
Q Consensus       174 ~~~~~  178 (210)
                      ..+.+
T Consensus       160 ~~~~~  164 (165)
T cd01865         160 DIICD  164 (165)
T ss_pred             HHHHh
Confidence            87643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=2.3e-33  Score=199.06  Aligned_cols=159  Identities=46%  Similarity=0.848  Sum_probs=141.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|+|||||++++..+.+...+ ++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999886654 47777777777888888899999999999999989999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |++++++|+.+.. |+..+.... ..+.|+++|+||.|+...+.+..+++..+++..+++++++||+++.|++++|.+|.
T Consensus        81 d~~~~~sf~~~~~-~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~  158 (161)
T cd04117          81 DISSERSYQHIMK-WVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT  158 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999988 888776543 34689999999999987777888899999998999999999999999999999998


Q ss_pred             HH
Q 028381          174 LK  175 (210)
Q Consensus       174 ~~  175 (210)
                      +.
T Consensus       159 ~~  160 (161)
T cd04117         159 EL  160 (161)
T ss_pred             hh
Confidence            65

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=2.6e-33  Score=201.26  Aligned_cols=160  Identities=30%  Similarity=0.559  Sum_probs=136.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++..+.|...+ ++.+..+. ..+.+++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            379999999999999999999999986544 46665553 4567788889999999999999999998899999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CeEEEEcc
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFIECSA  159 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa  159 (210)
                      ||++++++|+.+...|...+...  ..++|++||+||.|+...            +.+..+++..++...+ +.+++|||
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  157 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA  157 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence            99999999999976688888764  357899999999998543            4566778888988887 68999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 028381          160 KTRVNVQQCFEELVLKI  176 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~  176 (210)
                      ++|.|++++|+.+++..
T Consensus       158 ~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         158 LTQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998854

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.9e-33  Score=199.68  Aligned_cols=160  Identities=45%  Similarity=0.754  Sum_probs=148.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      ||+++|+++||||||+++|.++.+...+. +.+.+.....+.+++..+.+.+||++|++.+......+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999877665 77788888999999999999999999999999888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (210)
                      +++++|++.+.. |+..+..... .+.|++|||||.|+.+.+.+..++++.++..++.+|+++||+++.|+.++|..+++
T Consensus        81 ~~~~~S~~~~~~-~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~  158 (162)
T PF00071_consen   81 VTDEESFENLKK-WLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR  158 (162)
T ss_dssp             TTBHHHHHTHHH-HHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred             cccccccccccc-cccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999997 9999887654 56899999999999887889999999999999999999999999999999999999


Q ss_pred             HHH
Q 028381          175 KIL  177 (210)
Q Consensus       175 ~~~  177 (210)
                      .++
T Consensus       159 ~i~  161 (162)
T PF00071_consen  159 KIL  161 (162)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=9.3e-33  Score=201.61  Aligned_cols=163  Identities=34%  Similarity=0.580  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +||+|+|++|+|||||+++|.++.+..  +.++.+.++....+.+++..+.+.+||++|...+..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998864  445777777777788899999999999999999888888899999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC----ceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE----RVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      ||+++..+++.+.. |+..+...  ..++|+++|+||.|+...    ..+..+++..++...+++++++||+++.|++++
T Consensus        81 ~d~~~~~s~~~~~~-~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  157 (193)
T cd04118          81 YDLTDSSSFERAKF-WVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDEL  157 (193)
T ss_pred             EECCCHHHHHHHHH-HHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999877 88777653  347899999999998532    344556777888888899999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028381          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |+++.+.+.+..
T Consensus       158 ~~~i~~~~~~~~  169 (193)
T cd04118         158 FQKVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHHHhc
Confidence            999999997654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=6e-33  Score=201.83  Aligned_cols=163  Identities=31%  Similarity=0.510  Sum_probs=137.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .||+++|++|||||||+++|..+.+...+. +.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            389999999999999999999999876554 555444 345667888899999999999999888888999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhC-CeEEEEccC
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYG-CLFIECSAK  160 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~  160 (210)
                      |++++.+|+.+...|+..+...  ..+.|+++|+||+|+....            .+..+++..++...+ +++++|||+
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  157 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK  157 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence            9999999999876588887754  3578999999999996543            245666778887776 689999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCC
Q 028381          161 TRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~  180 (210)
                      +|.|++++|.++.+.++...
T Consensus       158 ~~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         158 LNRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             cCCCHHHHHHHHHHHHhccc
Confidence            99999999999999997444

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=6.4e-34  Score=192.03  Aligned_cols=170  Identities=45%  Similarity=0.792  Sum_probs=154.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .+.++++++|++-+|||+|+++++.+++++-+. |.|.+++...+.+ ++..+++++|||+|++.++++...++++.-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            578999999999999999999999999987665 9999888776665 77889999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCC-CcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD-CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      ++|||+++.+||+.+.. |..+...+...+. +.+.+||+|+|+...+.+..++++.++..+|..++++||++|.|+++.
T Consensus        86 llvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             EEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence            99999999999999999 9888887776454 455689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCc
Q 028381          169 FEELVLKILDTPSL  182 (210)
Q Consensus       169 ~~~l~~~~~~~~~~  182 (210)
                      |+.+.+.++....+
T Consensus       165 F~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  165 FDMLAQEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999987665444

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=6.3e-33  Score=205.78  Aligned_cols=165  Identities=33%  Similarity=0.530  Sum_probs=142.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||++++..+.+...+ ++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            77899999999999999999999988886654 48888888777777888899999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|||++++.++..+.. |+..+...  ..+.|+++||||+|+... .+..+++ .++...+++|++|||++|.|++++|.
T Consensus        91 lvfD~~~~~s~~~i~~-w~~~i~~~--~~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~  165 (219)
T PLN03071         91 IMFDVTARLTYKNVPT-WHRDLCRV--CENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFL  165 (219)
T ss_pred             EEEeCCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHH
Confidence            9999999999999987 88888764  357999999999998533 3334444 67777889999999999999999999


Q ss_pred             HHHHHHHcCCC
Q 028381          171 ELVLKILDTPS  181 (210)
Q Consensus       171 ~l~~~~~~~~~  181 (210)
                      ++++.+.+...
T Consensus       166 ~l~~~~~~~~~  176 (219)
T PLN03071        166 YLARKLAGDPN  176 (219)
T ss_pred             HHHHHHHcCcc
Confidence            99999976643

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=5.5e-33  Score=197.67  Aligned_cols=162  Identities=40%  Similarity=0.654  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||++++.++.+...+.....+.......+++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999998887655522233445566778888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (210)
                      ++++++++.+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+++++
T Consensus        81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            999999999988 6666655445567999999999999877777778888888888999999999999999999999998


Q ss_pred             HHH
Q 028381          175 KIL  177 (210)
Q Consensus       175 ~~~  177 (210)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=9.2e-33  Score=197.35  Aligned_cols=165  Identities=50%  Similarity=0.872  Sum_probs=146.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ++.+||+++|++|||||||++++.++.+...+. +.+.++....+..++....+.+||+||++.+...+..+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            356899999999999999999999988866554 7777777777888888899999999999999888889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|||++++.++..+.. |+..+..+. .++.|+++|+||.|+.....+..+++..++...+++++++||+++.|++++|.
T Consensus        82 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~  159 (168)
T cd01866          82 LVYDITRRETFNHLTS-WLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFI  159 (168)
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999988 888776643 46799999999999977777788888889998999999999999999999999


Q ss_pred             HHHHHHHc
Q 028381          171 ELVLKILD  178 (210)
Q Consensus       171 ~l~~~~~~  178 (210)
                      ++.+.+++
T Consensus       160 ~~~~~~~~  167 (168)
T cd01866         160 NTAKEIYE  167 (168)
T ss_pred             HHHHHHHh
Confidence            99998864

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=7.5e-33  Score=198.71  Aligned_cols=158  Identities=30%  Similarity=0.540  Sum_probs=135.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+.++..+.+...+. +.+ ..+...+.+++..+.+.+|||+|++.+...+..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            799999999999999999999998866554 554 334455677888999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEEccC
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAK  160 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  160 (210)
                      |++++++|..+...|...+...  ..++|+++|+||.|+.+.            ..+..+++..++.+++. ++++|||+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999976688877654  357999999999999543            24678888999999985 89999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028381          161 TRVNVQQCFEELVLK  175 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~  175 (210)
                      +|.|++++|..+.+.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=6.9e-33  Score=197.00  Aligned_cols=162  Identities=37%  Similarity=0.584  Sum_probs=138.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .+||+++|++|+|||||++++..+.+...+.+....+....+.+++..+.+.+||+||++.+..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            37999999999999999999999988766553333455667778888899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |++++.++.++.. |...+.......++|+++|+||+|+.....+..++...++...+++++++||+++.|++++|.++.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999988 766666544446799999999999976666666677888888889999999999999999999998


Q ss_pred             HHH
Q 028381          174 LKI  176 (210)
Q Consensus       174 ~~~  176 (210)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=2e-32  Score=202.01  Aligned_cols=166  Identities=48%  Similarity=0.845  Sum_probs=146.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      .+.+||+++|++|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999998886654 47777777777888888899999999999998888999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|||++++.++..+.. |+..+.... ....|+++|+||.|+...+.+..+++..+++.++++++++||+++.|++++|.
T Consensus        84 lv~D~~~~~s~~~l~~-~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~  161 (210)
T PLN03108         84 LVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (210)
T ss_pred             EEEECCcHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999887 766665432 35789999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 028381          171 ELVLKILDT  179 (210)
Q Consensus       171 ~l~~~~~~~  179 (210)
                      ++++.+++.
T Consensus       162 ~l~~~~~~~  170 (210)
T PLN03108        162 KTAAKIYKK  170 (210)
T ss_pred             HHHHHHHHH
Confidence            999988764

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1e-32  Score=196.49  Aligned_cols=161  Identities=45%  Similarity=0.806  Sum_probs=141.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +.+||+++|++|+|||||++++..+.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            57999999999999999999999988876554 66666777777888888999999999999999889999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  170 (210)
                      |||++++.+++.+.. |+..+... ...++|+++|+||+|+...+....+++..+++..+. .++++||++|.|++++|.
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~  159 (165)
T cd01864          82 AYDITRRSSFESVPH-WIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL  159 (165)
T ss_pred             EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence            999999999999887 88877653 345789999999999987777777888888888876 689999999999999999


Q ss_pred             HHHHH
Q 028381          171 ELVLK  175 (210)
Q Consensus       171 ~l~~~  175 (210)
                      ++.+.
T Consensus       160 ~l~~~  164 (165)
T cd01864         160 LMATE  164 (165)
T ss_pred             HHHHh
Confidence            99875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.2e-32  Score=198.88  Aligned_cols=163  Identities=28%  Similarity=0.572  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||++++..+.|...+ ++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999887654 48888887777888999999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-----CceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-----ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      |++++.++..+.. |+..+.... ....| ++|+||+|+..     ......+++..++..++++++++||++|.|++++
T Consensus        81 D~t~~~s~~~i~~-~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l  157 (182)
T cd04128          81 DLTRKSTLNSIKE-WYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI  157 (182)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999987 888776543 33466 67899999842     1112345677888888999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028381          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |.++.+.+++.+
T Consensus       158 f~~l~~~l~~~~  169 (182)
T cd04128         158 FKIVLAKAFDLP  169 (182)
T ss_pred             HHHHHHHHHhcC
Confidence            999999997644

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.9e-32  Score=195.34  Aligned_cols=161  Identities=34%  Similarity=0.600  Sum_probs=137.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++++.+.+...+ ++.+.++....+..++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988876544 47777777777777888899999999999998888888999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |+++++++..+.. |+..+.....  ++|+++|+||+|+... ... .+...+....+++++++||++|.|++++|++|.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~--~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~  155 (166)
T cd00877          81 DVTSRVTYKNVPN-WHRDLVRVCG--NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA  155 (166)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCC--CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence            9999999999987 8888876532  7999999999999633 222 334566777788999999999999999999999


Q ss_pred             HHHHcCC
Q 028381          174 LKILDTP  180 (210)
Q Consensus       174 ~~~~~~~  180 (210)
                      +.+++.+
T Consensus       156 ~~~~~~~  162 (166)
T cd00877         156 RKLLGNP  162 (166)
T ss_pred             HHHHhcc
Confidence            9997644

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-33  Score=186.62  Aligned_cols=172  Identities=42%  Similarity=0.797  Sum_probs=157.8

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      +.....+||+++|..|+|||+|+++++.+-|++... +.|.++-...+.+++.++++++|||+|++.++++...+++.++
T Consensus         2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah   81 (213)
T KOG0095|consen    2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH   81 (213)
T ss_pred             cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence            345678999999999999999999999999987665 9999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ++|+|||++...+|.-+.+ |+.++..+++. .+.-|+|+||.|+.+.+.+..+.+++++......++++||++..|++.
T Consensus        82 alilvydiscqpsfdclpe-wlreie~yan~-kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~  159 (213)
T KOG0095|consen   82 ALILVYDISCQPSFDCLPE-WLREIEQYANN-KVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEK  159 (213)
T ss_pred             eEEEEEecccCcchhhhHH-HHHHHHHHhhc-ceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHH
Confidence            9999999999999999999 99999998755 466689999999998889999999999999888999999999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q 028381          168 CFEELVLKILDTPSL  182 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~  182 (210)
                      +|..+.-++....+.
T Consensus       160 lf~~~a~rli~~ar~  174 (213)
T KOG0095|consen  160 LFLDLACRLISEARQ  174 (213)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999888665544

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=2.1e-32  Score=194.06  Aligned_cols=159  Identities=35%  Similarity=0.593  Sum_probs=135.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.++.+...+. +.+. .....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            699999999999999999999988866554 4443 33555677888889999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |+++..++..+.. |...+.......+.|+++|+||.|+.. .....+++..++...+++++++||++|.|++++|.+++
T Consensus        81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999887 666666555556799999999999865 45566777888888899999999999999999999998


Q ss_pred             HHH
Q 028381          174 LKI  176 (210)
Q Consensus       174 ~~~  176 (210)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2.3e-32  Score=194.68  Aligned_cols=162  Identities=47%  Similarity=0.820  Sum_probs=143.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +.+||+++|++|||||||++++.++.+... .++.+.++....+..++..+.+.+||+||++.+..++..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            468999999999999999999999987644 4577777777788888888999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      |||++++.++..+.. |+..+.... ..++|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  159 (165)
T cd01868          82 VYDITKKQTFENVER-WLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ  159 (165)
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999987 888776643 346899999999999877777788888888888899999999999999999999


Q ss_pred             HHHHH
Q 028381          172 LVLKI  176 (210)
Q Consensus       172 l~~~~  176 (210)
                      ++..+
T Consensus       160 l~~~i  164 (165)
T cd01868         160 LLTEI  164 (165)
T ss_pred             HHHHh
Confidence            98875

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=1.4e-32  Score=194.99  Aligned_cols=159  Identities=48%  Similarity=0.800  Sum_probs=141.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.++.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            589999999999999999999998865544 7777777777788888899999999999999989999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |++++.++..+.. |+..+... ...++|+++|+||.|+.....+..+++..++...+++++++||+++.|++++|+++.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~  158 (161)
T cd04113          81 DITNRTSFEALPT-WLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA  158 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999988 77766543 356799999999999987777888889999999999999999999999999999998


Q ss_pred             HH
Q 028381          174 LK  175 (210)
Q Consensus       174 ~~  175 (210)
                      +.
T Consensus       159 ~~  160 (161)
T cd04113         159 RS  160 (161)
T ss_pred             Hh
Confidence            75

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=2.1e-32  Score=194.91  Aligned_cols=159  Identities=33%  Similarity=0.469  Sum_probs=134.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++++++.+...+. +.+. .+...+..+...+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            799999999999999999999998865544 4443 33445666778899999999999999988888899999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      |++++++++.+.. |...+.....  ..++|+++|+||+|+...+.+..+++..++...++++++|||++|.|++++|++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~  159 (165)
T cd04140          81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE  159 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence            9999999999988 6666654322  257899999999999776677777888888888999999999999999999999


Q ss_pred             HHHH
Q 028381          172 LVLK  175 (210)
Q Consensus       172 l~~~  175 (210)
                      |++.
T Consensus       160 l~~~  163 (165)
T cd04140         160 LLNL  163 (165)
T ss_pred             HHhc
Confidence            9753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=2.6e-32  Score=195.27  Aligned_cols=162  Identities=33%  Similarity=0.588  Sum_probs=139.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      ||+++|++|||||||++++..+.|...+ ++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            7999999999999999999999887655 488878777778888889999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      ++++.++..+.. |+..+.........|+++|+||.|+.....  ...+++..++..++.+++++||+++.|++++|..+
T Consensus        82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l  160 (170)
T cd04108          82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV  160 (170)
T ss_pred             CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            999999999987 887765433334578999999999965433  34556777888888999999999999999999999


Q ss_pred             HHHHHc
Q 028381          173 VLKILD  178 (210)
Q Consensus       173 ~~~~~~  178 (210)
                      ...+.+
T Consensus       161 ~~~~~~  166 (170)
T cd04108         161 AALTFE  166 (170)
T ss_pred             HHHHHH
Confidence            998854

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=2.4e-32  Score=194.33  Aligned_cols=161  Identities=37%  Similarity=0.587  Sum_probs=137.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|+|||||++++.++.+...+. +.+ ........+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            4799999999999999999999888765544 443 33344566788889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      ||+++..++..+.. |...+.......+.|+++|+||+|+.....+..+++..++...+++++++||++|.|++++|+++
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            99999999999988 66666554445678999999999998777777777888888889999999999999999999999


Q ss_pred             HHHH
Q 028381          173 VLKI  176 (210)
Q Consensus       173 ~~~~  176 (210)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-33  Score=187.10  Aligned_cols=172  Identities=47%  Similarity=0.788  Sum_probs=158.5

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      +..++.+|++++|+.|+|||+|++++..++|.+... +.|.++....+.+.++.+++++|||+|++.+++..+.+++++.
T Consensus         4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA   83 (214)
T KOG0086|consen    4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   83 (214)
T ss_pred             hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence            345789999999999999999999999999976665 9999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      +.++|||+++.++|+.+.. |+..++. ...+++.+++++||.|+...+.+...++.+++.+..+.+.++|+++|+|+++
T Consensus        84 GAlLVYD~TsrdsfnaLtn-WL~DaR~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   84 GALLVYDITSRDSFNALTN-WLTDART-LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             ceEEEEeccchhhHHHHHH-HHHHHHh-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            9999999999999999999 8888876 3467788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q 028381          168 CFEELVLKILDTPSL  182 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~  182 (210)
                      .|-.....++...+.
T Consensus       162 aFl~c~~tIl~kIE~  176 (214)
T KOG0086|consen  162 AFLKCARTILNKIES  176 (214)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999988888766544

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=2.8e-32  Score=195.25  Aligned_cols=162  Identities=38%  Similarity=0.685  Sum_probs=143.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhcccCccEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-TLTSSYYRGAQGIIM   91 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~   91 (210)
                      .+||+++|++|||||||+++++.+.+...+ ++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            589999999999999999999998886544 477777777778889999999999999998876 467888999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC---CCCHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT---RVNVQQC  168 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~  168 (210)
                      |||++++.++..+.. |+..+.......++|+++|+||+|+.....+..+++..++...+++++++||++   +.+++++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~  160 (170)
T cd04115          82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI  160 (170)
T ss_pred             EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence            999999999999988 888887766567899999999999987777788888889988899999999999   8899999


Q ss_pred             HHHHHHHH
Q 028381          169 FEELVLKI  176 (210)
Q Consensus       169 ~~~l~~~~  176 (210)
                      |..+++.+
T Consensus       161 f~~l~~~~  168 (170)
T cd04115         161 FMTLAHKL  168 (170)
T ss_pred             HHHHHHHh
Confidence            99998866

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=4e-32  Score=193.10  Aligned_cols=162  Identities=56%  Similarity=0.933  Sum_probs=143.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||++++.+..+...+ ++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999988875544 47777777777888888899999999999998989999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |++++.+++.+.. |+..+..+. ..++|+++|+||+|+.....+..+.+..++...+++++++|++++.|++++|+++.
T Consensus        81 d~~~~~s~~~~~~-~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~  158 (164)
T smart00175       81 DITNRESFENLKN-WLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA  158 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999887 888777654 25799999999999977677778888888888899999999999999999999999


Q ss_pred             HHHHc
Q 028381          174 LKILD  178 (210)
Q Consensus       174 ~~~~~  178 (210)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T smart00175      159 REILK  163 (164)
T ss_pred             HHHhh
Confidence            98865

Rab GTPases are implicated in vesicle trafficking.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=4.2e-32  Score=194.94  Aligned_cols=159  Identities=33%  Similarity=0.595  Sum_probs=136.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      |+|+|++|||||||++++.++.+...+. +.. ..+...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF-ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE-eeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            5899999999999999999999876655 444 33445667788889999999999999998999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-eEEEEccCCC
Q 028381           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGC-LFIECSAKTR  162 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  162 (210)
                      +++++|+.+...|+..+...  ..++|+++|+||.|+....            .+..+++..++...+. ++++|||+++
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  157 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ  157 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence            99999999976688888764  3579999999999996432            3667788889999986 8999999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 028381          163 VNVQQCFEELVLKILD  178 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (210)
                      .|++++|..+++.+++
T Consensus       158 ~~v~~lf~~l~~~~~~  173 (174)
T smart00174      158 EGVREVFEEAIRAALN  173 (174)
T ss_pred             CCHHHHHHHHHHHhcC
Confidence            9999999999998754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=4.5e-32  Score=192.57  Aligned_cols=158  Identities=35%  Similarity=0.594  Sum_probs=138.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG--GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +||+++|++|+|||||++++.++.+...+ ++.+.++....+.+.  +..+.+.+||+||++.+...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            58999999999999999999998886554 477777766666666  778999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      |||+++++++..+.. |+..+...  ..++|+++|+||.|+.....+..+++..++...+++++++||+++.|++++|++
T Consensus        81 v~d~~~~~s~~~l~~-~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  157 (162)
T cd04106          81 VFSTTDRESFEAIES-WKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY  157 (162)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            999999999999887 87777653  357899999999999777777778888999999999999999999999999999


Q ss_pred             HHHH
Q 028381          172 LVLK  175 (210)
Q Consensus       172 l~~~  175 (210)
                      |...
T Consensus       158 l~~~  161 (162)
T cd04106         158 LAEK  161 (162)
T ss_pred             HHHh
Confidence            9754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=1e-31  Score=192.26  Aligned_cols=162  Identities=41%  Similarity=0.704  Sum_probs=139.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||++++.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            46799999999999999999999998886644 47777776677788999999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ  166 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  166 (210)
                      +|||+++++++..+.. |...+.....   ..++|+++|+||.|+. .+.+..+++.+++...+. +++++||+++.|+.
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          83 LTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            9999999999999877 7666654332   3468999999999986 455667788899888874 79999999999999


Q ss_pred             HHHHHHHHH
Q 028381          167 QCFEELVLK  175 (210)
Q Consensus       167 ~~~~~l~~~  175 (210)
                      ++|.++++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.1e-31  Score=190.40  Aligned_cols=159  Identities=34%  Similarity=0.572  Sum_probs=135.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||++++..+.+.+.+. +.+.++......+++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            589999999999999999999998866554 6666666666778888999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |++++.++..+.. |+..+...  ..+.|+++|+||.|+...   ..++...++...+++++++||+++.|++++|+.++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~--~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  154 (161)
T cd04124          81 DVTRKITYKNLSK-WYEELREY--RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI  154 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999877 88777653  356899999999998432   12345566667788999999999999999999999


Q ss_pred             HHHHcC
Q 028381          174 LKILDT  179 (210)
Q Consensus       174 ~~~~~~  179 (210)
                      +.++++
T Consensus       155 ~~~~~~  160 (161)
T cd04124         155 KLAVSY  160 (161)
T ss_pred             HHHHhc
Confidence            988765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=1.6e-31  Score=189.87  Aligned_cols=161  Identities=46%  Similarity=0.769  Sum_probs=142.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++.++.+.. ..++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            3799999999999999999999999876 445777777777788899999999999999998888888899999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      +|+++++++..... |+..+.... ...+|+++++||+|+........++...++...+++++++||++|.|+.++|+++
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd01860          81 YDITSEESFEKAKS-WVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI  158 (163)
T ss_pred             EECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999887 777776543 3679999999999997666677778888888889999999999999999999999


Q ss_pred             HHHH
Q 028381          173 VLKI  176 (210)
Q Consensus       173 ~~~~  176 (210)
                      ++.+
T Consensus       159 ~~~l  162 (163)
T cd01860         159 AKKL  162 (163)
T ss_pred             HHHh
Confidence            9876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=1.4e-31  Score=195.51  Aligned_cols=167  Identities=24%  Similarity=0.371  Sum_probs=134.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRG   85 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~   85 (210)
                      +||+|+|++|||||||++++.++.+...+. +.+.+++...+.+++..+.+.+|||||...+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999998876543 666566656677788889999999999654321        12334789


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCeEEEEccCCC
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVTKKEGINFAR-EYGCLFIECSAKTR  162 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  162 (210)
                      +|++|+|||++++++++.+.. |...+....  ...++|+++|+||+|+...+....++...++. ..++++++|||++|
T Consensus        81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g  159 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN  159 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence            999999999999999999987 666665433  24679999999999997666666666777654 56899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCc
Q 028381          163 VNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~~~  182 (210)
                      .|++++|..+++.++.+-+.
T Consensus       160 ~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         160 WHILLLFKELLISATTRGRS  179 (198)
T ss_pred             CCHHHHHHHHHHHhhccCCC
Confidence            99999999999988866554

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=2.2e-31  Score=191.25  Aligned_cols=160  Identities=33%  Similarity=0.600  Sum_probs=136.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|+|||||++++..+.+...+.+.........+.+++..+.+.+||+||++.+...+..+++++|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999887655433333444567788888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEEccCC
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAKT  161 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  161 (210)
                      ++++.+|+.+...|...+...  ..+.|+++|+||+|+.+.            ..+..+++..+++..+. ++++|||++
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999976688888754  567999999999998543            24567788889988886 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028381          162 RVNVQQCFEELVLKI  176 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (210)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-34  Score=191.65  Aligned_cols=174  Identities=37%  Similarity=0.680  Sum_probs=157.7

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE---------CCeEEEEEEEeCCCccccccc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV---------GGKKLKLAIWDTAGQERFRTL   78 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~l~D~~g~~~~~~~   78 (210)
                      ...++.||.+.+|++|+|||+|+.+++.++|..... +.+.++....+.+         .+.++.+++|||+|++.++++
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            455788999999999999999999999999976665 8898888777665         224578999999999999999


Q ss_pred             hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEc
Q 028381           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (210)
                      ..++++.+-+++++||+++..||-+++. |+..+..++-..+.-+|+++||.|+++.+.+..+++..++.++++|||++|
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS  162 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS  162 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence            9999999999999999999999999999 999988777777888999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCCcc
Q 028381          159 AKTRVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      |-+|.|+++..+.+++.++++.+.-
T Consensus       163 A~tg~Nv~kave~LldlvM~Rie~~  187 (219)
T KOG0081|consen  163 ACTGTNVEKAVELLLDLVMKRIEQC  187 (219)
T ss_pred             cccCcCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998876654

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.6e-32  Score=177.90  Aligned_cols=199  Identities=47%  Similarity=0.778  Sum_probs=169.8

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +..+.+|.+++|+-|+|||+|+..+...+|...-| +.+.++....+.+.+.++++++||+.|++.++...+.+++++.+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            45688999999999999999999999999977766 99999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      .++|||++.+.+++.+.. |+...+. ..+++..+++++||.|++..+.+..++++.++.+.|..++++||++|.++++.
T Consensus        87 almvyditrrstynhlss-wl~dar~-ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda  164 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSS-WLTDARN-LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA  164 (215)
T ss_pred             eeEEEEehhhhhhhhHHH-HHhhhhc-cCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence            999999999999999988 8877765 45778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCc----ccccccCccc----ccccCCCCccCcccCCC-C
Q 028381          169 FEELVLKILDTPSL----LAEGSKGLKK----NIFKQKPPEADAAASGC-C  210 (210)
Q Consensus       169 ~~~l~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~  210 (210)
                      |-.....+.++...    +...+.+..+    |..-.-..+...++.+| |
T Consensus       165 fle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c  215 (215)
T KOG0097|consen  165 FLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC  215 (215)
T ss_pred             HHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence            98888887766543    2222222222    22222345566677888 6

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=2e-31  Score=194.12  Aligned_cols=158  Identities=23%  Similarity=0.405  Sum_probs=126.8

Q ss_pred             eeEEEEEcCCCCcHHHHHH-HHhcCCC-----CCC-CCCcee-eeEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 028381           14 LFKLLMIGDSGVGKSSLLL-SFTSDNF-----EEL-SPTIGV-DFKVKY--------VDVGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~-~l~~~~~-----~~~-~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      .+||+++|++|||||||+. ++.++.+     ... .+|.+. +.+...        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 6655433     222 235532 222221        25688899999999999865  2


Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-------------------Ccee
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-------------------ERVV  138 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~  138 (210)
                      ....+++++|++++|||++++.||+.+...|...+....  .+.|+++||||+|+..                   .+.+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence            445678999999999999999999999755888887643  4789999999999864                   3677


Q ss_pred             cHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHH
Q 028381          139 TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (210)
                      ..++++.++++++++|++|||++|.||+++|..+++.
T Consensus       158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8899999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=3.3e-31  Score=189.30  Aligned_cols=161  Identities=34%  Similarity=0.608  Sum_probs=138.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||++++.++.+...+. +.+. .....+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            789999999999999999999988865544 4443 34566677888899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CeEEEEccCCCCCHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      |++++++++.... |...+.......++|+++++||.|+...+.+..++...++...+ ++++++||+++.|++++|.++
T Consensus        81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            9999999999987 77767654445679999999999997777777777778888887 789999999999999999999


Q ss_pred             HHHHH
Q 028381          173 VLKIL  177 (210)
Q Consensus       173 ~~~~~  177 (210)
                      +..++
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            98764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=3.2e-31  Score=188.03  Aligned_cols=159  Identities=72%  Similarity=1.105  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.+..+.. ..++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            589999999999999999999988765 4457777777777777888899999999999999888899999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |++++.+++.+.. |+..+..+....+.|+++|+||+|+. ......++...++...+++++++||++|.|+++++++++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863          81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            9999999999888 88888877767789999999999996 334556778888888899999999999999999999998


Q ss_pred             HH
Q 028381          174 LK  175 (210)
Q Consensus       174 ~~  175 (210)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            75

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=1.8e-31  Score=188.50  Aligned_cols=154  Identities=23%  Similarity=0.395  Sum_probs=129.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+.++..+.|.+.+++.+..+ ...+.+++..+.+.+||++|++.     ..+++.+|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            489999999999999999999888876555434333 45678888889999999999864     245678999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCeEEEEccCCCCCHHHHHHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE--SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      ++++.+|+.+.. |+..+.......+.|+++|+||.|+.  ..+.+..++++.+++.. ++.|++|||+++.||+++|..
T Consensus        75 ~~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          75 LENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            999999999987 87877765545678999999999984  35677888888888876 489999999999999999999


Q ss_pred             HHHH
Q 028381          172 LVLK  175 (210)
Q Consensus       172 l~~~  175 (210)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            9864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3.2e-31  Score=193.44  Aligned_cols=157  Identities=31%  Similarity=0.564  Sum_probs=136.7

Q ss_pred             EcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCc
Q 028381           20 IGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR   98 (210)
Q Consensus        20 ~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   98 (210)
                      +|++|||||||+++++.+.+...+ ++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            699999999999999988887544 5888888888888889999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381           99 DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus        99 ~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      .+|..+.. |+..+....  .++|+++|+||+|+... .+..+. ..++...++++++|||++|.||+++|.+++..+.+
T Consensus        81 ~S~~~i~~-w~~~i~~~~--~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176       81 VTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             HHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999987 988887643  57999999999998543 334443 46777888999999999999999999999999977


Q ss_pred             CCC
Q 028381          179 TPS  181 (210)
Q Consensus       179 ~~~  181 (210)
                      ...
T Consensus       156 ~~~  158 (200)
T smart00176      156 DPN  158 (200)
T ss_pred             ccc
Confidence            643

Ran is involved in the active transport of proteins through nuclear pores.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=3.8e-31  Score=189.86  Aligned_cols=158  Identities=31%  Similarity=0.546  Sum_probs=135.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|+|||||++++.++.+...+.....+.+...+.+++..+.+.+||+||+..+...+..+++++|++|+|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            58999999999999999999988887766644455555667888888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-eEEEEccCC
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFIECSAKT  161 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  161 (210)
                      ++++.+|+.+...|+..+...  ..++|+++|+||.|+..            .+.+..+++..++...+. +++++||++
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999876688777643  34689999999999853            345677788899998887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 028381          162 RVNVQQCFEELVL  174 (210)
Q Consensus       162 ~~~i~~~~~~l~~  174 (210)
                      +.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=3.3e-31  Score=187.90  Aligned_cols=159  Identities=40%  Similarity=0.690  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||++++++..+...+ ++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999886544 47777777777788888899999999999999988999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |+++++++..+.. |+..+.... ..+.|+++|+||.|+........++...++...+++++++||+++.|++++|.++.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~  158 (161)
T cd01861          81 DITNRQSFDNTDK-WIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA  158 (161)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999887 777665432 23699999999999976666777778888888899999999999999999999998


Q ss_pred             HH
Q 028381          174 LK  175 (210)
Q Consensus       174 ~~  175 (210)
                      +.
T Consensus       159 ~~  160 (161)
T cd01861         159 SA  160 (161)
T ss_pred             Hh
Confidence            75

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=1.8e-31  Score=190.17  Aligned_cols=160  Identities=33%  Similarity=0.523  Sum_probs=133.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhcccCccEEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~   93 (210)
                      ||+++|++|||||||+++++.+.+...++ +.. ......+.+++..+.+.+||+||+.. ....+...++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            68999999999999999999888765554 433 33345567788889999999999885 3345667789999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC-CHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCFEE  171 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~  171 (210)
                      |++++.+|+.+.. |...+..... ..++|+++|+||+|+...+.+..+++..++...+.+++++||+++. |++++|.+
T Consensus        80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~  158 (165)
T cd04146          80 SITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE  158 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence            9999999999988 7777776443 4579999999999997777778888889999999999999999995 99999999


Q ss_pred             HHHHHH
Q 028381          172 LVLKIL  177 (210)
Q Consensus       172 l~~~~~  177 (210)
                      +.+.+.
T Consensus       159 l~~~~~  164 (165)
T cd04146         159 LCREVR  164 (165)
T ss_pred             HHHHHh
Confidence            998774

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=7e-31  Score=188.14  Aligned_cols=165  Identities=39%  Similarity=0.696  Sum_probs=140.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||++++.+..+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            589999999999999999999988765544 6676776667778888899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CeEEEEccCCCCCHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~  169 (210)
                      |++++.++..... |...+.....   ..++|+++|+||+|+..+.....++...+....+ .+++++|+++|.|++++|
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  159 (172)
T cd01862          81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF  159 (172)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence            9999999988876 6665544332   2378999999999997666666777788888877 789999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028381          170 EELVLKILDTP  180 (210)
Q Consensus       170 ~~l~~~~~~~~  180 (210)
                      +++.+.+++..
T Consensus       160 ~~i~~~~~~~~  170 (172)
T cd01862         160 ETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHhcc
Confidence            99999887763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=7e-31  Score=186.20  Aligned_cols=160  Identities=41%  Similarity=0.735  Sum_probs=138.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|+|||||++++.++.+...+. +.........+...+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            589999999999999999999988765443 5555555666667788889999999999988888998999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |+++++++..+.. |...+..... .++|+++|+||+|+.....+..+++..+....+++++++|++++.|++++++++.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~  158 (162)
T cd04123          81 DITDADSFQKVKK-WIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA  158 (162)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999887 7777766543 3799999999999987667777788888888899999999999999999999998


Q ss_pred             HHH
Q 028381          174 LKI  176 (210)
Q Consensus       174 ~~~  176 (210)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04123         159 KRM  161 (162)
T ss_pred             HHh
Confidence            875

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=6e-31  Score=187.15  Aligned_cols=159  Identities=33%  Similarity=0.523  Sum_probs=134.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC--CCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD--NFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~--~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      +||+++|++|||||||++++..+  .+...+ ++.+.++....+.++ +..+.+.+||+||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  455444 477777766666664 56799999999999988888899999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|||+++++++..+.. |+..+....  .++|+++|+||.|+.....+.......+....+++++++||+++.|++++|+
T Consensus        81 ~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  157 (164)
T cd04101          81 LVYDVSNKASFENCSR-WVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFE  157 (164)
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHH
Confidence            9999999999998877 877776542  5689999999999977666777667777777889999999999999999999


Q ss_pred             HHHHHH
Q 028381          171 ELVLKI  176 (210)
Q Consensus       171 ~l~~~~  176 (210)
                      ++.+.+
T Consensus       158 ~l~~~~  163 (164)
T cd04101         158 SLARAF  163 (164)
T ss_pred             HHHHHh
Confidence            999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=7.9e-31  Score=194.81  Aligned_cols=165  Identities=31%  Similarity=0.409  Sum_probs=137.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc-CccEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR-GAQGIIM   91 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i~   91 (210)
                      +||+++|++|||||||+++|..+.+. ..+. +.+.++....+.+++....+.+||++|++.  .....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999888875 4444 444466677788888899999999999872  22334556 8999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      |||++++.+|+.+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus        79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~  157 (221)
T cd04148          79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG  157 (221)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            999999999999888 7777766544467999999999999877778888888888888999999999999999999999


Q ss_pred             HHHHHHcCCCc
Q 028381          172 LVLKILDTPSL  182 (210)
Q Consensus       172 l~~~~~~~~~~  182 (210)
                      +++.+......
T Consensus       158 l~~~~~~~~~~  168 (221)
T cd04148         158 IVRQIRLRRDS  168 (221)
T ss_pred             HHHHHHhhhcc
Confidence            99998754443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.98  E-value=1.5e-30  Score=184.98  Aligned_cols=163  Identities=37%  Similarity=0.603  Sum_probs=136.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+++++...+...+..............++..+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999988886555432233444556778889999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (210)
                      ++++.++..+.. |...+.......++|+++|+||+|+........++...+...++++++++||+++.|++++|.++.+
T Consensus        81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            999999999988 5555544444567999999999999765556667777888888899999999999999999999998


Q ss_pred             HHHc
Q 028381          175 KILD  178 (210)
Q Consensus       175 ~~~~  178 (210)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04139         160 EIRQ  163 (164)
T ss_pred             HHHh
Confidence            8753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=1e-30  Score=186.90  Aligned_cols=163  Identities=22%  Similarity=0.285  Sum_probs=135.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ...+||+++|++|||||||+++++++.+. ..+ +|.+..+....+.+++..+.+.+||++|.+.+...+..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999999986 544 4777777666677888888999999999999888888889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccCCCCCHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQC  168 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~  168 (210)
                      ++|+|++++.+++.+.. |...+..   ..++|+++|+||.|+.+.......+...++...+.. ++++||+++.|++++
T Consensus        82 llv~d~~~~~s~~~~~~-~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  157 (169)
T cd01892          82 CLVYDSSDPKSFSYCAE-VYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNEL  157 (169)
T ss_pred             EEEEeCCCHHHHHHHHH-HHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHH
Confidence            99999999999988876 6654432   346899999999999655444334456677777774 799999999999999


Q ss_pred             HHHHHHHHHc
Q 028381          169 FEELVLKILD  178 (210)
Q Consensus       169 ~~~l~~~~~~  178 (210)
                      |..+.+.+..
T Consensus       158 f~~l~~~~~~  167 (169)
T cd01892         158 FTKLATAAQY  167 (169)
T ss_pred             HHHHHHHhhC
Confidence            9999998763

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.98  E-value=1.1e-30  Score=196.38  Aligned_cols=160  Identities=26%  Similarity=0.444  Sum_probs=134.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++++++.+...+. +.+ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            589999999999999999999998876554 544 555666788899999999999999988888888889999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhc--------cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCeEEEEccCCCCC
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYS--------TNQDCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRVN  164 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~  164 (210)
                      |+++.++|+.+.. |...+....        ...++|+++|+||+|+...+.+..+++..++.. .++.++++||+++.|
T Consensus        80 dv~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g  158 (247)
T cd04143          80 SLDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN  158 (247)
T ss_pred             eCCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence            9999999999987 666665431        235789999999999976566777777777654 467899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028381          165 VQQCFEELVLKI  176 (210)
Q Consensus       165 i~~~~~~l~~~~  176 (210)
                      ++++|.+|....
T Consensus       159 I~elf~~L~~~~  170 (247)
T cd04143         159 LDEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999866

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=3.4e-30  Score=188.68  Aligned_cols=167  Identities=30%  Similarity=0.468  Sum_probs=135.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      ||+++|++|||||||+++++++.+...+. +.. ......+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            68999999999999999999998876554 433 4555567778888999999999999988888889999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-CceecHHHHHHHHH-HhCCeEEEEccCCCCCHHHHHHHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-ERVVTKKEGINFAR-EYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      ++++.+++.+.. |...+.......++|+++|+||+|+.. ...+..++...... ..+.+++++||++|.|++++|+++
T Consensus        80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  158 (198)
T cd04147          80 VDDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKEL  158 (198)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHH
Confidence            999999999987 766666555556799999999999865 34454544444443 446789999999999999999999


Q ss_pred             HHHHHcCCCccc
Q 028381          173 VLKILDTPSLLA  184 (210)
Q Consensus       173 ~~~~~~~~~~~~  184 (210)
                      ++.+.......+
T Consensus       159 ~~~~~~~~~~~~  170 (198)
T cd04147         159 LRQANLPYNLSP  170 (198)
T ss_pred             HHHhhcccccch
Confidence            998865444443

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=8.5e-30  Score=182.09  Aligned_cols=164  Identities=44%  Similarity=0.820  Sum_probs=139.9

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ..+.++|+++|++|||||||++++..+.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++
T Consensus         4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            356799999999999999999999987775543 4666667777778888889999999999998888888999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|||++++.++..+.. |+..+... ...++|+++|+||+|+.....+..+....+......+++++||++|.|++++|
T Consensus        84 i~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  161 (169)
T cd04114          84 ILTYDITCEESFRCLPE-WLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLF  161 (169)
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHH
Confidence            99999999999988877 87777654 24468999999999997776677666777777777889999999999999999


Q ss_pred             HHHHHHH
Q 028381          170 EELVLKI  176 (210)
Q Consensus       170 ~~l~~~~  176 (210)
                      +++.+.+
T Consensus       162 ~~i~~~~  168 (169)
T cd04114         162 LDLACRL  168 (169)
T ss_pred             HHHHHHh
Confidence            9999865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=9.3e-30  Score=184.81  Aligned_cols=164  Identities=35%  Similarity=0.541  Sum_probs=134.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .||+++|++|+|||||++++..+.+.+.+. +....+ ...+.+++..+.+.+||++|++.+.......++.+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            589999999999999999999887765443 433333 345667888889999999999888777777789999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC----------CceecHHHHHHHHHHhCC-eEEEEccCCC
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES----------ERVVTKKEGINFAREYGC-LFIECSAKTR  162 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  162 (210)
                      |+++.+++..+...|...+...  ..++|+++|+||.|+..          .+.+..+++..++...+. ++++|||++|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999976688888754  34699999999999853          234456778888888885 7999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCC
Q 028381          163 VNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~~  181 (210)
                      .|++++|.++.+.++..++
T Consensus       159 ~~v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         159 EGVDDVFEAATRAALLVRK  177 (187)
T ss_pred             CCHHHHHHHHHHHHhcccC
Confidence            9999999999998866554

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=3e-30  Score=184.54  Aligned_cols=160  Identities=24%  Similarity=0.433  Sum_probs=126.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      ||+++|+++||||||++++.+..+..+.+|.+..+..  +  +...+.+.+||+||+..+...+..+++.+|++++|+|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~--~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVET--V--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEE--E--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            6899999999999999999988776655566655432  2  23467899999999999988999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC------CeEEEEccCCCCCHHHHH
Q 028381           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG------CLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~  169 (210)
                      +++.++..+.. |+..+.......+.|+++|+||+|+...  ...+++..++...+      +.+++|||++|.|++++|
T Consensus        77 s~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          77 SHRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CcHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            99999999887 4444433222345899999999998643  55566666554222      258899999999999999


Q ss_pred             HHHHHHHHcCCCc
Q 028381          170 EELVLKILDTPSL  182 (210)
Q Consensus       170 ~~l~~~~~~~~~~  182 (210)
                      +||.+.+.++..+
T Consensus       154 ~~l~~~~~~~~~~  166 (169)
T cd04158         154 DWLSRQLVAAGVL  166 (169)
T ss_pred             HHHHHHHhhcccc
Confidence            9999988776654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=1.1e-29  Score=182.59  Aligned_cols=159  Identities=34%  Similarity=0.631  Sum_probs=132.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .||+++|++|||||||++++.++.+...+. +.+..+ ...+.+++..+.+.+|||+|++.+...+...+..+|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            589999999999999999999998876554 554443 345677888899999999999998888888899999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEEccC
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAK  160 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  160 (210)
                      |+++.++++.+...|...+...  ..++|+++|+||.|+...            ..+...+++.++...+. ++++|||+
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999876688777653  357899999999998543            22345667788877775 79999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028381          161 TRVNVQQCFEELVLKI  176 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~  176 (210)
                      +|.|++++|.++.+.+
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=1.8e-30  Score=185.33  Aligned_cols=155  Identities=24%  Similarity=0.361  Sum_probs=122.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..+||+++|++|||||||+++|..+.+....++.+.++..  +.  ...+.+.+||+||++.+...+..+++.+|++|+|
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            3589999999999999999999988876655666655532  22  2468899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCeEEEEccCCCCCHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----YGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~  167 (210)
                      ||++++.++.....+|...+.. ....++|+++|+||+|+.+.  +..+++..+...     ....++++||++|.|+++
T Consensus        84 ~D~t~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          84 VDSADRDRIDEARQELHRIIND-REMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EeCCchhhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            9999999999887755555543 22346899999999998643  455555555421     234689999999999999


Q ss_pred             HHHHHHH
Q 028381          168 CFEELVL  174 (210)
Q Consensus       168 ~~~~l~~  174 (210)
                      +|+||.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=2.9e-30  Score=186.79  Aligned_cols=167  Identities=25%  Similarity=0.353  Sum_probs=131.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++..+.+....++.+.+.....+.. ++..+.+.+||+||++.+...|..+++++|++++|
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   82 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV   82 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999888766667666665555544 44678999999999999989999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------hCCeEEEEccCCCCCHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------YGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~  166 (210)
                      +|+++..++..+.. |+..+.......++|+++|+||+|+...  ...++...+...      .+++++++||+++.|++
T Consensus        83 ~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          83 VDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            99999988888876 6555554444567999999999998632  333334433321      12468999999999999


Q ss_pred             HHHHHHHHHHHcCCCcc
Q 028381          167 QCFEELVLKILDTPSLL  183 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~~~  183 (210)
                      ++|++|.+.+.+.++-.
T Consensus       160 ~l~~~l~~~l~~~~~~~  176 (183)
T cd04152         160 EGLEKLYEMILKRRKML  176 (183)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999997655433

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=1.3e-29  Score=182.99  Aligned_cols=165  Identities=35%  Similarity=0.549  Sum_probs=136.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .||+++|++|+|||||++++.++.+...+. +....+ ...+.+++..+.+.+||+||+..+...+..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            689999999999999999999888765443 443333 345667777889999999999998888888999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |.++..+++.+..+|...+. .....+.|+++|+||+|+...+.+..++...++...+.+++++||+++.|+.++|.++.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILD-MLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI  159 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999885554444 34456789999999999976666666677778888889999999999999999999999


Q ss_pred             HHHHcCCC
Q 028381          174 LKILDTPS  181 (210)
Q Consensus       174 ~~~~~~~~  181 (210)
                      +.+.+...
T Consensus       160 ~~~~~~~~  167 (180)
T cd04137         160 EEIEKVEN  167 (180)
T ss_pred             HHHHHhcC
Confidence            99866553

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00154 Rab Rab family

Probab=99.97  E-value=9.7e-30  Score=179.39  Aligned_cols=157  Identities=55%  Similarity=0.940  Sum_probs=139.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|+++||||||++++.++.+... .++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998776 458888888888888888899999999999998899999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |+++++++..+.. |+..+.... ..+.|+++++||+|+........++...++...+.+++++|++++.|++++|+++.
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDK-WLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            9999999998888 777776643 25689999999999975666778888889988899999999999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=1.2e-29  Score=181.52  Aligned_cols=158  Identities=34%  Similarity=0.603  Sum_probs=133.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+++|.++.+...+..............++..+.+.+||+||++.+.......++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            68999999999999999999999885444433334445556778889999999999999888888888899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-----------eecHHHHHHHHHHhCC-eEEEEccCCC
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-----------VVTKKEGINFAREYGC-LFIECSAKTR  162 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  162 (210)
                      ++++.++.....+|+..+..+.  .+.|+++|+||+|+....           .+..+++..+....+. +++++||+++
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            9999999988877888777643  479999999999986554           2356778888888887 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 028381          163 VNVQQCFEELVL  174 (210)
Q Consensus       163 ~~i~~~~~~l~~  174 (210)
                      .|++++|+++++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00876 Ras Ras family

Probab=99.97  E-value=1e-29  Score=179.85  Aligned_cols=158  Identities=40%  Similarity=0.658  Sum_probs=135.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      ||+++|++|||||||++++++..+...+. +.. +.....+..++..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            68999999999999999999887755554 333 5556667777778999999999999988888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (210)
                      .++++++..+.. |...+.......++|+++|+||+|+........+++..++...+.+++++|++++.|++++|.+|++
T Consensus        80 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876          80 ITDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence            999999999988 5555544344467999999999999876777888889999988899999999999999999999987


Q ss_pred             H
Q 028381          175 K  175 (210)
Q Consensus       175 ~  175 (210)
                      .
T Consensus       159 ~  159 (160)
T cd00876         159 E  159 (160)
T ss_pred             h
Confidence            5

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=6.4e-30  Score=184.50  Aligned_cols=161  Identities=22%  Similarity=0.363  Sum_probs=123.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|+++||||||++++..+.+....++.+.+...  +  +...+.+.+||+||++.+..+|..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~--~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEE--E--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            45689999999999999999999988887655677655432  2  2346789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-----CCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-----GCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~  166 (210)
                      |||+++++++.....++...+.. ....++|++||+||+|++...  ..++........     ...++++||++|.|++
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~-~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcC-HhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            99999999998887744444332 123578999999999986543  333322222111     1236689999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028381          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|+||.+.+.+.
T Consensus       168 e~~~~l~~~~~~~  180 (181)
T PLN00223        168 EGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999987653

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.7e-30  Score=183.91  Aligned_cols=153  Identities=22%  Similarity=0.409  Sum_probs=117.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|+++||||||++++..+.+....++.+.....  +..  ..+.+.+||+||++.+...+..+++++|++++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            58999999999999999999888887655666655432  222  46889999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHH-HHHHH----HhCCeEEEEccCCCCCHHHHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEG-INFAR----EYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      +++..++.....+|...+.. ....+.|+++++||+|+.+.  ...++. ..+..    ...+.++++||++|.|++++|
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          77 SNDRERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            99999999988755544433 22346899999999998543  222222 22211    123457899999999999999


Q ss_pred             HHHHH
Q 028381          170 EELVL  174 (210)
Q Consensus       170 ~~l~~  174 (210)
                      +||.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=2.6e-30  Score=185.75  Aligned_cols=158  Identities=22%  Similarity=0.370  Sum_probs=121.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||++++..+.+....++.+..+..  +..  ..+.+.+||+||+..+...|..+++++|++|+
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            34699999999999999999999877776555566655532  222  45789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  166 (210)
                      |||++++.++.....+|...+.. ....++|++||+||.|+.+..  ..+++.....     ...+.++++||++|.|++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            99999999999888845544433 223468999999999996432  2222222211     122357789999999999


Q ss_pred             HHHHHHHHHH
Q 028381          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      ++|+||.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=3.8e-29  Score=178.34  Aligned_cols=161  Identities=30%  Similarity=0.431  Sum_probs=126.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+++|.++.+...+++....+ .....+.+..+.+.+||+||...+...+...+..+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            489999999999999999999998876555332222 2334556778999999999998887777778899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHHhC--CeEEEEccCCCCCHHHHHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAREYG--CLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~  170 (210)
                      ++++.+++.+...|...+....  .+.|+++|+||+|+.+....  ..++...+.....  .+++++||+++.|++++|.
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            9999999998766888887643  47899999999999655432  1233333333333  3799999999999999999


Q ss_pred             HHHHHHHc
Q 028381          171 ELVLKILD  178 (210)
Q Consensus       171 ~l~~~~~~  178 (210)
                      .+...+++
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=1.3e-29  Score=181.87  Aligned_cols=158  Identities=23%  Similarity=0.336  Sum_probs=123.1

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .....++|+++|++|||||||++++.+..+....++.+....  .+.++  .+.+.+||+||++.+...+..+++.+|++
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK--TLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            345678999999999999999999998866655566664333  33343  47899999999998888899999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCC
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVN  164 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  164 (210)
                      ++|+|++++.++..... |+..+.......++|+++|+||+|+....  ..+++..+..     ..+++++++||++|.|
T Consensus        86 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  162 (173)
T cd04154          86 IWVVDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEG  162 (173)
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence            99999999999988877 44443322234679999999999996543  3444454442     2356899999999999


Q ss_pred             HHHHHHHHHH
Q 028381          165 VQQCFEELVL  174 (210)
Q Consensus       165 i~~~~~~l~~  174 (210)
                      ++++|+++++
T Consensus       163 i~~l~~~l~~  172 (173)
T cd04154         163 LLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=5.3e-30  Score=185.14  Aligned_cols=161  Identities=24%  Similarity=0.419  Sum_probs=123.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||++++..+.+....+|.+.++..  +.  ...+.+.+||+||++.+...+..+++.+|++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVET--VE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            34589999999999999999999888887655666655532  22  356889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |+|++++.++......+...+... ...++|++||+||.|+++..  ..+++....     ....+.++++||++|.|++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSED-ELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCH-hhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999998887555544431 23468999999999986432  222222211     1112356799999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028381          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|+||.+.+.+.
T Consensus       168 e~~~~l~~~i~~~  180 (182)
T PTZ00133        168 EGLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999888654

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.97  E-value=1.1e-29  Score=180.20  Aligned_cols=168  Identities=32%  Similarity=0.565  Sum_probs=150.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+|++++|+.++|||+|+-.+..+.|+..+.+.-.+-+...+.++ +..+.+.+|||+|++.|+.++...+..+|+++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            46799999999999999999999999999888755556667778885 99999999999999999999888999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CeEEEE
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~  157 (210)
                      ++|++.++.||+++...|+.++..+.  +++|+|+||+|.||...            ..+..+++..+++..| ..|++|
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            99999999999999888999999874  88999999999999632            3567788999999999 469999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCCC
Q 028381          158 SAKTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      ||+++.|+.+.|+..+...+...+
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999999988765

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=9.4e-29  Score=179.14  Aligned_cols=169  Identities=37%  Similarity=0.535  Sum_probs=151.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..+||+++|.+|+|||+|.-++..+.|...+..+..+.+...+.+++..+.+.++||+|++++..+...+++++|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            46899999999999999999999999988877444477888899999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      |++++..||+.+.. +...+.+......+|+++||||+|+...+.+..++++.++..++++++++||+.+.+++++|..+
T Consensus        82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            99999999999999 55555554555668999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCc
Q 028381          173 VLKILDTPSL  182 (210)
Q Consensus       173 ~~~~~~~~~~  182 (210)
                      ++.+...+..
T Consensus       161 ~r~~~~~~~~  170 (196)
T KOG0395|consen  161 VREIRLPREG  170 (196)
T ss_pred             HHHHHhhhcc
Confidence            9988764443

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=1.7e-30  Score=169.99  Aligned_cols=164  Identities=39%  Similarity=0.700  Sum_probs=148.7

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCCC-C-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECC
Q 028381           19 MIGDSGVGKSSLLLSFTSDNFEELS-P-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT   96 (210)
Q Consensus        19 i~G~~~~GKstli~~l~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   96 (210)
                      ++|++++|||+|+-|+..+-|-... . +.+.++....+.+++.++++++|||+|++.+++....+++.+|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            6899999999999888877764332 2 8899999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381           97 RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus        97 ~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      +..||++... |+..+.++. ...+.+.+++||+|+..++.+..++.+.++..+++|+.++||++|.|++..|-.|.+.+
T Consensus        82 nkasfdn~~~-wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l  159 (192)
T KOG0083|consen   82 NKASFDNCQA-WLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL  159 (192)
T ss_pred             cchhHHHHHH-HHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence            9999999999 999999986 44578889999999998899999999999999999999999999999999999999999


Q ss_pred             HcCCCccc
Q 028381          177 LDTPSLLA  184 (210)
Q Consensus       177 ~~~~~~~~  184 (210)
                      .+..-..+
T Consensus       160 ~k~~~~~~  167 (192)
T KOG0083|consen  160 KKLKMGAP  167 (192)
T ss_pred             HHhccCCC
Confidence            77654443

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=1.3e-27  Score=177.14  Aligned_cols=171  Identities=32%  Similarity=0.540  Sum_probs=142.5

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ......+||+++|++|||||||++++..+.+...+ ++.+.++....+..++..+.+.+||++|++.+...+..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            44556699999999999999999988877775544 58888888777778888999999999999988888888899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ++++|||+++..++..+.. |+..+...  ..+.|+++++||.|+.+.. ... +...++...++.++++||+++.|+++
T Consensus        84 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~--~~~~~i~lv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~  158 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPN-WHRDIVRV--CENIPIVLVGNKVDVKDRQ-VKA-RQITFHRKKNLQYYDISAKSNYNFEK  158 (215)
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECccCcccc-CCH-HHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999987 77777653  3568999999999985432 222 23456677788999999999999999


Q ss_pred             HHHHHHHHHHcCCCccc
Q 028381          168 CFEELVLKILDTPSLLA  184 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~~~  184 (210)
                      .|.++.+.+...+..+-
T Consensus       159 ~f~~ia~~l~~~p~~~~  175 (215)
T PTZ00132        159 PFLWLARRLTNDPNLVF  175 (215)
T ss_pred             HHHHHHHHHhhccccee
Confidence            99999999988776543

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=3.2e-29  Score=178.27  Aligned_cols=151  Identities=24%  Similarity=0.320  Sum_probs=120.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      |+++|++|||||||++++.++.+...+ ++.+...    ..+++..+.+.+||++|+..+...+..+++++|++++|||+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            799999999999999999988775443 4655432    23455678999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH----HHHHHHHHHhCCeEEEEccCC------CCCH
Q 028381           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK----KEGINFAREYGCLFIECSAKT------RVNV  165 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i  165 (210)
                      +++.++..... |+..+...  ..++|+++|+||.|+.....+..    ..+..++.+.+++++++||++      ++|+
T Consensus        78 t~~~s~~~~~~-~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v  154 (164)
T cd04162          78 ADSERLPLARQ-ELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV  154 (164)
T ss_pred             CCHHHHHHHHH-HHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence            99999988877 55544332  26799999999999976543321    224555566678899999998      9999


Q ss_pred             HHHHHHHHH
Q 028381          166 QQCFEELVL  174 (210)
Q Consensus       166 ~~~~~~l~~  174 (210)
                      .++|+.++.
T Consensus       155 ~~~~~~~~~  163 (164)
T cd04162         155 KDLLSQLIN  163 (164)
T ss_pred             HHHHHHHhc
Confidence            999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=2.1e-28  Score=175.75  Aligned_cols=155  Identities=23%  Similarity=0.392  Sum_probs=120.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..+||+++|++|+|||||+++++.+.+....++.+.++..  +..  ..+.+.+||+||+..+...+..+++.+|++++|
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            4589999999999999999999988887766677665533  233  357899999999999988999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      +|+++++++.....++...+.. ....++|+++++||+|+...  ...++.....     ...+++++++||+++.|+++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~-~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAH-EDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            9999999888877744444432 22356899999999998653  2333322221     23345799999999999999


Q ss_pred             HHHHHHH
Q 028381          168 CFEELVL  174 (210)
Q Consensus       168 ~~~~l~~  174 (210)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.4e-27  Score=174.24  Aligned_cols=160  Identities=26%  Similarity=0.402  Sum_probs=127.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-----CeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-----GKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +||+++|+++||||||++++.++.+...+. |.+.++....+.++     +..+.+.+||++|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999998876554 77777766666653     567899999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhc------------------cCCCCcEEEEEeCCCCCCCceecHH----HHHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYS------------------TNQDCIKLLVGNKVDKESERVVTKK----EGINF  146 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~  146 (210)
                      +|+|||++++.||+++.. |+..+....                  ...++|++|||||.|+.+.+.+..+    ....+
T Consensus        81 iIlVyDvtn~~Sf~~l~~-W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQR-WSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHH-HHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhH
Confidence            999999999999999987 888876532                  1246899999999999765544443    24566


Q ss_pred             HHHhCCeEEEEccCCCCC----------HHHHHHHHHHH
Q 028381          147 AREYGCLFIECSAKTRVN----------VQQCFEELVLK  175 (210)
Q Consensus       147 ~~~~~~~~~~~Sa~~~~~----------i~~~~~~l~~~  175 (210)
                      +...+++.++.++++...          +..+|+.++++
T Consensus       160 a~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (202)
T cd04102         160 AEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK  198 (202)
T ss_pred             HHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence            778899988888885532          45555555543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=3.6e-28  Score=174.44  Aligned_cols=159  Identities=30%  Similarity=0.434  Sum_probs=128.2

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ....+||+++|+.|||||||++++..+......||.+.+.....  +  ..+.+.+||++|+..+...|..++.++|++|
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~--~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIK--Y--KGYSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEE--E--TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceee--e--CcEEEEEEeccccccccccceeeccccceeE
Confidence            47889999999999999999999998776665567666554433  3  4567899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------hCCeEEEEccCCCCC
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------YGCLFIECSAKTRVN  164 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~  164 (210)
                      ||+|.++.+.+......+...+.. ....++|++|++||+|+++.  ...+++......      ..+.++.|||.+|.|
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~-~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLND-PELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTS-GGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEecccceeecccccchhhhcch-hhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            999999999999988856555554 33467999999999998754  444444444332      234599999999999


Q ss_pred             HHHHHHHHHHHH
Q 028381          165 VQQCFEELVLKI  176 (210)
Q Consensus       165 i~~~~~~l~~~~  176 (210)
                      +.+.++||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.96  E-value=6.4e-28  Score=163.14  Aligned_cols=166  Identities=20%  Similarity=0.340  Sum_probs=137.6

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      +...++.++|+++|..||||||++++|.+.+.....|+.+.+.....+    ..+.+++||.+|+..+++.|.++|...|
T Consensus        10 ~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestd   85 (185)
T KOG0073|consen   10 QKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTD   85 (185)
T ss_pred             HHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccC
Confidence            345677999999999999999999999999877777788877765544    6789999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc---eec-HHHHHHHHHHhCCeEEEEccCCCC
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVT-KKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~-~~~~~~~~~~~~~~~~~~Sa~~~~  163 (210)
                      ++|+|+|.+++..++.....+...+.. ..-.+.|++|++||.|++..-   .+. .-+...+++...++++-||+.+|+
T Consensus        86 glIwvvDssD~~r~~e~~~~L~~lL~e-erlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge  164 (185)
T KOG0073|consen   86 GLIWVVDSSDRMRMQECKQELTELLVE-ERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE  164 (185)
T ss_pred             eEEEEEECchHHHHHHHHHHHHHHHhh-hhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence            999999999999999887755554442 334568999999999997332   121 123455667788999999999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 028381          164 NVQQCFEELVLKILD  178 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (210)
                      ++.+.++|+++.+.+
T Consensus       165 ~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  165 DLLEGIDWLCDDLMS  179 (185)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999999999877

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=3.1e-28  Score=172.46  Aligned_cols=153  Identities=24%  Similarity=0.403  Sum_probs=116.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      +|+++|++|||||||++++.++.+....++.+.++...  .. ...+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEML--QL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEE--Ee-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            58999999999999999999998876666666544332  22 2457899999999999888898899999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH------HHHhCCeEEEEccCCCCCHHHHH
Q 028381           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF------AREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      +++.++.....++...+.. ....+.|+++|+||+|+...  ...+++...      ....++++++|||++|.|++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          78 SDEARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9999888887734433332 22357999999999998543  122222211      12234579999999999999999


Q ss_pred             HHHHH
Q 028381          170 EELVL  174 (210)
Q Consensus       170 ~~l~~  174 (210)
                      .+|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=5.9e-28  Score=175.81  Aligned_cols=157  Identities=22%  Similarity=0.329  Sum_probs=122.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .+.+||+++|++|||||||++++.++.+..+.++.+.+..  .+.++  .+.+.+||+||+..+...|..+++.+|++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~--~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSE--ELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            3568999999999999999999998887655555554433  33444  3678999999999888888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH----------------hCCeEE
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE----------------YGCLFI  155 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~  155 (210)
                      |+|+++..++.....++...+. .....+.|+++++||+|+..  .+..++++.+...                ...+++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~-~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLS-DEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHc-CccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            9999999888877763444333 23345699999999999864  3455555555532                224689


Q ss_pred             EEccCCCCCHHHHHHHHHHH
Q 028381          156 ECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~  175 (210)
                      +|||+++.|++++|.|+.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999864

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=1.9e-28  Score=174.84  Aligned_cols=154  Identities=22%  Similarity=0.353  Sum_probs=116.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      +|+++|++|||||||++++.+.......++.+.+..  .+..  ..+.+.+||+||+..+...|..+++++|++|+|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            489999999999999999997733344456665433  3333  457899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec----HHHHHHHHHHhC--CeEEEEccCCC------C
Q 028381           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT----KKEGINFAREYG--CLFIECSAKTR------V  163 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~--~~~~~~Sa~~~------~  163 (210)
                      ++..++..+.. |+..+.......++|+++|+||.|++......    ......++.+.+  +.+++|||++|      .
T Consensus        77 s~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          77 SDDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CchhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            99999998887 55555443333578999999999997654211    111122332223  46888999998      8


Q ss_pred             CHHHHHHHHHH
Q 028381          164 NVQQCFEELVL  174 (210)
Q Consensus       164 ~i~~~~~~l~~  174 (210)
                      |+.+.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=2.2e-28  Score=173.00  Aligned_cols=152  Identities=24%  Similarity=0.358  Sum_probs=115.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      ||+++|++++|||||++++..+.+....++.+.+...  +  +...+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVET--V--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEE--E--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            6899999999999999999888776655565555432  2  23457899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHHHHHH
Q 028381           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +++.++......|...+.. ....++|+++|+||+|+.+..  ...++....     ...+.+++++||+++.|++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEE-EELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhc-hhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9988887766645544443 223468999999999986443  122221111     11234699999999999999999


Q ss_pred             HHHH
Q 028381          171 ELVL  174 (210)
Q Consensus       171 ~l~~  174 (210)
                      ++.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.96  E-value=6.3e-28  Score=170.60  Aligned_cols=152  Identities=24%  Similarity=0.375  Sum_probs=119.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      ||+++|++|||||||++++++..+....++.+.+.....  +  ....+.+||+||+..+...+..++..+|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVE--Y--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEE--E--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999999886655556665554332  2  357899999999999988999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCCHHHHHH
Q 028381           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +++.++..... |+..+.......+.|+++|+||+|+....  ..++......     ...++++++||++|.|++++|+
T Consensus        77 ~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          77 SDRERIEEAKE-ELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCHHHHHHHHH-HHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            99999998877 44444333335679999999999986543  2223333322     2345799999999999999999


Q ss_pred             HHHH
Q 028381          171 ELVL  174 (210)
Q Consensus       171 ~l~~  174 (210)
                      +|+.
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=6.3e-28  Score=171.17  Aligned_cols=152  Identities=20%  Similarity=0.305  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-C-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNF-E-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +|+++|++|||||||+++|.+..+ . ...++.+.+...  +  ....+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 2 333466644332  2  234678999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCCHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  166 (210)
                      |++++.++..... |+..+....  ...++|+++|+||+|+.....  .++......     ....+++++||++|.|++
T Consensus        77 D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~  153 (162)
T cd04157          77 DSSDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLD  153 (162)
T ss_pred             eCCcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence            9999999887776 444443221  235799999999999865422  222222111     123458999999999999


Q ss_pred             HHHHHHHH
Q 028381          167 QCFEELVL  174 (210)
Q Consensus       167 ~~~~~l~~  174 (210)
                      ++|+||.+
T Consensus       154 ~~~~~l~~  161 (162)
T cd04157         154 EGVQWLQA  161 (162)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=2.5e-27  Score=171.59  Aligned_cols=157  Identities=20%  Similarity=0.282  Sum_probs=120.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...++|+++|++|||||||++++.++.+..+.++.+.+...  +.+  ..+.+.+||+||+..+...|..++.++|++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEE--LAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            45699999999999999999999988776555555544332  233  34788999999999888899999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------------hCCeEEEEcc
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------------YGCLFIECSA  159 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  159 (210)
                      |+|++++.++......+...+. .....++|+++|+||+|++..  +..+++......            ....+++|||
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~-~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLS-DEELATVPFLILGNKIDAPYA--ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHc-ChhhcCCCEEEEEeCccccCC--CCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            9999999988888773443333 222357899999999998642  444444433311            1234999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028381          160 KTRVNVQQCFEELVLK  175 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~  175 (210)
                      +++.|++++++||.+.
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=1.5e-29  Score=173.59  Aligned_cols=172  Identities=28%  Similarity=0.488  Sum_probs=159.0

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      +...+..||++|+|..++||||+|+++|.+-|...+. +.+.++....+.+.+..+.+.+||++|+++++.+..++++++
T Consensus        14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga   93 (246)
T KOG4252|consen   14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA   93 (246)
T ss_pred             chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence            3455788999999999999999999999999987776 999999988899999999999999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      .+.++||+.+|..||+.... |.+.+..-  ...+|.++|-||+|+.+...+...+++.+++..++.++.+|+++..|+.
T Consensus        94 qa~vLVFSTTDr~SFea~~~-w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~  170 (246)
T KOG4252|consen   94 QASVLVFSTTDRYSFEATLE-WYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVM  170 (246)
T ss_pred             cceEEEEecccHHHHHHHHH-HHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhH
Confidence            99999999999999999999 88877653  4569999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCc
Q 028381          167 QCFEELVLKILDTPSL  182 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~~  182 (210)
                      ..|.+|++.+.+...+
T Consensus       171 ~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  171 HVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999877666

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=1.9e-27  Score=169.59  Aligned_cols=152  Identities=26%  Similarity=0.422  Sum_probs=113.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFE-------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +|+++|++|+|||||++++.+....       ...++.+..+..  +.+  ....+.+||+||+..+...+..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IEV--GNARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            5899999999999999999754321       122244443332  333  35789999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-------hCCeEEEEccCC
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-------YGCLFIECSAKT  161 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~  161 (210)
                      +++|+|++++.++..... |+..+.......++|+++|+||+|+...  ...++...+...       .+++++++||++
T Consensus        77 ~v~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  153 (167)
T cd04160          77 IIYVIDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE  153 (167)
T ss_pred             EEEEEECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence            999999999888888877 4444433333467999999999998653  333444444332       245799999999


Q ss_pred             CCCHHHHHHHHHH
Q 028381          162 RVNVQQCFEELVL  174 (210)
Q Consensus       162 ~~~i~~~~~~l~~  174 (210)
                      |.|++++++||.+
T Consensus       154 g~gv~e~~~~l~~  166 (167)
T cd04160         154 GTGVREGIEWLVE  166 (167)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999999875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=4.3e-26  Score=163.45  Aligned_cols=144  Identities=40%  Similarity=0.635  Sum_probs=125.2

Q ss_pred             CCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhh
Q 028381           37 DNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY  115 (210)
Q Consensus        37 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  115 (210)
                      +.|.+.+ +|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+.. |+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHh
Confidence            3455444 588888888888899999999999999999999999999999999999999999999999987 77777653


Q ss_pred             ccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028381          116 STNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       116 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      . ..++|+++|+||+|+...+.+..+++..++...+..++++||++|.|++++|.+|++.+.+..+.
T Consensus        82 ~-~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         82 R-GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             c-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            3 35789999999999976667788888888888899999999999999999999999999876655

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=3.9e-26  Score=174.40  Aligned_cols=174  Identities=25%  Similarity=0.394  Sum_probs=134.0

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-------------CeEEEEEEEeCCCcc
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-------------GKKLKLAIWDTAGQE   73 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~   73 (210)
                      ..+....+||+++|+.|||||||+++|.++.+...+ ++.+.++....+.++             +..+.+.|||++|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            455677899999999999999999999999886654 488888766666654             256889999999999


Q ss_pred             ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhcc-----------CCCCcEEEEEeCCCCCCCc---e--
Q 028381           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-----------NQDCIKLLVGNKVDKESER---V--  137 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~Dl~~~~---~--  137 (210)
                      .+..++..+++++|++|+|||+++..+++.+.. |+..+.....           ..++|++||+||+|+...+   .  
T Consensus        95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s  173 (334)
T PLN00023         95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSS  173 (334)
T ss_pred             hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccc
Confidence            999999999999999999999999999999988 8888876532           1358999999999996543   2  


Q ss_pred             -ecHHHHHHHHHHhCCe-E---------------EEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028381          138 -VTKKEGINFAREYGCL-F---------------IECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       138 -~~~~~~~~~~~~~~~~-~---------------~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                       +..+++++|+...++. .               +...|+.+.--.+.+....+.+.+++=.
T Consensus       174 ~~~~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (334)
T PLN00023        174 GNLVDAARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYF  235 (334)
T ss_pred             cccHHHHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHhh
Confidence             3578899999988742 0               2234555554444455555555544433

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=1e-25  Score=161.61  Aligned_cols=155  Identities=22%  Similarity=0.368  Sum_probs=117.7

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      +....++|+++|++|||||||++++.+..+....++.+.+...  +..+  ...+.+||+||+..+...+..+++.+|++
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~--i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKT--VQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            3455899999999999999999999988776555666654433  3333  36789999999988888888889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--------CeEEEEccCC
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--------CLFIECSAKT  161 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~  161 (210)
                      ++|+|+++..++.....++...+.. ....++|+++++||.|+.....  .++   +....+        .+++++||++
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~--~~~---i~~~l~~~~~~~~~~~~~~~Sa~~  159 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEE-EKLAGVPVLVFANKQDLATAAP--AEE---IAEALNLHDLRDRTWHIQACSAKT  159 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECCCCccCCC--HHH---HHHHcCCcccCCCeEEEEEeECCC
Confidence            9999999988888777644444433 2345699999999999864322  222   222222        2478999999


Q ss_pred             CCCHHHHHHHHHH
Q 028381          162 RVNVQQCFEELVL  174 (210)
Q Consensus       162 ~~~i~~~~~~l~~  174 (210)
                      +.|++++|+||.+
T Consensus       160 ~~gi~~~~~~l~~  172 (173)
T cd04155         160 GEGLQEGMNWVCK  172 (173)
T ss_pred             CCCHHHHHHHHhc
Confidence            9999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=1.5e-25  Score=159.90  Aligned_cols=156  Identities=18%  Similarity=0.110  Sum_probs=106.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------chhhcccCc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---------LTSSYYRGA   86 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~~~   86 (210)
                      +|+++|++|+|||||+++|.+..+... +..+.+............+.+.+|||||......         ........+
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVA-PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR   80 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccC-CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence            799999999999999999998876421 2222222222222333467899999999742110         001111236


Q ss_pred             cEEEEEEECCCcccH--HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCC
Q 028381           87 QGIIMVYDVTRRDTF--TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN  164 (210)
Q Consensus        87 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (210)
                      |++++|+|+++..++  ..... |...+...  ..+.|+++|+||+|+.....+..  ...+....+.+++++||+++.|
T Consensus        81 d~~l~v~d~~~~~~~~~~~~~~-~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          81 AAVLFLFDPSETCGYSLEEQLS-LFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             CcEEEEEeCCcccccchHHHHH-HHHHHHhh--cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence            899999999987654  44444 66666542  24789999999999965443332  4455555567899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028381          165 VQQCFEELVLKIL  177 (210)
Q Consensus       165 i~~~~~~l~~~~~  177 (210)
                      ++++|+++.+.++
T Consensus       156 i~~l~~~l~~~~~  168 (168)
T cd01897         156 VDEVKNKACELLL  168 (168)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=1.5e-25  Score=161.64  Aligned_cols=153  Identities=23%  Similarity=0.281  Sum_probs=112.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC-------CCCCC-C------CceeeeEEEEEEE-----CCeEEEEEEEeCCCccccc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN-------FEELS-P------TIGVDFKVKYVDV-----GGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~-------~~~~~-~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~~~   76 (210)
                      +|+++|++++|||||+++|++..       +...+ +      +.+.++.......     ++..+.+.+|||||+..+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998642       11111 1      1233333322222     5678899999999999998


Q ss_pred             cchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe---
Q 028381           77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL---  153 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---  153 (210)
                      ..+..+++.+|++|+|+|+++..++..... |....     ..++|+++|+||+|+....  ..+....+....+++   
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~~-----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~  153 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLAL-----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSE  153 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHHH-----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCccc
Confidence            888889999999999999999877666654 43322     2468999999999986432  122234555555653   


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHH
Q 028381          154 FIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       154 ~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      ++++||++|.|++++|+++.+.+
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         154 AILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEEeeccCCCCHHHHHHHHHhhC
Confidence            89999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=1.2e-25  Score=158.51  Aligned_cols=151  Identities=25%  Similarity=0.409  Sum_probs=114.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      |+++|++|||||||++++.+..+...+. +.+..+..  +..+  .+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7899999999999999999988765443 55544432  2332  37899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHHHHHH
Q 028381           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      ++..++......|...+.. ....++|+++|+||.|+......  .......     ....++++++|++++.|++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          78 ADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            9988888777634444332 33457899999999998654322  1111111     12235789999999999999999


Q ss_pred             HHHH
Q 028381          171 ELVL  174 (210)
Q Consensus       171 ~l~~  174 (210)
                      ++.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=2.8e-25  Score=158.80  Aligned_cols=156  Identities=18%  Similarity=0.198  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeEEEEEEEeCCCccc----cccchhhc---ccCc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKKLKLAIWDTAGQER----FRTLTSSY---YRGA   86 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~   86 (210)
                      +|+++|++|||||||+++|.+.... ....++.+...  ..+.+.+ ...+.+|||||...    ...+...+   +..+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcc-ccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            6899999999999999999976531 11111112111  1122222 24789999999632    11222233   3469


Q ss_pred             cEEEEEEECCCc-ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCeEEEEccCCCC
Q 028381           87 QGIIMVYDVTRR-DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRV  163 (210)
Q Consensus        87 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~  163 (210)
                      |++++|+|++++ .++..+.. |...+..... ..++|+++|+||+|+...... .+....+.... +.+++++||+++.
T Consensus        80 d~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  157 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGE  157 (170)
T ss_pred             CEEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCC
Confidence            999999999999 78888776 7776655422 246899999999998655443 23344455553 6789999999999


Q ss_pred             CHHHHHHHHHHH
Q 028381          164 NVQQCFEELVLK  175 (210)
Q Consensus       164 ~i~~~~~~l~~~  175 (210)
                      |++++|+++.+.
T Consensus       158 gi~~l~~~i~~~  169 (170)
T cd01898         158 GLDELLRKLAEL  169 (170)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=2.6e-24  Score=151.36  Aligned_cols=158  Identities=28%  Similarity=0.438  Sum_probs=122.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|+|||||++++.+..+...+ ++.+.++....+..++..+.+.+||+||+..+...+...+..+++++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            379999999999999999999988854433 3666666665566777668899999999999988888889999999999


Q ss_pred             EECCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           93 YDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        93 ~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      +|.... .++......|...+...... +.|+++++||.|+.... ...+....+......+++++||+++.|++++|++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~  158 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI  158 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence            998887 66766663366666554433 78999999999996544 3333333444444567999999999999999998


Q ss_pred             HH
Q 028381          172 LV  173 (210)
Q Consensus       172 l~  173 (210)
                      |.
T Consensus       159 l~  160 (161)
T TIGR00231       159 VE  160 (161)
T ss_pred             hh
Confidence            63

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=9.7e-25  Score=170.26  Aligned_cols=165  Identities=17%  Similarity=0.134  Sum_probs=117.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECC-eEEEEEEEeCCCccc-------cccchhhcccC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGG-KKLKLAIWDTAGQER-------FRTLTSSYYRG   85 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~-------~~~~~~~~~~~   85 (210)
                      ...|+|+|.|+||||||+++|++.+.. ....+.+|.......+.. ....+.+||+||...       +...+...+..
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            357899999999999999999976532 222222222222222211 235689999999632       11223334668


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccC-CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCC
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN-QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN  164 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (210)
                      ++++++|+|+++.++++.+.. |...+..+... .++|+++|+||+|+........+....+....+.+++++||+++.|
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G  315 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG  315 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence            999999999998888888877 88888765322 4689999999999976554444444555555678899999999999


Q ss_pred             HHHHHHHHHHHHHcCC
Q 028381          165 VQQCFEELVLKILDTP  180 (210)
Q Consensus       165 i~~~~~~l~~~~~~~~  180 (210)
                      +++++++|.+.+.+..
T Consensus       316 I~eL~~~L~~~l~~~~  331 (335)
T PRK12299        316 LDELLRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999886543

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.7e-25  Score=154.18  Aligned_cols=163  Identities=20%  Similarity=0.304  Sum_probs=135.8

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ......+|+++|..++||||++++|..++.....||.|..+....+    ..+.+++||.+|+..++..|..++.+.+++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence            3467899999999999999999999999988888899988877666    478999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCC
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVN  164 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  164 (210)
                      |||+|.+|++.+...+..+...+.. ..-.+.|+++.+||.|++.+..  ..++.....     ...-.+..|+|.+|+|
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~-~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAE-PELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcC-cccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeecccccccc
Confidence            9999999999999998866666654 3356899999999999976533  223222222     2334588999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 028381          165 VQQCFEELVLKILDT  179 (210)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (210)
                      +.+.++|+.+.+.+.
T Consensus       166 L~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  166 LYEGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999988553

>PRK15494 era GTPase Era; Provisional

Probab=99.93  E-value=8.2e-25  Score=171.70  Aligned_cols=171  Identities=20%  Similarity=0.239  Sum_probs=120.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-ccc-------hhhcc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-RTL-------TSSYY   83 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~-------~~~~~   83 (210)
                      .+.++|+++|++|||||||+++|.+..+..+.+..++|.......+.....++.+|||||.... ..+       ....+
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l  129 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL  129 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence            4567999999999999999999999888655554444433222222223457899999997432 221       11246


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CeEEEEccCC
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAKT  161 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  161 (210)
                      ..+|++++|+|..+  ++......|+..+..    .+.|.++|+||+|+...   ...++..++...+  ..++++||++
T Consensus       130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt  200 (339)
T PRK15494        130 HSADLVLLIIDSLK--SFDDITHNILDKLRS----LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS  200 (339)
T ss_pred             hhCCEEEEEEECCC--CCCHHHHHHHHHHHh----cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence            78999999999765  344444435555543    24577889999998643   2344555555444  5799999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcccccccCcc
Q 028381          162 RVNVQQCFEELVLKILDTPSLLAEGSKGLK  191 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~  191 (210)
                      |.|++++|+++.+.+.+.+..++.+...-.
T Consensus       201 g~gv~eL~~~L~~~l~~~~~~~~~~~~td~  230 (339)
T PRK15494        201 GKNIDGLLEYITSKAKISPWLYAEDDITDL  230 (339)
T ss_pred             ccCHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            999999999999999999888877654433

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.93  E-value=3.6e-24  Score=143.43  Aligned_cols=170  Identities=23%  Similarity=0.305  Sum_probs=143.2

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEE-ECCeEEEEEEEeCCCcccc-ccchhhcccC
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVD-VGGKKLKLAIWDTAGQERF-RTLTSSYYRG   85 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~   85 (210)
                      -.+..||+++|..++|||++++.|+.+......+   |.+. ++...+. -.+.+-.+.++||.|.... ..+-+.++.-
T Consensus         6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~   84 (198)
T KOG3883|consen    6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF   84 (198)
T ss_pred             hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence            3567899999999999999999998776543332   4433 3333333 2445567999999997766 5567778899


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCH
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (210)
                      +|++++||+..+++||+.+.. +...|..+..+..+|++|++||+|+.++..++.+.+..|+++..+..+++++.+...+
T Consensus        85 aDafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL  163 (198)
T KOG3883|consen   85 ADAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSL  163 (198)
T ss_pred             CceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence            999999999999999999988 8889998888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCc
Q 028381          166 QQCFEELVLKILDTPSL  182 (210)
Q Consensus       166 ~~~~~~l~~~~~~~~~~  182 (210)
                      -+.|..+..++...++.
T Consensus       164 ~epf~~l~~rl~~pqsk  180 (198)
T KOG3883|consen  164 YEPFTYLASRLHQPQSK  180 (198)
T ss_pred             hhHHHHHHHhccCCccc
Confidence            99999999999776644

>TIGR00436 era GTP-binding protein Era

Probab=99.93  E-value=1.4e-24  Score=165.91  Aligned_cols=165  Identities=17%  Similarity=0.083  Sum_probs=116.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccCcc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRGAQ   87 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d   87 (210)
                      +|+++|+||||||||+|+|++.+....++.+++|.............++.+|||||......        .....+..+|
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD   81 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD   81 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence            68999999999999999999988765555444443322222222335689999999654221        1234578999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ  166 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  166 (210)
                      ++++|+|+++..+..   ..+...+..    .+.|+++|+||+|+...... ......+....+. +++++||++|.|++
T Consensus        82 vvl~VvD~~~~~~~~---~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        82 LILFVVDSDQWNGDG---EFVLTKLQN----LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             EEEEEEECCCCCchH---HHHHHHHHh----cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            999999999877664   224444432    46899999999998643222 2233444444444 79999999999999


Q ss_pred             HHHHHHHHHHHcCCCccccccc
Q 028381          167 QCFEELVLKILDTPSLLAEGSK  188 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~~~~~  188 (210)
                      ++++++.+.+...+..++.+..
T Consensus       154 ~L~~~l~~~l~~~~~~~~~~~~  175 (270)
T TIGR00436       154 FLAAFIEVHLPEGPFRYPEDYV  175 (270)
T ss_pred             HHHHHHHHhCCCCCCCCCCccc
Confidence            9999999999877776665533

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01878 HflX HflX subfamily

Probab=99.92  E-value=2.7e-24  Score=158.23  Aligned_cols=157  Identities=18%  Similarity=0.121  Sum_probs=109.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--c------hhhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--L------TSSY   82 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--~------~~~~   82 (210)
                      ...++|+++|++|||||||++++++..+.. ..+....+.....+.+++. ..+.+||+||......  .      ....
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~  117 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE  117 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999876422 1122222222233333332 3789999999732111  0      1123


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC
Q 028381           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (210)
                      +..+|++++|+|++++.++..... |...+... ...++|+++|+||+|+.......     .+....+.+++++||+++
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~  190 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIET-VEKVLKEL-GAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTG  190 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHHH-HHHHHHHc-CcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCC
Confidence            568999999999999988877655 66666543 23468999999999986543322     334455678999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028381          163 VNVQQCFEELVLKI  176 (210)
Q Consensus       163 ~~i~~~~~~l~~~~  176 (210)
                      .|+++++++|.+.+
T Consensus       191 ~gi~~l~~~L~~~~  204 (204)
T cd01878         191 EGLDELLEAIEELL  204 (204)
T ss_pred             CCHHHHHHHHHhhC
Confidence            99999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=1.4e-24  Score=150.76  Aligned_cols=134  Identities=18%  Similarity=0.210  Sum_probs=98.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc-----ccccchhhcccCccEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE-----RFRTLTSSYYRGAQGII   90 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~i   90 (210)
                      ||+++|++|||||||+++|.+..+. ..++.+.++       .     -.+||+||..     .+..... .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            8999999999999999999987652 222322211       1     1689999973     2233322 478999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQQCF  169 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~  169 (210)
                      +|||++++.++... . |....       ..|+++|+||+|+.+ .....+++..++...+. +++++||+++.|++++|
T Consensus        68 lv~d~~~~~s~~~~-~-~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        68 LVQSATDPESRFPP-G-FASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV  137 (142)
T ss_pred             EEecCCCCCcCCCh-h-HHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence            99999999987652 2 43321       239999999999864 23455666777777776 79999999999999999


Q ss_pred             HHHH
Q 028381          170 EELV  173 (210)
Q Consensus       170 ~~l~  173 (210)
                      .++.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            9874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=4.9e-24  Score=151.35  Aligned_cols=153  Identities=19%  Similarity=0.157  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC---CCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN---FEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .|+++|++|||||||+++|.+..   +.... +....+.....+.+.. ...+.+|||||++.+.......++.+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            68999999999999999999643   22211 1222222222333332 4579999999998887666677889999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHH---hCCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFARE---YGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~  166 (210)
                      |+|+++....+ ... .+..+..   ....|+++|+||+|+.....  ...++...+...   .+.+++++||+++.|++
T Consensus        81 V~d~~~~~~~~-~~~-~~~~~~~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  155 (164)
T cd04171          81 VVAADEGIMPQ-TRE-HLEILEL---LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIE  155 (164)
T ss_pred             EEECCCCccHh-HHH-HHHHHHH---hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHH
Confidence            99998732211 111 1112221   11248999999999965431  122334444444   35789999999999999


Q ss_pred             HHHHHHHH
Q 028381          167 QCFEELVL  174 (210)
Q Consensus       167 ~~~~~l~~  174 (210)
                      ++++++..
T Consensus       156 ~l~~~l~~  163 (164)
T cd04171         156 ELKEYLDE  163 (164)
T ss_pred             HHHHHHhh
Confidence            99988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=1.5e-23  Score=146.22  Aligned_cols=154  Identities=50%  Similarity=0.791  Sum_probs=120.8

Q ss_pred             EEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCC
Q 028381           19 MIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        19 i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                      ++|++|+|||||++++.+... .....+...+..............+.+||+||...+...+...+..+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998877 3443333366777777777778999999999988888877888999999999999999


Q ss_pred             cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           98 RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKE-GINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        98 ~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      +.++..... |...........++|+++++||.|+.......... ..........+++++|+.++.|+.+++++|.
T Consensus        81 ~~~~~~~~~-~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          81 RESFENVKE-WLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHH-HHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            998888877 42222223446679999999999986554443332 3344455578899999999999999999985

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=2.7e-23  Score=154.53  Aligned_cols=170  Identities=40%  Similarity=0.589  Sum_probs=135.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|..+.+...++ +.+..+...........+.+.+|||+|++.+...+..++.+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            3999999999999999999999999987776 666666666666665588999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHh---CCeEEEE
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREY---GCLFIEC  157 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~  157 (210)
                      +|..+..++..+...|...+..... ...|+++++||+|+....            ..............   ...++++
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            9999977777777779988876432 468999999999996553            22222222222222   2238999


Q ss_pred             ccC--CCCCHHHHHHHHHHHHHcCCCccc
Q 028381          158 SAK--TRVNVQQCFEELVLKILDTPSLLA  184 (210)
Q Consensus       158 Sa~--~~~~i~~~~~~l~~~~~~~~~~~~  184 (210)
                      |++  .+.++.++|..++..+.+......
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~~  192 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEIEKLV  192 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence            999  999999999999999976654443

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.1e-23  Score=139.16  Aligned_cols=157  Identities=24%  Similarity=0.370  Sum_probs=133.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +.++|+.+|..++||||++..|+.+......+|.|..+....+    ..+.+++||.+|+...+.+|+.++.+..++|+|
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            4789999999999999999999998887777888887776655    678999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-----CeEEEEccCCCCCHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-----CLFIECSAKTRVNVQQ  167 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  167 (210)
                      +|..+.+..+..++.+...+.. ..-.+.|++|.+||.|++++  ...+++..+.....     ..+.++++.++.|+.+
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~-~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIIND-REMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCC-HhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            9999999999998878777765 34557899999999999865  44555555544332     3388999999999999


Q ss_pred             HHHHHHHHH
Q 028381          168 CFEELVLKI  176 (210)
Q Consensus       168 ~~~~l~~~~  176 (210)
                      -|.|+.+.+
T Consensus       169 glswlsnn~  177 (180)
T KOG0071|consen  169 GLSWLSNNL  177 (180)
T ss_pred             HHHHHHhhc
Confidence            999998865

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=3.3e-24  Score=157.40  Aligned_cols=155  Identities=20%  Similarity=0.228  Sum_probs=103.9

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc-----------cccccch
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-----------ERFRTLT   79 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----------~~~~~~~   79 (210)
                      ....++|+++|++|+|||||+++|.+..+. ....++.++....+...    .+.+|||||.           +.+...+
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            345689999999999999999999987754 32344555544444333    5899999993           4444444


Q ss_pred             hhcc----cCccEEEEEEECCCcccHHH---------HHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q 028381           80 SSYY----RGAQGIIMVYDVTRRDTFTN---------LSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF  146 (210)
Q Consensus        80 ~~~~----~~~d~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  146 (210)
                      ..++    ..++++++|+|.++...+..         ....+...+.    ..++|+++|+||+|+....   .+...++
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~p~iiv~NK~Dl~~~~---~~~~~~~  153 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----ELGIPPIVAVNKMDKIKNR---DEVLDEI  153 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----HcCCCeEEEEECccccCcH---HHHHHHH
Confidence            4443    34678889998765322100         0011222222    3478999999999986443   2344555


Q ss_pred             HHHhCC---------eEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          147 AREYGC---------LFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       147 ~~~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ....+.         +++++||++| |+++++++|.+.+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            555554         4899999999 999999999998743

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.91  E-value=1.9e-23  Score=147.14  Aligned_cols=147  Identities=23%  Similarity=0.200  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhcccCc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSYYRGA   86 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~~   86 (210)
                      ++|+++|++|+|||||++++++..........+.+.......+......+.+|||||.......        ....+..+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   81 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA   81 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence            5899999999999999999998775333332233222222222223457899999997554321        23456789


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |++++|+|++++.+...... +..       ....|+++|+||+|+......       .....+.+++++||+++.|++
T Consensus        82 ~~~v~v~d~~~~~~~~~~~~-~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          82 DLVLFVIDASRGLDEEDLEI-LEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             CEEEEEEECCCCCCHHHHHH-HHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            99999999999887766544 221       346899999999999654433       334456789999999999999


Q ss_pred             HHHHHHHHHH
Q 028381          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=6.5e-23  Score=146.21  Aligned_cols=156  Identities=19%  Similarity=0.133  Sum_probs=107.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .|+++|++|+|||||+++|....+..... ....+.....+... +....+.+|||||+..+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999887755422 22222222223322 13577899999999888888888889999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-HHHHHHHHH------HhCCeEEEEccCCCCCHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-KKEGINFAR------EYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~i~  166 (210)
                      |+++........  ....+.    ..++|+++|+||+|+....... .+....+..      ....+++++|++++.|++
T Consensus        82 d~~~~~~~~~~~--~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (168)
T cd01887          82 AADDGVMPQTIE--AIKLAK----AANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID  155 (168)
T ss_pred             ECCCCccHHHHH--HHHHHH----HcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence            999864322222  112222    2468999999999986432111 111111111      123579999999999999


Q ss_pred             HHHHHHHHHHH
Q 028381          167 QCFEELVLKIL  177 (210)
Q Consensus       167 ~~~~~l~~~~~  177 (210)
                      ++++++.+...
T Consensus       156 ~l~~~l~~~~~  166 (168)
T cd01887         156 DLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHHhhh
Confidence            99999988653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=3.6e-24  Score=148.56  Aligned_cols=148  Identities=18%  Similarity=0.230  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhcc--cCc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYY--RGA   86 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~   86 (210)
                      |+|+++|.||||||||+|+|++.+. .....+|.|.......+......+.++|+||...+.+      ....++  ...
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~   79 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP   79 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence            6899999999999999999998873 3444566666655544433336788899999433222      223333  589


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |++++|+|+++.+   .... +...+.    ..++|+++|+||+|......+.. +...+....++|++++||+++.|++
T Consensus        80 D~ii~VvDa~~l~---r~l~-l~~ql~----e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~  150 (156)
T PF02421_consen   80 DLIIVVVDATNLE---RNLY-LTLQLL----ELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGID  150 (156)
T ss_dssp             SEEEEEEEGGGHH---HHHH-HHHHHH----HTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred             CEEEEECCCCCHH---HHHH-HHHHHH----HcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHH
Confidence            9999999998743   3222 223333    34689999999999854433322 2566777789999999999999999


Q ss_pred             HHHHHH
Q 028381          167 QCFEEL  172 (210)
Q Consensus       167 ~~~~~l  172 (210)
                      ++++.|
T Consensus       151 ~L~~~I  156 (156)
T PF02421_consen  151 ELKDAI  156 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHhhC
Confidence            998865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=5.1e-23  Score=145.27  Aligned_cols=147  Identities=16%  Similarity=0.213  Sum_probs=106.2

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhccc--CccEE
Q 028381           19 MIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYYR--GAQGI   89 (210)
Q Consensus        19 i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--~~d~~   89 (210)
                      ++|++|+|||||++++.+..+. ..++....+.....+.+++  ..+.+|||||...+..      ++..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            5899999999999999987632 2233333334444455554  5789999999876554      2445554  89999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|+|+.+......    |...+.    ..++|+++|+||+|+.....+... ...+....+.+++++||+++.|+++++
T Consensus        79 i~v~d~~~~~~~~~----~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~  149 (158)
T cd01879          79 VNVVDATNLERNLY----LTLQLL----ELGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELK  149 (158)
T ss_pred             EEEeeCCcchhHHH----HHHHHH----HcCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHH
Confidence            99999998654322    322332    236899999999999765444333 456677778999999999999999999


Q ss_pred             HHHHHHH
Q 028381          170 EELVLKI  176 (210)
Q Consensus       170 ~~l~~~~  176 (210)
                      .++.+.+
T Consensus       150 ~~l~~~~  156 (158)
T cd01879         150 DAIAELA  156 (158)
T ss_pred             HHHHHHh
Confidence            9998864

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.90  E-value=3.7e-23  Score=151.00  Aligned_cols=158  Identities=20%  Similarity=0.221  Sum_probs=110.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc--CCCCCCC-------------CCceeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS--DNFEELS-------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT   79 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   79 (210)
                      -+|+++|++++|||||+++|++  +.+...+             .+.+.++......+.+..+.+.+|||||++.+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  4443322             134555555555556667889999999999999889


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHH-------hC
Q 028381           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFARE-------YG  151 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~  151 (210)
                      ..+++.+|++++|+|+++.. +..... ++..+.    ..++|+++|+||+|+..... ...+++..+...       .+
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~-~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRF-VLKKAL----ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD  156 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHH-HHHHHH----HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence            99999999999999998753 222222 333332    24689999999999964332 123344444422       26


Q ss_pred             CeEEEEccCCCCCHHHH------HHHHHHHHHc
Q 028381          152 CLFIECSAKTRVNVQQC------FEELVLKILD  178 (210)
Q Consensus       152 ~~~~~~Sa~~~~~i~~~------~~~l~~~~~~  178 (210)
                      ++++++||++|.|+.+.      ++++++.+..
T Consensus       157 ~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~  189 (194)
T cd01891         157 FPVLYASAKNGWASLNLEDPSEDLEPLFDTIIE  189 (194)
T ss_pred             cCEEEeehhccccccccccchhhHHHHHHHHHh
Confidence            78999999999887433      4555555543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=1.8e-23  Score=150.10  Aligned_cols=155  Identities=23%  Similarity=0.251  Sum_probs=103.7

Q ss_pred             EEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc----ccc---hhhcccCccEEE
Q 028381           19 MIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF----RTL---TSSYYRGAQGII   90 (210)
Q Consensus        19 i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~---~~~~~~~~d~~i   90 (210)
                      ++|++|||||||+++|.+... ...++....+.....+.+. ....+.+||+||....    ...   +...+..+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998864 1122211111111222233 1456899999996321    122   233467899999


Q ss_pred             EEEECCCc------ccHHHHHHHHHHHHhhhccC------CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEc
Q 028381           91 MVYDVTRR------DTFTNLSDVWAKEIDLYSTN------QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus        91 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (210)
                      +|+|+.+.      .++..... |...+......      .+.|+++|+||+|+..................+.+++++|
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            99999988      46666655 55555543221      4689999999999965544333322334444567799999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 028381          159 AKTRVNVQQCFEELVLK  175 (210)
Q Consensus       159 a~~~~~i~~~~~~l~~~  175 (210)
                      |+++.|++++++++.+.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=3.1e-23  Score=139.75  Aligned_cols=114  Identities=33%  Similarity=0.620  Sum_probs=90.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFE---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ||+|+|++|||||||+++|.+..+.   ...+..+.++.............+.+||++|.+.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988876   2223555556555667778887899999999998888888889999999999


Q ss_pred             EECCCcccHHHHHHH--HHHHHhhhccCCCCcEEEEEeCCC
Q 028381           93 YDVTRRDTFTNLSDV--WAKEIDLYSTNQDCIKLLVGNKVD  131 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D  131 (210)
                      ||++++.+++.+..+  |+..+..  ...++|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~--~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRK--RDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHH--HSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeccC
Confidence            999999999998663  4444443  245699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=8.1e-23  Score=159.40  Aligned_cols=160  Identities=18%  Similarity=0.145  Sum_probs=111.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc----cc---hhhcccC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR----TL---TSSYYRG   85 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~---~~~~~~~   85 (210)
                      ...|+++|.|+||||||+++|+..... ..++.+......-.+.+++ ...+.+||+||.....    .+   +...+..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            367999999999999999999976532 1222111111222223322 3678999999964221    22   2233567


Q ss_pred             ccEEEEEEECCCc---ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028381           86 AQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        86 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (210)
                      ++++++|+|+++.   ++++.+.. |..++..+.. ..++|++||+||+|+..... ..+..+.+....+.+++++||++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAkt  313 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALT  313 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccC
Confidence            9999999999986   56777766 7766665432 24689999999999965533 23344555556678899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028381          162 RVNVQQCFEELVLKI  176 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (210)
                      +.|+++++.++.+.+
T Consensus       314 g~GI~eL~~~I~~~l  328 (329)
T TIGR02729       314 GEGLDELLYALAELL  328 (329)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=1.2e-22  Score=164.07  Aligned_cols=152  Identities=24%  Similarity=0.229  Sum_probs=111.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSS   81 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~   81 (210)
                      ...++|+++|++|+|||||+|+|++.....+...++++.  ....+.+++  ..+.+|||||...+...        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            456899999999999999999999876543444334333  334444544  55789999998654432        234


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028381           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (210)
                      .++.+|++++|+|++++.+++..   |+..+.    ..++|+++|+||+|+...      ....+....+.+++++||++
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~---~l~~~~----~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~  345 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF---LIIDLN----KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ  345 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH---HHHHHh----hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec
Confidence            67899999999999998887654   443332    246899999999998643      12344556678899999998


Q ss_pred             CCCHHHHHHHHHHHHHcC
Q 028381          162 RVNVQQCFEELVLKILDT  179 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~  179 (210)
                       .|++++|+.+.+.+.+.
T Consensus       346 -~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       346 -LKIKALVDLLTQKINAF  362 (442)
T ss_pred             -CCHHHHHHHHHHHHHHH
Confidence             69999999999988654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.90  E-value=2.1e-23  Score=138.81  Aligned_cols=157  Identities=24%  Similarity=0.385  Sum_probs=125.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ....+.++|..++|||||++.+..+.+.+.. |+.|.+.+    .+....+.+.+||.||+..+.++|..+++++++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            4578999999999999999999988876544 47776554    445577889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-----FAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |+|+++++.+...+..+...+.. ..-.++|++|.|||.|++.+  +.......     -.....+-+|-+|+++..|++
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k-~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid  171 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDK-PSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNID  171 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcc-hhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHH
Confidence            99999999998888867666654 44568999999999998755  22222111     112223448999999999999


Q ss_pred             HHHHHHHHHH
Q 028381          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      .+.+|+++..
T Consensus       172 ~~~~Wli~hs  181 (186)
T KOG0075|consen  172 ITLDWLIEHS  181 (186)
T ss_pred             HHHHHHHHHh
Confidence            9999999864

>PRK00089 era GTPase Era; Reviewed

Probab=99.90  E-value=9.9e-23  Score=157.71  Aligned_cols=168  Identities=16%  Similarity=0.134  Sum_probs=116.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc--------cchhhccc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR--------TLTSSYYR   84 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~   84 (210)
                      +.-.|+++|++|||||||+|+|++.+....++.+.++..............+.+|||||.....        ......+.
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            3456999999999999999999998876665544444333332222234789999999964432        22334567


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CeEEEEccCCCC
Q 028381           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRV  163 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  163 (210)
                      .+|++++|+|+++..+.  ....+...+.    ..+.|+++|+||+|+........+....+....+ .+++++||+++.
T Consensus        84 ~~D~il~vvd~~~~~~~--~~~~i~~~l~----~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         84 DVDLVLFVVDADEKIGP--GDEFILEKLK----KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             cCCEEEEEEeCCCCCCh--hHHHHHHHHh----hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            89999999999984322  2221333333    3468999999999996433333334445544444 569999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCccccc
Q 028381          164 NVQQCFEELVLKILDTPSLLAEG  186 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~~~~~~  186 (210)
                      |++++++++.+.+...+..++.+
T Consensus       158 gv~~L~~~L~~~l~~~~~~y~~~  180 (292)
T PRK00089        158 NVDELLDVIAKYLPEGPPYYPED  180 (292)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999997777666554

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=8.4e-23  Score=167.24  Aligned_cols=155  Identities=21%  Similarity=0.189  Sum_probs=110.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhccc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYYR   84 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~   84 (210)
                      ...+|+|+|.+|||||||+++|++........+++.+..............+.+|||||.+.        +...+...++
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            34789999999999999999999887655555666555444443333345688999999752        2233455688


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCC
Q 028381           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRV  163 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  163 (210)
                      .+|++|+|+|+++..++... . |...+.    ..++|+++|+||+|+....   .+....+  ..+. .++++||++|.
T Consensus       117 ~aD~il~VvD~~~~~s~~~~-~-i~~~l~----~~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~  185 (472)
T PRK03003        117 TADAVLFVVDATVGATATDE-A-VARVLR----RSGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR  185 (472)
T ss_pred             hCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence            99999999999998765432 2 444444    2568999999999986432   1222222  2343 35799999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 028381          164 NVQQCFEELVLKILD  178 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (210)
                      |++++|+++.+.+.+
T Consensus       186 gi~eL~~~i~~~l~~  200 (472)
T PRK03003        186 GVGDLLDAVLAALPE  200 (472)
T ss_pred             CcHHHHHHHHhhccc
Confidence            999999999998865

>cd01894 EngA1 EngA1 subfamily

Probab=99.90  E-value=6.4e-23  Score=144.49  Aligned_cols=147  Identities=22%  Similarity=0.153  Sum_probs=99.5

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccCccEE
Q 028381           18 LMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRGAQGI   89 (210)
Q Consensus        18 ~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d~~   89 (210)
                      +++|++|+|||||+++|++..........+.+..............+.+|||||......        .+...++.+|++
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i   80 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI   80 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence            478999999999999999775322222222222222222222346789999999877543        334567889999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQQC  168 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~  168 (210)
                      ++|+|+.+..+.... . +...+.    ..+.|+++|+||+|+......     .......+. +++++|++++.|++++
T Consensus        81 i~v~d~~~~~~~~~~-~-~~~~~~----~~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          81 LFVVDGREGLTPADE-E-IAKYLR----KSKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEeccccCCccHH-H-HHHHHH----hcCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            999999876554432 1 233333    235899999999999654322     222334555 6899999999999999


Q ss_pred             HHHHHHH
Q 028381          169 FEELVLK  175 (210)
Q Consensus       169 ~~~l~~~  175 (210)
                      |+++.+.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=9.1e-23  Score=167.02  Aligned_cols=164  Identities=20%  Similarity=0.173  Sum_probs=113.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCcc----------ccccc-
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQE----------RFRTL-   78 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~-   78 (210)
                      ...++|+++|.+|+|||||+++|++.......+..+++.  ....+.+++.  .+.+|||||..          .+... 
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence            356999999999999999999999887644444333333  3334455554  45799999952          12222 


Q ss_pred             hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHH-HHHHhCCeEE
Q 028381           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGIN-FAREYGCLFI  155 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~  155 (210)
                      ....++.+|++++|+|++++.++....  +...+.    ..++|+|+|+||+|+......  ..+++.. +.....++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  360 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR--VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRV  360 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEE
Confidence            123578999999999999998887764  333332    356899999999999643221  1112222 1222346899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028381          156 ECSAKTRVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      ++||++|.|++++|..+.+.+......+
T Consensus       361 ~~SAk~g~gv~~lf~~i~~~~~~~~~~i  388 (472)
T PRK03003        361 NISAKTGRAVDKLVPALETALESWDTRI  388 (472)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHhcccC
Confidence            9999999999999999998886555543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=3.3e-22  Score=162.60  Aligned_cols=165  Identities=22%  Similarity=0.150  Sum_probs=112.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------hh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-----------TS   80 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~   80 (210)
                      ...++|+++|.+++|||||+++|++.......+..+++.......+......+.+|||||.......           ..
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~  249 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL  249 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence            4569999999999999999999998775444444444443333232222347889999996543321           12


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-H----hCCeEE
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-E----YGCLFI  155 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~  155 (210)
                      ..++.+|++++|+|++++.+.....  +...+.    ..++|+++|+||+|+.... ...++...... .    ..++++
T Consensus       250 ~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       250 KAIERADVVLLVLDATEGITEQDLR--IAGLIL----EAGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHhCCEEEEEEECCCCccHHHHH--HHHHHH----HcCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence            3578899999999999987776553  333332    3468999999999996211 11112221211 1    247899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028381          156 ECSAKTRVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      ++||++|.|++++|+++.+.+.......
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~i  350 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYENANRRI  350 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhcCcC
Confidence            9999999999999999998876554433

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=1e-22  Score=165.19  Aligned_cols=148  Identities=23%  Similarity=0.215  Sum_probs=109.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccc--------hhhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSY   82 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~   82 (210)
                      ..++|+++|++|+|||||+|+|++.+.....+.++++.  ....+.+++  ..+.+|||||...+...        ....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            45899999999999999999999877543333333333  333444444  56899999997654332        2235


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC
Q 028381           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (210)
                      +..+|++++|+|++++.+++.... |..       ..+.|+++|+||+|+.......        ...+.+++++||+++
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~-l~~-------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg  355 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEI-LEE-------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTG  355 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHH-HHh-------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCC
Confidence            788999999999999888775433 432       3468999999999996443221        234567999999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 028381          163 VNVQQCFEELVLKILD  178 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (210)
                      .|++++++++.+.+..
T Consensus       356 ~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        356 EGIDELREAIKELAFG  371 (449)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999998854

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.89  E-value=1.7e-22  Score=135.74  Aligned_cols=175  Identities=25%  Similarity=0.498  Sum_probs=148.9

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ...-.+||.++|++..|||||+-.+.++.+.+.+. +.|.++....+.+.+.++.+.+||.+|++++..+.+.....+-+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            34456999999999999999999999998876665 89999999999999999999999999999999888888889999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC----CCC-ceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK----ESE-RVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl----~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (210)
                      ++++||++.+.++..+.. |.+..+. .++.-+| |+||+|.|+    +.. ..-...+++.+++-++++.+.||+..+.
T Consensus        96 IlFmFDLt~r~TLnSi~~-WY~QAr~-~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sI  172 (205)
T KOG1673|consen   96 ILFMFDLTRRSTLNSIKE-WYRQARG-LNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSI  172 (205)
T ss_pred             EEEEEecCchHHHHHHHH-HHHHHhc-cCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccc
Confidence            999999999999999999 7776654 3455678 788999996    211 1123345788889999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCcccccc
Q 028381          164 NVQQCFEELVLKILDTPSLLAEGS  187 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~~~~~~~  187 (210)
                      |+..+|.-++.+++.-+...++..
T Consensus       173 Nv~KIFK~vlAklFnL~~ti~~~~  196 (205)
T KOG1673|consen  173 NVQKIFKIVLAKLFNLPWTIPEIL  196 (205)
T ss_pred             cHHHHHHHHHHHHhCCceeccccc
Confidence            999999999999998887776543

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=3.7e-22  Score=144.89  Aligned_cols=155  Identities=17%  Similarity=0.139  Sum_probs=110.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCC---------------ceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPT---------------IGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      +|+++|.+|+|||||+++|.+.........               .+.+.......+......+.+||+||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            589999999999999999998766543321               11222222222333456899999999988888888


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHH---------
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFARE---------  149 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~---------  149 (210)
                      ..++.+|++++|+|+.++.+.... . ++....    ..+.|+++|+||+|+......  ..+.+......         
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTR-E-HLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHH-H-HHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            888999999999999887654322 2 333332    257899999999999653221  12233333332         


Q ss_pred             -----hCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          150 -----YGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       150 -----~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                           ...+++++||+++.|+++++.++.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 346799999999999999999999886

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=6.1e-22  Score=165.14  Aligned_cols=157  Identities=21%  Similarity=0.262  Sum_probs=116.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC-------CCCCC-------CCceeeeEEEEEEE-----CCeEEEEEEEeCCCccc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDN-------FEELS-------PTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQER   74 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~-------~~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~   74 (210)
                      .-+|+++|++++|||||+++|+...       +...+       ...+.++....+.+     ++..+.+++|||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4589999999999999999998642       11111       12355554433333     46678999999999999


Q ss_pred             cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--
Q 028381           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC--  152 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--  152 (210)
                      +...+..+++.+|++|+|+|+++..+...... |.....     .++|+++|+||+|+....  ..+...++....+.  
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~-----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~  154 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE-----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDA  154 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH-----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCc
Confidence            99888999999999999999999877776655 443332     367999999999986432  12223444455555  


Q ss_pred             -eEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          153 -LFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       153 -~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                       +++++||++|.|++++|+++.+.+..
T Consensus       155 ~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       155 SEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             ceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence             38999999999999999999988743

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG1159 Era GTPase [General function prediction only]

Probab=99.89  E-value=1.9e-22  Score=150.50  Aligned_cols=172  Identities=19%  Similarity=0.129  Sum_probs=127.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc--------ccchhhcc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF--------RTLTSSYY   83 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~   83 (210)
                      .+.--|+++|.||+|||||+|++.+.+.+..++-+.+|......-+.....++.++||||....        .......+
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            3456789999999999999999999999988886777776666666666889999999994332        23344567


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCC
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTR  162 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  162 (210)
                      ..+|++++|+|+.+...-..  ...+..+.    ..+.|+++++||+|..............+.....+ .++++||++|
T Consensus        84 ~dvDlilfvvd~~~~~~~~d--~~il~~lk----~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          84 KDVDLILFVVDADEGWGPGD--EFILEQLK----KTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             ccCcEEEEEEeccccCCccH--HHHHHHHh----hcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence            89999999999998544321  11233332    24679999999999866555323333333333333 5999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCcccccccC
Q 028381          163 VNVQQCFEELVLKILDTPSLLAEGSKG  189 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~~~~~~~~~~  189 (210)
                      .|++.+.+.+...+.+.+..++.+.-.
T Consensus       158 ~n~~~L~~~i~~~Lpeg~~~yp~d~it  184 (298)
T COG1159         158 DNVDTLLEIIKEYLPEGPWYYPEDQIT  184 (298)
T ss_pred             CCHHHHHHHHHHhCCCCCCcCChhhcc
Confidence            999999999999999999888765443

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.3e-21  Score=156.37  Aligned_cols=162  Identities=19%  Similarity=0.191  Sum_probs=112.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCcccc----ccchh---hcccCc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERF----RTLTS---SYYRGA   86 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~----~~~~~---~~~~~~   86 (210)
                      ..|+|+|.|+||||||+++|++.+.. ....+.+|.......+... ...+.+||+||...-    ..+..   ..+..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            48999999999999999999977632 1112222222222222112 456899999996321    12222   335679


Q ss_pred             cEEEEEEECCCc---ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC
Q 028381           87 QGIIMVYDVTRR---DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus        87 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (210)
                      +++++|+|+++.   ++++.... |..++..+.. ..++|++||+||+|+...    .+....+....+.+++++||+++
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~-i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tg  312 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEK-INKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTG  312 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHH-HHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCC
Confidence            999999999865   56666655 7777766532 246899999999998432    23445566666678999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCc
Q 028381          163 VNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~~~  182 (210)
                      .|+++++.++.+.+.+.+..
T Consensus       313 eGI~eL~~~L~~~l~~~~~~  332 (424)
T PRK12297        313 QGLDELLYAVAELLEETPEF  332 (424)
T ss_pred             CCHHHHHHHHHHHHHhCccc
Confidence            99999999999988776543

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.89  E-value=4.3e-22  Score=156.64  Aligned_cols=154  Identities=21%  Similarity=0.177  Sum_probs=106.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCc-cc--------cccchhh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-ER--------FRTLTSS   81 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-~~--------~~~~~~~   81 (210)
                      ...++|+++|.+|+|||||+|+|++.... ...+....+.....+.+.+ ...+.+|||+|. ..        +... ..
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~t-le  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRAT-LE  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence            35589999999999999999999987642 1222222223334445532 247899999997 21        1111 12


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028381           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (210)
                      .+.++|++++|+|++++.++..... |...+... ...+.|+++|+||+|+.....     ...+ .....+++++||++
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l-~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAkt  336 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEA-VEKVLEEL-GAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKT  336 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHH-HHHHHHHh-ccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccC
Confidence            4678999999999999988777655 55555543 234689999999999864322     1111 11224689999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028381          162 RVNVQQCFEELVLK  175 (210)
Q Consensus       162 ~~~i~~~~~~l~~~  175 (210)
                      +.|+++++++|.+.
T Consensus       337 g~GI~eL~~~I~~~  350 (351)
T TIGR03156       337 GEGLDLLLEAIAER  350 (351)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04163 Era Era subfamily

Probab=99.89  E-value=8e-22  Score=139.98  Aligned_cols=156  Identities=17%  Similarity=0.088  Sum_probs=105.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRG   85 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~   85 (210)
                      ..+|+++|++|+|||||++++.+............+..............+.+||+||......        .....+..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~   82 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD   82 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999876543333222222222233344457889999999654332        22345778


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCeEEEEccCCCCC
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVN  164 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~  164 (210)
                      +|++++|+|++++.+.  ....+...+..    .+.|+++|+||+|+........+....+.... ..+++++|++++.|
T Consensus        83 ~d~i~~v~d~~~~~~~--~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  156 (168)
T cd04163          83 VDLVLFVVDASEPIGE--GDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN  156 (168)
T ss_pred             CCEEEEEEECCCccCc--hHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence            9999999999987222  12213333332    25799999999998643333233333444444 36799999999999


Q ss_pred             HHHHHHHHHHH
Q 028381          165 VQQCFEELVLK  175 (210)
Q Consensus       165 i~~~~~~l~~~  175 (210)
                      +++++++|.+.
T Consensus       157 ~~~l~~~l~~~  167 (168)
T cd04163         157 VDELLEEIVKY  167 (168)
T ss_pred             hHHHHHHHHhh
Confidence            99999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.89  E-value=6.3e-22  Score=145.35  Aligned_cols=160  Identities=19%  Similarity=0.185  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEEC-----------------------------C----
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVG-----------------------------G----   59 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~-----------------------------~----   59 (210)
                      ++|+++|+.|+|||||++.+.+...  .......+.++......+.                             +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            5799999999999999999975421  1111111111111100000                             1    


Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-
Q 028381           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-  138 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-  138 (210)
                      ....+.|||+||++.+...+...+..+|++++|+|++++.........|. .+..   ....|+++|+||+|+...... 
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~-~~~~---~~~~~iiivvNK~Dl~~~~~~~  156 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA-ALEI---MGLKHIIIVQNKIDLVKEEQAL  156 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH-HHHH---cCCCcEEEEEEchhccCHHHHH
Confidence            12678999999998888877788889999999999997421111112122 2221   122478999999999643221 


Q ss_pred             -cHHHHHHHHHHh---CCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          139 -TKKEGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       139 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                       ..+++..++...   +.+++++||+++.|++++|+++.+.+.+
T Consensus       157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence             123334444332   5679999999999999999999887644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01895 EngA2 EngA2 subfamily

Probab=99.88  E-value=1.5e-21  Score=139.57  Aligned_cols=154  Identities=25%  Similarity=0.182  Sum_probs=102.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCeEEEEEEEeCCCcccccc-----------chh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQERFRT-----------LTS   80 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~   80 (210)
                      .++|+++|++|+|||||++++.+..........+.+..  ...+..++  ..+.+||+||......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            57899999999999999999998764332222222222  22233343  4578999999643311           112


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-HHh----CCeEE
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-REY----GCLFI  155 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~----~~~~~  155 (210)
                      ..+..+|++++|+|++++.+.....  +.....    ..+.|+++++||+|+........+...... ...    ..+++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR--IAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIV  153 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH--HHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceE
Confidence            3457899999999999987765432  222222    245899999999999655322222222222 222    36799


Q ss_pred             EEccCCCCCHHHHHHHHHHH
Q 028381          156 ECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~  175 (210)
                      ++||+++.|+++++.++.+.
T Consensus       154 ~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         154 FISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EEeccCCCCHHHHHHHHHHh
Confidence            99999999999999988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01889 SelB_euk SelB subfamily

Probab=99.88  E-value=1.1e-21  Score=143.00  Aligned_cols=158  Identities=18%  Similarity=0.122  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC----CCCCCC------CCceeeeEEEEEE----------ECCeEEEEEEEeCCCccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD----NFEELS------PTIGVDFKVKYVD----------VGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~----~~~~~~------~~~~~~~~~~~~~----------~~~~~~~~~l~D~~g~~~   74 (210)
                      +||+++|++++|||||+++|+..    .+....      .+....+....+.          ..+..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999863    111111      1222222222222          123467899999999866


Q ss_pred             cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHH----
Q 028381           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAR----  148 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~----  148 (210)
                      +..........+|++++|+|+.+......... +. ...    ..+.|+++++||+|+......  ..++......    
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~  154 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGE----ILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE  154 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            54433344567899999999998655444322 22 111    125799999999998643221  1222222211    


Q ss_pred             ---HhCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          149 ---EYGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       149 ---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                         ..+++++++||+++.|++++++++.+.+.-
T Consensus       155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             hcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence               135689999999999999999999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=1e-21  Score=158.99  Aligned_cols=167  Identities=16%  Similarity=0.111  Sum_probs=111.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRG   85 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~   85 (210)
                      ....|+|+|.|+||||||+++|++..... ...+++|.......+......+.+||+||.....       ......+..
T Consensus       158 ~~adV~LVG~PNAGKSTLln~Ls~akpkI-adypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        158 SVADVGLVGFPSAGKSSLISALSAAKPKI-ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             ccceEEEEEcCCCCHHHHHHHHhcCCccc-cccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            34689999999999999999999765421 2223333332222333344679999999953211       112234678


Q ss_pred             ccEEEEEEECCCc----ccHHHHHHHHHHHHhhhc----------cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC
Q 028381           86 AQGIIMVYDVTRR----DTFTNLSDVWAKEIDLYS----------TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG  151 (210)
Q Consensus        86 ~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~----------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  151 (210)
                      +|++|+|+|+++.    +.+..+.. |...+..+.          ...++|++||+||+|+++..... +.........+
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g  314 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARG  314 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcC
Confidence            9999999999863    34444443 444454433          12468999999999996543322 22233344557


Q ss_pred             CeEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028381          152 CLFIECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      .+++++||+++.|+++++.+|.+.+.+.+..
T Consensus       315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~  345 (500)
T PRK12296        315 WPVFEVSAASREGLRELSFALAELVEEARAA  345 (500)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence            8999999999999999999999988776543

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=7.3e-22  Score=139.38  Aligned_cols=140  Identities=17%  Similarity=0.149  Sum_probs=98.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc----chhhcccCccEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT----LTSSYYRGAQGIIM   91 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~~~~~~~~d~~i~   91 (210)
                      +|+++|++|+|||||++++.+.. .....+.+.       .+...    .+||+||......    .....+..+|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~~~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-TLARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-ccCccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            79999999999999999988653 211112221       12222    2699999632222    11233689999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--eEEEEccCCCCCHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC--LFIECSAKTRVNVQQCF  169 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~  169 (210)
                      |+|+++..++...   |+..+     ..++|+++++||+|+...   ..+....++...++  +++++||+++.|++++|
T Consensus        71 v~d~~~~~s~~~~---~~~~~-----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         71 VHGANDPESRLPA---GLLDI-----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             EEeCCCcccccCH---HHHhc-----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            9999988776332   33222     235789999999998542   34556677777775  89999999999999999


Q ss_pred             HHHHHHHHc
Q 028381          170 EELVLKILD  178 (210)
Q Consensus       170 ~~l~~~~~~  178 (210)
                      +++.+.+.+
T Consensus       140 ~~l~~~~~~  148 (158)
T PRK15467        140 DYLASLTKQ  148 (158)
T ss_pred             HHHHHhchh
Confidence            999887643

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.88  E-value=1.8e-22  Score=133.52  Aligned_cols=161  Identities=24%  Similarity=0.340  Sum_probs=125.7

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ..+.+||+++|-.++|||||++.|.+.+.....++.|.....+.+.   .++.+++||.+|+...+..|..++.+.|++|
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~---g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYD---GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeec---CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence            4788999999999999999999999999888888888766555443   4789999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH-HH--HHHHHHhCCeEEEEccCCCCCHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK-EG--INFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~--~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ||+|.+|...|+.+...+...+.. -+-..+|+++.+||.|+.-+..+... ..  ....+.....+.+||+.+++|+.+
T Consensus        91 yVIDS~D~krfeE~~~el~ELlee-eKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~d  169 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEE-EKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTD  169 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhh-hhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence            999999998898887755554443 34567999999999998533221111 00  011112234589999999999999


Q ss_pred             HHHHHHHH
Q 028381          168 CFEELVLK  175 (210)
Q Consensus       168 ~~~~l~~~  175 (210)
                      ..+|+...
T Consensus       170 g~~wv~sn  177 (185)
T KOG0074|consen  170 GSDWVQSN  177 (185)
T ss_pred             cchhhhcC
Confidence            99988643

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=1.5e-21  Score=155.20  Aligned_cols=171  Identities=16%  Similarity=0.129  Sum_probs=116.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCccccc-------cchhhcccCc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFR-------TLTSSYYRGA   86 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~-------~~~~~~~~~~   86 (210)
                      ..|+|+|.||||||||+|+|++.+. .....+.+|.......+... ...+.++|+||...-.       ......+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            4799999999999999999997664 33333334333333222222 3458999999964321       1122347789


Q ss_pred             cEEEEEEECC---CcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CeEEEEccC
Q 028381           87 QGIIMVYDVT---RRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAK  160 (210)
Q Consensus        87 d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  160 (210)
                      |++++|+|++   +...++.... |+..+..+.. ..+.|+++|+||+|+.....+ .+....+....+  .+++++||+
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~-l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARI-IINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHH-HHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            9999999988   4556666655 6666665421 236899999999998644332 233444444444  468999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCccccccc
Q 028381          161 TRVNVQQCFEELVLKILDTPSLLAEGSK  188 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~  188 (210)
                      ++.|+++++++|.+.+.+.+..++.+..
T Consensus       317 tg~GIdeLl~~I~~~L~~~~~~~~~~~~  344 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEENPREEAEEAE  344 (390)
T ss_pred             CCcCHHHHHHHHHHHhhhCcccCCcccc
Confidence            9999999999999999887766655443

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.87  E-value=6.2e-21  Score=139.95  Aligned_cols=119  Identities=18%  Similarity=0.314  Sum_probs=89.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc-cEEEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA-QGIIMVYD   94 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~d   94 (210)
                      +|+++|++|||||||+++|..+.+....++.............+....+.+||+||+..+...+...++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999988766555443333322222224457799999999999988888888888 99999999


Q ss_pred             CCCc-ccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCC
Q 028381           95 VTRR-DTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        95 ~~~~-~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~  134 (210)
                      +.+. .++.....+|...+... ....++|+++++||+|+..
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            9997 66777766454444321 1235799999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.87  E-value=6.9e-21  Score=158.21  Aligned_cols=154  Identities=18%  Similarity=0.217  Sum_probs=109.2

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ..+..+|+++|++++|||||+++|.+..+..... ....+.....+..++. ..+.+|||||++.+..++...+..+|++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            3466899999999999999999999877654332 2223333333343322 2789999999999999888889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------CeEEEEccC
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG---------CLFIECSAK  160 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~  160 (210)
                      ++|+|+++...-+.... + ..    ....++|+++++||+|++..   ..+.+.......+         .+++++||+
T Consensus       163 ILVVda~dgv~~qT~e~-i-~~----~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk  233 (587)
T TIGR00487       163 VLVVAADDGVMPQTIEA-I-SH----AKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSAL  233 (587)
T ss_pred             EEEEECCCCCCHhHHHH-H-HH----HHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence            99999987543322222 2 11    12356899999999998643   2233333332222         469999999


Q ss_pred             CCCCHHHHHHHHHH
Q 028381          161 TRVNVQQCFEELVL  174 (210)
Q Consensus       161 ~~~~i~~~~~~l~~  174 (210)
                      +|.|++++|+++..
T Consensus       234 tGeGI~eLl~~I~~  247 (587)
T TIGR00487       234 TGDGIDELLDMILL  247 (587)
T ss_pred             CCCChHHHHHhhhh
Confidence            99999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=2.8e-21  Score=157.19  Aligned_cols=152  Identities=24%  Similarity=0.224  Sum_probs=108.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhcccCcc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------RFRTLTSSYYRGAQ   87 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~~d   87 (210)
                      +|+++|.+|||||||+++|++.........++.+.......+......+.+|||||..        .+.......+..+|
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            5899999999999999999988754444445554433333333334569999999963        33344556788999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ  166 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  166 (210)
                      ++++|+|+.++.+.... . +...+..    .++|+++|+||+|+.......    . .+..+++ +++++||++|.|+.
T Consensus        81 ~vl~vvD~~~~~~~~d~-~-i~~~l~~----~~~piilVvNK~D~~~~~~~~----~-~~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        81 VILFVVDGREGLTPEDE-E-IAKWLRK----SGKPVILVANKIDGKKEDAVA----A-EFYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             EEEEEEeCCCCCCHHHH-H-HHHHHHH----hCCCEEEEEECccCCcccccH----H-HHHhcCCCCeEEEeCCcCCChH
Confidence            99999999886554432 1 3333432    468999999999986543221    1 1345676 69999999999999


Q ss_pred             HHHHHHHHHHHc
Q 028381          167 QCFEELVLKILD  178 (210)
Q Consensus       167 ~~~~~l~~~~~~  178 (210)
                      ++++++.+.+.+
T Consensus       150 ~ll~~i~~~l~~  161 (429)
T TIGR03594       150 DLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHhcCc
Confidence            999999988754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.87  E-value=9.7e-21  Score=138.40  Aligned_cols=159  Identities=20%  Similarity=0.182  Sum_probs=106.7

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE----------RFRTL   78 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~   78 (210)
                      ......+|+++|++|+|||||+++|++..+ ....++.+.+.....+..   ...+.+|||||..          .+...
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            445779999999999999999999998763 344445555544333332   3679999999942          22223


Q ss_pred             hhhccc---CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHHHhCCe
Q 028381           79 TSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT--KKEGINFAREYGCL  153 (210)
Q Consensus        79 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~  153 (210)
                      ...+++   ..+++++|+|.+++.+.....  +...+.    ..+.|+++++||+|+.......  .+.+.........+
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--i~~~l~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~  170 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQ--MIEWLK----EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE  170 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHHH--HHHHHH----HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence            333344   346888999988765543321  222232    2468899999999986443221  22233444444678


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHH
Q 028381          154 FIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       154 ~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ++++||+++.|++++++.|.+.+.
T Consensus       171 ~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        171 VILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhc
Confidence            999999999999999999987763

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=4.9e-21  Score=138.06  Aligned_cols=149  Identities=19%  Similarity=0.204  Sum_probs=100.8

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----------ccc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----------FRT   77 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~   77 (210)
                      .+.....+|+++|++|+|||||++++++..+ ....++.+.+.....+..++   .+.+||+||...          +..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            4457789999999999999999999998763 33444555555444444432   589999999532          222


Q ss_pred             chhhccc---CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHHhC-
Q 028381           78 LTSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAREYG-  151 (210)
Q Consensus        78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~-  151 (210)
                      ....+++   .++++++|+|++++.+.....  +...+.    ..++|+++++||+|+......  ..++++..+...+ 
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~----~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~  163 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLR----ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD  163 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC
Confidence            2233444   458999999998866555442  233333    246899999999998644322  2344455555543 


Q ss_pred             -CeEEEEccCCCCCHH
Q 028381          152 -CLFIECSAKTRVNVQ  166 (210)
Q Consensus       152 -~~~~~~Sa~~~~~i~  166 (210)
                       .+++++||++|+|++
T Consensus       164 ~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       164 DPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCceEEEECCCCCCCC
Confidence             479999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=3.4e-22  Score=132.62  Aligned_cols=163  Identities=22%  Similarity=0.322  Sum_probs=128.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ++..+|+++|--|+||||+..++.-++.....|+++.......+    +..++.+||+.|+-.+++.|+.++.+.|++|+
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            47899999999999999999999988877777888877664443    77889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc---eecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      |+|.+|.+........+...+.+ ..-....++|++||+|.+...   ++.......-.++.-+.++++||.+|+|++..
T Consensus        92 VVDssd~dris~a~~el~~mL~E-~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQE-EELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhcc-HhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence            99999998877666655555543 223457789999999985331   11222222233344467999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028381          169 FEELVLKILDT  179 (210)
Q Consensus       169 ~~~l~~~~~~~  179 (210)
                      ++|+.+-+..+
T Consensus       171 ~DWL~~~l~~~  181 (182)
T KOG0072|consen  171 MDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHhcc
Confidence            99999988543

>PRK11058 GTPase HflX; Provisional

Probab=99.86  E-value=6e-21  Score=153.43  Aligned_cols=157  Identities=20%  Similarity=0.152  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc--ccchhh------cccC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF--RTLTSS------YYRG   85 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~------~~~~   85 (210)
                      .+|+++|.+|||||||+|+|++.+... ..+....+.....+.+.+. ..+.+|||+|....  ...+..      .+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            689999999999999999999876531 2222222222233444332 25789999997321  222222      3578


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccCCCCC
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVN  164 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~  164 (210)
                      +|++++|+|++++.++..+.. |...+... ...++|+++|+||+|+......   ...  ....+.+ ++.+||++|.|
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el-~~~~~pvIiV~NKiDL~~~~~~---~~~--~~~~~~~~~v~ISAktG~G  349 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEA-VNTVLEEI-DAHEIPTLLVMNKIDMLDDFEP---RID--RDEENKPIRVWLSAQTGAG  349 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHH-HHHHHHHh-ccCCCCEEEEEEcccCCCchhH---HHH--HHhcCCCceEEEeCCCCCC
Confidence            999999999999988777654 54545442 2346899999999998543111   111  1123555 58899999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 028381          165 VQQCFEELVLKILDT  179 (210)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (210)
                      ++++++++.+.+...
T Consensus       350 IdeL~e~I~~~l~~~  364 (426)
T PRK11058        350 IPLLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999988544

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=1.2e-20  Score=159.12  Aligned_cols=157  Identities=17%  Similarity=0.193  Sum_probs=113.0

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ..+..+|+|+|++++|||||+++|....+.....   +.....+...+..++....+.||||||++.+..++...+..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            3567899999999999999999999876653221   2222233333444455688999999999999999988899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH-------HHHhC--CeEEEEc
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF-------AREYG--CLFIECS  158 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~S  158 (210)
                      ++|+|+|+++......... |. .+    ...++|+||++||+|++...   .+.+...       ...++  ++++++|
T Consensus       321 iaILVVDA~dGv~~QT~E~-I~-~~----k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VS  391 (742)
T CHL00189        321 IAILIIAADDGVKPQTIEA-IN-YI----QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPIS  391 (742)
T ss_pred             EEEEEEECcCCCChhhHHH-HH-HH----HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEE
Confidence            9999999988543332222 22 12    23568999999999986532   1222221       12233  6899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028381          159 AKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       159 a~~~~~i~~~~~~l~~~~  176 (210)
                      |++|.|++++++++....
T Consensus       392 AktG~GIdeLle~I~~l~  409 (742)
T CHL00189        392 ASQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCCCHHHHHHhhhhhh
Confidence            999999999999988753

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=1.1e-20  Score=153.82  Aligned_cols=163  Identities=23%  Similarity=0.155  Sum_probs=111.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------hh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-----------TS   80 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~   80 (210)
                      ...++|+++|.+|+|||||+++|++.......+..+++.......+......+.+|||||.......           ..
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            4579999999999999999999998765444444555554444333334456789999995432111           12


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH----HhCCeEEE
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR----EYGCLFIE  156 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~  156 (210)
                      ..++.+|++++|+|++++.+.....  +...+.    ..++|+++|+||+|+.+.... .+....+..    ...+++++
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~----~~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDLR--IAGLAL----EAGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEE
Confidence            3577899999999999987766543  333332    346899999999998633211 111111111    12478999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHcCCC
Q 028381          157 CSAKTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      +||+++.|++++++.+.+...+...
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~~~~  348 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYENANR  348 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999887655443

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=6.6e-21  Score=155.22  Aligned_cols=148  Identities=23%  Similarity=0.200  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccc--------cccchhhccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYYR   84 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~   84 (210)
                      .+|+++|.+|||||||+++|.+.........++.+.  .......++  ..+.+|||||...        +.......+.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            589999999999999999999877543333334333  223334444  7789999999876        2223445678


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccCCCC
Q 028381           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRV  163 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  163 (210)
                      .+|++++|+|+.++.+.....  +...+..    .+.|+++|+||+|+....    +...++ ...++. ++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~--~~~~l~~----~~~piilv~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEE--IAKILRK----SNKPVILVVNKVDGPDEE----ADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCcEEEEEECccCccch----hhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999999865443221  2222332    368999999999975321    222222 345654 8999999999


Q ss_pred             CHHHHHHHHHHH
Q 028381          164 NVQQCFEELVLK  175 (210)
Q Consensus       164 ~i~~~~~~l~~~  175 (210)
                      |++++++++...
T Consensus       149 gv~~l~~~I~~~  160 (435)
T PRK00093        149 GIGDLLDAILEE  160 (435)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999883

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.86  E-value=1.4e-20  Score=157.21  Aligned_cols=160  Identities=20%  Similarity=0.245  Sum_probs=115.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC--CC---------CCC---CCceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FE---------ELS---PTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQ   72 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~--~~---------~~~---~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~   72 (210)
                      +..-+|+++|+.++|||||+.+|+...  +.         +..   ...+.++....+.+     ++..+.+++|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            345689999999999999999997532  11         000   12344443322222     556789999999999


Q ss_pred             cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC
Q 028381           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC  152 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  152 (210)
                      ..+...+...++.+|++|+|+|+++......... |....     ..++|+++|+||+|+.....  .....++....++
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~-----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~  156 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGI  156 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH-----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCC
Confidence            9999888899999999999999999876665544 43332     24679999999999864321  1122334444555


Q ss_pred             e---EEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          153 L---FIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       153 ~---~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      +   ++++||++|.|+++++++|.+.+...
T Consensus       157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        157 DASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             CcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            4   89999999999999999999887543

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.86  E-value=1.2e-20  Score=157.34  Aligned_cols=157  Identities=19%  Similarity=0.211  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC---CCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN---FEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      +.|+++|++++|||||+++|++..   +++.+ .....+.....+..++  ..+.+||+||++.+...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            478999999999999999999643   22222 1333333333344444  78999999999998888888889999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee--cHHHHHHHHHHh----CCeEEEEccCCCC
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV--TKKEGINFAREY----GCLFIECSAKTRV  163 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~~  163 (210)
                      +|+|+++...-+.. + .+..+.    ..++| ++||+||+|+.+...+  ..+++..+....    +++++++||++|.
T Consensus        79 LVVDa~~G~~~qT~-e-hl~il~----~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~  152 (581)
T TIGR00475        79 LVVDADEGVMTQTG-E-HLAVLD----LLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ  152 (581)
T ss_pred             EEEECCCCCcHHHH-H-HHHHHH----HcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence            99999984322221 1 222222    23567 9999999999754432  233455555544    4789999999999


Q ss_pred             CHHHHHHHHHHHHHcC
Q 028381          164 NVQQCFEELVLKILDT  179 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (210)
                      |+++++.++...+...
T Consensus       153 GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       153 GIGELKKELKNLLESL  168 (581)
T ss_pred             CchhHHHHHHHHHHhC
Confidence            9999999988776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd00880 Era_like Era (E

Probab=99.86  E-value=9.4e-21  Score=133.33  Aligned_cols=151  Identities=22%  Similarity=0.153  Sum_probs=103.3

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCcccccc-------chhhcccCccEEE
Q 028381           19 MIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFRT-------LTSSYYRGAQGII   90 (210)
Q Consensus        19 i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-------~~~~~~~~~d~~i   90 (210)
                      ++|++|+|||||++++.+..........+.+........... ...+.+||+||......       .....++.+|+++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            589999999999999998765433332222222222222111 56799999999765543       3334678999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH---HHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK---EGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      +|+|+++........  +....    ...+.|+++|+||.|+.........   .........+.+++++|++++.|+++
T Consensus        81 ~v~~~~~~~~~~~~~--~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880          81 FVVDADLRADEEEEK--LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             EEEeCCCCCCHHHHH--HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence            999999988766553  22222    2457899999999998654333221   12233334467899999999999999


Q ss_pred             HHHHHHHH
Q 028381          168 CFEELVLK  175 (210)
Q Consensus       168 ~~~~l~~~  175 (210)
                      +++++.+.
T Consensus       155 l~~~l~~~  162 (163)
T cd00880         155 LREALIEA  162 (163)
T ss_pred             HHHHHHhh
Confidence            99999865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=2.8e-20  Score=158.97  Aligned_cols=158  Identities=18%  Similarity=0.128  Sum_probs=111.2

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhh
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSS   81 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~   81 (210)
                      ......+|+++|.++||||||+++|++.....+...++.+..............+.+|||||...        +......
T Consensus       271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~  350 (712)
T PRK09518        271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI  350 (712)
T ss_pred             ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence            33456789999999999999999999887655555666666555444433446789999999653        2233345


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccC
Q 028381           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAK  160 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~  160 (210)
                      .+..+|++++|+|+++.....  ...|...+.    ..++|+++|+||+|+....    .....+ ...+. .++++||+
T Consensus       351 ~~~~aD~iL~VvDa~~~~~~~--d~~i~~~Lr----~~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSA~  419 (712)
T PRK09518        351 AVSLADAVVFVVDGQVGLTST--DERIVRMLR----RAGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEPYPISAM  419 (712)
T ss_pred             HHHhCCEEEEEEECCCCCCHH--HHHHHHHHH----hcCCCEEEEEECcccccch----hhHHHH-HHcCCCCeEEEECC
Confidence            678999999999998753322  222444444    3578999999999985431    111222 12333 36799999


Q ss_pred             CCCCHHHHHHHHHHHHHc
Q 028381          161 TRVNVQQCFEELVLKILD  178 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~  178 (210)
                      +|.|++++++++++.+.+
T Consensus       420 ~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        420 HGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCCchHHHHHHHHhccc
Confidence            999999999999998854

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.85  E-value=3.5e-20  Score=157.52  Aligned_cols=154  Identities=19%  Similarity=0.237  Sum_probs=108.8

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ..+...|+|+|+.++|||||+++|....+.... .....+.....+..+  ...++||||||+..|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            467789999999999999999999877664322 122222222333333  36799999999999999888888999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-------HHHHhC--CeEEEEccC
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-------FAREYG--CLFIECSAK  160 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~  160 (210)
                      |+|+|+++...-..... |. .    ....++|+||++||+|++...   .+.+..       +...++  ++++++||+
T Consensus       365 ILVVdAddGv~~qT~e~-i~-~----a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk  435 (787)
T PRK05306        365 VLVVAADDGVMPQTIEA-IN-H----AKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAK  435 (787)
T ss_pred             EEEEECCCCCCHhHHHH-HH-H----HHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence            99999998543222222 21 1    224568999999999996432   111111       122233  679999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028381          161 TRVNVQQCFEELVLK  175 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~  175 (210)
                      +|.|++++|++|...
T Consensus       436 tG~GI~eLle~I~~~  450 (787)
T PRK05306        436 TGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCchHHHHhhhhh
Confidence            999999999998753

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=5.3e-21  Score=132.75  Aligned_cols=168  Identities=32%  Similarity=0.560  Sum_probs=142.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      .-.++++++|+.|.||||++++++.+.|...++ +.+.......+.-+...+++..|||.|++.+..+...++-...+.+
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            567999999999999999999999999988776 9998888777766666799999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      ++||+....++.++.. |...+.+.  ..++|+|++|||.|.....  .......+....++.++++||+.+.|.+..|-
T Consensus        88 imFdVtsr~t~~n~~r-whrd~~rv--~~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl  162 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPR-WHRDLVRV--RENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFL  162 (216)
T ss_pred             EEeeeeehhhhhcchH-HHHHHHHH--hcCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchH
Confidence            9999999999999988 55555443  4569999999999985443  22233455566788899999999999999999


Q ss_pred             HHHHHHHcCCCccc
Q 028381          171 ELVLKILDTPSLLA  184 (210)
Q Consensus       171 ~l~~~~~~~~~~~~  184 (210)
                      |+.+++...+.+.-
T Consensus       163 ~LarKl~G~p~Lef  176 (216)
T KOG0096|consen  163 WLARKLTGDPSLEF  176 (216)
T ss_pred             HHhhhhcCCCCeEE
Confidence            99999998887753

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.85  E-value=9.8e-21  Score=137.52  Aligned_cols=158  Identities=21%  Similarity=0.200  Sum_probs=107.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------------CCceeeeEEEEEEEC--CeEEEEEEEeCCCcc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----------------PTIGVDFKVKYVDVG--GKKLKLAIWDTAGQE   73 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~   73 (210)
                      ..++|+++|+.++|||||+.+|.........                 ...+.+.......+.  .....++++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4689999999999999999999844321100                 011222222222332  556789999999999


Q ss_pred             ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHH-HHHHHh-
Q 028381           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGI-NFAREY-  150 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~-~~~~~~-  150 (210)
                      .+.......+..+|++|+|+|+.+........  .+..+.    ..++|++||+||+|+...+.. ..++.. .+.+.. 
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~--~l~~~~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEE--HLKILR----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH--HHHHHH----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ceeecccceecccccceeeeeccccccccccc--cccccc----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence            88887778899999999999999875543332  223332    356789999999999722111 111122 232222 


Q ss_pred             -----CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          151 -----GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       151 -----~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                           .++++++||.+|.|++++++.+.+.+
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence                 35799999999999999999998875

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=6.2e-20  Score=156.64  Aligned_cols=153  Identities=14%  Similarity=0.158  Sum_probs=116.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------hhhc-
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL----------TSSY-   82 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~-   82 (210)
                      .++|+++|+||||||||+|+|++... .....++.|+......+......+.+||+||...+...          ...+ 
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l   81 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence            47899999999999999999997764 34456777777777667777788999999998665431          1122 


Q ss_pred             -ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028381           83 -YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        83 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (210)
                       ...+|++++|+|+++.+....    |...+.    ..++|+++++||+|+.+.+.+. .+.+.+.+..+++++++|+++
T Consensus        82 ~~~~aD~vI~VvDat~ler~l~----l~~ql~----e~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~  152 (772)
T PRK09554         82 LSGDADLLINVVDASNLERNLY----LTLQLL----ELGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTR  152 (772)
T ss_pred             hccCCCEEEEEecCCcchhhHH----HHHHHH----HcCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeec
Confidence             247899999999998654322    223333    2468999999999986554443 446777888999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028381          162 RVNVQQCFEELVLKI  176 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (210)
                      +.|++++++.+.+..
T Consensus       153 g~GIdeL~~~I~~~~  167 (772)
T PRK09554        153 GRGIEALKLAIDRHQ  167 (772)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999988765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=2.2e-20  Score=159.63  Aligned_cols=161  Identities=20%  Similarity=0.181  Sum_probs=109.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceee--eEEEEEEECCeEEEEEEEeCCCccc----------cccc-h
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVD--FKVKYVDVGGKKLKLAIWDTAGQER----------FRTL-T   79 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~-~   79 (210)
                      ..++|+++|.+|||||||+++|++..........+++  .....+.+++.  .+.+|||||...          +... .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999988753333323333  33333445554  466999999532          1111 1


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-HH----hCCeE
Q 028381           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-RE----YGCLF  154 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~----~~~~~  154 (210)
                      ...++.+|++++|+|+++..+...... + ..+.    ..++|+++|+||+|+.+...  .+...... ..    ...++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~-~~~~----~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~i  598 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-M-SMAV----DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARR  598 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-H-HHHH----HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCE
Confidence            234688999999999999988776643 3 2232    24689999999999964322  11111111 11    13467


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028381          155 IECSAKTRVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       155 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      +++||++|.|++++|+.+.+.+.+....+
T Consensus       599 i~iSAktg~gv~~L~~~i~~~~~~~~~~i  627 (712)
T PRK09518        599 VNLSAKTGWHTNRLAPAMQEALESWDQRI  627 (712)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhcccC
Confidence            99999999999999999999887655443

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=4.3e-21  Score=131.40  Aligned_cols=164  Identities=27%  Similarity=0.376  Sum_probs=123.0

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCC---C-----CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN---F-----EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      ......+.|+|+|..++|||||+..+....   +     ..-.++.+.......+    ....+.+||.+|++..+++|.
T Consensus        12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~   87 (197)
T KOG0076|consen   12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWK   87 (197)
T ss_pred             HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHH
Confidence            344566889999999999999998775221   1     1111244433333322    356799999999999999999


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH------HhCCeE
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR------EYGCLF  154 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~  154 (210)
                      .+|..++++|+++|+++++.|+.....+...+.. -.-.++|+++.+||.|+.+.  ...+++...+.      +...++
T Consensus        88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~-E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~  164 (197)
T KOG0076|consen   88 KYYWLAHGIIYVIDATDRERFEESKTAFEKVVEN-EKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPF  164 (197)
T ss_pred             HHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHH-HHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCcc
Confidence            9999999999999999999999887755554443 34568999999999998644  33333333332      224569


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          155 IECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       155 ~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      .++||.+|+||++...|+...+.++
T Consensus       165 ~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  165 QPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccchhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999999999777

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.84  E-value=4.7e-20  Score=153.96  Aligned_cols=144  Identities=19%  Similarity=0.231  Sum_probs=103.4

Q ss_pred             cCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE--EEEECCeEEEEEEEeCCCccccccc------hhhcc--cCccEEE
Q 028381           21 GDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVK--YVDVGGKKLKLAIWDTAGQERFRTL------TSSYY--RGAQGII   90 (210)
Q Consensus        21 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i   90 (210)
                      |++|||||||+|++++... ...+.++.+....  .+..++  ..+++|||||...+...      ...++  ..+|+++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI   77 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV   77 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence            8999999999999998765 2333444444433  344444  45799999998776543      23332  4789999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|+|+++.+..   .. +...+.    ..++|+++|+||+|+.+...+. .+.+.+.+..+++++++||++|.|++++++
T Consensus        78 ~VvDat~ler~---l~-l~~ql~----~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~  148 (591)
T TIGR00437        78 NVVDASNLERN---LY-LTLQLL----ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKD  148 (591)
T ss_pred             EEecCCcchhh---HH-HHHHHH----hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence            99999875432   12 222222    2468999999999986544443 346777888899999999999999999999


Q ss_pred             HHHHHH
Q 028381          171 ELVLKI  176 (210)
Q Consensus       171 ~l~~~~  176 (210)
                      ++.+..
T Consensus       149 ~i~~~~  154 (591)
T TIGR00437       149 AIRKAI  154 (591)
T ss_pred             HHHHHh
Confidence            998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=2.6e-20  Score=146.40  Aligned_cols=152  Identities=21%  Similarity=0.142  Sum_probs=115.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc---------cchhhcccC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR---------TLTSSYYRG   85 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~   85 (210)
                      ..|+++|.||||||||+|||++...+.+..++|.|..............+.++||+|.+...         ......+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            56999999999999999999999998888888888877766666666779999999965322         234456789


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCC
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVN  164 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  164 (210)
                      +|+++||+|....-+-.+-.  ....+.    ..++|+++|+||+|-..     .+.....+-.+|+ .++.+||.+|.|
T Consensus        84 ADvilfvVD~~~Git~~D~~--ia~~Lr----~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~G  152 (444)
T COG1160          84 ADVILFVVDGREGITPADEE--IAKILR----RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRG  152 (444)
T ss_pred             CCEEEEEEeCCCCCCHHHHH--HHHHHH----hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccC
Confidence            99999999998865433221  222232    34689999999999742     2222333445665 499999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028381          165 VQQCFEELVLKIL  177 (210)
Q Consensus       165 i~~~~~~l~~~~~  177 (210)
                      +.++++.++..+.
T Consensus       153 i~dLld~v~~~l~  165 (444)
T COG1160         153 IGDLLDAVLELLP  165 (444)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999999984

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.84  E-value=6.9e-20  Score=148.58  Aligned_cols=155  Identities=18%  Similarity=0.092  Sum_probs=104.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCC------------------------------CCCCCceeeeEEEEEEECCeE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------------------------ELSPTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~   61 (210)
                      ...++|+++|++++|||||+++|+...-.                              ......+.+.......+....
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            45699999999999999999999843211                              001145556666666666677


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce----
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV----  137 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----  137 (210)
                      +.+.+|||||++.+.......+..+|++++|+|+++...+......+......   ....|+++++||+|+.....    
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~---~~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART---LGINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH---cCCCeEEEEEEccccccccHHHHH
Confidence            89999999999887665556678899999999998732221111112222222   11246899999999964221    


Q ss_pred             ecHHHHHHHHHHhC-----CeEEEEccCCCCCHHHHH
Q 028381          138 VTKKEGINFAREYG-----CLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       138 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  169 (210)
                      ...+++..++...+     ++++++||++|.|+++..
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            12234555555554     469999999999998754

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.83  E-value=3.7e-22  Score=138.09  Aligned_cols=189  Identities=35%  Similarity=0.538  Sum_probs=149.8

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      .+..++++|+|+-|+|||++++++....|+..+. +++..+.......+. ..+++.|||..|++.+..+..-+++.+.+
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            4678999999999999999999999888877666 888777655444433 34789999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhh---hccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHhCCe-EEEEccCCCC
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDL---YSTNQDCIKLLVGNKVDKESERVV-TKKEGINFAREYGCL-FIECSAKTRV  163 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~-~~~~Sa~~~~  163 (210)
                      ..+|||.++..+|+.... |...+..   .++..++|+|+.+||+|+...... ......++.+++|+. .+++|+|.+.
T Consensus       102 ~~iVfdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             eEEEEEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            999999999999999988 8877753   244567899999999998544333 246677888888886 9999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCccccc-ccCcccccccCCCC
Q 028381          164 NVQQCFEELVLKILDTPSLLAEG-SKGLKKNIFKQKPP  200 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  200 (210)
                      +++|+-..+++.++.+.....+. ......+-.....+
T Consensus       181 ni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~~~~~  218 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVNDEQPIKSSAVDGDKINLRLMQP  218 (229)
T ss_pred             ChhHHHHHHHHHHHhhccCCcccccccccccCccccCc
Confidence            99999999999998887444433 33344433333333

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.83  E-value=1.5e-19  Score=146.64  Aligned_cols=156  Identities=21%  Similarity=0.117  Sum_probs=105.5

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcC--CCCC----------------------------CCCCceeeeEEEEEEECCe
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD--NFEE----------------------------LSPTIGVDFKVKYVDVGGK   60 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~   60 (210)
                      ....++|+++|+.++|||||+.+|+..  ....                            .....+.+.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            345699999999999999999999852  1110                            0012344444445556666


Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHH-HHHHHhhhccCCCCcEEEEEeCCCCCCCce--
Q 028381           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDV-WAKEIDLYSTNQDCIKLLVGNKVDKESERV--  137 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--  137 (210)
                      .+.+.+||+||++.+.......+..+|++++|+|+++.+++...... +......   ....|++|++||+|+.+...  
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~---~~~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART---LGINQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH---cCCCeEEEEEEChhccCccHHH
Confidence            78899999999988776666667899999999999988543211110 1112221   12357899999999964221  


Q ss_pred             --ecHHHHHHHHHHhC-----CeEEEEccCCCCCHHHHH
Q 028381          138 --VTKKEGINFAREYG-----CLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       138 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  169 (210)
                        ...+++..++...+     ++++++||+++.|+.+.+
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence              12345566666555     579999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.83  E-value=1.7e-19  Score=141.80  Aligned_cols=165  Identities=22%  Similarity=0.126  Sum_probs=123.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc---------ccc--chhh
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER---------FRT--LTSS   81 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~--~~~~   81 (210)
                      ..+||+|+|.|++|||||+|++++.+-...++..|+|.......+......+.++||+|...         ..+  -...
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~  256 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK  256 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence            67999999999999999999999999888888888888888777766666788889999322         111  1233


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCeEEE
Q 028381           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----YGCLFIE  156 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~  156 (210)
                      .+..+|++++|+|++.+.+.+...  ....    ..+.+.++++|+||+|+.+......++.+.....     ..++++.
T Consensus       257 aI~~a~vvllviDa~~~~~~qD~~--ia~~----i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         257 AIERADVVLLVIDATEGISEQDLR--IAGL----IEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HHhhcCEEEEEEECCCCchHHHHH--HHHH----HHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            567899999999999988766553  2223    3357789999999999866533333333222222     2467999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028381          157 CSAKTRVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      +||+++.++..+|+.+.+........+
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~~~ri  357 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECATRRI  357 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhcccc
Confidence            999999999999999988776555443

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.83  E-value=1.9e-19  Score=141.84  Aligned_cols=156  Identities=21%  Similarity=0.166  Sum_probs=122.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhcc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSYY   83 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~   83 (210)
                      ..-+|++++|.||+|||||+|.|++.+-..++..+|+|.......++-..+.+.++||+|..+....        ....+
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            4569999999999999999999999999999999999999888888778889999999996654432        33457


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (210)
                      ..+|.+++|+|++.+.+-.....++       ....+.|+++|.||.|+.........     ....+.+++.+|++++.
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~~~~~-------~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~  362 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDLALIE-------LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGE  362 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhHHHHH-------hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCcc
Confidence            8899999999999974433333212       23567899999999999755442211     11224468999999999


Q ss_pred             CHHHHHHHHHHHHHcC
Q 028381          164 NVQQCFEELVLKILDT  179 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (210)
                      |++.+.+.|.+.+...
T Consensus       363 Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         363 GLDALREAIKQLFGKG  378 (454)
T ss_pred             CHHHHHHHHHHHHhhc
Confidence            9999999999888666

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.83  E-value=2.2e-19  Score=122.01  Aligned_cols=135  Identities=19%  Similarity=0.248  Sum_probs=98.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc----cccccchhhcccCccEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----ERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~d~~i~   91 (210)
                      ||+++|+.|||||||+++|.+... .+..|....+.            =.++||||.    ..+..-.......+|.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            899999999999999999998665 33334443332            123699993    2333333344568999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccCCCCCHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE  170 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~  170 (210)
                      |.|++++.+...-      .+.   ..-+.|+|-|+||+|++. ...+.+.++++....|+. +|++|+.+++|++++.+
T Consensus        70 l~dat~~~~~~pP------~fa---~~f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   70 LQDATEPRSVFPP------GFA---SMFNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             EecCCCCCccCCc------hhh---cccCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence            9999997654222      111   123579999999999963 344666788888888886 99999999999999998


Q ss_pred             HHH
Q 028381          171 ELV  173 (210)
Q Consensus       171 ~l~  173 (210)
                      +|-
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.82  E-value=1.2e-19  Score=133.81  Aligned_cols=148  Identities=22%  Similarity=0.179  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------------------CCceeeeEEEEEEECCeEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELS------------------------------PTIGVDFKVKYVDVGGKKLKLA   65 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~   65 (210)
                      ||+++|++++|||||+++|+...-....                              ...+.+.......+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            6899999999999999999754321110                              0133344433344444566889


Q ss_pred             EEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee----cHH
Q 028381           66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV----TKK  141 (210)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~  141 (210)
                      +|||||+..+...+...++.+|++++|+|++++..-... . ....+..   ....++|+|+||+|+......    ...
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~-~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-R-HSYILSL---LGIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-H-HHHHHHH---cCCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            999999988766666678899999999999876432222 1 1222222   112457889999998643221    123


Q ss_pred             HHHHHHHHhCC---eEEEEccCCCCCHHHH
Q 028381          142 EGINFAREYGC---LFIECSAKTRVNVQQC  168 (210)
Q Consensus       142 ~~~~~~~~~~~---~~~~~Sa~~~~~i~~~  168 (210)
                      +...+....+.   +++++||+++.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            34455555553   4899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.82  E-value=2.9e-19  Score=143.84  Aligned_cols=162  Identities=17%  Similarity=0.135  Sum_probs=105.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEE--------------------EEEECC------eEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVK--------------------YVDVGG------KKLK   63 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~--------------------~~~~~~------~~~~   63 (210)
                      ...++|+++|++++|||||+++|.+........  ..+.+...-                    ....++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            457899999999999999999997542211101  111111100                    000011      1467


Q ss_pred             EEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHH
Q 028381           64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKK  141 (210)
Q Consensus        64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~  141 (210)
                      +++||+||++.+...+...+..+|++++|+|++++........ .+..+..   ....|+++++||+|+......  ..+
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~---~gi~~iIVvvNK~Dl~~~~~~~~~~~  157 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEI---IGIKNIVIVQNKIDLVSKEKALENYE  157 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHH---cCCCeEEEEEEccccCCHHHHHHHHH
Confidence            8999999999988888788888999999999997531122222 2222222   112468999999999654321  223


Q ss_pred             HHHHHHHHh---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          142 EGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       142 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ++..+....   +++++++||+++.|+++++++|...+.
T Consensus       158 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       158 EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            344444432   578999999999999999999988664

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.82  E-value=7.7e-19  Score=131.31  Aligned_cols=151  Identities=24%  Similarity=0.173  Sum_probs=98.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccCcc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRGAQ   87 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d   87 (210)
                      +|+++|++|+|||||+++|++.... ..++....+...-.+.+  ....+++||+||.....       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY--KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE--CCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            7899999999999999999977532 22221111122222223  34678999999964332       12345688999


Q ss_pred             EEEEEEECCCccc-HHHHHHHHHHH-----------------------------------------Hhhh----------
Q 028381           88 GIIMVYDVTRRDT-FTNLSDVWAKE-----------------------------------------IDLY----------  115 (210)
Q Consensus        88 ~~i~v~d~~~~~s-~~~~~~~~~~~-----------------------------------------~~~~----------  115 (210)
                      ++++|+|++++.. ...+.. .+..                                         +..+          
T Consensus        80 ~il~V~D~t~~~~~~~~~~~-~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          80 LILMVLDATKPEGHREILER-ELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             EEEEEecCCcchhHHHHHHH-HHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            9999999987652 222222 1110                                         1110          


Q ss_pred             -------------ccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          116 -------------STNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       116 -------------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                                   .+...+|+++|+||+|+..     .++...++.  ..+++++||+++.|++++|+.+.+.+
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                         1123469999999999853     333344433  24589999999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK10218 GTP-binding protein; Provisional

Probab=99.81  E-value=1.4e-18  Score=144.70  Aligned_cols=161  Identities=16%  Similarity=0.169  Sum_probs=116.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc--CCCCCC-------------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS--DNFEEL-------------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      ...+|+++|+.++|||||+++|+.  +.+...             ..+.+.++......+.+..+.+++|||||+..+..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            456899999999999999999986  333221             12456666666667777789999999999999999


Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHH-------
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFARE-------  149 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~-------  149 (210)
                      .+..+++.+|++++|+|+.+......... |.. ..    ..++|.++++||+|++..+. ...+++..++..       
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~-l~~-a~----~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~  157 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTRFV-TKK-AF----AYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ  157 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHHHH-HHH-HH----HcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence            99999999999999999988643332221 322 22    24688999999999865432 122333343322       


Q ss_pred             hCCeEEEEccCCCC----------CHHHHHHHHHHHHHcC
Q 028381          150 YGCLFIECSAKTRV----------NVQQCFEELVLKILDT  179 (210)
Q Consensus       150 ~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~  179 (210)
                      ..+|++.+||++|.          ++..+++.+++.+...
T Consensus       158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            34779999999998          5888888888877433

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=2.7e-18  Score=119.31  Aligned_cols=159  Identities=22%  Similarity=0.249  Sum_probs=118.7

Q ss_pred             cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-----CC--------CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028381            7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----SP--------TIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus         7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      +........||+|.|+.++||||+++.+........     ..        |...++....   .+.+..+++++||||+
T Consensus         3 ~~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~---~~~~~~v~LfgtPGq~   79 (187)
T COG2229           3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE---LDEDTGVHLFGTPGQE   79 (187)
T ss_pred             cccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE---EcCcceEEEecCCCcH
Confidence            344566789999999999999999999986653111     00        1111221111   1133678999999999


Q ss_pred             ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh--C
Q 028381           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY--G  151 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~  151 (210)
                      .+.-+|....+++.++|+++|.+.+..+ .... ...++..   ...+|++|+.||+|+...  ...+.+++.....  .
T Consensus        80 RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~---~~~ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~  152 (187)
T COG2229          80 RFKFMWEILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTS---RNPIPVVVAINKQDLFDA--LPPEKIREALKLELLS  152 (187)
T ss_pred             HHHHHHHHHhCCcceEEEEEecCCCcch-HHHH-HHHHHhh---ccCCCEEEEeeccccCCC--CCHHHHHHHHHhccCC
Confidence            9999999999999999999999999988 3333 4444443   122999999999999755  5556666666655  7


Q ss_pred             CeEEEEccCCCCCHHHHHHHHHHH
Q 028381          152 CLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       152 ~~~~~~Sa~~~~~i~~~~~~l~~~  175 (210)
                      +++++.+|.+++++.+.++.+...
T Consensus       153 ~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         153 VPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             CceeeeecccchhHHHHHHHHHhh
Confidence            899999999999999999888776

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.81  E-value=2.1e-18  Score=125.46  Aligned_cols=147  Identities=15%  Similarity=0.102  Sum_probs=100.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC---------------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNF---------------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL   78 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (210)
                      .++|+++|++++|||||+++|++...               .......+.+.......+......+.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            47899999999999999999985310               011113455555555556666778899999999888777


Q ss_pred             hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHh----
Q 028381           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREY----  150 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~----  150 (210)
                      ....+..+|++++|+|+.....-.. .. +...+.    ..++| +|+++||+|+......   ..+++..+....    
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~-~~~~~~----~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQT-RE-HLLLAR----QVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            7778889999999999987543222 22 222333    23466 7789999998533221   123445554443    


Q ss_pred             -CCeEEEEccCCCCCHH
Q 028381          151 -GCLFIECSAKTRVNVQ  166 (210)
Q Consensus       151 -~~~~~~~Sa~~~~~i~  166 (210)
                       +++++++||++|.|+.
T Consensus       156 ~~v~iipiSa~~g~n~~  172 (195)
T cd01884         156 DNTPIVRGSALKALEGD  172 (195)
T ss_pred             cCCeEEEeeCccccCCC
Confidence             3679999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.81  E-value=8.4e-19  Score=141.10  Aligned_cols=162  Identities=19%  Similarity=0.185  Sum_probs=103.5

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEE----EEE----------------EC--C----eEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVK----YVD----------------VG--G----KKL   62 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~----~~~----------------~~--~----~~~   62 (210)
                      ....++|+++|+.++|||||+.+|.+........  ..+.+....    .+.                .+  +    ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            4456999999999999999999996532111110  122222110    000                00  0    136


Q ss_pred             EEEEEeCCCccccccchhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--c
Q 028381           63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--T  139 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~  139 (210)
                      .+++||+||++.+..........+|++++|+|++++. ....... + ..+..   ....|+++|+||+|+.+....  .
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l-~~l~~---~~i~~iiVVlNK~Dl~~~~~~~~~  160 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-L-MALDI---IGIKNIVIVQNKIDLVSKERALEN  160 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-H-HHHHH---cCCCcEEEEEEeeccccchhHHHH
Confidence            7899999999887766666667789999999999754 2222211 2 22221   112468999999999654322  1


Q ss_pred             HHHHHHHHHHh---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          140 KKEGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       140 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      .+++..++...   +.+++++||+++.|+++++++|...+.
T Consensus       161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            23344444332   578999999999999999999988764

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.81  E-value=6.7e-19  Score=146.22  Aligned_cols=156  Identities=18%  Similarity=0.121  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEEE------------ECCeEEEEEEEeCCCcccccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYVD------------VGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      --|+++|++++|||||+++|.+..+....+     +.+..+......            +......+.+|||||++.+..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            458999999999999999999876643322     112211111000            000112388999999999999


Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee------------cHHHH--
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV------------TKKEG--  143 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~------------~~~~~--  143 (210)
                      ++...++.+|++++|+|+++.........  ...+.    ..++|+++++||+|+......            ..+.+  
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~--i~~l~----~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~  158 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEA--LNILR----MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ  158 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHH--HHHHH----HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence            88888999999999999998433222211  11222    246899999999998532100            00000  


Q ss_pred             ----------HHHHH------------Hh--CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          144 ----------INFAR------------EY--GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       144 ----------~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                                .++..            .+  .++++++||++|+|+++++.++....
T Consensus       159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                      01110            11  35799999999999999999887543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.80  E-value=9.1e-19  Score=145.97  Aligned_cols=158  Identities=17%  Similarity=0.224  Sum_probs=113.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc--CCCCCCC-------------CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS--DNFEELS-------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      +|+|+|+.++|||||+++|+.  +.+....             ...+.++......+.+..+.+++|||||+..+...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            799999999999999999985  2222211             1334555555555566678999999999999988888


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHH-------HhCC
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGINFAR-------EYGC  152 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~  152 (210)
                      ..++.+|++++|+|+.+.. ...... |+..+.    ..++|+++|+||+|+...+.. ..+++..++.       ...+
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~-~l~~a~----~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRF-VLKKAL----ELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHH-HHHHHH----HCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            8999999999999998753 333333 433333    246899999999998654321 1233344432       2356


Q ss_pred             eEEEEccCCCC----------CHHHHHHHHHHHHHcC
Q 028381          153 LFIECSAKTRV----------NVQQCFEELVLKILDT  179 (210)
Q Consensus       153 ~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~  179 (210)
                      +++++||++|.          |+..+|+.+++.+...
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            89999999995          7999999999887544

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.80  E-value=1.6e-18  Score=129.28  Aligned_cols=179  Identities=17%  Similarity=0.163  Sum_probs=124.7

Q ss_pred             cccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------
Q 028381            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF---------   75 (210)
Q Consensus         5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------   75 (210)
                      +..+++..+.++|+++|.||+|||||.|.+.+.+....+.-..+|.......+.....++.|+||||.-.-         
T Consensus        63 srde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~  142 (379)
T KOG1423|consen   63 SRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLM  142 (379)
T ss_pred             CCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHH
Confidence            34456678899999999999999999999999998888876666666666666667788999999992111         


Q ss_pred             cc---chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHH----------
Q 028381           76 RT---LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKE----------  142 (210)
Q Consensus        76 ~~---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~----------  142 (210)
                      ..   .....+..+|++++|+|+++....-.-.  .+..+..+   ..+|-++|+||.|......+....          
T Consensus       143 ~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~  217 (379)
T KOG1423|consen  143 MSVLQNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELA  217 (379)
T ss_pred             HHhhhCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccc
Confidence            11   1223466899999999999643222111  23333332   457899999999975432211110          


Q ss_pred             --HHHHHHHh-------------CC----eEEEEccCCCCCHHHHHHHHHHHHHcCCCccccccc
Q 028381          143 --GINFAREY-------------GC----LFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSK  188 (210)
Q Consensus       143 --~~~~~~~~-------------~~----~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~  188 (210)
                        ..++..+.             |.    .+|.+||++|+||+++-++|+......+..+.++.-
T Consensus       218 ~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~  282 (379)
T KOG1423|consen  218 KLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIV  282 (379)
T ss_pred             hhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccc
Confidence              11111111             12    289999999999999999999999998888876643

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.79  E-value=1.3e-18  Score=130.36  Aligned_cols=112  Identities=14%  Similarity=0.144  Sum_probs=81.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC--------------CCC---CCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFE--------------ELS---PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL   78 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (210)
                      +|+++|++|+|||||+++|+...-.              +..   ...+.++......+.....++++|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999753211              101   12233333344445556788999999999998888


Q ss_pred             hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      +...++.+|++++|+|+++..... ... +...+.    ..++|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~-~~~~~~----~~~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ-TRI-LWRLLR----KLNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH-HHH-HHHHHH----HcCCCEEEEEECcccc
Confidence            888899999999999999875432 233 333333    2468999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.79  E-value=3.4e-18  Score=121.57  Aligned_cols=151  Identities=21%  Similarity=0.199  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc----------ccchhhccc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF----------RTLTSSYYR   84 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~~~~   84 (210)
                      .|+++|++|+|||||++.+.++.+ ....++.+.+.....+..++   .+.+||+||....          ......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            379999999999999999995544 33334555555444444433   7899999995332          222223333


Q ss_pred             ---CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHH--HhCCeEEEE
Q 028381           85 ---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAR--EYGCLFIEC  157 (210)
Q Consensus        85 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~  157 (210)
                         ..+++++++|..+..+.....  ....+..    .+.|+++++||+|+......  ..........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~--~~~~l~~----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLE--MLDWLEE----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHH--HHHHHHH----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               467899999988764322211  2222322    24799999999998533221  1122222222  234579999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 028381          158 SAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~  175 (210)
                      |++++.++++++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999999865

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.78  E-value=1.1e-18  Score=129.60  Aligned_cols=147  Identities=20%  Similarity=0.146  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC---------------------------CCCCC---CCceeeeEEEEEEECCeEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN---------------------------FEELS---PTIGVDFKVKYVDVGGKKLKLA   65 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~---------------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~   65 (210)
                      +|+++|++++|||||+.+|+...                           +....   ...+.+.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            58999999999999999996321                           00111   1334445555555555678899


Q ss_pred             EEeCCCccccccchhhcccCccEEEEEEECCCccc------HHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc--e
Q 028381           66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT------FTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER--V  137 (210)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~  137 (210)
                      +||+||+..+...+...+..+|++++|+|+++...      .......+. ....   ....|+++++||+|+....  .
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART---LGVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH---cCCCeEEEEEEccccccccccH
Confidence            99999998777666667788999999999998521      111222121 2221   1236889999999996321  1


Q ss_pred             e----cHHHHHHHHHHhC-----CeEEEEccCCCCCHH
Q 028381          138 V----TKKEGINFAREYG-----CLFIECSAKTRVNVQ  166 (210)
Q Consensus       138 ~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  166 (210)
                      .    ..+++..+....+     ++++++||++|.|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1    1122223333433     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.78  E-value=5.6e-18  Score=141.23  Aligned_cols=156  Identities=21%  Similarity=0.183  Sum_probs=100.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEEE--ECCeE-----E-----EEEEEeCCCccc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYVD--VGGKK-----L-----KLAIWDTAGQER   74 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~-----~-----~~~l~D~~g~~~   74 (210)
                      .+...|+++|++++|||||+++|.+.......+     +.+.++......  ..+..     .     .+++|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            345579999999999999999998665432222     112111111000  00111     1     268999999999


Q ss_pred             cccchhhcccCccEEEEEEECCC---cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee------------c
Q 028381           75 FRTLTSSYYRGAQGIIMVYDVTR---RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV------------T  139 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~------------~  139 (210)
                      +..++...++.+|++++|+|+++   +.++..+.     .+.    ..++|+++++||+|+......            .
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~  154 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILK----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ  154 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHH----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence            99888888889999999999998   44444332     122    246899999999998522110            0


Q ss_pred             HH-----------HHHHHHHHh---------------CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          140 KK-----------EGINFAREY---------------GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       140 ~~-----------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      ..           ++.......               .++++++||++|.|+++++..+...+
T Consensus       155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence            00           011111111               35699999999999999998876533

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.78  E-value=6.4e-18  Score=141.55  Aligned_cols=155  Identities=18%  Similarity=0.192  Sum_probs=102.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC---CCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN---FEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      -|+++|++++|||||+++|++..   +.+.. ..+.+.......+ ......+.+||+||++.+.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~-~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEK-KRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcc-cCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            48899999999999999999643   22221 1233332221112 1122358999999999887777777889999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee--cHHHHHHHHHHhC---CeEEEEccCCCCCH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV--TKKEGINFAREYG---CLFIECSAKTRVNV  165 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i  165 (210)
                      |+|+++...-.. .+ .+..+..    .++| ++||+||+|+.+....  ..+++..+....+   .+++++||++|.|+
T Consensus        81 VVda~eg~~~qT-~e-hl~il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI  154 (614)
T PRK10512         81 VVACDDGVMAQT-RE-HLAILQL----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGI  154 (614)
T ss_pred             EEECCCCCcHHH-HH-HHHHHHH----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Confidence            999987532221 11 2222222    2345 5799999999654322  2234455554444   67999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028381          166 QQCFEELVLKIL  177 (210)
Q Consensus       166 ~~~~~~l~~~~~  177 (210)
                      +++++.|.+...
T Consensus       155 ~~L~~~L~~~~~  166 (614)
T PRK10512        155 DALREHLLQLPE  166 (614)
T ss_pred             HHHHHHHHHhhc
Confidence            999999987553

>PRK12736 elongation factor Tu; Reviewed

Probab=99.78  E-value=1.1e-17  Score=134.17  Aligned_cols=161  Identities=17%  Similarity=0.099  Sum_probs=108.8

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCC------------C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF------------E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ....++|+++|++++|||||+++|++...            .   ......+.+.......+......+.++|+||++.+
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            34579999999999999999999985311            0   11114455555555566566678899999999888


Q ss_pred             ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCceec---HHHHHHHHHHhC
Q 028381           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVT---KKEGINFAREYG  151 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~  151 (210)
                      .......+..+|++++|+|+.....-.. .. ++..+.    ..++| +|+++||+|+.+.....   .+++..+....+
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~-~~~~~~----~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQT-RE-HILLAR----QVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HH-HHHHHH----HcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            7766666788999999999987533222 22 223333    23577 67889999986433221   234555555444


Q ss_pred             -----CeEEEEccCCCC--------CHHHHHHHHHHHHH
Q 028381          152 -----CLFIECSAKTRV--------NVQQCFEELVLKIL  177 (210)
Q Consensus       152 -----~~~~~~Sa~~~~--------~i~~~~~~l~~~~~  177 (210)
                           ++++++||+++.        ++.++++.+.+.+.
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence                 579999999983        56777777666553

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.78  E-value=1.1e-18  Score=139.93  Aligned_cols=171  Identities=26%  Similarity=0.311  Sum_probs=128.3

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ....+||+++|+.|+||||||.+|...+|.+.-|.....+. ....+.-..+...++|++..+.-......-++++|++.
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~-IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRIL-IPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccc-cCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            45679999999999999999999999998766553222221 12333334566889999876665666677899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHhC-C-eEEEEccCCCCCHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKE-GINFAREYG-C-LFIECSAKTRVNVQ  166 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~i~  166 (210)
                      ++|+.+++.+++.+..+|+..++.... ..++|+|+||||.|....+....+. ..-+...+. + ..++|||++..++.
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~  164 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS  164 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence            999999999999999999999987432 2579999999999986554442222 222222222 2 37999999999999


Q ss_pred             HHHHHHHHHHHcCCCc
Q 028381          167 QCFEELVLKILDTPSL  182 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~~  182 (210)
                      ++|...-.+++-....
T Consensus       165 e~fYyaqKaVihPt~P  180 (625)
T KOG1707|consen  165 ELFYYAQKAVIHPTSP  180 (625)
T ss_pred             hhhhhhhheeeccCcc
Confidence            9999988887665544

>cd04167 Snu114p Snu114p subfamily

Probab=99.77  E-value=4.7e-18  Score=125.80  Aligned_cols=112  Identities=23%  Similarity=0.281  Sum_probs=79.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------CCceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELS------------------PTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQ   72 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~   72 (210)
                      +|+++|++++|||||+.+|+........                  ...+.++......+     ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999865433210                  01122222222221     355789999999999


Q ss_pred             cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      ..+.......+..+|++++|+|+.+..+.... . +.....    ..+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~-~-~~~~~~----~~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE-R-LIRHAI----LEGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECcccC
Confidence            98888788888999999999999987765432 2 333332    2348999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.76  E-value=3.9e-17  Score=131.12  Aligned_cols=160  Identities=14%  Similarity=0.103  Sum_probs=106.7

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcC-------CC-----C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD-------NF-----E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~-------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ....++|+++|++++|||||+++|++.       .+     .   ......+.+.......+......+.|+||||+..+
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            356699999999999999999999852       11     0   01114455555555556556678899999999887


Q ss_pred             ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCcee---cHHHHHHHHHHhC
Q 028381           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKESERVV---TKKEGINFAREYG  151 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~~~  151 (210)
                      .......+..+|++++|+|+.+...-.. .. ++..+.    ..++|.+ +++||+|+......   ..+++..+....+
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g~~~qt-~e-~l~~~~----~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADGPMPQT-RE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchhH-HH-HHHHHH----HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            7766677788999999999987543222 22 222232    3457755 57999999643221   1224455555443


Q ss_pred             -----CeEEEEccCCCC----------CHHHHHHHHHHHH
Q 028381          152 -----CLFIECSAKTRV----------NVQQCFEELVLKI  176 (210)
Q Consensus       152 -----~~~~~~Sa~~~~----------~i~~~~~~l~~~~  176 (210)
                           ++++++||.++.          ++.++++.|...+
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence                 679999999984          5666666666554

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.76  E-value=2.4e-17  Score=132.43  Aligned_cols=147  Identities=16%  Similarity=0.101  Sum_probs=99.9

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCC-------C-----C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN-------F-----E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~-------~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ....++|+++|+.++|||||+++|++..       +     .   ......+.+.....+.++.....+.+|||||++.|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            4567999999999999999999997320       0     0   00113455555555666666778999999999888


Q ss_pred             ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCceec---HHHHHHHHHHhC
Q 028381           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKESERVVT---KKEGINFAREYG  151 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~  151 (210)
                      .......+..+|++++|+|+.+....... . ++..+.    ..++|.+ +++||+|+.+.....   .+++..++...+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e-~l~~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQTR-E-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHHH-H-HHHHHH----HcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            76666666788999999999875333222 2 222232    2356655 689999986543221   234556666554


Q ss_pred             -----CeEEEEccCCCC
Q 028381          152 -----CLFIECSAKTRV  163 (210)
Q Consensus       152 -----~~~~~~Sa~~~~  163 (210)
                           ++++++||.++.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.76  E-value=1.3e-17  Score=136.78  Aligned_cols=157  Identities=17%  Similarity=0.186  Sum_probs=118.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhcc--cC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYY--RG   85 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~~   85 (210)
                      ..+|+++|.||+|||||.|+|++... .....+|.|+...+..+......++++|+||--.+..      ..+.++  .+
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            45699999999999999999997653 4555788888888877776777799999999443332      223333  35


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCH
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (210)
                      .|++|-|+|+++-+.--.+   .++.+     +-+.|++++.|+.|..+.+-+... ...+.+..|+|+++++|++|.|+
T Consensus        82 ~D~ivnVvDAtnLeRnLyl---tlQLl-----E~g~p~ilaLNm~D~A~~~Gi~ID-~~~L~~~LGvPVv~tvA~~g~G~  152 (653)
T COG0370          82 PDLIVNVVDATNLERNLYL---TLQLL-----ELGIPMILALNMIDEAKKRGIRID-IEKLSKLLGVPVVPTVAKRGEGL  152 (653)
T ss_pred             CCEEEEEcccchHHHHHHH---HHHHH-----HcCCCeEEEeccHhhHHhcCCccc-HHHHHHHhCCCEEEEEeecCCCH
Confidence            7999999999987654433   22222     356899999999998655444333 57778889999999999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 028381          166 QQCFEELVLKILDTP  180 (210)
Q Consensus       166 ~~~~~~l~~~~~~~~  180 (210)
                      +++...+.+......
T Consensus       153 ~~l~~~i~~~~~~~~  167 (653)
T COG0370         153 EELKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHHHhccccc
Confidence            999999987665444

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.75  E-value=8.4e-17  Score=114.28  Aligned_cols=160  Identities=19%  Similarity=0.231  Sum_probs=112.8

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc----------ccccc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN-FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----------ERFRT   77 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~   77 (210)
                      -+.+...-|+|+|.+|||||||||+|++.+ ....+.++|.|.....+.+++.   +.++|.||-          +.+..
T Consensus        19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence            345577889999999999999999999966 5777789998888777777665   788899992          22222


Q ss_pred             chhhccc---CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh----
Q 028381           78 LTSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY----  150 (210)
Q Consensus        78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----  150 (210)
                      ....++.   +-.++++++|+..+....+..  .+.++.    ..++|++|++||+|.......... ........    
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~e--m~~~l~----~~~i~~~vv~tK~DKi~~~~~~k~-l~~v~~~l~~~~  168 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPPKDLDRE--MIEFLL----ELGIPVIVVLTKADKLKKSERNKQ-LNKVAEELKKPP  168 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCCcHHHHH--HHHHHH----HcCCCeEEEEEccccCChhHHHHH-HHHHHHHhcCCC
Confidence            3333333   357889999999876554332  344444    467899999999998654333211 12222222    


Q ss_pred             CCe--EEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          151 GCL--FIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       151 ~~~--~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ...  ++..|+..+.|++++...|.+.+..
T Consensus       169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            222  7889999999999999999887743

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.75  E-value=1.9e-17  Score=122.43  Aligned_cols=173  Identities=19%  Similarity=0.212  Sum_probs=112.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCcccccc-----chhhcccCccEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRT-----LTSSYYRGAQGI   89 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~d~~   89 (210)
                      ||+++|+.+|||||+.+.+..+..+......+.|.......+ ......+.+||+||+..+..     .....+++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            799999999999999999997766554444444443333333 23346899999999865443     356678999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCCce--e----cHHHHHHHHHHhC---CeEEEEcc
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDL-YSTNQDCIKLLVGNKVDKESERV--V----TKKEGINFAREYG---CLFIECSA  159 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~--~----~~~~~~~~~~~~~---~~~~~~Sa  159 (210)
                      |||+|+.+.+..+.+.. +...+.. ....++..+.|.++|+|+.....  .    ..+.+...+...+   +.++.+|.
T Consensus        81 IyV~D~qs~~~~~~l~~-~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI  159 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDLAY-LSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI  159 (232)
T ss_dssp             EEEEETT-STCHHHHHH-HHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred             EEEEEcccccHHHHHHH-HHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence            99999996665555544 4444432 23367889999999999853321  1    1223444445555   67888888


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCcccccccCc
Q 028381          160 KTRVNVQQCFEELVLKILDTPSLLAEGSKGL  190 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~  190 (210)
                      -+ ..+-+.|..+++.+..+.+.++...+.+
T Consensus       160 ~D-~Sly~A~S~Ivq~LiP~~~~le~~L~~~  189 (232)
T PF04670_consen  160 WD-ESLYEAWSKIVQKLIPNLSTLENLLNNF  189 (232)
T ss_dssp             TS-THHHHHHHHHHHTTSTTHCCCCCCCCHH
T ss_pred             cC-cHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            88 5899999999999988777776655543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4.7e-18  Score=115.72  Aligned_cols=159  Identities=18%  Similarity=0.245  Sum_probs=122.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .+.-|++|+|-.|+|||||++.|......+..||...+.....+    ....++.+|++|+......|..++..+|++++
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            35568999999999999999999998888888877776665544    56778899999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHH----HHHHHh--------C---CeEEE
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI----NFAREY--------G---CLFIE  156 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~--------~---~~~~~  156 (210)
                      .+|+.|.+.|...+..+...+.. ..-..+|+++.+||+|.+.+...+.-...    .+....        +   ..++-
T Consensus        94 lvda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm  172 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM  172 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence            99999999999888755544443 22467999999999999766432221111    111111        1   13788


Q ss_pred             EccCCCCCHHHHHHHHHHH
Q 028381          157 CSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~  175 (210)
                      ||...+.+.-+.|.|+...
T Consensus       173 csi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  173 CSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEccCccceeeeehhhh
Confidence            9998888888888887654

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.75  E-value=4.5e-17  Score=122.24  Aligned_cols=156  Identities=18%  Similarity=0.227  Sum_probs=107.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEE-EEEEeCCCcccccc-------chhhcccC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK-LAIWDTAGQERFRT-------LTSSYYRG   85 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~D~~g~~~~~~-------~~~~~~~~   85 (210)
                      ...|.++|.|++|||||++.+...+. .......+|.......+...++. +.+-|+||.-+-..       .....+..
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence            45688999999999999999997765 22222233332222233333333 88889999433222       22334678


Q ss_pred             ccEEEEEEECCCc---ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccC
Q 028381           86 AQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAK  160 (210)
Q Consensus        86 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~  160 (210)
                      ++.++||+|++..   +.++.+.. +..+++.|.. ..+.|.++|+||+|+++.   ......+++....-+ ++++||+
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~  350 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAK  350 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeec
Confidence            9999999999998   88888877 5566655533 346899999999998522   222245566666554 9999999


Q ss_pred             CCCCHHHHHHHHHH
Q 028381          161 TRVNVQQCFEELVL  174 (210)
Q Consensus       161 ~~~~i~~~~~~l~~  174 (210)
                      .++++.++++.|.+
T Consensus       351 ~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  351 SGEGLEELLNGLRE  364 (366)
T ss_pred             cccchHHHHHHHhh
Confidence            99999999887765

>CHL00071 tufA elongation factor Tu

Probab=99.74  E-value=9.9e-17  Score=129.32  Aligned_cols=149  Identities=14%  Similarity=0.093  Sum_probs=101.4

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCC---------------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF---------------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ....++|+++|++++|||||+++|++...               .......+.+.......+......+.++|+||+..+
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            45569999999999999999999986411               011113455555544555556677889999999888


Q ss_pred             ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHhC
Q 028381           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREYG  151 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~  151 (210)
                      .......+..+|++++|+|+.....-. ... ++..+.    ..++| +|+++||+|+......   ..+++..+....+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~-~~~~~~----~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMPQ-TKE-HILLAK----QVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcHH-HHH-HHHHHH----HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            777777788999999999998754322 222 222232    34577 7789999999653322   1234455555443


Q ss_pred             -----CeEEEEccCCCCCH
Q 028381          152 -----CLFIECSAKTRVNV  165 (210)
Q Consensus       152 -----~~~~~~Sa~~~~~i  165 (210)
                           ++++++||.+|.++
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        163 FPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCCcceEEEcchhhcccc
Confidence                 67999999998743

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.74  E-value=1.6e-16  Score=118.06  Aligned_cols=152  Identities=15%  Similarity=0.079  Sum_probs=95.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCC-------------ceeeeE----EEE--------------------EEEC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPT-------------IGVDFK----VKY--------------------VDVG   58 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~-------------~~~~~~----~~~--------------------~~~~   58 (210)
                      ||+++|+.++|||||+.+|..+.+......             .|.+..    ...                    -.+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999987655321110             011100    000                    0011


Q ss_pred             CeEEEEEEEeCCCccccccchhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028381           59 GKKLKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (210)
                      .....+.++|+||++.+.......+.  .+|++++|+|+.....-... . ++..+.    ..++|+++|+||+|+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~-~-~l~~l~----~~~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK-E-HLGLAL----ALNIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH-H-HHHHHH----HcCCCEEEEEECccccCHH
Confidence            22457889999999887665444443  68999999999876542222 2 333333    3457999999999985432


Q ss_pred             eec--HHHHHHHHH--------------------------HhCCeEEEEccCCCCCHHHHHHHHH
Q 028381          137 VVT--KKEGINFAR--------------------------EYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus       137 ~~~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      ...  .+++..+..                          ...+|++.+||.+|.|+++++..|.
T Consensus       155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            221  122222221                          1124799999999999999887664

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04169 RF3 RF3 subfamily

Probab=99.73  E-value=1.1e-16  Score=121.82  Aligned_cols=115  Identities=16%  Similarity=0.137  Sum_probs=81.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------C---CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS------------------P---TIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~------------------~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      -+|+++|++|+|||||+++|+...-....                  +   ..+.++......++...+.+++|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            47999999999999999999743211000                  0   11233344445566677899999999998


Q ss_pred             ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      .+.......++.+|++|+|+|+++..... ... +.....    ..++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~-i~~~~~----~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRK-LFEVCR----LRGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHH-HHHHHH----hcCCCEEEEEECCccCCC
Confidence            88776777789999999999998764322 222 222222    346899999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.73  E-value=1.5e-16  Score=116.38  Aligned_cols=160  Identities=19%  Similarity=0.176  Sum_probs=98.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCce---eeeEEEEEEECCeEEEEEEEeCCCccccccc-----hhhccc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIG---VDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-----TSSYYR   84 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----~~~~~~   84 (210)
                      ++||+++|++|+|||||+|.|++..... ...+.+   .+.....+... ....+.+||+||.......     ....+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            4789999999999999999999865432 112222   11111111111 1236899999996532221     122367


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-----------ecHHHHH----HHHHH
Q 028381           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-----------VTKKEGI----NFARE  149 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~----~~~~~  149 (210)
                      .+|+++++.+.    .+......|+..+...    +.|+++|+||+|+.....           ...++.+    .....
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  151 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE  151 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence            78998888432    2344444466666542    578999999999842211           1111112    22222


Q ss_pred             hCC---eEEEEccC--CCCCHHHHHHHHHHHHHcCCCc
Q 028381          150 YGC---LFIECSAK--TRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       150 ~~~---~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      .+.   ++|.+|+.  .+.|+..+.+.++..+.+.+..
T Consensus       152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence            232   48999998  5789999999999999765543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.72  E-value=1.2e-16  Score=130.68  Aligned_cols=153  Identities=20%  Similarity=0.163  Sum_probs=97.8

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------------C-------------------CceeeeEEEEEEEC
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-------------P-------------------TIGVDFKVKYVDVG   58 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-------------~-------------------~~~~~~~~~~~~~~   58 (210)
                      ....++|+++|++++|||||+.+|+...-....             .                   .-+.+.......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            356799999999999999999999754211100             0                   11223333333445


Q ss_pred             CeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028381           59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV  138 (210)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  138 (210)
                      .....+.||||||+..+.......+..+|++++|+|+.....-..... +. .....   ...|+++++||+|+......
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~-l~~~l---g~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SF-IATLL---GIKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HH-HHHHh---CCCceEEEEEeeccccchhH
Confidence            556789999999998876655556789999999999987542221111 11 11111   12478899999998643221


Q ss_pred             cHH----HHHHHHHHh----CCeEEEEccCCCCCHHHH
Q 028381          139 TKK----EGINFAREY----GCLFIECSAKTRVNVQQC  168 (210)
Q Consensus       139 ~~~----~~~~~~~~~----~~~~~~~Sa~~~~~i~~~  168 (210)
                      ..+    +...+....    ..+++++||++|.|+.+.
T Consensus       179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            122    222223333    367999999999999864

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.71  E-value=1.9e-16  Score=127.49  Aligned_cols=148  Identities=23%  Similarity=0.216  Sum_probs=95.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------------------------------CCceeeeEEEEEEECCeEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS--------------------------------PTIGVDFKVKYVDVGGKKL   62 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~   62 (210)
                      +||+++|++++|||||+.+|+...-....                                ..-+.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999643211000                                0122233333344445566


Q ss_pred             EEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec---
Q 028381           63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT---  139 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---  139 (210)
                      .+.++||||++.+.......+..+|++++|+|+.....-+.... |. .+...   ...++++++||+|+.......   
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~-~~~~~---~~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SY-IASLL---GIRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HH-HHHHc---CCCcEEEEEEecccccchHHHHHH
Confidence            89999999998887666677889999999999987643222221 21 22211   123688999999986432211   


Q ss_pred             -HHHHHHHHHHhC---CeEEEEccCCCCCHHH
Q 028381          140 -KKEGINFAREYG---CLFIECSAKTRVNVQQ  167 (210)
Q Consensus       140 -~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  167 (210)
                       .++...+....+   ++++++||++|.|+++
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence             122233333333   4699999999999886

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.71  E-value=1.9e-16  Score=130.54  Aligned_cols=118  Identities=16%  Similarity=0.189  Sum_probs=82.6

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhc--CCCC----------------CCC---CCceeeeEEEEEEECCeEEEEEEEe
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTS--DNFE----------------ELS---PTIGVDFKVKYVDVGGKKLKLAIWD   68 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~--~~~~----------------~~~---~~~~~~~~~~~~~~~~~~~~~~l~D   68 (210)
                      +.....+|+|+|++++|||||.++|+.  +...                +..   ...+.++......+....+.+++||
T Consensus         6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD   85 (526)
T PRK00741          6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD   85 (526)
T ss_pred             hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence            445678999999999999999999973  1110                000   0123333344444555678899999


Q ss_pred             CCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      |||+..+.......++.+|++|+|+|+++.... .... +....    ...++|+++++||+|+.
T Consensus        86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~----~~~~iPiiv~iNK~D~~  144 (526)
T PRK00741         86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRK-LMEVC----RLRDTPIFTFINKLDRD  144 (526)
T ss_pred             CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHH-HHHHH----HhcCCCEEEEEECCccc
Confidence            999998887777788999999999999886432 2223 22222    23578999999999974

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=2.4e-16  Score=125.83  Aligned_cols=166  Identities=18%  Similarity=0.198  Sum_probs=122.6

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCC--------------CCCCCCceeeeEEEEE---EECCeEEEEEEEeCCCc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF--------------EELSPTIGVDFKVKYV---DVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~--------------~~~~~~~~~~~~~~~~---~~~~~~~~~~l~D~~g~   72 (210)
                      +.++.-|+.|+.+..-|||||..+|+...-              -+....-|.|+.....   ..++..+.++++|||||
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            446778999999999999999999973211              0111123444433332   22466699999999999


Q ss_pred             cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH-HHHHHHHHhC
Q 028381           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK-EGINFAREYG  151 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~~  151 (210)
                      ..|.......+..|+++++|+|++..-..+.+..+|+. +     ..+.-+|.|.||+|++.++....+ ++.+.+....
T Consensus       136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA-f-----e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~  209 (650)
T KOG0462|consen  136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLA-F-----EAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP  209 (650)
T ss_pred             ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHH-H-----HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999998888877774443 2     345678999999999877554333 2334444445


Q ss_pred             CeEEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028381          152 CLFIECSAKTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      .+++.+||++|.|+++++..+++.+....-
T Consensus       210 ~~~i~vSAK~G~~v~~lL~AII~rVPpP~~  239 (650)
T KOG0462|consen  210 AEVIYVSAKTGLNVEELLEAIIRRVPPPKG  239 (650)
T ss_pred             cceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence            569999999999999999999999854433

>cd01850 CDC_Septin CDC/Septin

Probab=99.70  E-value=1.1e-15  Score=116.82  Aligned_cols=144  Identities=16%  Similarity=0.196  Sum_probs=94.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc----
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT----   77 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----   77 (210)
                      ..++|+++|++|+|||||+++|++..+...           ..+...+.....+..++..+.+.+|||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999998876433           12444445555556677889999999999432111    


Q ss_pred             ----------------------chhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           78 ----------------------LTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        78 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                                            .....+.  .+|+++++++.+.......-.. ++..+.     ..+|+++|+||+|+.
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~-~lk~l~-----~~v~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE-FMKRLS-----KRVNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH-HHHHHh-----ccCCEEEEEECCCcC
Confidence                                  0101222  4788888888775221111111 233332     258999999999985


Q ss_pred             CCc--eecHHHHHHHHHHhCCeEEEEccCCC
Q 028381          134 SER--VVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus       134 ~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (210)
                      ...  ....+.+.+.+...+++++.......
T Consensus       157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~~  187 (276)
T cd01850         157 TPEELKEFKQRIMEDIEEHNIKIYKFPEDEE  187 (276)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence            432  23455677778888999888776433

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.70  E-value=9.1e-16  Score=123.22  Aligned_cols=159  Identities=14%  Similarity=0.096  Sum_probs=104.4

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCC---------------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF---------------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ....++|+++|++++|||||+++|++...               .......+.+.......+......+.++||||+..+
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            35679999999999999999999986311               001114455555555555555677899999999887


Q ss_pred             ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCcee---cHHHHHHHHHHh-
Q 028381           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKESERVV---TKKEGINFAREY-  150 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~~-  150 (210)
                      .......+..+|++++|+|+.....-. ... ++..+.    ..++|.+ +++||+|+......   ...++..+.... 
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~-~~~~~~----~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPMPQ-TRE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchH-HHH-HHHHHH----HcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            776667788999999999998754322 222 223333    2457875 58999999643221   122344444433 


Q ss_pred             ----CCeEEEEccCCCC----------CHHHHHHHHHHH
Q 028381          151 ----GCLFIECSAKTRV----------NVQQCFEELVLK  175 (210)
Q Consensus       151 ----~~~~~~~Sa~~~~----------~i~~~~~~l~~~  175 (210)
                          .++++++||+++.          ++..+++.|...
T Consensus       163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence                3679999999875          345555555543

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.70  E-value=2.4e-16  Score=120.12  Aligned_cols=141  Identities=13%  Similarity=0.089  Sum_probs=90.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC--C---------------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNF--E---------------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL   78 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (210)
                      +|+++|++++|||||+++|+...-  .               ......+.+.......+......+.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999974211  0               01112344444444444455678999999999888888


Q ss_pred             hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHhCCe-EEE
Q 028381           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFAREYGCL-FIE  156 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~  156 (210)
                      +...++.+|++++|+|+.+...-... . +...+.    ..++|+++++||+|+..... ...++++.......++ .++
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t~-~-~~~~~~----~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~P  154 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQTE-T-VWRQAD----RYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLP  154 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEec
Confidence            88889999999999999886533222 2 222222    34689999999999864321 1122222222222222 677


Q ss_pred             EccCCC
Q 028381          157 CSAKTR  162 (210)
Q Consensus       157 ~Sa~~~  162 (210)
                      +|+..+
T Consensus       155 isa~~~  160 (270)
T cd01886         155 IGEEDD  160 (270)
T ss_pred             cccCCC
Confidence            776633

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PLN03126 Elongation factor Tu; Provisional

Probab=99.70  E-value=2.2e-16  Score=128.70  Aligned_cols=148  Identities=15%  Similarity=0.092  Sum_probs=100.9

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCC------CC---------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN------FE---------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ....++|+++|++++|||||+++|++..      ..         ......+.+.......++.....+.++|+||++.+
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            4567999999999999999999998521      10         11114455555444455555678899999999988


Q ss_pred             ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHh-
Q 028381           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREY-  150 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~-  150 (210)
                      .......+..+|++++|+|+.+...-.. .+ +...+.    ..++| +++++||+|+......   ..+++..+.... 
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e-~~~~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQT-KE-HILLAK----QVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            8777777889999999999997653332 22 333333    23577 7789999999653322   122344554443 


Q ss_pred             ----CCeEEEEccCCCCC
Q 028381          151 ----GCLFIECSAKTRVN  164 (210)
Q Consensus       151 ----~~~~~~~Sa~~~~~  164 (210)
                          .++++++|+.++.+
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence                46799999998854

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=6.6e-16  Score=123.67  Aligned_cols=158  Identities=20%  Similarity=0.191  Sum_probs=110.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      +..=|.++|+..-|||||+..+-......... ....++....+..+- ....+.|+|||||+.|..+...-..-+|+++
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            34568999999999999999998766543322 333334444444431 3456899999999999999888888899999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------CeEEEEccCC
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG---------CLFIECSAKT  161 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~  161 (210)
                      +|+|+++.---+....     +. +....++|++|++||+|.++.+   ......-..++|         ..++++||++
T Consensus        84 LVVa~dDGv~pQTiEA-----I~-hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~t  154 (509)
T COG0532          84 LVVAADDGVMPQTIEA-----IN-HAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKT  154 (509)
T ss_pred             EEEEccCCcchhHHHH-----HH-HHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence            9999998543222221     11 1346789999999999987432   222222222222         3599999999


Q ss_pred             CCCHHHHHHHHHHHHHcC
Q 028381          162 RVNVQQCFEELVLKILDT  179 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~  179 (210)
                      |.|+++++..++-.....
T Consensus       155 g~Gi~eLL~~ill~aev~  172 (509)
T COG0532         155 GEGIDELLELILLLAEVL  172 (509)
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999887655433

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.69  E-value=7.8e-16  Score=113.87  Aligned_cols=112  Identities=18%  Similarity=0.206  Sum_probs=78.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCC------------C---CCceeeeE--EEEEEEC--------CeEEEEEEEeCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEEL------------S---PTIGVDFK--VKYVDVG--------GKKLKLAIWDTA   70 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~------------~---~~~~~~~~--~~~~~~~--------~~~~~~~l~D~~   70 (210)
                      +|+++|+.++|||||+.+|+...-...            .   ...+.+..  ...+.+.        +..+.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999975321100            0   01111211  1122222        447899999999


Q ss_pred             CccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      |+..+.......++.+|++++|+|+.+......... +.. ..    ..++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~-~~----~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQ-AL----KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHH-HH----HcCCCEEEEEECCCcc
Confidence            999999888889999999999999998876554322 222 21    2357999999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.69  E-value=5.9e-16  Score=125.64  Aligned_cols=150  Identities=16%  Similarity=0.146  Sum_probs=104.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCC---------------------------C---CCCCCceeeeEEEEEEECCeE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF---------------------------E---ELSPTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~---------------------------~---~~~~~~~~~~~~~~~~~~~~~   61 (210)
                      ...++|+++|+.++|||||+.+|+...-                           .   ......+.+.......+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            4568999999999999999998863210                           0   001133445555555666777


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccH-------HHHHHHHHHHHhhhccCCCC-cEEEEEeCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF-------TNLSDVWAKEIDLYSTNQDC-IKLLVGNKVDKE  133 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~  133 (210)
                      ..++++|+||++.|.......+..+|++|+|+|+.+.. |       ...+. ......    ..++ ++||++||+|+.
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~e-h~~~~~----~~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTRE-HALLAF----TLGVKQMICCCNKMDAT  158 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHH-HHHHHH----HcCCCcEEEEEEcccCC
Confidence            88999999999999988888899999999999998742 2       12222 222222    2455 468899999985


Q ss_pred             CCc------eecHHHHHHHHHHhC-----CeEEEEccCCCCCHHH
Q 028381          134 SER------VVTKKEGINFAREYG-----CLFIECSAKTRVNVQQ  167 (210)
Q Consensus       134 ~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  167 (210)
                      ...      ....+++..++...+     ++++++||.+|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            211      112345666666665     5699999999999854

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=1.1e-16  Score=122.36  Aligned_cols=151  Identities=17%  Similarity=0.186  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC---C--------------ceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP---T--------------IGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL   78 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~---~--------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (210)
                      +|+++|++|+|||||+++|+.........   .              .+.+.......+......+++|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999997532111000   0              011122222233334567899999999887777


Q ss_pred             hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeE--EE
Q 028381           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLF--IE  156 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~  156 (210)
                      +...++.+|++++|+|+++......... |. .+.    ..++|+++++||+|+....  ..+....+....+.++  +.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~-~~~----~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~  152 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKL-WE-FAD----EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ  152 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHH-HH-HHH----HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence            8888999999999999998765543322 33 222    3468999999999986542  1222333434455543  44


Q ss_pred             EccCCCCCHHHHHHHHHH
Q 028381          157 CSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~  174 (210)
                      ++..++.++..+.+.+..
T Consensus       153 ip~~~~~~~~~~vd~~~~  170 (268)
T cd04170         153 LPIGEGDDFKGVVDLLTE  170 (268)
T ss_pred             ecccCCCceeEEEEcccC
Confidence            445666665554444433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PLN03127 Elongation factor Tu; Provisional

Probab=99.69  E-value=1.9e-15  Score=122.66  Aligned_cols=160  Identities=16%  Similarity=0.082  Sum_probs=103.7

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcC------CCC---------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD------NFE---------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ....++|+++|++++|||||+++|.+.      ...         ......+.+.......++.....+.++||||+..+
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            346699999999999999999999722      100         01113555666666666666778999999999887


Q ss_pred             ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCceec---HHHHHHHHHHh-
Q 028381           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVT---KKEGINFAREY-  150 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~-  150 (210)
                      .......+..+|++++|+|+.+...-+. .+ .+..+.    ..++| +|+++||+|+.+.....   .+++..+.... 
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e-~l~~~~----~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~  211 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KE-HILLAR----QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK  211 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HH-HHHHHH----HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence            7666666678999999999987643222 22 222232    34578 47889999996432211   11223333322 


Q ss_pred             ----CCeEEEEccC---CCCC-------HHHHHHHHHHHH
Q 028381          151 ----GCLFIECSAK---TRVN-------VQQCFEELVLKI  176 (210)
Q Consensus       151 ----~~~~~~~Sa~---~~~~-------i~~~~~~l~~~~  176 (210)
                          .++++++|+.   ++.|       +.++++.+...+
T Consensus       212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence                3678888876   4444       667777666654

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.69  E-value=8.4e-16  Score=124.80  Aligned_cols=151  Identities=17%  Similarity=0.136  Sum_probs=100.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC--CC----------------------------CCCCCceeeeEEEEEEECCeE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FE----------------------------ELSPTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~~~~   61 (210)
                      ...++|+++|+.++|||||+.+|+...  ..                            ......+.+.......+....
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            456899999999999999999997511  00                            001133445555555566677


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCccc---H---HHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---F---TNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKES  134 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  134 (210)
                      ..++|+|+||+..|.......+..+|++++|+|+.....   +   ......|. .+.    ..++| +||++||+|.+.
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~----~~gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAF----TLGVKQMIVCINKMDDKT  159 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHH----HcCCCeEEEEEEcccccc
Confidence            889999999999988888888899999999999987531   1   12222122 222    24555 678999999532


Q ss_pred             --Ccee----cHHHHHHHHHHh-----CCeEEEEccCCCCCHHH
Q 028381          135 --ERVV----TKKEGINFAREY-----GCLFIECSAKTRVNVQQ  167 (210)
Q Consensus       135 --~~~~----~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  167 (210)
                        ....    ..+++..++...     .++++++|+.+|+|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              1111    123344444433     35799999999999864

>COG2262 HflX GTPases [General function prediction only]

Probab=99.68  E-value=2.1e-15  Score=117.37  Aligned_cols=165  Identities=18%  Similarity=0.147  Sum_probs=108.9

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-ccc-chhh-----
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRT-LTSS-----   81 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~-~~~~-----   81 (210)
                      .......|.++|..|+|||||+|+|++.... ........+.....+.+.+ ...+.+-||.|.-. ... +..+     
T Consensus       188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL  266 (411)
T COG2262         188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL  266 (411)
T ss_pred             cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence            3456689999999999999999999976532 2222222223333344443 34567779999422 121 2222     


Q ss_pred             -cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028381           82 -YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        82 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (210)
                       -...+|.++.|+|++++.....+.. ....+.. ....++|+|+|.||+|+..... .   ...+..... ..+.+||+
T Consensus       267 EE~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~e-l~~~~~p~i~v~NKiD~~~~~~-~---~~~~~~~~~-~~v~iSA~  339 (411)
T COG2262         267 EEVKEADLLLHVVDASDPEILEKLEA-VEDVLAE-IGADEIPIILVLNKIDLLEDEE-I---LAELERGSP-NPVFISAK  339 (411)
T ss_pred             HHhhcCCEEEEEeecCChhHHHHHHH-HHHHHHH-cCCCCCCEEEEEecccccCchh-h---hhhhhhcCC-CeEEEEec
Confidence             2457999999999999976666655 4444544 2345599999999999754433 1   111111112 58999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCc
Q 028381          161 TRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      ++.|++.++..|.+.+......
T Consensus       340 ~~~gl~~L~~~i~~~l~~~~~~  361 (411)
T COG2262         340 TGEGLDLLRERIIELLSGLRTE  361 (411)
T ss_pred             cCcCHHHHHHHHHHHhhhcccc
Confidence            9999999999999998755443

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.68  E-value=3.7e-16  Score=104.67  Aligned_cols=105  Identities=24%  Similarity=0.249  Sum_probs=67.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeEEEEEEEeCCCcccc---------ccchhhccc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKKLKLAIWDTAGQERF---------RTLTSSYYR   84 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~~   84 (210)
                      +|+|+|.+|+|||||+|+|++......+...+.+...  ..+.+++..  +.++||||....         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999986543333322332222  333445544  468999995321         111223348


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028381           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (210)
                      .+|++++|+|++++.. +.... ++..+    . .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~-~~~~l----~-~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKN-ILREL----K-NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHH-HHHHH----H-TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHH-HHHHH----h-cCCCEEEEEcC
Confidence            8999999999877322 22222 33333    1 56899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.68  E-value=3.1e-15  Score=109.35  Aligned_cols=162  Identities=12%  Similarity=0.102  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc-----------chhhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-----------LTSSY   82 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~~~   82 (210)
                      ++|+++|.+|+|||||+|.+++........ ..+.+..............+.++||||......           .+...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            479999999999999999999876543221 222222222221111345789999999543321           11122


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCcee------cHHHHHHHHHHhCCeEE
Q 028381           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVV------TKKEGINFAREYGCLFI  155 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~  155 (210)
                      ..+.|++++|+++.+ .+-... . .+..+... ....-.+++++.|+.|......+      .....+.+....+..++
T Consensus        81 ~~g~~~illVi~~~~-~t~~d~-~-~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~  157 (196)
T cd01852          81 APGPHAFLLVVPLGR-FTEEEE-Q-AVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV  157 (196)
T ss_pred             CCCCEEEEEEEECCC-cCHHHH-H-HHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence            467899999999887 332221 1 23333321 11223578899999986443211      11345555666666666


Q ss_pred             EEcc-----CCCCCHHHHHHHHHHHHHcC
Q 028381          156 ECSA-----KTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       156 ~~Sa-----~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ..+.     ..+.++.++++.+.+.+.++
T Consensus       158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~  186 (196)
T cd01852         158 AFNNKAKGEEQEQQVKELLAKVESMVKEN  186 (196)
T ss_pred             EEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence            6654     45678999999999988763

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK13351 elongation factor G; Reviewed

Probab=99.67  E-value=6.2e-16  Score=132.35  Aligned_cols=119  Identities=16%  Similarity=0.225  Sum_probs=84.8

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCC--------------CCCC---CceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--------------ELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      +.+...+|+|+|+.++|||||+++|+...-.              ...+   ..+.+.......+......+++|||||+
T Consensus         4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~   83 (687)
T PRK13351          4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH   83 (687)
T ss_pred             ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence            3456789999999999999999999753210              0000   1222333222334445678999999999


Q ss_pred             cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      ..+...+...++.+|++++|+|+++......... |.. +.    ..++|+++++||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~~-~~----~~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WRQ-AD----RYGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HH----hcCCCEEEEEECCCCCC
Confidence            9888888889999999999999998876654433 432 22    34689999999999853

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.66  E-value=3.6e-15  Score=112.82  Aligned_cols=157  Identities=21%  Similarity=0.186  Sum_probs=104.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc-----cccccchhh---ccc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-----ERFRTLTSS---YYR   84 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----~~~~~~~~~---~~~   84 (210)
                      ....|+|.|+||||||||++.+++.+. +..+.+.+|-.....+++....+++++||||.     ++....-..   .++
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~  245 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR  245 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence            567899999999999999999997765 23333444444444566666778999999992     222221111   122


Q ss_pred             -CccEEEEEEECCCc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccC
Q 028381           85 -GAQGIIMVYDVTRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAK  160 (210)
Q Consensus        85 -~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~  160 (210)
                       -.++++|++|++..  .+.+.-.. ++..+...   -+.|+++|.||+|..+.+.+...  .......+.. ...+++.
T Consensus       246 hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~--~~~~~~~~~~~~~~~~~~  319 (346)
T COG1084         246 HLAGVILFLFDPSETCGYSLEEQIS-LLEEIKEL---FKAPIVVVINKIDIADEEKLEEI--EASVLEEGGEEPLKISAT  319 (346)
T ss_pred             HhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHh---cCCCeEEEEecccccchhHHHHH--HHHHHhhccccccceeee
Confidence             35889999998864  34554444 44555542   23899999999998755444333  3334444444 7889999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028381          161 TRVNVQQCFEELVLKI  176 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~  176 (210)
                      .+.+++..-..+....
T Consensus       320 ~~~~~d~~~~~v~~~a  335 (346)
T COG1084         320 KGCGLDKLREEVRKTA  335 (346)
T ss_pred             ehhhHHHHHHHHHHHh
Confidence            9999888777777664

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.66  E-value=5.9e-15  Score=111.37  Aligned_cols=156  Identities=21%  Similarity=0.113  Sum_probs=106.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhccc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYR   84 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~   84 (210)
                      +--.+++++|+|++|||||++.|++-+. +......+|.......+.+...++++.|+||.-.-.       ......++
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            3457899999999999999999997664 222233344445555566678889999999832211       23556789


Q ss_pred             CccEEEEEEECCCccc-HHHHHHHHHHHHhhhcc----------------------------------------------
Q 028381           85 GAQGIIMVYDVTRRDT-FTNLSDVWAKEIDLYST----------------------------------------------  117 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~----------------------------------------------  117 (210)
                      +||.+++|+|+....+ .+.+.. .+.......+                                              
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~-ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIER-ELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHH-HHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            9999999999997554 222222 1111111100                                              


Q ss_pred             ------------------CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          118 ------------------NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       118 ------------------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                                        ..-+|.++|.||.|+..     .++...+.+..  .++.+||+.+.|++++.+.|.+.+
T Consensus       219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                              12468899999999864     23333333333  789999999999999999999877

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.66  E-value=2.5e-15  Score=127.37  Aligned_cols=152  Identities=22%  Similarity=0.168  Sum_probs=96.6

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------------C-------------------CceeeeEEEEEEEC
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-------------P-------------------TIGVDFKVKYVDVG   58 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-------------~-------------------~~~~~~~~~~~~~~   58 (210)
                      ....++|+++|++++|||||+++|+...-....             .                   ..+.+.......+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            345689999999999999999999854321110             0                   11222333333444


Q ss_pred             CeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028381           59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV  138 (210)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  138 (210)
                      .....+.|+||||++.+.......+..+|++++|+|+.....-.....  ...+...   ...+++|++||+|+......
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~--~~~~~~~---~~~~iivvvNK~D~~~~~~~  175 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH--SFIASLL---GIRHVVLAVNKMDLVDYDQE  175 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH--HHHHHHh---CCCeEEEEEEecccccchhH
Confidence            455678899999998876655566789999999999987543222111  1122211   12578899999998642211


Q ss_pred             cH----HHHHHHHHHhC---CeEEEEccCCCCCHHH
Q 028381          139 TK----KEGINFAREYG---CLFIECSAKTRVNVQQ  167 (210)
Q Consensus       139 ~~----~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  167 (210)
                      ..    .+...+....+   ++++++||++|.|+.+
T Consensus       176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            11    22333334444   4599999999999874

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.65  E-value=3e-15  Score=121.33  Aligned_cols=163  Identities=14%  Similarity=0.150  Sum_probs=103.9

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--Cceee----eEEEE------------E-EECC------------
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVD----FKVKY------------V-DVGG------------   59 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~----~~~~~------------~-~~~~------------   59 (210)
                      ....++|.++|+...|||||++.|++-.......  ..+.+    +....            + ....            
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            3567899999999999999999999643211110  11111    11000            0 0000            


Q ss_pred             ----eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           60 ----KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        60 ----~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                          ....+.++|+||++.+.......+..+|++++|+|+.+......... .+.....   ..-.++++|+||+|+.+.
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e-hl~i~~~---lgi~~iIVvlNKiDlv~~  186 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE-HLAAVEI---MKLKHIIILQNKIDLVKE  186 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-HHHHHHH---cCCCcEEEEEecccccCH
Confidence                02468899999999888777777889999999999997421122222 2222221   112468899999999643


Q ss_pred             cee--cHHHHHHHHHH---hCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          136 RVV--TKKEGINFARE---YGCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       136 ~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ...  ..+++..+...   ...+++++||++|.|++.+++.|.+.+.
T Consensus       187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            221  12233333332   3578999999999999999999887554

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.65  E-value=6e-16  Score=109.85  Aligned_cols=119  Identities=21%  Similarity=0.285  Sum_probs=73.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhc---ccCccEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSY---YRGAQGI   89 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~---~~~~d~~   89 (210)
                      .-.|+++|+.|+|||+|...|..+...+..........   +.+ ......+.++|+|||...+......   ...+.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            34689999999999999999999866544333322211   112 2233467888999999988754443   7789999


Q ss_pred             EEEEECCC-cccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCC
Q 028381           90 IMVYDVTR-RDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        90 i~v~d~~~-~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~  135 (210)
                      |||+|.+. ...+..+.++++..+..-. ....+|++|+.||+|+..+
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            99999874 3345555554555444322 3457899999999998644

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=2.7e-15  Score=118.18  Aligned_cols=171  Identities=20%  Similarity=0.227  Sum_probs=122.5

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCC--------------CCCCCCceeeeEEEE----EEE-CCeEEEEEEEeCCC
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--------------EELSPTIGVDFKVKY----VDV-GGKKLKLAIWDTAG   71 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~--------------~~~~~~~~~~~~~~~----~~~-~~~~~~~~l~D~~g   71 (210)
                      ....-+..++.+-.-|||||..|++....              .+....-|.|+....    +.. ++..+.++++||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            34556788999999999999999863210              011112333443333    222 66789999999999


Q ss_pred             ccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC
Q 028381           72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG  151 (210)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  151 (210)
                      |..|.......+..|.+.++|+|++..-..+.+.+.|+ .+     ..+.-+|-|.||+||+.++....  ..++..-.|
T Consensus        86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~Yl-Al-----e~~LeIiPViNKIDLP~Adperv--k~eIe~~iG  157 (603)
T COG0481          86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-AL-----ENNLEIIPVLNKIDLPAADPERV--KQEIEDIIG  157 (603)
T ss_pred             ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHH-HH-----HcCcEEEEeeecccCCCCCHHHH--HHHHHHHhC
Confidence            99999888889999999999999999887777777333 33     34567899999999986644322  233344456


Q ss_pred             Ce---EEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCccc
Q 028381          152 CL---FIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKK  192 (210)
Q Consensus       152 ~~---~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~  192 (210)
                      ++   .+.+|||+|.||+++++.|++++....   ....++.++
T Consensus       158 id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~---g~~~~pLkA  198 (603)
T COG0481         158 IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK---GDPDAPLKA  198 (603)
T ss_pred             CCcchheeEecccCCCHHHHHHHHHhhCCCCC---CCCCCcceE
Confidence            54   789999999999999999999984433   444555544

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=6.1e-15  Score=117.96  Aligned_cols=153  Identities=17%  Similarity=0.138  Sum_probs=110.1

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ..++-=|.++|+..-|||||+..|-+........   |.....+...++ +|  -.++|.|||||..|..+...-..-.|
T Consensus       150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtD  226 (683)
T KOG1145|consen  150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTD  226 (683)
T ss_pred             CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCcccc
Confidence            3466778999999999999999998776543222   444333444443 33  67899999999999999988888899


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------CeEEEEc
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG---------CLFIECS  158 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~S  158 (210)
                      ++++|+.+.|.---+.+.     .|. ++...++|+||++||+|.+...   .+.+.+....+|         +.++++|
T Consensus       227 IvVLVVAadDGVmpQT~E-----aIk-hAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiS  297 (683)
T KOG1145|consen  227 IVVLVVAADDGVMPQTLE-----AIK-HAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPIS  297 (683)
T ss_pred             EEEEEEEccCCccHhHHH-----HHH-HHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEee
Confidence            999999999864332222     222 2457889999999999987543   233333333333         4589999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 028381          159 AKTRVNVQQCFEELVLK  175 (210)
Q Consensus       159 a~~~~~i~~~~~~l~~~  175 (210)
                      |++|.|++.+-+.++-.
T Consensus       298 Al~g~nl~~L~eaill~  314 (683)
T KOG1145|consen  298 ALTGENLDLLEEAILLL  314 (683)
T ss_pred             cccCCChHHHHHHHHHH
Confidence            99999999988776643

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=8.8e-16  Score=121.39  Aligned_cols=168  Identities=21%  Similarity=0.211  Sum_probs=115.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-c--------chhhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-T--------LTSSY   82 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~--------~~~~~   82 (210)
                      +..++|+++|+||+|||||+|.|...+...+++.+|+|.......++-..+.+.+.||+|..+-. .        .....
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            45699999999999999999999999999999999999988888887777889999999965511 1        12334


Q ss_pred             ccCccEEEEEEECCCcccHHHHH-HHHHHHHhhh-----ccCCCCcEEEEEeCCCCCCCc-eecHHHHHHHHHHhC---C
Q 028381           83 YRGAQGIIMVYDVTRRDTFTNLS-DVWAKEIDLY-----STNQDCIKLLVGNKVDKESER-VVTKKEGINFAREYG---C  152 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~-----~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~---~  152 (210)
                      +..+|++++|+|+........+. ...+......     ......+++++.||.|+.... .....- ..+....+   .
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~~  424 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSVF  424 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCccc
Confidence            67899999999995433333322 1122222211     111236889999999986541 121111 11111122   2


Q ss_pred             e-EEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028381          153 L-FIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       153 ~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      + ..++|+++++|++++.+.+.+.+....
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~  453 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERLV  453 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence            3 566999999999999999998875544

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.64  E-value=4.2e-15  Score=115.36  Aligned_cols=163  Identities=19%  Similarity=0.249  Sum_probs=98.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEE-------------------ECC-eEEEEEEEeCCCc-
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVD-------------------VGG-KKLKLAIWDTAGQ-   72 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~~~-~~~~--~~~~~~~~~~~~-------------------~~~-~~~~~~l~D~~g~-   72 (210)
                      |+++|.|+||||||+++|++.... ..++  |...+.....+.                   .++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987642 1222  222222222111                   122 3478999999996 


Q ss_pred             ---cccccchhh---cccCccEEEEEEECCCc-------------c---cHHHHHHHHHHH-------------------
Q 028381           73 ---ERFRTLTSS---YYRGAQGIIMVYDVTRR-------------D---TFTNLSDVWAKE-------------------  111 (210)
Q Consensus        73 ---~~~~~~~~~---~~~~~d~~i~v~d~~~~-------------~---s~~~~~~~~~~~-------------------  111 (210)
                         +....+...   .++.+|++++|+|+...             +   .++.+...+...                   
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               333333333   48999999999998731             1   121111111100                   


Q ss_pred             -------------------------Hhh--------------------hccCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q 028381          112 -------------------------IDL--------------------YSTNQDCIKLLVGNKVDKESERVVTKKEGINF  146 (210)
Q Consensus       112 -------------------------~~~--------------------~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  146 (210)
                                               +..                    ......+|+|+|+||.|+.......    ..+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~----~~l  236 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNI----SKL  236 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHH----HHH
Confidence                                     000                    0012347999999999975332211    122


Q ss_pred             HHHh-CCeEEEEccCCCCCHHHHHH-HHHHHHHcCCCcc
Q 028381          147 AREY-GCLFIECSAKTRVNVQQCFE-ELVLKILDTPSLL  183 (210)
Q Consensus       147 ~~~~-~~~~~~~Sa~~~~~i~~~~~-~l~~~~~~~~~~~  183 (210)
                      .... ..+++.+||+.+.+++++.+ .+.+.+.+.....
T Consensus       237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~  275 (318)
T cd01899         237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFE  275 (318)
T ss_pred             HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCce
Confidence            2222 45699999999999999998 6888886665444

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.63  E-value=9.2e-15  Score=111.15  Aligned_cols=162  Identities=19%  Similarity=0.167  Sum_probs=108.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYR   84 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~   84 (210)
                      .-|.++|.|++|||||++.+...+. ...|+  |.........+   ...-.+.+=|+||.-+-.       ......+.
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE  236 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIE  236 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence            4577999999999999999997764 23444  33333333333   233457777999943222       12233467


Q ss_pred             CccEEEEEEECCCccc---HHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEcc
Q 028381           85 GAQGIIMVYDVTRRDT---FTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSA  159 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa  159 (210)
                      ++.+++.|+|++..+.   .++... +..++..| ..-.++|.+||+||+|+........+....+....+.. .+++|+
T Consensus       237 Rt~vL~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa  315 (369)
T COG0536         237 RTRVLLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISA  315 (369)
T ss_pred             hhheeEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeeh
Confidence            8999999999986553   444444 45555554 23457899999999997655444444455555555544 222999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCC
Q 028381          160 KTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      .++.|++++...+.+.+.+..
T Consensus       316 ~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         316 LTREGLDELLRALAELLEETK  336 (369)
T ss_pred             hcccCHHHHHHHHHHHHHHhh
Confidence            999999999999998887765

>TIGR00503 prfC peptide chain release factor 3

Probab=99.61  E-value=1.1e-15  Score=126.07  Aligned_cols=121  Identities=16%  Similarity=0.191  Sum_probs=84.8

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC----------------CC---CCceeeeEEEEEEECCeEEEEEEE
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTS--DNFEE----------------LS---PTIGVDFKVKYVDVGGKKLKLAIW   67 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~--~~~~~----------------~~---~~~~~~~~~~~~~~~~~~~~~~l~   67 (210)
                      .+..+..+|+|+|++++|||||+++|+.  +....                ..   ...+.++......++...+.+++|
T Consensus         6 ~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inli   85 (527)
T TIGR00503         6 KEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLL   85 (527)
T ss_pred             hhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEE
Confidence            4456778999999999999999999863  11100                00   022344444445566677899999


Q ss_pred             eCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           68 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      ||||+..+.......++.+|++|+|+|+++...- .... +.....    ..++|+++++||+|+...
T Consensus        86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~~----~~~~PiivviNKiD~~~~  147 (527)
T TIGR00503        86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRK-LMEVTR----LRDTPIFTFMNKLDRDIR  147 (527)
T ss_pred             ECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHH-HHHHHH----hcCCCEEEEEECccccCC
Confidence            9999988877666778999999999999875321 2222 333222    356899999999998643

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK12739 elongation factor G; Reviewed

Probab=99.61  E-value=2.3e-14  Score=122.59  Aligned_cols=118  Identities=14%  Similarity=0.141  Sum_probs=82.1

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCC--CC---CC------------CCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--EE---LS------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~--~~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      .+...+|+|+|++++|||||+++|+...-  ..   ..            ...+.+.......+......++++||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            45678999999999999999999974211  00   00            122333333333344456789999999998


Q ss_pred             ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      .+...+...++.+|++++|+|+.+...-... . ....+.    ..++|+++++||+|+..
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~-i~~~~~----~~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-T-VWRQAD----KYGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECCCCCC
Confidence            8777788888999999999999887543332 2 222222    34689999999999863

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=1.1e-14  Score=113.27  Aligned_cols=153  Identities=20%  Similarity=0.140  Sum_probs=103.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC------------------------C------CCCCCCceeeeEEEEEEECCeE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDN------------------------F------EELSPTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~------------------------~------~~~~~~~~~~~~~~~~~~~~~~   61 (210)
                      ...++++|+|+..+|||||+-+|+...                        |      ......-|.|+......++...
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            456899999999999999999986321                        0      0011134556666666677778


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHH------HHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT------NLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      +.++++|+||+..+.......+..+|+.|+|+|+.+.+...      ..++ . .++.....  -.-+||++||+|+.+-
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H-~~La~tlG--i~~lIVavNKMD~v~w  160 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-H-AFLARTLG--IKQLIVAVNKMDLVSW  160 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-H-HHHHHhcC--CceEEEEEEccccccc
Confidence            89999999999999888888899999999999999874111      1111 1 11111111  2356888999999763


Q ss_pred             ceecHHHH----HHHHHHhC-----CeEEEEccCCCCCHHHH
Q 028381          136 RVVTKKEG----INFAREYG-----CLFIECSAKTRVNVQQC  168 (210)
Q Consensus       136 ~~~~~~~~----~~~~~~~~-----~~~~~~Sa~~~~~i~~~  168 (210)
                      +....+++    ..+.+..|     ++|+++|+..|.|+.+.
T Consensus       161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            33333332    23333333     56999999999997653

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.61  E-value=5e-15  Score=96.45  Aligned_cols=137  Identities=20%  Similarity=0.154  Sum_probs=98.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc----hhhcccCccEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL----TSSYYRGAQGII   90 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----~~~~~~~~d~~i   90 (210)
                      -||.++|..|+|||||.+.|.+... .+..|...++...           -.+||||.-.-...    .......+|+++
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~-lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDT-LYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchh-hhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            3799999999999999999997654 2333444433211           12499994333332    334456899999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-EEEEccCCCCCHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCF  169 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~  169 (210)
                      +|-+++++++-..-.  +       ..-...|+|-|++|.|+++  ..+.+..+.|..+-|.. +|++|+.++.|+++++
T Consensus        70 ~v~~and~~s~f~p~--f-------~~~~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~  138 (148)
T COG4917          70 YVHAANDPESRFPPG--F-------LDIGVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELV  138 (148)
T ss_pred             eeecccCccccCCcc--c-------ccccccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHH
Confidence            999999987643221  1       1123456899999999975  45566788898888875 9999999999999999


Q ss_pred             HHHHH
Q 028381          170 EELVL  174 (210)
Q Consensus       170 ~~l~~  174 (210)
                      +.+..
T Consensus       139 ~~L~~  143 (148)
T COG4917         139 DYLAS  143 (148)
T ss_pred             HHHHh
Confidence            98764

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.60  E-value=1.1e-14  Score=124.50  Aligned_cols=144  Identities=15%  Similarity=0.143  Sum_probs=94.6

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCC--C---CCC------------CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--E---LSP------------TIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~--~---~~~------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      .+...+|+|+|++++|||||+++|+...-.  .   ...            ..+.+.......+......+.+|||||+.
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~   86 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV   86 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence            445679999999999999999999742110  0   000            22344444444444456789999999998


Q ss_pred             ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe
Q 028381           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL  153 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      .+...+...++.+|++++|+|+.+......... |. .+.    ..++|+++++||+|+....  .......+...++..
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~-~~~----~~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~  158 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETV-WR-QAN----RYEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGAN  158 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHH-HH-HHH----HcCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCC
Confidence            877778888999999999999998765543322 32 222    3468999999999997543  112233333333321


Q ss_pred             ----EEEEccCCC
Q 028381          154 ----FIECSAKTR  162 (210)
Q Consensus       154 ----~~~~Sa~~~  162 (210)
                          .+++|+..+
T Consensus       159 ~~~~~ipis~~~~  171 (689)
T TIGR00484       159 AVPIQLPIGAEDN  171 (689)
T ss_pred             ceeEEeccccCCC
Confidence                566666555

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.60  E-value=8.4e-15  Score=108.43  Aligned_cols=164  Identities=20%  Similarity=0.268  Sum_probs=108.0

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEE-EEECCeEEEEEEEeCCCccc-------cccchhh
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKY-VDVGGKKLKLAIWDTAGQER-------FRTLTSS   81 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~l~D~~g~~~-------~~~~~~~   81 (210)
                      ....++|+++|..|+|||||||+|+.+...+... ..+.+..... ..+++  -.+.+||+||..+       +......
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            4567999999999999999999999776655443 2222221111 12233  4589999999544       5566777


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-------eecHHHHHHHH-------
Q 028381           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-------VVTKKEGINFA-------  147 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~~-------  147 (210)
                      .+.+.|.++++.+..++.---.... |...+..   ..+.++++++|..|...+-       ......++++.       
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~~f-~~dVi~~---~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~  189 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDEDF-LRDVIIL---GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL  189 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCHHH-HHHHHHh---ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence            8889999999999998764333332 4444433   3347899999999985431       01111111111       


Q ss_pred             -HHh--CCeEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028381          148 -REY--GCLFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       148 -~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                       +..  --|++..+...+.|++.+...++..+....
T Consensus       190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~  225 (296)
T COG3596         190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEA  225 (296)
T ss_pred             HHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence             111  235788888999999999999999886443

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.58  E-value=9e-14  Score=111.09  Aligned_cols=168  Identities=21%  Similarity=0.242  Sum_probs=100.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCC--CceeeeEEEEEE-------------------EC-CeEEEEEEEeCCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSP--TIGVDFKVKYVD-------------------VG-GKKLKLAIWDTAG   71 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~-~~~--~~~~~~~~~~~~-------------------~~-~~~~~~~l~D~~g   71 (210)
                      ++|+++|.|+||||||+++|++..+.. .++  |...+.....+.                   .+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            689999999999999999999876532 222  212222221110                   11 2346789999999


Q ss_pred             ccc----cccchhhc---ccCccEEEEEEECCCc-------------c---cHHHHHHH------------HHHHHh---
Q 028381           72 QER----FRTLTSSY---YRGAQGIIMVYDVTRR-------------D---TFTNLSDV------------WAKEID---  113 (210)
Q Consensus        72 ~~~----~~~~~~~~---~~~~d~~i~v~d~~~~-------------~---s~~~~~~~------------~~~~~~---  113 (210)
                      ...    ...+-..+   ++.+|++++|+|+...             +   .++.+...            |-...+   
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~  161 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ  161 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            422    22222233   8899999999999721             0   11111110            000000   


Q ss_pred             -------------------------h----h--------------------ccCCCCcEEEEEeCCCCCCCceecHHHHH
Q 028381          114 -------------------------L----Y--------------------STNQDCIKLLVGNKVDKESERVVTKKEGI  144 (210)
Q Consensus       114 -------------------------~----~--------------------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  144 (210)
                                               .    .                    .....+|+++|+||.|+...... .....
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~-l~~i~  240 (396)
T PRK09602        162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEEN-IERLK  240 (396)
T ss_pred             cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHH-HHHHH
Confidence                                     0    0                    01135899999999997532211 12222


Q ss_pred             HHHHHhCCeEEEEccCCCCCHHH-HHHHHHHHHHcCCCccccc
Q 028381          145 NFAREYGCLFIECSAKTRVNVQQ-CFEELVLKILDTPSLLAEG  186 (210)
Q Consensus       145 ~~~~~~~~~~~~~Sa~~~~~i~~-~~~~l~~~~~~~~~~~~~~  186 (210)
                      .+   .+..++++||+.+.++++ +.+.+++.+...+..++.+
T Consensus       241 ~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d  280 (396)
T PRK09602        241 EE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILG  280 (396)
T ss_pred             hc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccc
Confidence            22   345699999999999999 7888888877766665543

>PRK09866 hypothetical protein; Provisional

Probab=99.57  E-value=2.7e-13  Score=111.63  Aligned_cols=109  Identities=15%  Similarity=0.112  Sum_probs=72.8

Q ss_pred             EEEEEEeCCCcccc-----ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028381           62 LKLAIWDTAGQERF-----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        62 ~~~~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (210)
                      .++.|+||||....     .......+..+|++++|+|+....+.... . +...+...  ....|+++|+||+|+.+..
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-e-Ilk~Lkk~--~K~~PVILVVNKIDl~dre  305 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-E-VREAILAV--GQSVPLYVLVNKFDQQDRN  305 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-H-HHHHHHhc--CCCCCEEEEEEcccCCCcc
Confidence            35789999996542     22334468899999999999875443332 1 33444331  2235999999999986443


Q ss_pred             eecHHHHHHHHH----HhC---CeEEEEccCCCCCHHHHHHHHHH
Q 028381          137 VVTKKEGINFAR----EYG---CLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       137 ~~~~~~~~~~~~----~~~---~~~~~~Sa~~~~~i~~~~~~l~~  174 (210)
                      ....+.+..+..    ..+   ..++++||+.|.|++.+++.|..
T Consensus       306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            333444444432    122   24999999999999999888876

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=5.5e-14  Score=100.09  Aligned_cols=157  Identities=20%  Similarity=0.243  Sum_probs=101.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc---CccEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR---GAQGII   90 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~i   90 (210)
                      .-.|+++|+.+||||+|...|..+.+......+.......  .+  ....++++|.|||...+.....++.   .+-++|
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~--r~--gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATY--RL--GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeE--ee--cCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            3579999999999999999999886655444333322222  22  2223789999999988876666665   789999


Q ss_pred             EEEECCC-cccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCc--eecH--------------------------
Q 028381           91 MVYDVTR-RDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESER--VVTK--------------------------  140 (210)
Q Consensus        91 ~v~d~~~-~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~--~~~~--------------------------  140 (210)
                      +|+|..- ......+.++++..+... .....+|++++-||.|+.-+.  ....                          
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~  193 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA  193 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            9999653 233444555344444332 135568999999999983221  0000                          


Q ss_pred             ------HHHHH--HHH--HhCCeEEEEccCCCCCHHHHHHHHHHH
Q 028381          141 ------KEGIN--FAR--EYGCLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       141 ------~~~~~--~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (210)
                            ..+..  |..  ...+.+.++|++++ +++++-+|+.+.
T Consensus       194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                  00111  111  12356899999998 899999998765

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=3.4e-14  Score=107.10  Aligned_cols=190  Identities=15%  Similarity=0.124  Sum_probs=131.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--Cceee--------------------eEEEEEEEC------CeEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVD--------------------FKVKYVDVG------GKKLK   63 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~--------------------~~~~~~~~~------~~~~~   63 (210)
                      ...++|.++|+..-|||||.+.|.+-.....+.  .-+.+                    .+...-...      .--..
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            567999999999999999999997643211111  00000                    000000000      11246


Q ss_pred             EEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHH
Q 028381           64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKK  141 (210)
Q Consensus        64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~  141 (210)
                      +.|+|.|||+-+-+....-..-.|++++|++++.+..-.+..+ .+..+...   .-..+|++-||+|+...+.  ..++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~E-Hl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~  163 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTRE-HLMALEII---GIKNIIIVQNKIDLVSRERALENYE  163 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHH-HHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence            7889999998776666666667899999999998655444444 33333331   1246889999999965543  3556


Q ss_pred             HHHHHHHHh---CCeEEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCcc
Q 028381          142 EGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAA  205 (210)
Q Consensus       142 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (210)
                      ++++|.+..   +.|++++||..+.|++-+++.|.+.+........+.....-...|...++.++..
T Consensus       164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~  230 (415)
T COG5257         164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPE  230 (415)
T ss_pred             HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHH
Confidence            677777643   6789999999999999999999999988888888887777788888888776543

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.53  E-value=4.5e-13  Score=108.61  Aligned_cols=168  Identities=17%  Similarity=0.247  Sum_probs=118.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhcccCc----
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG--GKKLKLAIWDTAGQERFRTLTSSYYRGA----   86 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~----   86 (210)
                      ..-.|+|+|..++|||||+.+|.+.+.  ..++.+.++....+.-+  ....++.+|.+.|...+..+....+...    
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            457899999999999999999986543  23355555544433222  2235789999988777777777766543    


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhcc-------------------------------------------------
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-------------------------------------------------  117 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------------------------------------------------  117 (210)
                      -++|+|+|.+.|..+-.-...|+..++.+..                                                 
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            4789999999987655333335544433210                                                 


Q ss_pred             ------------CCCCcEEEEEeCCCCCC----Cc-------eecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028381          118 ------------NQDCIKLLVGNKVDKES----ER-------VVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       118 ------------~~~~p~ivv~nK~Dl~~----~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (210)
                                  +-++|++||.+|.|...    ..       ....+.++.++..+|+.++++|++...+++.++.+|.+
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h  261 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH  261 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence                        01479999999999621    11       12234477888899999999999999999999999999


Q ss_pred             HHHcCCCc
Q 028381          175 KILDTPSL  182 (210)
Q Consensus       175 ~~~~~~~~  182 (210)
                      ++...+-.
T Consensus       262 ~l~~~~f~  269 (472)
T PF05783_consen  262 RLYGFPFK  269 (472)
T ss_pred             HhccCCCC
Confidence            99776654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.53  E-value=5.1e-13  Score=101.01  Aligned_cols=168  Identities=19%  Similarity=0.240  Sum_probs=120.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECC--eEEEEEEEeCCCccccccchhhcccCc----
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGG--KKLKLAIWDTAGQERFRTLTSSYYRGA----   86 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~~~~~~~~~~----   86 (210)
                      ..-+|+++|+.++||||||.+|.+.+  .+.+..+.++....+.-+.  .-.++.+|-+-|+.....+....+...    
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            34689999999999999999999876  3334455445443333222  235788998888776666666655543    


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhcc-------------------------------------------------
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-------------------------------------------------  117 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------------------------------------------------  117 (210)
                      ..+|++.|.++++.+-...+.|...+.++..                                                 
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            5788999999997655444447776655422                                                 


Q ss_pred             -----------CCCCcEEEEEeCCCCC----CCce-------ecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHH
Q 028381          118 -----------NQDCIKLLVGNKVDKE----SERV-------VTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       118 -----------~~~~p~ivv~nK~Dl~----~~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (210)
                                 +-++|++||.+|+|..    .+..       .....++.||..+|...+++|+++..|++-+..+|.++
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence                       1367999999999982    2221       12334678888999999999999999999999999999


Q ss_pred             HHcCCCc
Q 028381          176 ILDTPSL  182 (210)
Q Consensus       176 ~~~~~~~  182 (210)
                      .+.-.-.
T Consensus       289 ~yG~~ft  295 (473)
T KOG3905|consen  289 SYGFPFT  295 (473)
T ss_pred             hcCcccC
Confidence            8765433

>PRK00007 elongation factor G; Reviewed

Probab=99.53  E-value=1.8e-13  Score=117.04  Aligned_cols=144  Identities=14%  Similarity=0.169  Sum_probs=92.5

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC---CC------------CCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTS--DNFEE---LS------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~--~~~~~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      .+...+|+|+|++++|||||+++|+.  +....   ..            ...+.+.......+......++++||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            45677999999999999999999973  21100   00            122334433333344456789999999988


Q ss_pred             ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-
Q 028381           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-  152 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-  152 (210)
                      .+.......++.+|++|+|+|+......+.... |.. +.    ..++|+++++||+|+....  ..+....+....+. 
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~~-~~----~~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~  158 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WRQ-AD----KYKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGAN  158 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HHH-HH----HcCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCC
Confidence            776666677888999999999987754443322 332 22    3467899999999987543  22222333333333 


Q ss_pred             ---eEEEEccCCC
Q 028381          153 ---LFIECSAKTR  162 (210)
Q Consensus       153 ---~~~~~Sa~~~  162 (210)
                         ..+++|+..+
T Consensus       159 ~~~~~ipisa~~~  171 (693)
T PRK00007        159 PVPIQLPIGAEDD  171 (693)
T ss_pred             eeeEEecCccCCc
Confidence               2566666655

>PRK12740 elongation factor G; Reviewed

Probab=99.53  E-value=1.5e-13  Score=117.63  Aligned_cols=108  Identities=19%  Similarity=0.255  Sum_probs=74.5

Q ss_pred             EcCCCCcHHHHHHHHhcCCCCC--------------CCC---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc
Q 028381           20 IGDSGVGKSSLLLSFTSDNFEE--------------LSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY   82 (210)
Q Consensus        20 ~G~~~~GKstli~~l~~~~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   82 (210)
                      +|++++|||||+++|+...-..              ...   ..+.+.......+....+.+++|||||+..+...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            5999999999999995432110              000   12223333333334456789999999998877777888


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      +..+|++++|+|++.......... |. .+.    ..++|+++|+||+|+.
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiv~NK~D~~  125 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETV-WR-QAE----KYGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHH-HH-HHH----HcCCCEEEEEECCCCC
Confidence            899999999999998766554322 32 222    2468999999999985

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.52  E-value=2.1e-13  Score=100.71  Aligned_cols=163  Identities=15%  Similarity=0.187  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------ch---h
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LT---S   80 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~---~   80 (210)
                      ++|+++|.+|+||||++|.+++........   ....+........++  ..+.++||||......        +.   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999887543331   222223333334555  5578899999432111        11   1


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-------HHHHHHHHHHhCCe
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-------KKEGINFAREYGCL  153 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~  153 (210)
                      ....+.+++++|+.+. +-+...... +......+....-..++||.|..|......+.       ......+....+-.
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~-l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREV-LELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHH-HHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHH-HHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            1245689999999998 433322221 22222222222334678888888764443321       12345666677878


Q ss_pred             EEEEccC------CCCCHHHHHHHHHHHHHcCCC
Q 028381          154 FIECSAK------TRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       154 ~~~~Sa~------~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      |..++.+      ....+.+++..+-+.+.++..
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g  190 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG  190 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence            8888777      335688999998888877763

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.52  E-value=2.8e-13  Score=101.92  Aligned_cols=125  Identities=19%  Similarity=0.238  Sum_probs=74.5

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc--c-c-------
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR--T-L-------   78 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~-~-------   78 (210)
                      ......++|+++|.+|+|||||+|+|++............+.....+........+.+|||||.....  . .       
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            45567899999999999999999999988764443322222222222222234678999999965442  1 0       


Q ss_pred             hhhccc--CccEEEEEEECCCcc-cHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCC
Q 028381           79 TSSYYR--GAQGIIMVYDVTRRD-TFTNLSDVWAKEIDL-YSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        79 ~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      ...++.  ..|++++|..++... ....  ..++..+.. +....-.++++|.||.|...+
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence            111222  568888887666432 2221  113333333 221222578999999998533

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.51  E-value=4e-13  Score=102.75  Aligned_cols=172  Identities=16%  Similarity=0.151  Sum_probs=95.9

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCc--eeeeEEEEEEECCeEEEEEEEeCCCccccccc-------hh
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTI--GVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-------TS   80 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~   80 (210)
                      .....++|+++|.+|+||||++|+|++..........  +.+........  ....+.+|||||.......       ..
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik  111 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIK  111 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence            3457899999999999999999999987653333322  22222222223  3467899999996543211       11


Q ss_pred             hcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCCceecHHH--------HHHHH--
Q 028381           81 SYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL-YSTNQDCIKLLVGNKVDKESERVVTKKE--------GINFA--  147 (210)
Q Consensus        81 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--------~~~~~--  147 (210)
                      .++  ...|+++||..++... +......++..+.. +....-.+.||+.|+.|...+.....++        .++..  
T Consensus       112 ~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~~~~~lq~~i~~  190 (313)
T TIGR00991       112 RFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSKRSEALLRVIHS  190 (313)
T ss_pred             HHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHhcHHHHHHHHHH
Confidence            111  2589999997655321 21111112232322 2222335789999999975433222211        11111  


Q ss_pred             -HH-h-------CCe--EEEEccCCCCC-------------HHHHHHHHHHHHHcCCCccc
Q 028381          148 -RE-Y-------GCL--FIECSAKTRVN-------------VQQCFEELVLKILDTPSLLA  184 (210)
Q Consensus       148 -~~-~-------~~~--~~~~Sa~~~~~-------------i~~~~~~l~~~~~~~~~~~~  184 (210)
                       .. .       ..|  ++|-|.....|             +..++..|.+.+....+.+.
T Consensus       191 ~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~~~~~~~  251 (313)
T TIGR00991       191 GAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISNGSKPIH  251 (313)
T ss_pred             HhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhCCCCCeE
Confidence             11 1       122  55555443322             78888888888877665543

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.50  E-value=2.9e-14  Score=122.30  Aligned_cols=119  Identities=18%  Similarity=0.201  Sum_probs=82.7

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcC---------------CCCCCCC----CceeeeEEEEEEECCeEEEEEEEeC
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSD---------------NFEELSP----TIGVDFKVKYVDVGGKKLKLAIWDT   69 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~---------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~   69 (210)
                      .+.+...||+++|+.++|||||+++|+..               ++.....    +.........+.+++..+.+++|||
T Consensus        14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDT   93 (720)
T TIGR00490        14 WKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDT   93 (720)
T ss_pred             hCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeC
Confidence            34456789999999999999999999742               1211100    2222222223345777899999999


Q ss_pred             CCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           70 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      ||+..+.......++.+|++++|+|+........... |.. .    ...+.|.++++||+|..
T Consensus        94 PG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~-~----~~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        94 PGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQ-A----LKENVKPVLFINKVDRL  151 (720)
T ss_pred             CCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHH-H----HHcCCCEEEEEEChhcc
Confidence            9999888777888999999999999987543332221 322 1    13456888999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.48  E-value=2.5e-12  Score=103.89  Aligned_cols=166  Identities=23%  Similarity=0.285  Sum_probs=119.2

Q ss_pred             cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028381            7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG   85 (210)
Q Consensus         7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (210)
                      .+......+++.++|+.++|||.+++.++++.+...+. +....+....+...+....+.+-|.+-. ...-+...- ..
T Consensus       418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~  495 (625)
T KOG1707|consen  418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA  495 (625)
T ss_pred             cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence            44566788999999999999999999999988876443 4444444444555566666777787743 212111111 67


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHhCCe-EEEEccCCCC
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFAREYGCL-FIECSAKTRV  163 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~~Sa~~~~  163 (210)
                      ||++.++||.+++.+|......+....    .....|+++|++|.|+.+... ...+. .+++..++++ .+.+|.+...
T Consensus       496 cDv~~~~YDsS~p~sf~~~a~v~~~~~----~~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~  570 (625)
T KOG1707|consen  496 CDVACLVYDSSNPRSFEYLAEVYNKYF----DLYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLS  570 (625)
T ss_pred             eeeEEEecccCCchHHHHHHHHHHHhh----hccCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCC
Confidence            999999999999999988766332222    236799999999999965543 33333 7889999987 7778888533


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 028381          164 NVQQCFEELVLKILDTP  180 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~  180 (210)
                      . .++|..|..+..-..
T Consensus       571 s-~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  571 S-NELFIKLATMAQYPH  586 (625)
T ss_pred             C-chHHHHHHHhhhCCC
Confidence            4 899999998876554

>cd00066 G-alpha G protein alpha subunit

Probab=99.48  E-value=1.1e-12  Score=102.44  Aligned_cols=119  Identities=19%  Similarity=0.188  Sum_probs=86.1

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028381           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (210)
                      ..+.+.+||++|+...+..|..++.+++++++|+|+++.          ..+......|...+.. ....++|+++++||
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~-~~~~~~pill~~NK  237 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS-RWFANTSIILFLNK  237 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC-ccccCCCEEEEccC
Confidence            456789999999999999999999999999999999974          3455555534444432 33467999999999


Q ss_pred             CCCCCC----------------ceecHHHHHHHHHH----------hCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          130 VDKESE----------------RVVTKKEGINFARE----------YGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       130 ~Dl~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      .|+-.+                ..-+.+.+..+...          ..+.+..++|.+..++..+|+.+.+.+++.
T Consensus       238 ~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         238 KDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             hHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            996211                01233444444432          123467789999999999999999988764

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.47  E-value=1.1e-13  Score=109.79  Aligned_cols=165  Identities=16%  Similarity=0.122  Sum_probs=110.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-----ccch----hhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-----RTLT----SSY   82 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~----~~~   82 (210)
                      ...-.++++|.|++|||||++.+...+. ++.+...++......+++....+++++||||.-..     ..+-    -+.
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            3456789999999999999999986654 23333333344444566777788899999993221     1111    111


Q ss_pred             ccCccEEEEEEECCCc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHH--HHHHHH-hCCeEEEE
Q 028381           83 YRGAQGIIMVYDVTRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEG--INFARE-YGCLFIEC  157 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~--~~~~~~-~~~~~~~~  157 (210)
                      ..--.+|+|++|++..  .|...-.. ++..++  ....+.|.|+|.||+|+...+.++.+..  .+.... -+++++++
T Consensus       245 AHLraaVLYfmDLSe~CGySva~Qvk-LfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHHHH-HHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            1223688999999864  34443333 333333  2356789999999999987777765542  222233 34889999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCC
Q 028381          158 SAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      |+.+.+|+.++....+++++..+
T Consensus       322 S~~~eegVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALLAAR  344 (620)
T ss_pred             cccchhceeeHHHHHHHHHHHHH
Confidence            99999999999998888887665

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.46  E-value=8.6e-13  Score=100.79  Aligned_cols=152  Identities=22%  Similarity=0.193  Sum_probs=107.5

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCC-------------C-------------------CCCCCceeeeEEEEEEEC
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-------------E-------------------ELSPTIGVDFKVKYVDVG   58 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~-------------~-------------------~~~~~~~~~~~~~~~~~~   58 (210)
                      ....+|++.+|...=||||||-||+...-             +                   +.....|.|+......+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            45679999999999999999999974310             0                   001134556666666667


Q ss_pred             CeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028381           59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV  138 (210)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  138 (210)
                      ..+.++.+-|||||++|......-...||+.|+++|+...-.-+.-+.-++..+.     .=..+++++||+||.+..+.
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e~  157 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSEE  157 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCHH
Confidence            7788899999999999998888888899999999999765433322221221111     11467899999999776555


Q ss_pred             cHHHH----HHHHHHhCC---eEEEEccCCCCCHHH
Q 028381          139 TKKEG----INFAREYGC---LFIECSAKTRVNVQQ  167 (210)
Q Consensus       139 ~~~~~----~~~~~~~~~---~~~~~Sa~~~~~i~~  167 (210)
                      ..+++    ..++..+++   .++++||..|+|+..
T Consensus       158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            44443    455566665   499999999999754

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=3.9e-12  Score=97.08  Aligned_cols=165  Identities=19%  Similarity=0.190  Sum_probs=98.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC----CCC--CCCCceee----eEEEEEE-----ECCeEEEEEEEeCCCccccc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDN----FEE--LSPTIGVD----FKVKYVD-----VGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~----~~~--~~~~~~~~----~~~~~~~-----~~~~~~~~~l~D~~g~~~~~   76 (210)
                      ..++++.++|+..||||||.++|..-.    |..  .+.+-+.+    +....+.     -.++..++.++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            345999999999999999999996432    111  11112221    1111111     14556789999999996655


Q ss_pred             cchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce---ecHHHHHHHH---HHh
Q 028381           77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV---VTKKEGINFA---REY  150 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~---~~~  150 (210)
                      ........-.|..++|+|+.....-+..+-..+-.+.      -...|||+||+|...+..   ...+......   ...
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t  158 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST  158 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence            4444444455889999999887655555442322222      134678889988743321   1112222222   222


Q ss_pred             ----CCeEEEEccCCC----CCHHHHHHHHHHHHHcCCCc
Q 028381          151 ----GCLFIECSAKTR----VNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       151 ----~~~~~~~Sa~~~----~~i~~~~~~l~~~~~~~~~~  182 (210)
                          +.|++++||+.|    .++.++...+-.++.+..+.
T Consensus       159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd  198 (522)
T KOG0461|consen  159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD  198 (522)
T ss_pred             CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence                368999999999    56666666666666554443

>PRK13768 GTPase; Provisional

Probab=99.45  E-value=8.1e-13  Score=100.04  Aligned_cols=113  Identities=19%  Similarity=0.143  Sum_probs=71.2

Q ss_pred             EEEEEeCCCcccc---ccchhhccc---C--ccEEEEEEECCCcccHHHHHHH-HHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           63 KLAIWDTAGQERF---RTLTSSYYR---G--AQGIIMVYDVTRRDTFTNLSDV-WAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        63 ~~~l~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      .+.+||+||..+.   ...+..+++   .  .+++++|+|+............ |+......  ..++|+++|+||+|+.
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~  175 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLL  175 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhc
Confidence            5889999997553   233333322   2  8999999999775544333221 22222211  2468999999999986


Q ss_pred             CCceecH--HHHH------------------------HHHHHhC--CeEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          134 SERVVTK--KEGI------------------------NFAREYG--CLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       134 ~~~~~~~--~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      .......  ....                        ......+  .+++++|++++.|++++++++.+.+.
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            5432211  0000                        1122233  47899999999999999999988773

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.45  E-value=1.4e-13  Score=101.85  Aligned_cols=174  Identities=16%  Similarity=0.156  Sum_probs=100.4

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceee----eEEEEEE---------------------------
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVD----FKVKYVD---------------------------   56 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~----~~~~~~~---------------------------   56 (210)
                      ...+..+.-|+++|..|||||||++||...-.....+....+    +....+.                           
T Consensus        13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~   92 (366)
T KOG1532|consen   13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV   92 (366)
T ss_pred             cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence            445678899999999999999999999643221111100000    0000000                           


Q ss_pred             ------------------ECCeEEEEEEEeCCCccc-ccc-----chhhcc--cCccEEEEEEECC---CcccHHHHHHH
Q 028381           57 ------------------VGGKKLKLAIWDTAGQER-FRT-----LTSSYY--RGAQGIIMVYDVT---RRDTFTNLSDV  107 (210)
Q Consensus        57 ------------------~~~~~~~~~l~D~~g~~~-~~~-----~~~~~~--~~~d~~i~v~d~~---~~~s~~~~~~~  107 (210)
                                        -....+...++||||+-+ +..     ++...+  ...-++++|+|..   ++.+|-.... 
T Consensus        93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMl-  171 (366)
T KOG1532|consen   93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNML-  171 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHH-
Confidence                              011234678999999643 221     111111  1346788999954   4455554443 


Q ss_pred             HHHHHhhhccCCCCcEEEEEeCCCCCCCc-----eecHH---HHHH-------------HH-----HHhCCeEEEEccCC
Q 028381          108 WAKEIDLYSTNQDCIKLLVGNKVDKESER-----VVTKK---EGIN-------------FA-----REYGCLFIECSAKT  161 (210)
Q Consensus       108 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~---~~~~-------------~~-----~~~~~~~~~~Sa~~  161 (210)
                      +.--+.   -+...|+|++.||.|+.+..     .-+.+   ++..             .+     .-.++..+-+|+.+
T Consensus       172 YAcSil---yktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~t  248 (366)
T KOG1532|consen  172 YACSIL---YKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVT  248 (366)
T ss_pred             HHHHHH---HhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEeccc
Confidence            222222   25678999999999986431     00111   1110             00     01246689999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcccc
Q 028381          162 RVNVQQCFEELVLKILDTPSLLAE  185 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~~~~~~~  185 (210)
                      |.|.+++|..+...+-+.......
T Consensus       249 G~G~ddf~~av~~~vdEy~~~ykp  272 (366)
T KOG1532|consen  249 GEGFDDFFTAVDESVDEYEEEYKP  272 (366)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999998877665555443

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.45  E-value=2e-12  Score=113.08  Aligned_cols=142  Identities=16%  Similarity=0.174  Sum_probs=89.5

Q ss_pred             cHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCe-----------E-----EEEEEEeCCCccccccchhhcccCccE
Q 028381           26 GKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGK-----------K-----LKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        26 GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~-----~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +||||+.++.+........ ..........+..+..           .     ..+.||||||++.+..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            4999999998766543222 2222222222222210           0     138999999999988877777888999


Q ss_pred             EEEEEECCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec------------HHHHH-H-------
Q 028381           89 IIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT------------KKEGI-N-------  145 (210)
Q Consensus        89 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------------~~~~~-~-------  145 (210)
                      +++|+|+++.   .+++.+     ..+.    ..++|+++|+||+|+.......            .+... +       
T Consensus       553 vlLVVDa~~Gi~~qT~e~I-----~~lk----~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~  623 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAI-----NILR----QYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE  623 (1049)
T ss_pred             EEEEEECcccCCHhHHHHH-----HHHH----HcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence            9999999874   333322     2222    2357999999999985332210            01100 0       


Q ss_pred             H---HHH-------------h--CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          146 F---ARE-------------Y--GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       146 ~---~~~-------------~--~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      +   ...             +  .++++++||++|.|+++++.++....
T Consensus       624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence            0   011             1  35799999999999999998876543

>PTZ00258 GTP-binding protein; Provisional

Probab=99.44  E-value=3.4e-12  Score=101.18  Aligned_cols=86  Identities=21%  Similarity=0.149  Sum_probs=55.7

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEE--EEECCe---------------EEEEEEEeCCCc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKY--VDVGGK---------------KLKLAIWDTAGQ   72 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------~~~~~l~D~~g~   72 (210)
                      .....++|+++|.||||||||+|+|++... .....+++|.....  +.+...               ..++.++|+||.
T Consensus        17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL   95 (390)
T PTZ00258         17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL   95 (390)
T ss_pred             cCCCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence            346778999999999999999999987653 32222333322221  222211               235899999994


Q ss_pred             ccc-------ccchhhcccCccEEEEEEECC
Q 028381           73 ERF-------RTLTSSYYRGAQGIIMVYDVT   96 (210)
Q Consensus        73 ~~~-------~~~~~~~~~~~d~~i~v~d~~   96 (210)
                      ..-       .......++.+|++++|+|..
T Consensus        96 v~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         96 VKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            321       112233567899999999974

>TIGR00101 ureG urease accessory protein UreG

Probab=99.44  E-value=2.5e-12  Score=93.85  Aligned_cols=103  Identities=21%  Similarity=0.130  Sum_probs=64.8

Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK  141 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  141 (210)
                      ....++++.|..........   -+|.+|.|+|+.+..+....   +...+.       ..-++++||+|+.+......+
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~~---~~~qi~-------~ad~~~~~k~d~~~~~~~~~~  158 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPRK---GGPGIT-------RSDLLVINKIDLAPMVGADLG  158 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhhh---hHhHhh-------hccEEEEEhhhccccccccHH
Confidence            45567788774322222221   25889999999976653221   111111       123899999999743222333


Q ss_pred             HHHHHHHH--hCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          142 EGINFARE--YGCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       142 ~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ...+..+.  .+.+++++||++|.|++++|+++.+.++
T Consensus       159 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       159 VMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            33344443  4578999999999999999999997653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.42  E-value=4.2e-12  Score=100.26  Aligned_cols=162  Identities=18%  Similarity=0.234  Sum_probs=113.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC--CCCC-------------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDN--FEEL-------------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      ..-+|+|+.+..-|||||+..|+...  |...             ...-|.|+-...-.+.+....++++|||||..|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            34589999999999999999997432  2111             11345555555556667778999999999999999


Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHh------
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFAREY------  150 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~------  150 (210)
                      .....+.-+|++++++|+.+..- ...+..+..     +...+.+-|||+||+|.+.++. .-..++..++.++      
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpM-PQTrFVlkK-----Al~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQ  157 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPM-PQTRFVLKK-----ALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQ  157 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCC-CchhhhHHH-----HHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhh
Confidence            99999999999999999998532 222211222     2234455589999999987653 2334455555544      


Q ss_pred             -CCeEEEEccCCC----------CCHHHHHHHHHHHHHcCC
Q 028381          151 -GCLFIECSAKTR----------VNVQQCFEELVLKILDTP  180 (210)
Q Consensus       151 -~~~~~~~Sa~~~----------~~i~~~~~~l~~~~~~~~  180 (210)
                       ++|+++.|++.|          .++.-+|+.|++.+....
T Consensus       158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence             568999999876          357778888888774443

>smart00275 G_alpha G protein alpha subunit

Probab=99.42  E-value=7e-12  Score=98.74  Aligned_cols=118  Identities=16%  Similarity=0.183  Sum_probs=83.9

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028381           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  130 (210)
                      ...+.+||.+|+...+..|..++.+++++++|+|+++.          ..+......|...+.. ..-.++|++|++||.
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~-~~~~~~piil~~NK~  261 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS-RWFANTSIILFLNKI  261 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC-ccccCCcEEEEEecH
Confidence            45688999999999999999999999999999999973          3455555534444432 334679999999999


Q ss_pred             CCCCC--------------c-eecHHHHHHHHHH-----------hCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          131 DKESE--------------R-VVTKKEGINFARE-----------YGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       131 Dl~~~--------------~-~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      |+-.+              . .-+.+.+..+...           ..+.++.++|.+..++..+|+.+.+.+++.
T Consensus       262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            97211              0 0123333333321           113367888999999999999998888654

Subunit of G proteins that contains the guanine nucleotide binding site

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.40  E-value=1.1e-12  Score=114.31  Aligned_cols=119  Identities=17%  Similarity=0.204  Sum_probs=82.6

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCC------------CCCC---CceeeeEE--EEEEE--------------
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------ELSP---TIGVDFKV--KYVDV--------------   57 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~------------~~~~---~~~~~~~~--~~~~~--------------   57 (210)
                      .+.+...+|+|+|+.++|||||+.+|+...-.            ...+   ..+.++..  ..+..              
T Consensus        14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~   93 (843)
T PLN00116         14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER   93 (843)
T ss_pred             hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence            45667789999999999999999999754311            0000   11222221  11111              


Q ss_pred             CCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           58 GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      .+..+.++++||||+..+.......++.+|++|+|+|+...-......- |....     ..++|+++++||+|+.
T Consensus        94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~-~~~~~-----~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL-----GERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHH-HHHHH-----HCCCCEEEEEECCccc
Confidence            2236788999999999998888888899999999999998755443322 43322     3568999999999986

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.39  E-value=3.6e-12  Score=96.04  Aligned_cols=96  Identities=20%  Similarity=0.243  Sum_probs=75.6

Q ss_pred             cccccchhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC
Q 028381           73 ERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG  151 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  151 (210)
                      +.+..+.+.+++++|++++|+|+.++. ++..+.. |+..+..    .++|+++|+||+||........+.+..+ ...+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g   97 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIG   97 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCC
Confidence            455667778899999999999999887 7888776 7765542    5789999999999965544443444443 4578


Q ss_pred             CeEEEEccCCCCCHHHHHHHHHH
Q 028381          152 CLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       152 ~~~~~~Sa~~~~~i~~~~~~l~~  174 (210)
                      .+++++||+++.|++++|..+..
T Consensus        98 ~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        98 YQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             CeEEEEecCCchhHHHHHhhhcC
Confidence            89999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PTZ00416 elongation factor 2; Provisional

Probab=99.39  E-value=1.6e-12  Score=113.18  Aligned_cols=117  Identities=20%  Similarity=0.185  Sum_probs=79.4

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---------------CceeeeEE--EEEEEC--------CeEEEEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---------------TIGVDFKV--KYVDVG--------GKKLKLA   65 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~--~~~~~~--------~~~~~~~   65 (210)
                      .+...+|+++|+.++|||||+++|+...-.....               ..+.+...  ..+...        +....++
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            4556699999999999999999998532110000               11122211  112222        2257799


Q ss_pred             EEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      ++||||+..+.......++.+|++|+|+|+...-..... ..|.. +.    ..++|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~-~~----~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQ-AL----QERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHH-HH----HcCCCEEEEEEChhhh
Confidence            999999998888778888999999999999986543332 21432 22    3458999999999985

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.39  E-value=4e-12  Score=109.51  Aligned_cols=119  Identities=19%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC------------CC---CceeeeE----EEEEEECCeEEEEEEEeC
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL------------SP---TIGVDFK----VKYVDVGGKKLKLAIWDT   69 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~------------~~---~~~~~~~----~~~~~~~~~~~~~~l~D~   69 (210)
                      .+.+...+|+++|+.++|||||+.+|+...-...            .+   .-+.+..    ...+..++..+.++++||
T Consensus        15 ~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDt   94 (731)
T PRK07560         15 KNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDT   94 (731)
T ss_pred             hchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcC
Confidence            3455677899999999999999999975321100            00   0111111    112233556788999999


Q ss_pred             CCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           70 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      ||+..+.......++.+|++|+|+|+......... ..|.....     .+.|.++++||+|+.
T Consensus        95 PG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~-----~~~~~iv~iNK~D~~  152 (731)
T PRK07560         95 PGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALR-----ERVKPVLFINKVDRL  152 (731)
T ss_pred             CCccChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHH-----cCCCeEEEEECchhh
Confidence            99998888778888999999999998876443322 22433222     245779999999975

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.38  E-value=1.7e-11  Score=96.46  Aligned_cols=157  Identities=15%  Similarity=0.180  Sum_probs=97.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC----CCC-----------CCCCCce---eeeE-------EEEEE-ECCeEEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD----NFE-----------ELSPTIG---VDFK-------VKYVD-VGGKKLKLA   65 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~----~~~-----------~~~~~~~---~~~~-------~~~~~-~~~~~~~~~   65 (210)
                      .-.+-|.|+|+.++|||||||+|.+.    ...           -.+...|   +|..       ...+. .++....+.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            34688999999999999999999876    332           2222333   2221       22222 255668899


Q ss_pred             EEeCCCccccc-------cc----------------------hhhccc-CccEEEEEE-ECC----CcccHHHHHHHHHH
Q 028381           66 IWDTAGQERFR-------TL----------------------TSSYYR-GAQGIIMVY-DVT----RRDTFTNLSDVWAK  110 (210)
Q Consensus        66 l~D~~g~~~~~-------~~----------------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~  110 (210)
                      ++||+|-..-.       ..                      .+..+. .+|+.++|. |.+    .++.+......+..
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            99999821100       01                      233455 789999888 664    12334455444666


Q ss_pred             HHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC--CCHHHHHHHHHH
Q 028381          111 EIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR--VNVQQCFEELVL  174 (210)
Q Consensus       111 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~~~~~l~~  174 (210)
                      .++    ..++|++++.|+.|.....  ..+....+...++++++.+|+..-  .++..++..++-
T Consensus       175 eLk----~~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       175 ELK----ELNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY  234 (492)
T ss_pred             HHH----hcCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence            665    4679999999999943222  333445666778898887876543  355555555443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.37  E-value=3.5e-12  Score=86.08  Aligned_cols=115  Identities=30%  Similarity=0.381  Sum_probs=79.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|+.|+|||+|+.++....+...+ +. .+..                       +........+.++.+++|++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~-~~-~t~~-----------------------~~~~~~~~~~s~~~~~~v~~   55 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVP-TV-FTIG-----------------------IDVYDPTSYESFDVVLQCWR   55 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccC-ce-ehhh-----------------------hhhccccccCCCCEEEEEEE
Confidence            58999999999999999999877764322 11 1111                       22233445677899999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      ..+..+++.+   |...+.. ..+.+.|.++++||.|+.....+..++.        ..++++|++++.|+.
T Consensus        56 ~~~~~s~~~~---~~~~i~~-~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       56 VDDRDSADNK---NVPEVLV-GNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             ccCHHHHHHH---hHHHHHh-cCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            9999988765   5555544 3456789999999999854333333333        334678888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.36  E-value=1.2e-11  Score=91.06  Aligned_cols=152  Identities=16%  Similarity=0.125  Sum_probs=84.9

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCC------------CCCCCcee-eeEEEEEEECC------------------
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------ELSPTIGV-DFKVKYVDVGG------------------   59 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~------------~~~~~~~~-~~~~~~~~~~~------------------   59 (210)
                      ......|.|+|+.|+|||||++++......            ....+... ......+.+.+                  
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~   98 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL   98 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence            345788999999999999999998643100            00000000 00000011100                  


Q ss_pred             --eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce
Q 028381           60 --KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV  137 (210)
Q Consensus        60 --~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (210)
                        ....+.++|+.|.-... .  .+....+..+.|+|+.+......  . .   ..    ....|.++++||+|+.....
T Consensus        99 ~~~~~d~IiIEt~G~l~~~-~--~~~~~~~~~i~Vvd~~~~d~~~~--~-~---~~----~~~~a~iiv~NK~Dl~~~~~  165 (207)
T TIGR00073        99 PLDDIDLLFIENVGNLVCP-A--DFDLGEHMRVVLLSVTEGDDKPL--K-Y---PG----MFKEADLIVINKADLAEAVG  165 (207)
T ss_pred             ccCCCCEEEEecCCCcCCC-c--ccccccCeEEEEEecCcccchhh--h-h---Hh----HHhhCCEEEEEHHHccccch
Confidence              12356677777721111 1  11122455567777775443111  1 1   11    12357799999999965433


Q ss_pred             ecHHHHHHHHHHh--CCeEEEEccCCCCCHHHHHHHHHHH
Q 028381          138 VTKKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       138 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (210)
                      ...+.........  ..+++++||+++.|++++|+++.+.
T Consensus       166 ~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       166 FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            2333344444443  3789999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.35  E-value=9.4e-12  Score=96.96  Aligned_cols=104  Identities=14%  Similarity=0.118  Sum_probs=66.8

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--
Q 028381           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--  138 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--  138 (210)
                      .+.+.|+||+|.......   ....+|.++++.+....+.......    .+..      ..-++|+||+|+......  
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E------~aDIiVVNKaDl~~~~~a~~  214 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK----GIME------LADLIVINKADGDNKTAARR  214 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh----hhhh------hhheEEeehhcccchhHHHH
Confidence            467899999997643322   4567999999987555554443321    1111      123899999998643311  


Q ss_pred             cHHHHHHHHHH-------hCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          139 TKKEGINFARE-------YGCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       139 ~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ...+.......       +..+++.+||+++.|++++++.+.+.+.
T Consensus       215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            11222222221       2257999999999999999999998753

>cd01882 BMS1 Bms1

Probab=99.34  E-value=4e-11  Score=89.36  Aligned_cols=139  Identities=19%  Similarity=0.217  Sum_probs=83.3

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ......|+++|++|+|||||++.+.+..... .....+. +   .+ ......++.++|+||..   ......+..+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH---HHHHHHHHhcCEE
Confidence            3456789999999999999999998642211 1112221 1   11 11245678899999853   2223346789999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCCCCce-e--cHHHHHH-HHHH--hCCeEEEEccCCC
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVDKESERV-V--TKKEGIN-FARE--YGCLFIECSAKTR  162 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~--~~~~~~~-~~~~--~~~~~~~~Sa~~~  162 (210)
                      ++|+|++........ . +...+..    .+.|. ++|+||.|+..... .  ..+.++. +...  .+.+++.+||++.
T Consensus       108 llviDa~~~~~~~~~-~-i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~  181 (225)
T cd01882         108 LLLIDASFGFEMETF-E-FLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH  181 (225)
T ss_pred             EEEEecCcCCCHHHH-H-HHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence            999999875543322 2 3333332    34674 45999999853321 1  1122222 2221  2467999999988


Q ss_pred             C
Q 028381          163 V  163 (210)
Q Consensus       163 ~  163 (210)
                      -
T Consensus       182 ~  182 (225)
T cd01882         182 G  182 (225)
T ss_pred             C
Confidence            4

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=1.8e-11  Score=99.02  Aligned_cols=158  Identities=21%  Similarity=0.175  Sum_probs=104.9

Q ss_pred             cccccceeeEEEEEcCCCCcHHHHHHHHhcC--------------------CCC----------CCCCCceeeeEEEEEE
Q 028381            7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSD--------------------NFE----------ELSPTIGVDFKVKYVD   56 (210)
Q Consensus         7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~--------------------~~~----------~~~~~~~~~~~~~~~~   56 (210)
                      .+......+.++++|+..+|||||+.+++..                    +.+          ......|.+.......
T Consensus       170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~  249 (603)
T KOG0458|consen  170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW  249 (603)
T ss_pred             cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence            3444557899999999999999999988532                    110          1111345555566666


Q ss_pred             ECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCccc---HH---HHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028381           57 VGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        57 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~  130 (210)
                      ++.....++|+|+||+..|......-...+|+.++|+|++-.+-   |+   ..++ ....++. ..  -.-++|++||+
T Consensus       250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~-Lg--i~qlivaiNKm  325 (603)
T KOG0458|consen  250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRS-LG--ISQLIVAINKM  325 (603)
T ss_pred             EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHH-cC--cceEEEEeecc
Confidence            67778899999999999999888888899999999999886421   11   1122 2222222 11  23578889999


Q ss_pred             CCCCCceecHHH----HHHHH-HHhC-----CeEEEEccCCCCCHHHH
Q 028381          131 DKESERVVTKKE----GINFA-REYG-----CLFIECSAKTRVNVQQC  168 (210)
Q Consensus       131 Dl~~~~~~~~~~----~~~~~-~~~~-----~~~~~~Sa~~~~~i~~~  168 (210)
                      |+.+=..-..++    +..+. ...|     +.|++||+..|+|+-..
T Consensus       326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            995433222222    33344 2333     46999999999997654

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.32  E-value=4.6e-11  Score=93.83  Aligned_cols=81  Identities=21%  Similarity=0.163  Sum_probs=52.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeE---------------EEEEEEeCCCccccc-
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKK---------------LKLAIWDTAGQERFR-   76 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------~~~~l~D~~g~~~~~-   76 (210)
                      ++|+++|.|+||||||+++|++... .....+++|...  -.+.+...+               ..+.++|+||...-. 
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~   81 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   81 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence            6899999999999999999998773 322222222211  122222211               258999999953211 


Q ss_pred             ---c---chhhcccCccEEEEEEECC
Q 028381           77 ---T---LTSSYYRGAQGIIMVYDVT   96 (210)
Q Consensus        77 ---~---~~~~~~~~~d~~i~v~d~~   96 (210)
                         .   .....++.+|++++|+|+.
T Consensus        82 ~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         82 KGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1   2223467899999999984

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.31  E-value=2.7e-12  Score=96.04  Aligned_cols=113  Identities=18%  Similarity=0.191  Sum_probs=57.7

Q ss_pred             EEEEEeCCCccccccchhhcc--------cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           63 KLAIWDTAGQERFRTLTSSYY--------RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      .+.++||||+.++...|...-        ...-++++++|+....+-......++..... ....+.|.|.|.||+|+..
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~  170 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLS  170 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCccc
Confidence            688999999887665544432        3345888999977544322211112111111 1134689999999999976


Q ss_pred             Cce---e----------------cHHHHHHHHH---HhC-C-eEEEEccCCCCCHHHHHHHHHHHH
Q 028381          135 ERV---V----------------TKKEGINFAR---EYG-C-LFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       135 ~~~---~----------------~~~~~~~~~~---~~~-~-~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      ...   .                .......++.   ..+ + .++++|+.+++|+++++..+-+++
T Consensus       171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            320   0                0011111111   112 3 699999999999999998887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.28  E-value=1.7e-11  Score=98.50  Aligned_cols=172  Identities=23%  Similarity=0.356  Sum_probs=130.8

Q ss_pred             CCCCcccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028381            1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus         1 ~~~~~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      ++|+++.-...-..+|+.|+|..++|||+|+++++.+.|.+...+.+.. +...+.+++....+.+.|.+|...     .
T Consensus        17 vnsqewtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~-~kkE~vv~gqs~lLlirdeg~~~~-----a   90 (749)
T KOG0705|consen   17 VNSQEWTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGR-FKKEVVVDGQSHLLLIRDEGGHPD-----A   90 (749)
T ss_pred             ccccceeeecccchhheeeeecccCCceeeeeeeccceeccccCCcCcc-ceeeEEeeccceEeeeecccCCch-----h
Confidence            4566776666778899999999999999999999999987655544444 456677888888888899888322     3


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC--CCCceecHHHHHHHHHHh-CCeEEEE
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK--ESERVVTKKEGINFAREY-GCLFIEC  157 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl--~~~~~~~~~~~~~~~~~~-~~~~~~~  157 (210)
                      .|...+|++|+||...+..+|+.+.. +...+..+.....+|+++++++.=.  ...+.+.......++..+ .+.+|++
T Consensus        91 Qft~wvdavIfvf~~~d~~s~q~v~~-l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et  169 (749)
T KOG0705|consen   91 QFCQWVDAVVFVFSVEDEQSFQAVQA-LAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYET  169 (749)
T ss_pred             hhhhhccceEEEEEeccccCHHHHHH-HHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeec
Confidence            44567999999999999999999987 4444444455677898888877443  334555555555555544 5779999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcC
Q 028381          158 SAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      .+..|.++...|..+...+...
T Consensus       170 ~atyGlnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  170 CATYGLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             chhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999877655

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.25  E-value=6.1e-11  Score=93.22  Aligned_cols=161  Identities=19%  Similarity=0.175  Sum_probs=81.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----hhhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF--EELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-----TSSY   82 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----~~~~   82 (210)
                      ..+++|+|+|.+|+|||||||.|.|-..  ....+  ...++.....+... .--.+.+||+||..-..-.     -..-
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            4678999999999999999999976432  22222  22333333333322 1224899999995322211     1223


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC-------CCceecHH----HHHHHHH---
Q 028381           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE-------SERVVTKK----EGINFAR---  148 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~----~~~~~~~---  148 (210)
                      +...|.+|++.+..    |....-.+...+..    .++|+.+|-+|.|..       .++....+    ++++.+.   
T Consensus       112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  112 FYRYDFFIIISSER----FTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL  183 (376)
T ss_dssp             GGG-SEEEEEESSS------HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCCC----CchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence            56779888877632    33332224444443    568999999999961       12222222    2333322   


Q ss_pred             -HhCC---eEEEEccCCCC--CHHHHHHHHHHHHHcCCC
Q 028381          149 -EYGC---LFIECSAKTRV--NVQQCFEELVLKILDTPS  181 (210)
Q Consensus       149 -~~~~---~~~~~Sa~~~~--~i~~~~~~l~~~~~~~~~  181 (210)
                       +.++   ++|-+|+.+-.  ++..+.+.+.+.+...+.
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence             2243   38888888654  577777777776655443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=3.4e-11  Score=94.58  Aligned_cols=138  Identities=18%  Similarity=0.167  Sum_probs=95.6

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhc--CC--------------C-----CCCCCCceeeeEEEEEEECCeEEEEEEE
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTS--DN--------------F-----EELSPTIGVDFKVKYVDVGGKKLKLAIW   67 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~--~~--------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~   67 (210)
                      .+..+.-..+|+-+|.+|||||-..|+.  +-              +     ..-...-|..+....+.+++....++|.
T Consensus         7 ~Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLL   86 (528)
T COG4108           7 QEVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLL   86 (528)
T ss_pred             HHHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEecc
Confidence            4456677889999999999999998751  10              0     0001122444555556677778889999


Q ss_pred             eCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q 028381           68 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA  147 (210)
Q Consensus        68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  147 (210)
                      |||||+.+..-....+..+|..|+|+|+...-.-...+  +....+    -.++||+=++||.|.+...  ..+...++.
T Consensus        87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K--LfeVcr----lR~iPI~TFiNKlDR~~rd--P~ELLdEiE  158 (528)
T COG4108          87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK--LFEVCR----LRDIPIFTFINKLDREGRD--PLELLDEIE  158 (528)
T ss_pred             CCCCccccchhHHHHHHhhheeeEEEecccCccHHHHH--HHHHHh----hcCCceEEEeeccccccCC--hHHHHHHHH
Confidence            99999999998888899999999999999865443332  333333    4689999999999976443  233344444


Q ss_pred             HHhCCeE
Q 028381          148 REYGCLF  154 (210)
Q Consensus       148 ~~~~~~~  154 (210)
                      ..+++..
T Consensus       159 ~~L~i~~  165 (528)
T COG4108         159 EELGIQC  165 (528)
T ss_pred             HHhCcce
Confidence            5555443

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.23  E-value=1.8e-10  Score=88.35  Aligned_cols=142  Identities=17%  Similarity=0.253  Sum_probs=77.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------CCceeeeEEEEEEECCeEEEEEEEeCCCccc-------
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------   74 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------   74 (210)
                      -.++|+|+|.+|+|||||||.|++.......           .+.........+.-++..+.+.++||||...       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4699999999999999999999976543221           1222333334445577889999999999211       


Q ss_pred             -----------cccch-------hhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           75 -----------FRTLT-------SSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        75 -----------~~~~~-------~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                                 +....       +..+  ..+|+++|+++++... +..+.-.++..+     ...+++|-|+.|.|...
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L-----s~~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL-----SKRVNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH-----TTTSEEEEEESTGGGS-
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh-----cccccEEeEEecccccC
Confidence                       00000       0001  2568999999987532 122211133333     34578999999999854


Q ss_pred             Ccee--cHHHHHHHHHHhCCeEEEEccC
Q 028381          135 ERVV--TKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~  160 (210)
                      ..++  ..+.+.......++.++....-
T Consensus       157 ~~el~~~k~~i~~~l~~~~I~~f~f~~~  184 (281)
T PF00735_consen  157 PEELQAFKQRIREDLEENNIKIFDFPED  184 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--S------
T ss_pred             HHHHHHHHHHHHHHHHHcCceeeccccc
Confidence            3322  2344555566677776654433

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=9.1e-11  Score=97.35  Aligned_cols=158  Identities=21%  Similarity=0.158  Sum_probs=101.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCC----CceeeeEEEE--------EEEC----CeEEEEEEEeCCCccc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSP----TIGVDFKVKY--------VDVG----GKKLKLAIWDTAGQER   74 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~----~~~~~~~~~~--------~~~~----~~~~~~~l~D~~g~~~   74 (210)
                      -+..-|||+|+..+|||-|+..+-+..... .+.    .+|.++....        +.-+    ..--.+.++||||++.
T Consensus       473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs  552 (1064)
T KOG1144|consen  473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES  552 (1064)
T ss_pred             cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence            345668999999999999999887543211 111    2233332111        0000    0112467889999999


Q ss_pred             cccchhhcccCccEEEEEEECCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc---------------
Q 028381           75 FRTLTSSYYRGAQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER---------------  136 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---------------  136 (210)
                      |..+.......||.+|+|+|+...   .+.+.+..     ++    ..+.|+||+.||+|..-.+               
T Consensus       553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~l-----LR----~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ  623 (1064)
T KOG1144|consen  553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL-----LR----MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQ  623 (1064)
T ss_pred             hhhhhhccccccceEEEEeehhccCCcchhHHHHH-----HH----hcCCCeEEeehhhhhhcccccCCCchHHHHHHHh
Confidence            999999999999999999999875   34443322     22    4578999999999973111               


Q ss_pred             --eecHH------HHHHHHHHh-------------C--CeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          137 --VVTKK------EGINFAREY-------------G--CLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       137 --~~~~~------~~~~~~~~~-------------~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                        .+..+      .+.-.+...             +  +.++++||..|+||.+++-+|++....
T Consensus       624 ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk  688 (1064)
T KOG1144|consen  624 KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK  688 (1064)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence              00000      011111111             1  347999999999999999999987644

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.22  E-value=8e-11  Score=91.47  Aligned_cols=103  Identities=16%  Similarity=0.112  Sum_probs=63.3

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028381           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK  140 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  140 (210)
                      .+.+.|+||+|.....   ...+..+|.++++......   +.+.. +...+      .++|.++|+||+|+........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~-~~~~l------~~~~~ivv~NK~Dl~~~~~~~~  192 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQG-IKAGL------MEIADIYVVNKADGEGATNVTI  192 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHH-HHHHH------hhhccEEEEEcccccchhHHHH
Confidence            4678899999854222   2345667888888544433   33322 22211      2467799999999965432110


Q ss_pred             --H----HHHHHHH---HhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          141 --K----EGINFAR---EYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       141 --~----~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                        .    ....+..   .+..+++.+||+++.|++++++++.+.+
T Consensus       193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence              0    0011111   1234689999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.21  E-value=8e-11  Score=83.85  Aligned_cols=63  Identities=24%  Similarity=0.308  Sum_probs=42.6

Q ss_pred             EEEEEeCCCccc----cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028381           63 KLAIWDTAGQER----FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        63 ~~~l~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  130 (210)
                      .+.|+|+||...    ....+..++..+|++++|.+++...+...... +......    ....+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~----~~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP----DKSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT----TCSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC----CCCeEEEEEcCC
Confidence            478999999543    22456677899999999999998666554433 4444432    333488888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.21  E-value=3.3e-10  Score=88.02  Aligned_cols=124  Identities=20%  Similarity=0.182  Sum_probs=84.9

Q ss_pred             EEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCccc----------HHHHHHHHHHHHhhhccCCCCcEE
Q 028381           55 VDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT----------FTNLSDVWAKEIDLYSTNQDCIKL  124 (210)
Q Consensus        55 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~p~i  124 (210)
                      +.+.-....+.++|.+|+..-+..|..++.+++++|+|+++++.+.          +..... +...+.......+.++|
T Consensus       188 ~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~-LF~sI~n~~~F~~tsii  266 (354)
T KOG0082|consen  188 VEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLK-LFESICNNKWFANTSII  266 (354)
T ss_pred             EEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHH-HHHHHhcCcccccCcEE
Confidence            3334445778899999999999999999999999999999886321          223333 33334333455689999


Q ss_pred             EEEeCCCCCCC--------------ce-ecHHHHHHHHHHh----------CCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          125 LVGNKVDKESE--------------RV-VTKKEGINFAREY----------GCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       125 vv~nK~Dl~~~--------------~~-~~~~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ++.||.|+-.+              .. -..+++..+....          .+-+..+.|.+-.+|+.+|+.+.+.+.+.
T Consensus       267 LFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~  346 (354)
T KOG0082|consen  267 LFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN  346 (354)
T ss_pred             EEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence            99999998211              11 1233333333211          23367778899999999999999988654

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=3e-10  Score=96.19  Aligned_cols=119  Identities=15%  Similarity=0.192  Sum_probs=88.4

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCC--------------CCCC---CCceeeeEEEEEEECCe-EEEEEEEeCCCc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--------------EELS---PTIGVDFKVKYVDVGGK-KLKLAIWDTAGQ   72 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~   72 (210)
                      .+..-+|.++|+.++|||||..+++...-              .+..   ..-|.++......+... .+.++++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            67788999999999999999999974321              1111   12344555555555555 589999999999


Q ss_pred             cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      .+|.......++-+|++++|+|+...-..+.-.- |...     ...++|.++++||+|....
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv-~rqa-----~~~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETV-WRQA-----DKYGVPRILFVNKMDRLGA  143 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHH-HHHH-----hhcCCCeEEEEECcccccc
Confidence            9999999999999999999999998754433322 5433     3467999999999998543

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=5.6e-10  Score=88.03  Aligned_cols=156  Identities=16%  Similarity=0.128  Sum_probs=109.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC--CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELS--PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      -|...|+-.-|||||++.+.+.....-.  .--|.+.....+.....+..+.|+|.||++.+-......+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            4677899999999999999977543222  24555555555555556668999999999998888888888899999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH---hCCeEEEEccCCCCCHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE---YGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      |+++.-..+..+.  +..+...   .-...++|+||.|+.+...+. +...++...   ...+++.+|+++|.||+++.+
T Consensus        82 ~~deGl~~qtgEh--L~iLdll---gi~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          82 AADEGLMAQTGEH--LLILDLL---GIKNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             eCccCcchhhHHH--HHHHHhc---CCCceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            9976544443332  2233321   113458999999997654222 122222222   346689999999999999999


Q ss_pred             HHHHHHH
Q 028381          171 ELVLKIL  177 (210)
Q Consensus       171 ~l~~~~~  177 (210)
                      .|.+..-
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9999883

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.18  E-value=2e-11  Score=90.50  Aligned_cols=150  Identities=17%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC------C-----CCCCCC-C---------------ceeeeEEEEEEECC-----
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD------N-----FEELSP-T---------------IGVDFKVKYVDVGG-----   59 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~------~-----~~~~~~-~---------------~~~~~~~~~~~~~~-----   59 (210)
                      ...+.|.|.|+||+|||||+..|...      +     ..+.++ +               .....+...+...+     
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            35679999999999999999988421      0     001111 0               11123333333221     


Q ss_pred             -------------eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEE
Q 028381           60 -------------KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV  126 (210)
Q Consensus        60 -------------~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv  126 (210)
                                   ..+.+.|++|.|.-+...   ....-+|.+++|.-..-.+..+.++. -..++         .=++|
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~Ka-GimEi---------aDi~v  173 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKA-GIMEI---------ADIFV  173 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-T-THHHH----------SEEE
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhh-hhhhh---------ccEEE
Confidence                         135678888887433332   23445899999999888877665544 22223         23899


Q ss_pred             EeCCCCCCCceecHHHHHHHHHH-------hCCeEEEEccCCCCCHHHHHHHHHHH
Q 028381          127 GNKVDKESERVVTKKEGINFARE-------YGCLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       127 ~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (210)
                      +||.|++..+....+ .+.....       +.-|++.+||.++.|++++++.|.+.
T Consensus       174 VNKaD~~gA~~~~~~-l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~  228 (266)
T PF03308_consen  174 VNKADRPGADRTVRD-LRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH  228 (266)
T ss_dssp             EE--SHHHHHHHHHH-HHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             EeCCChHHHHHHHHH-HHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            999996433332222 2222211       12479999999999999999988773

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.18  E-value=3.3e-10  Score=94.07  Aligned_cols=120  Identities=16%  Similarity=0.173  Sum_probs=70.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE-EEEEEECCeEEEEEEEeCCCccccc-------cc---h
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK-VKYVDVGGKKLKLAIWDTAGQERFR-------TL---T   79 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~-------~~---~   79 (210)
                      +..++|+++|.+|+||||++|.|++........ ..+++.. ......+  ...+.++||||.....       ..   .
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHHHHHHH
Confidence            566899999999999999999999876433332 1222221 2222233  3568999999955421       11   1


Q ss_pred             hhccc--CccEEEEEEECCCcccHHHHHHHHHHHHh-hhccCCCCcEEEEEeCCCCCC
Q 028381           80 SSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEID-LYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        80 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      ..++.  ..|++++|..++.......-.. ++..+. .+....-..+|||.|+.|...
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~-aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLP-LLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHH-HHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            11223  4799999998764333211112 222222 222222346789999999754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.15  E-value=5e-10  Score=84.39  Aligned_cols=152  Identities=16%  Similarity=0.205  Sum_probs=94.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC-----C------CCCCCC-Cce---------------eeeEEEEEEE-------
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD-----N------FEELSP-TIG---------------VDFKVKYVDV-------   57 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~-----~------~~~~~~-~~~---------------~~~~~~~~~~-------   57 (210)
                      .+...|.|.|.||+|||||+..|...     .      ..+.++ +.|               ...+..++..       
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl  128 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL  128 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence            45678999999999999999887421     0      011112 111               1122222221       


Q ss_pred             -----------CCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEE
Q 028381           58 -----------GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV  126 (210)
Q Consensus        58 -----------~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv  126 (210)
                                 +...+.+.|++|.|.-+...   ....-+|.+++|.-..-.+..+.++. -..++..         ++|
T Consensus       129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~-GimEiaD---------i~v  195 (323)
T COG1703         129 SRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA-GIMEIAD---------IIV  195 (323)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHh-hhhhhhh---------eee
Confidence                       22245788889988544332   23345899999999888887777665 3333433         799


Q ss_pred             EeCCCCCCCceecHHH--HHHHH----H--HhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          127 GNKVDKESERVVTKKE--GINFA----R--EYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       127 ~nK~Dl~~~~~~~~~~--~~~~~----~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      +||.|....+....+.  +.++.    .  .+.-+++.+||.+|.|++++++.+.+..
T Consensus       196 INKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~  253 (323)
T COG1703         196 INKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR  253 (323)
T ss_pred             EeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence            9999965443222111  11111    1  1234699999999999999999998755

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.14  E-value=6.6e-10  Score=78.83  Aligned_cols=149  Identities=18%  Similarity=0.074  Sum_probs=86.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE-------------EEEEEE----------------------
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK-------------VKYVDV----------------------   57 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~-------------~~~~~~----------------------   57 (210)
                      .++|.|.|++|||||+|+.+++..--..+.. ...-+.+             ...+.+                      
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            5899999999999999999876321111000 0000000             000000                      


Q ss_pred             CCeEEEEEEEeCCCccccccchhhcccCcc-EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028381           58 GGKKLKLAIWDTAGQERFRTLTSSYYRGAQ-GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (210)
                      ......+.|++..|+ --.   ...+.-.| .-|+|+|.+..+-...-   -      ++.-. ..=++|+||.|+...-
T Consensus        93 ~~~~~Dll~iEs~GN-L~~---~~sp~L~d~~~v~VidvteGe~~P~K---~------gP~i~-~aDllVInK~DLa~~v  158 (202)
T COG0378          93 DFPDLDLLFIESVGN-LVC---PFSPDLGDHLRVVVIDVTEGEDIPRK---G------GPGIF-KADLLVINKTDLAPYV  158 (202)
T ss_pred             cCCcCCEEEEecCcc-eec---ccCcchhhceEEEEEECCCCCCCccc---C------CCcee-EeeEEEEehHHhHHHh
Confidence            111134556666661 111   11122234 77888888876532211   0      00001 1348999999997766


Q ss_pred             eecHHHHHHHHHHh--CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          137 VVTKKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       137 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      ..+.+...+-++..  +.+++++|+++|.|++++++|+....
T Consensus       159 ~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         159 GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            66656555556655  47899999999999999999987654

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=1.2e-09  Score=84.98  Aligned_cols=84  Identities=26%  Similarity=0.250  Sum_probs=57.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEEE----------C----CeEEEEEEEeCCCcc---
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVDV----------G----GKKLKLAIWDTAGQE---   73 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~--~~~~~~~~~~~~~----------~----~~~~~~~l~D~~g~~---   73 (210)
                      .+++.|+|.|++|||||.+.++..... .+||  |...+.....+..          .    .....+.++|.+|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999987742 4566  4444443333221          1    123568899999832   


Q ss_pred             ----ccccchhhcccCccEEEEEEECCC
Q 028381           74 ----RFRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        74 ----~~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                          .+......-++.+|+++.|+|+..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence                233334445789999999999773

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.13  E-value=1.5e-10  Score=83.84  Aligned_cols=168  Identities=22%  Similarity=0.338  Sum_probs=95.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCcccccc-----chhhcccCc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRT-----LTSSYYRGA   86 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~   86 (210)
                      ..-||+++|.+|+|||++---+..+.........|.++...-.++. -+..-+.+||.+|++.+-.     .....++++
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            3568999999999999986666544322222223332222211111 1235689999999874322     345678999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCC--ceecHHH----HHHHHHHhCCeEEEEcc
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESE--RVVTKKE----GINFAREYGCLFIECSA  159 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~--~~~~~~~----~~~~~~~~~~~~~~~Sa  159 (210)
                      +++++|||++..+-..++.. +..-++.. ...+...+....+|+|+...  +....++    .+.+....++.++++|.
T Consensus        83 ~vli~vFDves~e~~~D~~~-yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHY-YQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHH-HHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            99999999998765555443 33322221 23456677888899999432  2222222    23333333455777765


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCc
Q 028381          160 KTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      -+. .+-..|..+...+..+.+.
T Consensus       162 wDe-tl~KAWS~iv~~lipn~~~  183 (295)
T KOG3886|consen  162 WDE-TLYKAWSSIVYNLIPNVSA  183 (295)
T ss_pred             hhH-HHHHHHHHHHHhhCCChHH
Confidence            432 2333345555444444443

>smart00053 DYNc Dynamin, GTPase

Probab=99.11  E-value=1.4e-09  Score=81.23  Aligned_cols=69  Identities=22%  Similarity=0.211  Sum_probs=43.5

Q ss_pred             EEEEEEeCCCcccc-------------ccchhhccc-CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 028381           62 LKLAIWDTAGQERF-------------RTLTSSYYR-GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG  127 (210)
Q Consensus        62 ~~~~l~D~~g~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~  127 (210)
                      ..++++|+||....             ..+...+++ ..+++++|+|+.....-..... +...+.    ..+.++++|+
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~ld----~~~~rti~Vi  199 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK-LAKEVD----PQGERTIGVI  199 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH-HHHHHH----HcCCcEEEEE
Confidence            46889999996421             123344556 4568999999876543333222 333333    3568999999


Q ss_pred             eCCCCCCC
Q 028381          128 NKVDKESE  135 (210)
Q Consensus       128 nK~Dl~~~  135 (210)
                      ||.|..++
T Consensus       200 TK~D~~~~  207 (240)
T smart00053      200 TKLDLMDE  207 (240)
T ss_pred             ECCCCCCc
Confidence            99998643

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.1e-09  Score=90.19  Aligned_cols=118  Identities=23%  Similarity=0.303  Sum_probs=86.2

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC----------------CceeeeEEEEE-----EECCeEEEEEEE
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP----------------TIGVDFKVKYV-----DVGGKKLKLAIW   67 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~----------------~~~~~~~~~~~-----~~~~~~~~~~l~   67 (210)
                      .......+|.++|+-+.|||+|+.-|.....+..+.                .-+..+.....     ...+..+-++++
T Consensus       123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil  202 (971)
T KOG0468|consen  123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL  202 (971)
T ss_pred             cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence            345678899999999999999999997654332211                11222222222     225667889999


Q ss_pred             eCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028381           68 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (210)
                      |||||..+.....+.++.+|++++|+|+...-.++.-+- +..     +-....|+++|+||.|+
T Consensus       203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ikh-----aiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IKH-----AIQNRLPIVVVINKVDR  261 (971)
T ss_pred             cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HHH-----HHhccCcEEEEEehhHH
Confidence            999999999888899999999999999999877654432 222     22456899999999996

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.07  E-value=1.1e-08  Score=75.35  Aligned_cols=158  Identities=16%  Similarity=0.080  Sum_probs=91.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRG   85 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~   85 (210)
                      -..||+++|.|.+|||||+..++.-... ......++.......+....-.+++.|+||.-+-.       .......+.
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence            3479999999999999999999865432 11222333444444555556678889999943222       233456678


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC------CCceecHHHHHHHHHHhCCeEEEEcc
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE------SERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      +|.+++|.|++..+.--.+.+.-+..+....++....+.+--.|....      .--......+..+..++.+.-.++=.
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            999999999998776555544345555554544444433333333221      11223444555555555544333334


Q ss_pred             CCCCCHHHHHHH
Q 028381          160 KTRVNVQQCFEE  171 (210)
Q Consensus       160 ~~~~~i~~~~~~  171 (210)
                      ++...++++.+.
T Consensus       220 ReD~t~DdfIDv  231 (364)
T KOG1486|consen  220 REDCTVDDFIDV  231 (364)
T ss_pred             ecCCChHHHHHH
Confidence            444455554443

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=6.8e-10  Score=81.08  Aligned_cols=172  Identities=18%  Similarity=0.204  Sum_probs=109.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---chhhcccCccEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---LTSSYYRGAQGIIM   91 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~~i~   91 (210)
                      -+|+++|...|||||+.+.+.....+...-..+.+.....-.+.+.-+.+.+||+||+-.+-.   -....++++.++++
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif  107 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF  107 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence            569999999999999998888766554433333333333334444557799999999765432   23456889999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-eecHH-----HHHHHHHHhC-----CeEEEEccC
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-VVTKK-----EGINFAREYG-----CLFIECSAK  160 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~-----~~~~~~~~~~-----~~~~~~Sa~  160 (210)
                      |+|+.+. ..+.+.......-+.+.-++++.+=|.+.|.|..... .+..+     ....-....|     +.++-+| .
T Consensus       108 vIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS-I  185 (347)
T KOG3887|consen  108 VIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS-I  185 (347)
T ss_pred             EEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee-e
Confidence            9998864 3444444233333445567888989999999974321 12111     1111122222     2344444 4


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCccccccc
Q 028381          161 TRVNVQQCFEELVLKILDTPSLLAEGSK  188 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~  188 (210)
                      -...|-+.|..+++.+..+-+.++....
T Consensus       186 yDHSIfEAFSkvVQkLipqLptLEnlLn  213 (347)
T KOG3887|consen  186 YDHSIFEAFSKVVQKLIPQLPTLENLLN  213 (347)
T ss_pred             cchHHHHHHHHHHHHHhhhchhHHHHHH
Confidence            4556889999999999877776655433

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=2.4e-09  Score=80.40  Aligned_cols=160  Identities=18%  Similarity=0.170  Sum_probs=102.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC----------CC-----CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD----------NF-----EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      ..-+||..+|+.+-|||||-..++.-          .|     .+.....+.++....+.++..+..+..+|+||+..|-
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv   89 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence            34589999999999999998877521          11     1111244555555555555555667778999999988


Q ss_pred             cchhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHHH
Q 028381           77 TLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VTKKEGINFARE  149 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~  149 (210)
                      .....-..++|+.|+|+++++..   +-+.+   +  ..+    .-++| ++++.||+|+.+...   +-..+++++...
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHi---L--lar----qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~  160 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPMPQTREHI---L--LAR----QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE  160 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCCCcchhhh---h--hhh----hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence            87777788899999999999853   33333   1  112    23454 567779999976433   234567788888


Q ss_pred             hCCe-----EEEEccCCCC--------CHHHHHHHHHHHHHcCC
Q 028381          150 YGCL-----FIECSAKTRV--------NVQQCFEELVLKILDTP  180 (210)
Q Consensus       150 ~~~~-----~~~~Sa~~~~--------~i~~~~~~l~~~~~~~~  180 (210)
                      ++++     ++.-||...-        .|.++++.+-..+....
T Consensus       161 y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe  204 (394)
T COG0050         161 YGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE  204 (394)
T ss_pred             cCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence            8764     6666654321        14555555555543333

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.03  E-value=7.2e-10  Score=76.68  Aligned_cols=54  Identities=22%  Similarity=0.303  Sum_probs=44.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      +++++|.+|+|||||+|++++..........+.+.....+.++.   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999888766555666666666666654   4799999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=99.02  E-value=2.2e-09  Score=78.02  Aligned_cols=96  Identities=20%  Similarity=0.099  Sum_probs=66.6

Q ss_pred             cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HH
Q 028381           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----RE  149 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~  149 (210)
                      +...+..+++++|++++|+|+.+....      |...+..  ...++|+++|+||+|+..... ..+....+.     ..
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~   94 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRL--FGGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAG   94 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHH--hcCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhh
Confidence            466778889999999999999886421      2222211  134689999999999864332 233333333     22


Q ss_pred             hCC---eEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          150 YGC---LFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       150 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      .+.   +++++||+++.|+++++.++.+.+...
T Consensus        95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~  127 (190)
T cd01855          95 LGLKPKDVILISAKKGWGVEELINAIKKLAKKG  127 (190)
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHHHHHhhcC
Confidence            333   589999999999999999999887543

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.01  E-value=9.8e-10  Score=78.36  Aligned_cols=57  Identities=26%  Similarity=0.343  Sum_probs=47.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG   71 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (210)
                      ...++++++|.||+|||||+|+|.+.......+.+++|.....+.++.   .+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            345899999999999999999999988777777788887766666543   478999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.99  E-value=8.8e-09  Score=83.03  Aligned_cols=116  Identities=15%  Similarity=0.151  Sum_probs=79.9

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028381           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (210)
                      ....+.++|.+|+...+..|..++.+++++|+|+++++-          ..+......|...+.. ....+.|++|+.||
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~-~~~~~~~iil~lnK  312 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN-PWFKNTPIILFLNK  312 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS-GGGTTSEEEEEEE-
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC-cccccCceEEeeec
Confidence            345678999999999999999999999999999998752          2244445534443333 44558999999999


Q ss_pred             CCCC------CC-----------c-eecHHHHHHHHHHh------------CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          130 VDKE------SE-----------R-VVTKKEGINFAREY------------GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       130 ~Dl~------~~-----------~-~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      .|+-      ..           . .-..+.+..+....            .+.+..++|.+..++..+|+.+.+.+
T Consensus       313 ~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  313 IDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            9971      11           1 12344455544322            12467889999999999999887754

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.99  E-value=2.4e-09  Score=81.68  Aligned_cols=55  Identities=25%  Similarity=0.148  Sum_probs=40.6

Q ss_pred             CcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCeEEEEccCCCCCHHHHHHHHHHH
Q 028381          121 CIKLLVGNKVDKESERVVTKKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       121 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (210)
                      .+-++|+||+|+........+......+..  ..+++++|++++.|++++.+||...
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            466999999999653333333444444443  5779999999999999999999874

>cd01858 NGP_1 NGP-1

Probab=98.99  E-value=1.7e-09  Score=76.19  Aligned_cols=56  Identities=23%  Similarity=0.357  Sum_probs=44.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG   71 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (210)
                      ..++|+++|.||+|||||+|+|.+.......+.++.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            45789999999999999999999887766777777776655555433   267889998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.97  E-value=6.4e-09  Score=76.83  Aligned_cols=91  Identities=21%  Similarity=0.191  Sum_probs=63.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhcccCcc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-------RTLTSSYYRGAQ   87 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~d   87 (210)
                      .+|.++|.|.+||||++..+.+. ++++...-+++............-++.+.|+||.-+-       .....+..+.|+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~-~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn  138 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGT-FSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN  138 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCC-CCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence            48999999999999999999854 4444443444444444444445667888999993221       123445678899


Q ss_pred             EEEEEEECCCcccHHHHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSD  106 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~  106 (210)
                      .+++|.|+-.+-+...+.+
T Consensus       139 li~~vld~~kp~~hk~~ie  157 (358)
T KOG1487|consen  139 LIFIVLDVLKPLSHKKIIE  157 (358)
T ss_pred             EEEEEeeccCcccHHHHHH
Confidence            9999999988766665544

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.97  E-value=6.6e-10  Score=84.41  Aligned_cols=155  Identities=16%  Similarity=0.112  Sum_probs=93.6

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccc-ccc-c------h
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRT-L------T   79 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~-~------~   79 (210)
                      ....--|.++|..|+||||||+.|+.... +...-  |...+......+  . +-.+.+.||.|.-. ... +      .
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp--s-g~~vlltDTvGFisdLP~~LvaAF~AT  251 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP--S-GNFVLLTDTVGFISDLPIQLVAAFQAT  251 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC--C-CcEEEEeechhhhhhCcHHHHHHHHHH
Confidence            34456789999999999999999994432 22222  333333333222  2 22356679998321 111 1      1


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCC----cEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEE
Q 028381           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC----IKLLVGNKVDKESERVVTKKEGINFAREYGCLFI  155 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~----p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                      ...+..+|.++-|.|+++|........ .+..+.... -++.    .++=|-||.|.........        +.+  .+
T Consensus       252 LeeVaeadlllHvvDiShP~ae~q~e~-Vl~vL~~ig-v~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v  319 (410)
T KOG0410|consen  252 LEEVAEADLLLHVVDISHPNAEEQRET-VLHVLNQIG-VPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DV  319 (410)
T ss_pred             HHHHhhcceEEEEeecCCccHHHHHHH-HHHHHHhcC-CCcHHHHhHHHhhccccccccccCccc--------cCC--cc
Confidence            123467899999999999987665555 444443321 1122    2344558888643322111        112  57


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHcCC
Q 028381          156 ECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      .+||++|+|++++.+.+-..+....
T Consensus       320 ~isaltgdgl~el~~a~~~kv~~~t  344 (410)
T KOG0410|consen  320 GISALTGDGLEELLKAEETKVASET  344 (410)
T ss_pred             ccccccCccHHHHHHHHHHHhhhhh
Confidence            8999999999999999888776544

>cd01900 YchF YchF subfamily

Probab=98.96  E-value=1.2e-09  Score=83.14  Aligned_cols=79  Identities=23%  Similarity=0.163  Sum_probs=49.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCe---------------EEEEEEEeCCCccccc---
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGK---------------KLKLAIWDTAGQERFR---   76 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------~~~~~l~D~~g~~~~~---   76 (210)
                      |+++|.|+||||||+|+|++... .....+++|..  .-.+.+.+.               ...+.++|+||...-.   
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~   79 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG   79 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence            57999999999999999998765 22222222211  112222222               2358999999943211   


Q ss_pred             -c---chhhcccCccEEEEEEECC
Q 028381           77 -T---LTSSYYRGAQGIIMVYDVT   96 (210)
Q Consensus        77 -~---~~~~~~~~~d~~i~v~d~~   96 (210)
                       .   .....++.+|++++|+|+.
T Consensus        80 ~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          80 EGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hHHHHHHHHHHHhCCEEEEEEeCc
Confidence             1   1223467899999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.96  E-value=5e-09  Score=81.33  Aligned_cols=89  Identities=19%  Similarity=0.179  Sum_probs=66.1

Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc
Q 028381           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      +..++++|++++|+|+.++.+.......|+..+.    ..++|+++|+||+|+..... ..+.........+.+++++||
T Consensus        75 q~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~----~~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA  149 (298)
T PRK00098         75 KLIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE----ANGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSA  149 (298)
T ss_pred             cceeecCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeC
Confidence            3346899999999999988776665444665554    35689999999999953221 222334455567889999999


Q ss_pred             CCCCCHHHHHHHHH
Q 028381          160 KTRVNVQQCFEELV  173 (210)
Q Consensus       160 ~~~~~i~~~~~~l~  173 (210)
                      +++.|+++++..+.
T Consensus       150 ~~g~gi~~L~~~l~  163 (298)
T PRK00098        150 KEGEGLDELKPLLA  163 (298)
T ss_pred             CCCccHHHHHhhcc
Confidence            99999999988764

>cd01859 MJ1464 MJ1464

Probab=98.95  E-value=2.3e-09  Score=75.40  Aligned_cols=94  Identities=15%  Similarity=0.080  Sum_probs=64.5

Q ss_pred             cchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEE
Q 028381           77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIE  156 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      .++...++++|++++|+|++++...... . +...+.    ..++|+++|+||+|+......  +....+....+.+++.
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~-l~~~~~----~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~   75 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRSR-K-LERYVL----ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCCH-H-HHHHHH----hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence            4456677789999999999876543321 1 222222    346899999999998533211  1111233345678999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHc
Q 028381          157 CSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      +||+++.|++++++.+.+.+..
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             EEccccccHHHHHHHHHHHHhh
Confidence            9999999999999999887753

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=8.8e-09  Score=79.71  Aligned_cols=126  Identities=17%  Similarity=0.259  Sum_probs=79.6

Q ss_pred             cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEE------CCeE-----------------
Q 028381            7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDV------GGKK-----------------   61 (210)
Q Consensus         7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~------~~~~-----------------   61 (210)
                      ........--|+++|+-..||||||+.|+..+|+....  .+.+.+....+.-      +|..                 
T Consensus        51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~  130 (532)
T KOG1954|consen   51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN  130 (532)
T ss_pred             cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence            33455566779999999999999999999999875544  3333333333321      1111                 


Q ss_pred             ----------------EEEEEEeCCCcc-----------ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhh
Q 028381           62 ----------------LKLAIWDTAGQE-----------RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL  114 (210)
Q Consensus        62 ----------------~~~~l~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  114 (210)
                                      -.++++||||.-           .+.....-++..+|.++++||+..-+--.+... .+..++ 
T Consensus       131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~-vi~aLk-  208 (532)
T KOG1954|consen  131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKR-VIDALK-  208 (532)
T ss_pred             HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHH-HHHHhh-
Confidence                            168899999931           233345557789999999999876543333322 222222 


Q ss_pred             hccCCCCcEEEEEeCCCCCCCce
Q 028381          115 YSTNQDCIKLLVGNKVDKESERV  137 (210)
Q Consensus       115 ~~~~~~~p~ivv~nK~Dl~~~~~  137 (210)
                         ...--+-||.||.|..+...
T Consensus       209 ---G~EdkiRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  209 ---GHEDKIRVVLNKADQVDTQQ  228 (532)
T ss_pred             ---CCcceeEEEeccccccCHHH
Confidence               22234568899999865543

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=5.7e-08  Score=75.79  Aligned_cols=157  Identities=19%  Similarity=0.243  Sum_probs=91.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC--------CC--CceeeeEEEEEEECCeEEEEEEEeCCCccc-------
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL--------SP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------   74 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------   74 (210)
                      .-.|++.++|++|.|||||||.|+...+...        .+  +.........+.-++..+.++++||||...       
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            3459999999999999999999987754332        11  223333333333467788999999999211       


Q ss_pred             -----------ccc-------chhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           75 -----------FRT-------LTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        75 -----------~~~-------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                                 ++.       ..+..+.  .+++++|.+..+... +..+.-.+...+     ...+.+|-|+.|.|...
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l-----~~~vNiIPVI~KaD~lT  172 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL-----SKKVNLIPVIAKADTLT  172 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH-----hccccccceeeccccCC
Confidence                       110       1111122  678999999876532 222211122222     34567788888999854


Q ss_pred             Ccee--cHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          135 ERVV--TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ...+  ....+.+....+++++|....-..   +.-+....+.+.
T Consensus       173 ~~El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~  214 (366)
T KOG2655|consen  173 KDELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLK  214 (366)
T ss_pred             HHHHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHh
Confidence            3322  344556666677888776665544   333444444443

>PRK12289 GTPase RsgA; Reviewed

Probab=98.90  E-value=1.1e-08  Score=80.69  Aligned_cols=91  Identities=19%  Similarity=0.180  Sum_probs=64.9

Q ss_pred             chhhcccCccEEEEEEECCCcccHH-HHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEE
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFT-NLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIE  156 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      +.+..++++|.+++|+|+.++.... .+.. |+..+.    ..++|+++|+||+|+......  +.........+.+++.
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR-~L~~a~----~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~  154 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSR-FLVKAE----STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLF  154 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHH-HHHHHH----HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEE
Confidence            3445588999999999999876333 3333 554442    357899999999999643221  2223333567889999


Q ss_pred             EccCCCCCHHHHHHHHHHH
Q 028381          157 CSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~  175 (210)
                      +||+++.|++++++.+...
T Consensus       155 iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        155 ISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEcCCCCCHHHHhhhhccc
Confidence            9999999999999888653

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.90  E-value=3.3e-08  Score=76.62  Aligned_cols=139  Identities=17%  Similarity=0.247  Sum_probs=83.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CCCceeeeEEEEEEECCeEEEEEEEeCCCccccc---c
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR---T   77 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~   77 (210)
                      ...++|+++|+.|+|||||+|.|++......           .++.....+...+.-++....++++||||....-   .
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            5679999999999999999999997633221           1233333444444447778899999999921110   0


Q ss_pred             chhh-----------------------cc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028381           78 LTSS-----------------------YY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        78 ~~~~-----------------------~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (210)
                      .|..                       .+  ..+++++|.+..+... +..+.-..+..+     ...+.+|-|+.|.|.
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~l-----s~~vNlIPVI~KaD~  174 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRL-----SKRVNLIPVIAKADT  174 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHH-----hcccCeeeeeecccc
Confidence            1110                       01  2468999998876532 222211122222     234677888899998


Q ss_pred             CCCce--ecHHHHHHHHHHhCCeEEE
Q 028381          133 ESERV--VTKKEGINFAREYGCLFIE  156 (210)
Q Consensus       133 ~~~~~--~~~~~~~~~~~~~~~~~~~  156 (210)
                      -....  .-.+.+.+....+++++|.
T Consensus       175 lT~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         175 LTDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCceeC
Confidence            43322  2344566666677888774

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.90  E-value=1.3e-08  Score=78.57  Aligned_cols=89  Identities=15%  Similarity=0.073  Sum_probs=66.7

Q ss_pred             hhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEE
Q 028381           79 TSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC  157 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      .+..+.++|.+++|+|+.++. ++..+.. |+..+..    .++|+++|+||+|+....  .......+....+.+++.+
T Consensus        72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~v  144 (287)
T cd01854          72 EQVIAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEA----AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAV  144 (287)
T ss_pred             ceeEEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEE
Confidence            345688999999999999987 7777666 6665543    468999999999996442  1112233344568899999


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 028381          158 SAKTRVNVQQCFEELVL  174 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~  174 (210)
                      ||+++.|+++++.++..
T Consensus       145 SA~~g~gi~~L~~~L~~  161 (287)
T cd01854         145 SAKTGEGLDELREYLKG  161 (287)
T ss_pred             ECCCCccHHHHHhhhcc
Confidence            99999999998887764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=2e-09  Score=81.23  Aligned_cols=188  Identities=14%  Similarity=0.136  Sum_probs=115.3

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------CceeeeEEEE-E---------------------------
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP------TIGVDFKVKY-V---------------------------   55 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~------~~~~~~~~~~-~---------------------------   55 (210)
                      .+...++|.-+|+..-||||+++.+.+-.......      |....+.... +                           
T Consensus        34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~  113 (466)
T KOG0466|consen   34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD  113 (466)
T ss_pred             hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence            34567999999999999999999885432100000      0000000000 0                           


Q ss_pred             --EECC---eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028381           56 --DVGG---KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        56 --~~~~---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  130 (210)
                        ...+   --..+.++|+||++-.-+....-..-.|++++++..+.........+ .+..++..   .-..++++-||.
T Consensus       114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsE-HLaaveiM---~LkhiiilQNKi  189 (466)
T KOG0466|consen  114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSE-HLAAVEIM---KLKHIIILQNKI  189 (466)
T ss_pred             cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhh-HHHHHHHh---hhceEEEEechh
Confidence              0000   01246788999998766655555556788888888775432222222 22223221   124578999999


Q ss_pred             CCCCCce--ecHHHHHHHHHHh---CCeEEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCc
Q 028381          131 DKESERV--VTKKEGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPE  201 (210)
Q Consensus       131 Dl~~~~~--~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (210)
                      |+..++.  ...+++..|....   +.|++++||.-..|++-+.+++...+.-..+.+.......--..|...++.
T Consensus       190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG  265 (466)
T KOG0466|consen  190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPG  265 (466)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCCcEEEEEeeccCCCC
Confidence            9965443  3455666666644   678999999999999999999999997777777665554444445544443

>PRK12288 GTPase RsgA; Reviewed

Probab=98.85  E-value=3.2e-08  Score=78.11  Aligned_cols=89  Identities=16%  Similarity=0.156  Sum_probs=67.2

Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHhCCeEEEEccC
Q 028381           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~  160 (210)
                      +..++|.+++|++.....++..+.. |+..+.    ..++|.++|+||+|+..... .............+.+++++||+
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~  191 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDR-YLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSH  191 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHH-HHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4578999999999988888888777 655443    35689999999999964321 11223334445678899999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028381          161 TRVNVQQCFEELVLK  175 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~  175 (210)
                      ++.|+++++.++...
T Consensus       192 tg~GideL~~~L~~k  206 (347)
T PRK12288        192 TGEGLEELEAALTGR  206 (347)
T ss_pred             CCcCHHHHHHHHhhC
Confidence            999999999988753

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.84  E-value=1.5e-08  Score=78.40  Aligned_cols=59  Identities=24%  Similarity=0.396  Sum_probs=48.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      ...++++++|.||+|||||+|+|.+.........++.|.....+..+.   .+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            456899999999999999999999887766777778777766666543   47899999963

>cd01856 YlqF YlqF

Probab=98.84  E-value=1e-08  Score=73.34  Aligned_cols=58  Identities=19%  Similarity=0.367  Sum_probs=45.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      ...++++++|.+|+|||||++++.+..+.......+++.....+.++   ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            34579999999999999999999988775555566666666656554   34789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.83  E-value=1.2e-08  Score=78.46  Aligned_cols=58  Identities=21%  Similarity=0.404  Sum_probs=46.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      ...++++++|.||+|||||+|+|.+.........++.|.....+.++.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            356899999999999999999999887766666777777666666543   4789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01859 MJ1464 MJ1464

Probab=98.83  E-value=1.4e-08  Score=71.47  Aligned_cols=56  Identities=27%  Similarity=0.337  Sum_probs=42.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG   71 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (210)
                      ...+++++|.+++|||||++++.+.......++.+.+.....+..+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            46789999999999999999999776555566667665544333333   588999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.81  E-value=1.1e-08  Score=80.11  Aligned_cols=58  Identities=19%  Similarity=0.320  Sum_probs=51.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      ..++++|+|.|++|||||||+|.+.....+.+.+|.|.....+.++..   +.++||||.-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence            348899999999999999999999988788888899999888887775   8899999953

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.80  E-value=1.7e-07  Score=68.69  Aligned_cols=146  Identities=19%  Similarity=0.215  Sum_probs=83.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC---------CCC-CceeeeEEEEEEECCeEEEEEEEeCCCccc-------
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE---------LSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------   74 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------   74 (210)
                      .-.|+|.++|.+|.|||||+|.|+......         ..+ |.........+.-.+.+.+++++||||...       
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            456999999999999999999997543211         111 333333333344467778899999999211       


Q ss_pred             -----------cccch--------hhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           75 -----------FRTLT--------SSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        75 -----------~~~~~--------~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                                 +....        ...+  ..+++++|.+..+-.. +-.+.-.++..+..     -+.+|-|+-|.|-.
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~-----vvNvvPVIakaDtl  197 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTE-----VVNVVPVIAKADTL  197 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhh-----hheeeeeEeecccc
Confidence                       11111        1111  2467888888776432 22221112222221     24566677798852


Q ss_pred             --CCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028381          134 --SERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus       134 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (210)
                        +++..-.+.++.-...+++.+++--+-+..
T Consensus       198 TleEr~~FkqrI~~el~~~~i~vYPq~~fded  229 (336)
T KOG1547|consen  198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDED  229 (336)
T ss_pred             cHHHHHHHHHHHHHHHHhcCcccccccccccc
Confidence              233334455666667778887776555444

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.1e-07  Score=78.99  Aligned_cols=144  Identities=15%  Similarity=0.173  Sum_probs=84.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE----------------------------------------
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK----------------------------------------   51 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~----------------------------------------   51 (210)
                      +...||+|.|..++||||++|+++..+.-+....+.+...                                        
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            4568999999999999999999975543221111111111                                        


Q ss_pred             ----EEEEEECCeE-----EEEEEEeCCCcc---ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCC
Q 028381           52 ----VKYVDVGGKK-----LKLAIWDTAGQE---RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ  119 (210)
Q Consensus        52 ----~~~~~~~~~~-----~~~~l~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  119 (210)
                          ...+..+...     -.+.++|.||..   ...+-...+...+|++|+|.++.+..+.....  ++.....    .
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~--Ff~~vs~----~  260 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ--FFHKVSE----E  260 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH--HHHHhhc----c
Confidence                0001111110     146788999943   33344455677899999999988765443332  3333322    2


Q ss_pred             CCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--------eEEEEccCC
Q 028381          120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGC--------LFIECSAKT  161 (210)
Q Consensus       120 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~  161 (210)
                      ...+.|+.||.|....+....+++.....++++        .++++|++.
T Consensus       261 KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  261 KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            345556668889866655555665555444432        278899764

>cd01855 YqeH YqeH

Probab=98.73  E-value=2.3e-08  Score=72.66  Aligned_cols=55  Identities=24%  Similarity=0.398  Sum_probs=42.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC--------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNF--------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG   71 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (210)
                      ..+++++|.+|+|||||+|+|.+...        ...+..+++|.....+.++.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            35899999999999999999997542        23334567777777776654   478999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.70  E-value=9.7e-08  Score=76.07  Aligned_cols=95  Identities=23%  Similarity=0.228  Sum_probs=67.3

Q ss_pred             ccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHH----HHH
Q 028381           72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI----NFA  147 (210)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~  147 (210)
                      .+.+..+...+...++++++|+|+.+....      |...+..+.  .+.|+++|+||+|+.... ...+.+.    +++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s------~~~~l~~~~--~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~  120 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS------LIPELKRFV--GGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRA  120 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCCC------ccHHHHHHh--CCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHH
Confidence            345666777778899999999999775421      334444332  257999999999985432 2233333    345


Q ss_pred             HHhCC---eEEEEccCCCCCHHHHHHHHHHH
Q 028381          148 REYGC---LFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       148 ~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~  175 (210)
                      ...++   .++.+||+++.|+++++..+.+.
T Consensus       121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            56666   38999999999999999999765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.70  E-value=4.2e-08  Score=68.93  Aligned_cols=57  Identities=23%  Similarity=0.262  Sum_probs=42.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG   71 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (210)
                      ....+++++|.+|+|||||+|.+.+..........+++.....+..+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence            35688999999999999999999987654444445555554544443   3478899998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.68  E-value=2.1e-08  Score=73.02  Aligned_cols=125  Identities=17%  Similarity=0.142  Sum_probs=87.6

Q ss_pred             EEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHhhhccCCCCcE
Q 028381           54 YVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIK  123 (210)
Q Consensus        54 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~  123 (210)
                      .++++-....+.+.|.+|+..-...|...+.++-.+++++.++.          ....+.... +...+-.++...+.++
T Consensus       191 eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkA-LFrTIi~yPWF~nssV  269 (359)
T KOG0085|consen  191 EYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSV  269 (359)
T ss_pred             ecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH-HHHHHhccccccCCce
Confidence            33445556678899999999989999999999888877766553          344555555 5555666777889999


Q ss_pred             EEEEeCCCCCCCc----------------eecHHHHHHHHHHh----C-----C-eEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          124 LLVGNKVDKESER----------------VVTKKEGINFAREY----G-----C-LFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       124 ivv~nK~Dl~~~~----------------~~~~~~~~~~~~~~----~-----~-~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      |+..||.|+.+..                .-+.+.++++..++    +     + .-..+.|.+..||.-+|..+.+.++
T Consensus       270 IlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiL  349 (359)
T KOG0085|consen  270 ILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  349 (359)
T ss_pred             EEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHH
Confidence            9999999985332                12233344444333    2     1 1355778888999999999998887


Q ss_pred             cC
Q 028381          178 DT  179 (210)
Q Consensus       178 ~~  179 (210)
                      +.
T Consensus       350 q~  351 (359)
T KOG0085|consen  350 QL  351 (359)
T ss_pred             Hh
Confidence            54

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=1.7e-07  Score=72.86  Aligned_cols=155  Identities=19%  Similarity=0.189  Sum_probs=95.6

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------CC------------CCceeeeEEEEEEE-------
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE------------LS------------PTIGVDFKVKYVDV-------   57 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~------------~~------------~~~~~~~~~~~~~~-------   57 (210)
                      .+.-..+|++++|...+|||||+-.|+.+....            ..            ...+.+.....+.+       
T Consensus       162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE  241 (591)
T KOG1143|consen  162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE  241 (591)
T ss_pred             cccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence            344567999999999999999998876442111            00            01111111111111       


Q ss_pred             ---CCeEEEEEEEeCCCccccccchhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028381           58 ---GGKKLKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        58 ---~~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (210)
                         +....-++++|++|+..|.......+.  ..+..++|+++.....+-.-+  .+-.+.    .-++|++|+++|+|+
T Consensus       242 Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrE--HLgl~~----AL~iPfFvlvtK~Dl  315 (591)
T KOG1143|consen  242 EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTRE--HLGLIA----ALNIPFFVLVTKMDL  315 (591)
T ss_pred             HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHH--HHHHHH----HhCCCeEEEEEeecc
Confidence               112245789999999998876655554  358888999988765443222  233333    346899999999999


Q ss_pred             CCCc------------------------eecHHHHHHHHHHh----CCeEEEEccCCCCCHHHHH
Q 028381          133 ESER------------------------VVTKKEGINFAREY----GCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       133 ~~~~------------------------~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~~  169 (210)
                      .+..                        .-...++...+.+.    -+|+|.+|+.+|+|++-+.
T Consensus       316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~  380 (591)
T KOG1143|consen  316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR  380 (591)
T ss_pred             ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence            6441                        11223333333333    2579999999999987643

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=1.8e-08  Score=79.18  Aligned_cols=154  Identities=15%  Similarity=0.182  Sum_probs=107.7

Q ss_pred             ccccccceeeEEEEEcCCCCcHHHHHHHHhcCC-----------------CCCCCCCceeeeEEEEEEECCeEEEEEEEe
Q 028381            6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDN-----------------FEELSPTIGVDFKVKYVDVGGKKLKLAIWD   68 (210)
Q Consensus         6 ~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D   68 (210)
                      .....+.+.-+|.++.+-.+||||.-.|++.-.                 |......-|.++...-+.++.+..+++++|
T Consensus        29 ~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlid  108 (753)
T KOG0464|consen   29 IINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLID  108 (753)
T ss_pred             CCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeec
Confidence            344556677899999999999999999886321                 111111346677777788899999999999


Q ss_pred             CCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q 028381           69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR  148 (210)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  148 (210)
                      |||+..+.-.....++--|+++.|+|++..-.-+.+.- |..     ..+.++|.....||+|.....-  ...+..+-.
T Consensus       109 tpghvdf~leverclrvldgavav~dasagve~qtltv-wrq-----adk~~ip~~~finkmdk~~anf--e~avdsi~e  180 (753)
T KOG0464|consen  109 TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-WRQ-----ADKFKIPAHCFINKMDKLAANF--ENAVDSIEE  180 (753)
T ss_pred             CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeee-ehh-----ccccCCchhhhhhhhhhhhhhh--hhHHHHHHH
Confidence            99999999888888888999999999998765555544 643     4456789999999999743321  122344445


Q ss_pred             HhCCe--EEEEccCCCCCHHH
Q 028381          149 EYGCL--FIECSAKTRVNVQQ  167 (210)
Q Consensus       149 ~~~~~--~~~~Sa~~~~~i~~  167 (210)
                      ++++.  .+.+..-+..|...
T Consensus       181 kl~ak~l~l~lpi~eak~fnk  201 (753)
T KOG0464|consen  181 KLGAKALKLQLPIGEAKGFNK  201 (753)
T ss_pred             HhCCceEEEEecccccccccc
Confidence            66665  23333334445533

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.64  E-value=9.7e-07  Score=70.07  Aligned_cols=155  Identities=16%  Similarity=0.227  Sum_probs=90.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC-----------------CCCCCCC--Cc---eeee---EEEEEEE-CCeEEEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD-----------------NFEELSP--TI---GVDF---KVKYVDV-GGKKLKLAI   66 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~-----------------~~~~~~~--~~---~~~~---~~~~~~~-~~~~~~~~l   66 (210)
                      -.+=|.++||..+||||||+||...                 ..++...  +.   ..-|   ....+.+ ++..+++.+
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            3466899999999999999998421                 2222222  11   1101   1223333 567899999


Q ss_pred             EeCCCc-------------cccc-cchhh---------------ccc--CccEEEEEEECC----CcccHHHHHHHHHHH
Q 028381           67 WDTAGQ-------------ERFR-TLTSS---------------YYR--GAQGIIMVYDVT----RRDTFTNLSDVWAKE  111 (210)
Q Consensus        67 ~D~~g~-------------~~~~-~~~~~---------------~~~--~~d~~i~v~d~~----~~~s~~~~~~~~~~~  111 (210)
                      +|+.|-             +.+- .-|..               .++  ..=++|+.-|-+    .++.+....+.....
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            999871             0000 01111               111  112666666644    234555555545555


Q ss_pred             HhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC--CCHHHHHHHHH
Q 028381          112 IDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR--VNVQQCFEELV  173 (210)
Q Consensus       112 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~~~~~l~  173 (210)
                      ++    ..++|++|+.|-.+-.  .....+.+.++..+++++++++++..-  .+|..++..++
T Consensus       176 Lk----~igKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  176 LK----EIGKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HH----HhCCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence            54    4678999999988743  334555677888889999888887643  34555444444

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.63  E-value=8.1e-07  Score=66.20  Aligned_cols=90  Identities=18%  Similarity=0.086  Sum_probs=56.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCC----CceeeeEEEEEEECCeEEEEEEEeCCCcccccc------ch
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEELSP----TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LT   79 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~   79 (210)
                      ....-|.|+|++++|||+|+|.|++.  .|.-...    |.|...+...... +....+.++||+|......      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence            45677899999999999999999988  5532222    3333333222211 2356799999999543322      22


Q ss_pred             hhcccC--ccEEEEEEECCCcccHH
Q 028381           80 SSYYRG--AQGIIMVYDVTRRDTFT  102 (210)
Q Consensus        80 ~~~~~~--~d~~i~v~d~~~~~s~~  102 (210)
                      ...+..  ++++|+..+........
T Consensus        84 ~~~l~~llss~~i~n~~~~~~~~~~  108 (224)
T cd01851          84 LFALATLLSSVLIYNSWETILGDDL  108 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcccHHHH
Confidence            333344  78888888876554433

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.62  E-value=3.9e-06  Score=58.04  Aligned_cols=147  Identities=20%  Similarity=0.257  Sum_probs=78.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCC-Cc------------------
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTA-GQ------------------   72 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-g~------------------   72 (210)
                      ...+||++.|+|||||||++.++...--...+...|  +....+.-++...-+.+.|+. |.                  
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            356899999999999999998876322111122222  334444456666667777766 31                  


Q ss_pred             ---cccc----cchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH
Q 028381           73 ---ERFR----TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN  145 (210)
Q Consensus        73 ---~~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  145 (210)
                         +.+.    ......+..+|++|  +|---+..+  ....+...+.. ..+.+.|++.+..+.+. ++       ..+
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMEl--ks~~f~~~ve~-vl~~~kpliatlHrrsr-~P-------~v~  147 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMEL--KSKKFREAVEE-VLKSGKPLIATLHRRSR-HP-------LVQ  147 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhh--ccHHHHHHHHH-HhcCCCcEEEEEecccC-Ch-------HHH
Confidence               0111    11122234456554  443222222  11125555554 33567888888887764 22       122


Q ss_pred             HHHHhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          146 FAREYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       146 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      -..+.+.-++.   .+..|=+.++..++..+
T Consensus       148 ~ik~~~~v~v~---lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         148 RIKKLGGVYVF---LTPENRNRILNEILSVL  175 (179)
T ss_pred             HhhhcCCEEEE---EccchhhHHHHHHHHHh
Confidence            23333443333   45555557888877766

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.62  E-value=5.5e-08  Score=72.68  Aligned_cols=157  Identities=17%  Similarity=0.066  Sum_probs=90.6

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCc----------cccc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----------ERFR   76 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~   76 (210)
                      .+.+...+++++|.+++|||+|++.++..+-..  ..+..+.+.....+.+   .-.+.++|.||-          .++.
T Consensus       131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~  207 (320)
T KOG2486|consen  131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWD  207 (320)
T ss_pred             CCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHh
Confidence            446788999999999999999999998665322  1114444443333333   335778899991          1122


Q ss_pred             cchhhcccC---ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-----------ecHHH
Q 028381           77 TLTSSYYRG---AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-----------VTKKE  142 (210)
Q Consensus        77 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~  142 (210)
                      .+...++.+   ---+.+++|++.+-.  ........++.    ..++|+.+|.||+|....-.           +....
T Consensus       208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~--~~D~~~i~~~g----e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~  281 (320)
T KOG2486|consen  208 KFTKSYLLERENLVRVFLLVDASVPIQ--PTDNPEIAWLG----ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQG  281 (320)
T ss_pred             HhHHHHHHhhhhhheeeeeeeccCCCC--CCChHHHHHHh----hcCCCeEEeeehhhhhhhccccccCccccceeehhh
Confidence            222223322   224455666664322  11111333344    45799999999999742211           11112


Q ss_pred             HHHHHHHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028381          143 GINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       143 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (210)
                      ..+.......|++.+|+.++.|+++++-.+..
T Consensus       282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ccccceeccCCceeeecccccCceeeeeehhh
Confidence            22222233456788999999999887655543

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=2e-07  Score=78.14  Aligned_cols=116  Identities=25%  Similarity=0.346  Sum_probs=85.1

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCC------------C---CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDN------------F---EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      +.+.+..-+++++.+..-|||||+.+|....            |   .+...+-|.|.....+..-..++.++++|+|||
T Consensus         3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh   82 (887)
T KOG0467|consen    3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH   82 (887)
T ss_pred             CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence            3455677899999999999999999986331            2   222235566666555555557889999999999


Q ss_pred             cccccchhhcccCccEEEEEEECCCcccH---HHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028381           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTF---TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (210)
                      -.+.+......+-+|++++++|+...-.-   --+++.|.         .+.-.++|+||+|.
T Consensus        83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~---------~~~~~~lvinkidr  136 (887)
T KOG0467|consen   83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI---------EGLKPILVINKIDR  136 (887)
T ss_pred             cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH---------ccCceEEEEehhhh
Confidence            99999988888999999999998875433   23333332         22345889999994

>cd01858 NGP_1 NGP-1

Probab=98.58  E-value=4.1e-07  Score=64.04  Aligned_cols=91  Identities=13%  Similarity=0.030  Sum_probs=57.9

Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (210)
                      ..+..+|++++|+|+.++..-.. .. +...+..  ...++|+++|+||+|+...... ......+........+.+||+
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~-~~-i~~~l~~--~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~   78 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRC-KH-VEEYLKK--EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN   78 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccC-HH-HHHHHHh--ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence            34678999999999998743211 11 3333332  1345899999999999543221 111222222222335789999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028381          161 TRVNVQQCFEELVLKI  176 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~  176 (210)
                      .+.|++++++.+.+.+
T Consensus        79 ~~~~~~~L~~~l~~~~   94 (157)
T cd01858          79 NPFGKGSLIQLLRQFS   94 (157)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            9999999999997764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00092 GTP-binding protein YchF

Probab=98.58  E-value=2.7e-07  Score=72.87  Aligned_cols=81  Identities=22%  Similarity=0.114  Sum_probs=54.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCC--CceeeeEEEEEEECCe---------------EEEEEEEeCCCccc-
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNF-E-ELSP--TIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQER-   74 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~-~-~~~~--~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~-   74 (210)
                      +++.++|.|++|||||.+.|++... . ..++  |........  .+.+.               ...+.+.|.||... 
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v--~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g   80 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVV--NPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG   80 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEE--EechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence            7899999999999999999998765 2 2334  233333222  22221               24678889999433 


Q ss_pred             ------cccchhhcccCccEEEEEEECCC
Q 028381           75 ------FRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        75 ------~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                            ........++.+|+++.|++..+
T Consensus        81 As~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        81 ASKGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             hhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                  22234456789999999999753

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.58  E-value=1.2e-07  Score=74.92  Aligned_cols=57  Identities=21%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCCC-------ceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDNFEELSPT-------IGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      ++|+|.+|||||||||+|++.........       -.+|.....+.+++..   .++||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            78999999999999999997654322221       1234445555654332   478999976654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.58  E-value=4.4e-07  Score=63.75  Aligned_cols=84  Identities=15%  Similarity=0.078  Sum_probs=55.3

Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |++++|+|+.++.+....   ++..  ......++|+++|+||+|+.....+ .+....+....+..++.+||+++.|++
T Consensus         1 Dvvl~VvD~~~p~~~~~~---~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~   74 (155)
T cd01849           1 DVILEVLDARDPLGTRSP---DIER--VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIE   74 (155)
T ss_pred             CEEEEEEeccCCccccCH---HHHH--HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChh
Confidence            789999999987655432   2221  1122456899999999998533211 111112222334568999999999999


Q ss_pred             HHHHHHHHHH
Q 028381          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      ++++.+.+..
T Consensus        75 ~L~~~i~~~~   84 (155)
T cd01849          75 KKESAFTKQT   84 (155)
T ss_pred             hHHHHHHHHh
Confidence            9999987754

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.57  E-value=1.3e-07  Score=74.77  Aligned_cols=56  Identities=27%  Similarity=0.316  Sum_probs=39.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCCCce-------eeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDNFEELSPTIG-------VDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ++|+|++|||||||||+|.+..........+       +|.....+.+.+..   .++||||...+
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~  237 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP  237 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence            7999999999999999999765443333333       45555556564432   57899997543

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=1.1e-06  Score=71.85  Aligned_cols=136  Identities=14%  Similarity=0.123  Sum_probs=81.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ..++-++++||||+||||||+.|.......... ..|     ....+.+...++++.++|.  ...++ .....-+|.++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-----PiTvvsgK~RRiTflEcp~--Dl~~m-iDvaKIaDLVl  138 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-----PITVVSGKTRRITFLECPS--DLHQM-IDVAKIADLVL  138 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-----ceEEeecceeEEEEEeChH--HHHHH-HhHHHhhheeE
Confidence            356888999999999999999987442211111 111     0113466788999999993  22222 23345589999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCceecHHH----H-HHHHHH-hCCeEEEEccCC
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVTKKE----G-INFARE-YGCLFIECSAKT  161 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~----~-~~~~~~-~~~~~~~~Sa~~  161 (210)
                      +++|.+-....+.+.  ++..+..    .+.| ++-|+|+.|+-....-....    . +.|..- .|+.+|.+|...
T Consensus       139 LlIdgnfGfEMETmE--FLnil~~----HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         139 LLIDGNFGFEMETME--FLNILIS----HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             EEeccccCceehHHH--HHHHHhh----cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            999998776665554  4444443    2344 45677999984322111111    1 122222 267888888653

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.53  E-value=1.5e-07  Score=75.87  Aligned_cols=57  Identities=19%  Similarity=0.236  Sum_probs=50.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      ..+.|.+||.|||||||+||.|.+.+-..++.|+|.|.+..++.++..   +.|.|+||.
T Consensus       313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~---v~LCDCPGL  369 (562)
T KOG1424|consen  313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPS---VCLCDCPGL  369 (562)
T ss_pred             ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCC---ceecCCCCc
Confidence            369999999999999999999999999889899999999888877553   778899994

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.50  E-value=3.5e-07  Score=70.28  Aligned_cols=87  Identities=22%  Similarity=0.208  Sum_probs=56.4

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEE---------------CCeEEEEEEEeCCCccc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDV---------------GGKKLKLAIWDTAGQER   74 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~D~~g~~~   74 (210)
                      ....+++.|+|.|++|||||.|.|+.... +..+|....+...-.+.+               ......++++|++|.-.
T Consensus        17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            34678999999999999999999997765 344452222222222222               12345789999998322


Q ss_pred             -------cccchhhcccCccEEEEEEECCC
Q 028381           75 -------FRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        75 -------~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                             ........++.+|+++-|+++..
T Consensus        97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence                   22223345788999999988654

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.48  E-value=2e-06  Score=61.12  Aligned_cols=134  Identities=19%  Similarity=0.278  Sum_probs=65.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeC-CCc----------------------
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT-AGQ----------------------   72 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~----------------------   72 (210)
                      ||++.|+||+|||||++++...--....+..|  ++...+.-++.+.-+.+.|. .|.                      
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~   78 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL   78 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence            68999999999999999987432111111222  33333334555555666665 221                      


Q ss_pred             cccccchhhcc----cCccEEEEEEECC-CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC-CCCCCceecHHHHHHH
Q 028381           73 ERFRTLTSSYY----RGAQGIIMVYDVT-RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV-DKESERVVTKKEGINF  146 (210)
Q Consensus        73 ~~~~~~~~~~~----~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~  146 (210)
                      +.+.......+    ..+|  ++++|-- .-+....  . |...+.... +.++|++.++.+. +.+        .+..+
T Consensus        79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~~--~-F~~~v~~~l-~s~~~vi~vv~~~~~~~--------~l~~i  144 (168)
T PF03266_consen   79 ESFEEIGLPALRNALSSSD--LIVIDEIGKMELKSP--G-FREAVEKLL-DSNKPVIGVVHKRSDNP--------FLEEI  144 (168)
T ss_dssp             HHHHCCCCCCCHHHHHCCH--EEEE---STTCCC-C--H-HHHHHHHHH-CTTSEEEEE--SS--SC--------CHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCC--EEEEeccchhhhcCH--H-HHHHHHHHH-cCCCcEEEEEecCCCcH--------HHHHH
Confidence            11111111112    2344  7777722 2111111  1 444444333 3678888877776 432        24555


Q ss_pred             HHHhCCeEEEEccCCCCCH
Q 028381          147 AREYGCLFIECSAKTRVNV  165 (210)
Q Consensus       147 ~~~~~~~~~~~Sa~~~~~i  165 (210)
                      ....++.+++++..+.+.+
T Consensus       145 ~~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  145 KRRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             HTTTTSEEEE--TTTCCCH
T ss_pred             HhCCCcEEEEeChhHHhhH
Confidence            6666788998887776654

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.48  E-value=2.4e-06  Score=66.85  Aligned_cols=164  Identities=14%  Similarity=0.101  Sum_probs=97.3

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC----------C-----CceeeeEEEEEEECCe-------------
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS----------P-----TIGVDFKVKYVDVGGK-------------   60 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~----------~-----~~~~~~~~~~~~~~~~-------------   60 (210)
                      ++....+.|.+.|+.+.|||||+-.|..+...+-.          +     ..........+.+++.             
T Consensus       112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE  191 (527)
T COG5258         112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE  191 (527)
T ss_pred             cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence            34556789999999999999999888654321111          0     0111112222222221             


Q ss_pred             --------EEEEEEEeCCCccccccch-hhc-ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028381           61 --------KLKLAIWDTAGQERFRTLT-SSY-YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        61 --------~~~~~l~D~~g~~~~~~~~-~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  130 (210)
                              +.-+.|+|+.|++.+-... +.. =.+.|-.++++.+++.-+--.-..  +-..    ...+.|++|+.||+
T Consensus       192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH--Lgi~----~a~~lPviVvvTK~  265 (527)
T COG5258         192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH--LGIA----LAMELPVIVVVTKI  265 (527)
T ss_pred             HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh--hhhh----hhhcCCEEEEEEec
Confidence                    2357788999999876533 333 357899999999998765433222  1111    13468999999999


Q ss_pred             CCCCCceec--HHHHHHHH----------------------HHhC---CeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          131 DKESERVVT--KKEGINFA----------------------REYG---CLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       131 Dl~~~~~~~--~~~~~~~~----------------------~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      |+.....+.  .+++..+.                      -+.+   +|+|.+|+.+|+|++-+ +.+...+.++
T Consensus       266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL-~e~f~~Lp~r  340 (527)
T COG5258         266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL-DEFFLLLPKR  340 (527)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH-HHHHHhCCcc
Confidence            996443221  11111111                      1112   57999999999998764 4444444433

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.46  E-value=5.1e-07  Score=67.08  Aligned_cols=114  Identities=19%  Similarity=0.235  Sum_probs=73.7

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCc-------ccHHHHH-------HHHHHHHhhhccCCCCcEEE
Q 028381           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR-------DTFTNLS-------DVWAKEIDLYSTNQDCIKLL  125 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~-------~~~~~~~~~~~~~~~~p~iv  125 (210)
                      ..+.++++|.+|+..-+..|...+..+.++|+|+..+.-       .+-+.+.       ..|....     -..+.+|+
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRw-----L~tisvIl  274 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRW-----LRTISVIL  274 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhH-----HhhhheeE
Confidence            446789999999999999999999999999999997752       1222222       2222211     23467899


Q ss_pred             EEeCCCCCCC----------------------------ceecHH--HHHHHHH----Hh---------CCeEEEEccCCC
Q 028381          126 VGNKVDKESE----------------------------RVVTKK--EGINFAR----EY---------GCLFIECSAKTR  162 (210)
Q Consensus       126 v~nK~Dl~~~----------------------------~~~~~~--~~~~~~~----~~---------~~~~~~~Sa~~~  162 (210)
                      ..||.|+...                            ...+..  .++-+.+    ..         -+.+..+.|.+-
T Consensus       275 FLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDT  354 (379)
T KOG0099|consen  275 FLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDT  354 (379)
T ss_pred             EecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeech
Confidence            9999997311                            000111  1111111    11         133667888999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 028381          163 VNVQQCFEELVLKILD  178 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (210)
                      ++|..+|+...+.+.+
T Consensus       355 enIrrVFnDcrdiIqr  370 (379)
T KOG0099|consen  355 ENIRRVFNDCRDIIQR  370 (379)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998887754

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.46  E-value=3.7e-07  Score=68.97  Aligned_cols=58  Identities=28%  Similarity=0.334  Sum_probs=38.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------CceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-------TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      -.++|+|++|+|||||+|+|.+........       ...+|.....+.+++.    .++||||...+.
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~~  185 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEFG  185 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccccC
Confidence            368899999999999999999764322111       1224444555555432    688999975533

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.46  E-value=2.1e-07  Score=65.10  Aligned_cols=59  Identities=25%  Similarity=0.275  Sum_probs=34.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC------CCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNF------EELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      -.++|+|++|||||||+|.|.+...      +... ....+|.....+.++..   ..++||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            4688999999999999999997632      1111 12233334445555443   3667999965443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=2.3e-06  Score=65.89  Aligned_cols=143  Identities=18%  Similarity=0.137  Sum_probs=91.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc----------CCCC-----CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS----------DNFE-----ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      .-++|.-+|+..-|||||--.++.          .+|.     +....-|.++....+.++......-=.|+|||..|-.
T Consensus        53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK  132 (449)
T KOG0460|consen   53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK  132 (449)
T ss_pred             CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence            458999999999999999766641          1111     1111445555555455544445555669999998887


Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-Cce--ecHHHHHHHHHHhCC--
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-ERV--VTKKEGINFAREYGC--  152 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~--~~~~~~~~~~~~~~~--  152 (210)
                      ....-....|+.|+|+.++|..--+ .++ .+...++..   =..++|.+||.|+.+ ++.  +-..+++++...+++  
T Consensus       133 NMItGaaqMDGaILVVaatDG~MPQ-TrE-HlLLArQVG---V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G  207 (449)
T KOG0460|consen  133 NMITGAAQMDGAILVVAATDGPMPQ-TRE-HLLLARQVG---VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG  207 (449)
T ss_pred             HhhcCccccCceEEEEEcCCCCCcc-hHH-HHHHHHHcC---CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            7777778889999999999965322 222 222222211   135678889999973 332  234567777777764  


Q ss_pred             ---eEEEEccC
Q 028381          153 ---LFIECSAK  160 (210)
Q Consensus       153 ---~~~~~Sa~  160 (210)
                         |++.-||.
T Consensus       208 d~~PvI~GSAL  218 (449)
T KOG0460|consen  208 DNTPVIRGSAL  218 (449)
T ss_pred             CCCCeeecchh
Confidence               57776655

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.45  E-value=2.1e-06  Score=67.19  Aligned_cols=94  Identities=17%  Similarity=0.141  Sum_probs=55.8

Q ss_pred             EEEEEEEeCCCccccccc----hhhc--------ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028381           61 KLKLAIWDTAGQERFRTL----TSSY--------YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN  128 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~n  128 (210)
                      .+.+.++||||.......    ...+        -...+..++|+|++...  +.+.+ ...+...    . -+--+|.|
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~-~~~giIlT  267 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----V-GLTGIILT  267 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----C-CCCEEEEE
Confidence            467899999996442221    1111        12467889999999543  23322 1111111    1 23468899


Q ss_pred             CCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381          129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus       129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      |.|....    .-.+..+....+.|+..++  +|.+++++
T Consensus       268 KlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        268 KLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             CCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            9995422    2234556677799988888  77777665

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.42  E-value=6.9e-07  Score=61.73  Aligned_cols=79  Identities=15%  Similarity=0.126  Sum_probs=52.9

Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc
Q 028381           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      ...+..+|++++|+|+.++.+.... . +...+...  ..++|+++|+||+|+..+..  ...........+..++++||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~-~-l~~~l~~~--~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPP-D-LERYVKEV--DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCH-H-HHHHHHhc--cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            3457789999999999987654421 1 33333321  24689999999999854332  22334555566778999999


Q ss_pred             CCCCC
Q 028381          160 KTRVN  164 (210)
Q Consensus       160 ~~~~~  164 (210)
                      +++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98754

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK13796 GTPase YqeH; Provisional

Probab=98.41  E-value=4.6e-07  Score=72.36  Aligned_cols=56  Identities=20%  Similarity=0.244  Sum_probs=41.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN-----FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      .++.|+|.+|||||||+|+|....     ....+..+|+|.....+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            479999999999999999998543     1123446777777777776554   3689999963

>cd01856 YlqF YlqF

Probab=98.39  E-value=1e-06  Score=62.98  Aligned_cols=90  Identities=16%  Similarity=0.078  Sum_probs=60.7

Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEE
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC  157 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      .....+.++|++++|+|++++...... . +...+      .++|+++|+||+|+......  ....++....+..++.+
T Consensus        12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~-i~~~~------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~i   81 (171)
T cd01856          12 QIKEKLKLVDLVIEVRDARIPLSSRNP-L-LEKIL------GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFV   81 (171)
T ss_pred             HHHHHHhhCCEEEEEeeccCccCcCCh-h-hHhHh------cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence            445668899999999999876543221 1 21111      24689999999998533211  11222333345568999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q 028381          158 SAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ||+++.|++++...+...+.
T Consensus        82 Sa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          82 NAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             ECCCcccHHHHHHHHHHHHH
Confidence            99999999999999988763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.39  E-value=8.2e-07  Score=70.83  Aligned_cols=57  Identities=25%  Similarity=0.349  Sum_probs=42.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNF-----EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      .+++++|.+|||||||+|+|++...     ...+..+++|.....+.++..   +.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCC
Confidence            4899999999999999999997432     234446677776666665332   56899999543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.39  E-value=9.1e-07  Score=69.03  Aligned_cols=163  Identities=17%  Similarity=0.180  Sum_probs=92.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC----------------CC-C-------CceeeeE-------------EEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE----------------LS-P-------TIGVDFK-------------VKY   54 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~----------------~~-~-------~~~~~~~-------------~~~   54 (210)
                      =..++|.++|...+|||||+-.|+.+....                .+ .       ..+.+..             ..+
T Consensus       131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW  210 (641)
T KOG0463|consen  131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW  210 (641)
T ss_pred             ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence            356899999999999999987765432110                00 0       1111110             001


Q ss_pred             EEE-CCeEEEEEEEeCCCccccccchhhccc--CccEEEEEEECCCcc---cHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028381           55 VDV-GGKKLKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCIKLLVGN  128 (210)
Q Consensus        55 ~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p~ivv~n  128 (210)
                      +.+ ++...-++|+|++|++.|-.....-..  -.|..++++-++..-   +-+.+-     .    +..-.+|+++|++
T Consensus       211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLg-----L----ALaL~VPVfvVVT  281 (641)
T KOG0463|consen  211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLG-----L----ALALHVPVFVVVT  281 (641)
T ss_pred             eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhh-----h----hhhhcCcEEEEEE
Confidence            111 222345789999999887754433332  347777777766532   112211     1    1234689999999


Q ss_pred             CCCCCCCceecHHH--HHHHH--------------------------HHhCCeEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028381          129 KVDKESERVVTKKE--GINFA--------------------------REYGCLFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       129 K~Dl~~~~~~~~~~--~~~~~--------------------------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      |+|+...+.+....  ...+.                          .+.-+|+|.+|..+|.|++- +..++..+.-++
T Consensus       282 KIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L-LkmFLNlls~R~  360 (641)
T KOG0463|consen  282 KIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL-LKMFLNLLSLRR  360 (641)
T ss_pred             eeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-HHHHHhhcCccc
Confidence            99986554433221  11111                          12235789999999999875 445555554444


Q ss_pred             Cccc
Q 028381          181 SLLA  184 (210)
Q Consensus       181 ~~~~  184 (210)
                      +..+
T Consensus       361 ~~~E  364 (641)
T KOG0463|consen  361 QLNE  364 (641)
T ss_pred             cccc
Confidence            4433

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.38  E-value=1.9e-06  Score=66.01  Aligned_cols=95  Identities=13%  Similarity=0.076  Sum_probs=56.7

Q ss_pred             EEEEEEEeCCCccccccchhh-------c-----ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028381           61 KLKLAIWDTAGQERFRTLTSS-------Y-----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN  128 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~-------~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~n  128 (210)
                      .+.+.++||||..........       .     -..+|.+++|+|++..  .+.+.. ...+...    . -+--+|.|
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~-~~~f~~~----~-~~~g~IlT  225 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQ-AKVFNEA----V-GLTGIILT  225 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHH-HHHHHhh----C-CCCEEEEE
Confidence            467899999996553332111       1     1237999999999743  233322 2221211    1 13468899


Q ss_pred             CCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381          129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      |.|....    .-.+..+....+.|+.+++  +|.+++++-
T Consensus       226 KlDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       226 KLDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             ccCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            9997433    2234555667789988887  677776653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.37  E-value=2.9e-06  Score=65.29  Aligned_cols=91  Identities=18%  Similarity=0.098  Sum_probs=62.0

Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEE
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC  157 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      .....+..+|++++|+|+.++.+.....  +...+      .+.|+++|.||+|+.+....  +.........+.+++.+
T Consensus        14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l------~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~i   83 (276)
T TIGR03596        14 EIKEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR------GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAI   83 (276)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH------CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEE
Confidence            3455678999999999998775533221  22222      25799999999998533211  11122223346678999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHc
Q 028381          158 SAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ||+++.|++++.+.+.+.+.+
T Consensus        84 Sa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        84 NAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             ECCCcccHHHHHHHHHHHHHH
Confidence            999999999999998887754

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.36  E-value=6.6e-07  Score=70.27  Aligned_cols=94  Identities=14%  Similarity=0.128  Sum_probs=55.6

Q ss_pred             EEEEEEeCCCccccccc----hhhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      +.+.++||+|.......    ...+  ....|.+++|+|+............+..       ..+ +--+|.||.|....
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~-------~~~-~~giIlTKlD~~~~  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNE-------AVG-IDGVILTKVDADAK  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHh-------cCC-CCEEEEeeecCCCC
Confidence            45899999996543221    1111  2257889999998765422211111211       112 24688999997532


Q ss_pred             ceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381          136 RVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      --    .+..++...+.|+.+++  +|.+++++.
T Consensus       295 ~G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        295 GG----AALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             cc----HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence            21    24455556789988887  688887764

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.35  E-value=1.4e-05  Score=65.35  Aligned_cols=85  Identities=14%  Similarity=0.183  Sum_probs=57.0

Q ss_pred             EEEEEEeCCCc-------------cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028381           62 LKLAIWDTAGQ-------------ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN  128 (210)
Q Consensus        62 ~~~~l~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~n  128 (210)
                      .++.++|+||.             +....+..++..+.+++|+|+--...+..-..   .-..+. .....+..-|+|.+
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSn---VTDLVs-q~DP~GrRTIfVLT  487 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSI---VTDLVS-QMDPHGRRTIFVLT  487 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhh---HHHHHH-hcCCCCCeeEEEEe
Confidence            36789999992             12233556677899999999875543332222   112222 23455677899999


Q ss_pred             CCCCCCCceecHHHHHHHHHHh
Q 028381          129 KVDKESERVVTKKEGINFAREY  150 (210)
Q Consensus       129 K~Dl~~~~~~~~~~~~~~~~~~  150 (210)
                      |.|+.+.+..++..++.+....
T Consensus       488 KVDlAEknlA~PdRI~kIleGK  509 (980)
T KOG0447|consen  488 KVDLAEKNVASPSRIQQIIEGK  509 (980)
T ss_pred             ecchhhhccCCHHHHHHHHhcC
Confidence            9999988888888888887644

>PRK01889 GTPase RsgA; Reviewed

Probab=98.34  E-value=3.9e-06  Score=66.84  Aligned_cols=86  Identities=10%  Similarity=0.013  Sum_probs=57.4

Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (210)
                      .+..++|.+++|+++..+.....+.. ++..+.    ..+++.+||+||+||.+......+....+  ..+.+++.+|++
T Consensus       108 ~iaANvD~vliV~s~~p~~~~~~ldr-~L~~a~----~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~  180 (356)
T PRK01889        108 LIAANVDTVFIVCSLNHDFNLRRIER-YLALAW----ESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSAL  180 (356)
T ss_pred             eEEEeCCEEEEEEecCCCCChhHHHH-HHHHHH----HcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECC
Confidence            34688999999999975444433333 444443    34677799999999964311111112222  346789999999


Q ss_pred             CCCCHHHHHHHHH
Q 028381          161 TRVNVQQCFEELV  173 (210)
Q Consensus       161 ~~~~i~~~~~~l~  173 (210)
                      ++.|++++..++.
T Consensus       181 ~g~gl~~L~~~L~  193 (356)
T PRK01889        181 DGEGLDVLAAWLS  193 (356)
T ss_pred             CCccHHHHHHHhh
Confidence            9999999888774

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.33  E-value=7.2e-07  Score=70.01  Aligned_cols=161  Identities=17%  Similarity=0.128  Sum_probs=96.7

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCC------------------------------CCCCCCCceeeeEEEEEEEC
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN------------------------------FEELSPTIGVDFKVKYVDVG   58 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~------------------------------~~~~~~~~~~~~~~~~~~~~   58 (210)
                      .+....++++|+|+..+||||+-..++...                              .......-+.+...-...+.
T Consensus        74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE  153 (501)
T KOG0459|consen   74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE  153 (501)
T ss_pred             CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence            345677999999999999999866553210                              00111122223333333444


Q ss_pred             CeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      ...-.+++.|.||+..+......-..++|..++|+++...+   -|+.--+ -...........-...|+++||+|-+..
T Consensus       154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQ-TREha~Lakt~gv~~lVv~vNKMddPtv  232 (501)
T KOG0459|consen  154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQ-TREHAMLAKTAGVKHLIVLINKMDDPTV  232 (501)
T ss_pred             ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccc-hhHHHHHHHhhccceEEEEEEeccCCcc
Confidence            45567899999999999887777788899999999986532   2222211 1111111111223467899999996422


Q ss_pred             c------eecHHHHHHHHHHhC------CeEEEEccCCCCCHHHHHH
Q 028381          136 R------VVTKKEGINFAREYG------CLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus       136 ~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +      ....+....+....|      ..++++|..+|.++.+-..
T Consensus       233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            1      111222333444333      3499999999999988664

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=1.2e-05  Score=59.62  Aligned_cols=156  Identities=24%  Similarity=0.337  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCC--cHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEE--EEEEEeCCCccccccchhhcccCccEE
Q 028381           15 FKLLMIGDSGV--GKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKL--KLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        15 ~ki~i~G~~~~--GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .-++++|.+|+  ||.+|+.+|...+|..... ...++++-..  ++++.+  .+.+.-.+--.++.-..........++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~~~a~pl~a~   82 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNAEIAEPLQAF   82 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCcccccceeeE
Confidence            45789999998  9999999999888765444 3333343333  232221  122111111011110011122345789


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC----------------------------------
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE----------------------------------  135 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------------------------------  135 (210)
                      ++|||++....+..+.. |+......   .--.++-++||.|....                                  
T Consensus        83 vmvfdlse~s~l~alqd-wl~htdin---sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisete  158 (418)
T KOG4273|consen   83 VMVFDLSEKSGLDALQD-WLPHTDIN---SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETE  158 (418)
T ss_pred             EEEEeccchhhhHHHHh-hccccccc---cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccc
Confidence            99999999999998888 87654431   11234677899996311                                  


Q ss_pred             ----------ceecHHHHHHHHHHhCCeEEEEccCC------------CCCHHHHHHHHHHHH
Q 028381          136 ----------RVVTKKEGINFAREYGCLFIECSAKT------------RVNVQQCFEELVLKI  176 (210)
Q Consensus       136 ----------~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~l~~~~  176 (210)
                                .........+|+.++++.+++.++.+            ..|++.+|..+...+
T Consensus       159 gssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm  221 (418)
T KOG4273|consen  159 GSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM  221 (418)
T ss_pred             cccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence                      00112346788899999999998843            236777777776544

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.32  E-value=5e-06  Score=75.68  Aligned_cols=111  Identities=19%  Similarity=0.208  Sum_probs=65.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCC-----C--CceeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhh
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDNFEELS-----P--TIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------RFRTLTSS   81 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~   81 (210)
                      .+|+|++|+||||++.+- +..++-..     .  ..+.+..+..+ +..   .-.++|++|.-        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-f~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-FTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-ecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            589999999999999887 34443211     0  12222222222 222   24588999922        12234555


Q ss_pred             cc---------cCccEEEEEEECCCccc-----H----HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           82 YY---------RGAQGIIMVYDVTRRDT-----F----TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        82 ~~---------~~~d~~i~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      ++         +..||+|+++|+.+--.     .    ..++. .+..+.. ......|+.|+.||+|+..
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~-rl~el~~-~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQ-RLQELRE-QLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHH-HHHHHHH-HhCCCCCEEEEEecchhhc
Confidence            54         35799999999775321     1    12222 2333333 2355799999999999853

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.30  E-value=3.4e-06  Score=59.45  Aligned_cols=65  Identities=14%  Similarity=0.149  Sum_probs=37.6

Q ss_pred             EEEEEEEeCCCccccccchhh--------cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028381           61 KLKLAIWDTAGQERFRTLTSS--------YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (210)
                      .....++|++|..........        ..-..|.++.++|+..-.........+...+..       .=+||.||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-------ad~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-------ADRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-------CCEEEEecccC
Confidence            456788999996544433322        233578999999976533221111223333332       12678999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK13796 GTPase YqeH; Provisional

Probab=98.27  E-value=7.4e-06  Score=65.51  Aligned_cols=84  Identities=23%  Similarity=0.281  Sum_probs=57.0

Q ss_pred             ccCcc-EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH----HHHhCC---eE
Q 028381           83 YRGAQ-GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF----AREYGC---LF  154 (210)
Q Consensus        83 ~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~---~~  154 (210)
                      +...+ .+++|+|+.+...-      |...+..+.  .+.|+++|+||+|+... ....+.+..|    +...++   .+
T Consensus        66 i~~~~~lIv~VVD~~D~~~s------~~~~L~~~~--~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v  136 (365)
T PRK13796         66 IGDSDALVVNVVDIFDFNGS------WIPGLHRFV--GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDV  136 (365)
T ss_pred             hcccCcEEEEEEECccCCCc------hhHHHHHHh--CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcE
Confidence            34444 89999999874421      444444432  25789999999999543 2223333333    445565   58


Q ss_pred             EEEccCCCCCHHHHHHHHHHH
Q 028381          155 IECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       155 ~~~Sa~~~~~i~~~~~~l~~~  175 (210)
                      +.+||+++.|++++++.+.+.
T Consensus       137 ~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        137 VLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999765

>PRK00098 GTPase RsgA; Reviewed

Probab=98.27  E-value=2.1e-06  Score=66.76  Aligned_cols=57  Identities=28%  Similarity=0.294  Sum_probs=37.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCc-------eeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTI-------GVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      ..++++|++|+|||||+|.|.+..........       .+|.....+.+++.   ..++||||...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            35889999999999999999976543222211       13333444444433   36789999754

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.25  E-value=2.4e-06  Score=66.15  Aligned_cols=59  Identities=24%  Similarity=0.262  Sum_probs=38.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------CceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-------TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      -.++++|++|+|||||+|.|.+........       ...++.....+.+...   ..++|+||...+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            578999999999999999999765332211       1123444444555432   2588999986543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.22  E-value=9.6e-06  Score=62.81  Aligned_cols=100  Identities=21%  Similarity=0.144  Sum_probs=65.4

Q ss_pred             CCCccc-cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q 028381           69 TAGQER-FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA  147 (210)
Q Consensus        69 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  147 (210)
                      .|||-. ........+..+|++++|+|+.++.+.... . +...+      .+.|+++|.||+|+.+...  .+....+.
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~-~-l~~~~------~~kp~iiVlNK~DL~~~~~--~~~~~~~~   76 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP-M-IDKII------GNKPRLLILNKSDLADPEV--TKKWIEYF   76 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh-h-HHHHh------CCCCEEEEEEchhcCCHHH--HHHHHHHH
Confidence            456432 122345567899999999999887553321 1 21211      1579999999999853311  12222223


Q ss_pred             HHhCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          148 REYGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       148 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ...+.+++.+|++++.|++++.+.+...+.+
T Consensus        77 ~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         77 EEQGIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             HHcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            3446778999999999999999988887644

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.17  E-value=1.7e-05  Score=64.19  Aligned_cols=86  Identities=13%  Similarity=0.088  Sum_probs=47.8

Q ss_pred             EEEEEEEeCCCccccccch----hhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           61 KLKLAIWDTAGQERFRTLT----SSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      .+.+.|+||+|.......+    ..+  ....+-+++|+|+.-.........    .+..    .-.+--+|.||.|...
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~----~F~~----~~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAK----AFKD----SVDVGSVIITKLDGHA  253 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHH----HHHh----ccCCcEEEEECccCCC
Confidence            4678999999965443211    111  235688999999876543322222    1211    1124578899999742


Q ss_pred             CceecHHHHHHHHHHhCCeEEEEc
Q 028381          135 ERVVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~S  158 (210)
                      .    .-.+.......+.|+.+++
T Consensus       254 r----gG~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       254 K----GGGALSAVAATKSPIIFIG  273 (429)
T ss_pred             C----ccHHhhhHHHHCCCeEEEc
Confidence            2    1123444455566655554

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.16  E-value=4.6e-06  Score=63.81  Aligned_cols=58  Identities=26%  Similarity=0.323  Sum_probs=38.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC------CCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN------FEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      -.+++|++|+|||||+|+|....      .+... ..-.+|.....+.+++..   .++||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            56788999999999999998642      22222 133445555666764332   356999976654

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=5.6e-06  Score=68.24  Aligned_cols=121  Identities=15%  Similarity=0.174  Sum_probs=83.4

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCC-----CCC------------CCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-----EEL------------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      +..+.-+|.+.-+-.+||||+-++.+...-     .++            ...-+.+....-....+.++.++++|||||
T Consensus        35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH  114 (721)
T KOG0465|consen   35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH  114 (721)
T ss_pred             chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence            335677899999999999999988763211     010            012233333333444556889999999999


Q ss_pred             cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028381           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (210)
                      ..+.-.....++--|+.|+|+++...-.-+...- |...-     ..++|.+-.+||+|.....
T Consensus       115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV-~rQ~~-----ry~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETV-WRQMK-----RYNVPRICFINKMDRMGAS  172 (721)
T ss_pred             eeEEEEehhhhhhccCeEEEEEcccceehhhHHH-HHHHH-----hcCCCeEEEEehhhhcCCC
Confidence            8888777777888899999999876644333332 54332     3579999999999986553

>PRK13695 putative NTPase; Provisional

Probab=98.15  E-value=8.5e-05  Score=53.17  Aligned_cols=80  Identities=11%  Similarity=0.001  Sum_probs=43.9

Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028381           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (210)
                      .+..+++  +++|--.  ..+.....+...+.... ..+.|++++.++....       .....+....++.++++   +
T Consensus        93 ~l~~~~~--lllDE~~--~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~---~  157 (174)
T PRK13695         93 ALEEADV--IIIDEIG--KMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL---T  157 (174)
T ss_pred             ccCCCCE--EEEECCC--cchhhhHHHHHHHHHHH-hCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---c
Confidence            3445666  6777311  11222222444444433 4568999988875321       12334445556667776   4


Q ss_pred             CCCHHHHHHHHHHHH
Q 028381          162 RVNVQQCFEELVLKI  176 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (210)
                      .+|=+++.+.+++++
T Consensus       158 ~~~r~~~~~~~~~~~  172 (174)
T PRK13695        158 PENRDSLPFEILNRL  172 (174)
T ss_pred             chhhhhHHHHHHHHH
Confidence            455567788877765

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.14  E-value=2.5e-06  Score=66.98  Aligned_cols=59  Identities=24%  Similarity=0.338  Sum_probs=51.3

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      -...+++.|+|.|++||||+||+|.......+..++|.|.....+.++.   .+.|.|.||.
T Consensus       249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCce
Confidence            4677999999999999999999999999888888889888888777655   3788899994

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.09  E-value=0.00011  Score=57.66  Aligned_cols=97  Identities=14%  Similarity=0.153  Sum_probs=57.4

Q ss_pred             EEEEEEeCCCccccccchhhccc--------CccEEEEEEECCCcccHHH-HHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYR--------GAQGIIMVYDVTRRDTFTN-LSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (210)
                      +...++++.|.....+....+..        ..|++|-|+|+.+-..... ........+..       -=+|++||.|+
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-------AD~ivlNK~Dl  157 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-------ADVIVLNKTDL  157 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-------CcEEEEecccC
Confidence            45667888886665444433332        3588999999887544322 22323333332       12789999999


Q ss_pred             CCCceecHHHHHHHHHHh--CCeEEEEccCCCCCHHHH
Q 028381          133 ESERVVTKKEGINFAREY--GCLFIECSAKTRVNVQQC  168 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~  168 (210)
                      ..+..  .+..+...+..  .++++.++. .+.+..++
T Consensus       158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~l  192 (323)
T COG0523         158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAEL  192 (323)
T ss_pred             CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHh
Confidence            87664  34445555554  466888777 33344333

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=2.4e-05  Score=62.33  Aligned_cols=142  Identities=14%  Similarity=0.115  Sum_probs=72.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCC--CceeeeE---------------EEEE-EE-----------CCeE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNF-E-ELSP--TIGVDFK---------------VKYV-DV-----------GGKK   61 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~-~-~~~~--~~~~~~~---------------~~~~-~~-----------~~~~   61 (210)
                      ..-.++|+|++|+||||++..|...-. . ....  ....+.+               ...+ ..           ....
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~  215 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN  215 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence            345788999999999999998864311 0 0000  0000000               0000 01           1123


Q ss_pred             EEEEEEeCCCccccccchh---hcc---cCccEEEEEEECCCcc-cHHHHHHHHHHHHhhhccCC-CCcEEEEEeCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTS---SYY---RGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQ-DCIKLLVGNKVDKE  133 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~---~~~---~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~  133 (210)
                      ..+.++||+|.........   ..+   ....-.++|++++... ....+.+.|...... .... .-+-=+|.||.|..
T Consensus       216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~-p~~~~~~~~~~I~TKlDEt  294 (374)
T PRK14722        216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQ-PKAALPDLAGCILTKLDEA  294 (374)
T ss_pred             CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcc-cccccCCCCEEEEeccccC
Confidence            5788999999665443211   112   2234568888887643 333332212221110 0000 01224778999964


Q ss_pred             CCceecHHHHHHHHHHhCCeEEEEcc
Q 028381          134 SERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      .    ..-.+..+....+.|+.+++.
T Consensus       295 ~----~~G~~l~~~~~~~lPi~yvt~  316 (374)
T PRK14722        295 S----NLGGVLDTVIRYKLPVHYVST  316 (374)
T ss_pred             C----CccHHHHHHHHHCcCeEEEec
Confidence            2    233456677777888666654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.00  E-value=3.6e-05  Score=55.03  Aligned_cols=84  Identities=15%  Similarity=0.155  Sum_probs=44.9

Q ss_pred             EEEEEEEeCCCcccccc----chhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           61 KLKLAIWDTAGQERFRT----LTSSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      ...+.++|++|......    ....+.  ...+.+++|+|+......  . + +...+...   .+ ..-+|.||.|...
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~--~-~-~~~~~~~~---~~-~~~viltk~D~~~  153 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA--V-N-QAKAFNEA---LG-ITGVILTKLDGDA  153 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH--H-H-HHHHHHhh---CC-CCEEEEECCcCCC
Confidence            34578899999753321    111111  248999999998644322  2 2 22222221   12 2457779999743


Q ss_pred             CceecHHHHHHHHHHhCCeEEE
Q 028381          135 ERVVTKKEGINFAREYGCLFIE  156 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      ..    ..+...+...+.|+..
T Consensus       154 ~~----g~~~~~~~~~~~p~~~  171 (173)
T cd03115         154 RG----GAALSIRAVTGKPIKF  171 (173)
T ss_pred             Cc----chhhhhHHHHCcCeEe
Confidence            22    2233355666766543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.98  E-value=0.00011  Score=56.34  Aligned_cols=94  Identities=22%  Similarity=0.150  Sum_probs=67.2

Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEE
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC  157 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      +.+..+.++|-.++|+.+.+|+--....+.++-...    ..++.-+|+.||+|+........++...+....+.+++.+
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae----~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~  147 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE----AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV  147 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH----HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence            344455668888888888888754444443444443    3455568889999997665554455677777889999999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 028381          158 SAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~  175 (210)
                      |++++.+++++..++...
T Consensus       148 s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         148 SAKNGDGLEELAELLAGK  165 (301)
T ss_pred             cCcCcccHHHHHHHhcCC
Confidence            999999999987766543

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.98  E-value=4.2e-05  Score=57.62  Aligned_cols=119  Identities=22%  Similarity=0.349  Sum_probs=71.3

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEEEECCeEEEEEEEeCCCc-------cccccc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYVDVGGKKLKLAIWDTAGQ-------ERFRTL   78 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~~~~~   78 (210)
                      ..-.|+|+-+|..|.|||||+..|++-.+.....     ............-.+..++++++||.|.       +.+..+
T Consensus        39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i  118 (406)
T KOG3859|consen   39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI  118 (406)
T ss_pred             cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence            3567999999999999999999999877643222     2222222223333677889999999981       111111


Q ss_pred             -----------hhh---------cc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           79 -----------TSS---------YY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        79 -----------~~~---------~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                                 ...         .+  ...++++|.+..+- .++..+.......+     +..+.+|-|+-|.|-...
T Consensus       119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~L-----dskVNIIPvIAKaDtisK  191 (406)
T KOG3859|consen  119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKL-----DSKVNIIPVIAKADTISK  191 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHH-----hhhhhhHHHHHHhhhhhH
Confidence                       100         01  24577777777664 45555544333333     334556666678886443

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.95  E-value=4.7e-05  Score=55.56  Aligned_cols=86  Identities=17%  Similarity=0.141  Sum_probs=49.2

Q ss_pred             EEEEEEeCCCccccccc----hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      +.+.++||+|.......    +..++  ...+-+++|++++....-  +.. ........    + +-=+|.||.|....
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~--~~~-~~~~~~~~----~-~~~lIlTKlDet~~  155 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED--LEQ-ALAFYEAF----G-IDGLILTKLDETAR  155 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH--HHH-HHHHHHHS----S-TCEEEEESTTSSST
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH--HHH-HHHHhhcc----c-CceEEEEeecCCCC
Confidence            46899999996554322    11111  156788999998875432  222 22222221    1 12477999996422


Q ss_pred             ceecHHHHHHHHHHhCCeEEEEcc
Q 028381          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                          .-.+..+....+.|+-.++.
T Consensus       156 ----~G~~l~~~~~~~~Pi~~it~  175 (196)
T PF00448_consen  156 ----LGALLSLAYESGLPISYITT  175 (196)
T ss_dssp             ----THHHHHHHHHHTSEEEEEES
T ss_pred             ----cccceeHHHHhCCCeEEEEC
Confidence                23466777788988766653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.94  E-value=4.3e-05  Score=53.18  Aligned_cols=58  Identities=17%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028381           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD  131 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  131 (210)
                      .+.+.++|++|...   ....++..+|-++++...+-.+.+.-++  + ..+.       ..-++++||.|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k--~-~~~~-------~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIK--A-GIME-------IADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhh--h-hHhh-------hcCEEEEeCCC
Confidence            46788999988542   2234788899999998877322221111  1 1111       23478899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.92  E-value=5e-05  Score=60.64  Aligned_cols=86  Identities=13%  Similarity=0.132  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCccccccc----hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      +.+.|+||+|.......    ...++  ...+.+++|+|++-..  ..+.. .   +..+.. .+ +-=+|.||.|....
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~-i---~~~F~~-~~-idglI~TKLDET~k  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIE-I---ITNFKD-IH-IDGIVFTKFDETAS  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHH-H---HHHhcC-CC-CCEEEEEcccCCCC
Confidence            57899999996543221    22222  2356788898876332  12222 2   222211 11 23588999996432


Q ss_pred             ceecHHHHHHHHHHhCCeEEEEcc
Q 028381          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                          .-.+..++...+.|+..++.
T Consensus       393 ----~G~iLni~~~~~lPIsyit~  412 (436)
T PRK11889        393 ----SGELLKIPAVSSAPIVLMTD  412 (436)
T ss_pred             ----ccHHHHHHHHHCcCEEEEeC
Confidence                23456677778888666653

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.88  E-value=9.6e-05  Score=60.10  Aligned_cols=117  Identities=20%  Similarity=0.273  Sum_probs=78.1

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcC------------CCCCCCC---CceeeeEEEEEEE----------------C
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSD------------NFEELSP---TIGVDFKVKYVDV----------------G   58 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~------------~~~~~~~---~~~~~~~~~~~~~----------------~   58 (210)
                      .....-++-++.+..-|||||-..|...            .|.....   .-+.++...-+.+                +
T Consensus        15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d   94 (842)
T KOG0469|consen   15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD   94 (842)
T ss_pred             cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence            3445567889999999999999888522            1222211   2233333222221                5


Q ss_pred             CeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028381           59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (210)
                      +..+.++++|.||+..+.+...+.++-.|+.++|+|.-+.--.+.-.- +.+.+.+    .-+| +++.||.|.
T Consensus        95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETV-LrQA~~E----RIkP-vlv~NK~DR  162 (842)
T KOG0469|consen   95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV-LRQAIAE----RIKP-VLVMNKMDR  162 (842)
T ss_pred             CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHH-HHHHHHh----hccc-eEEeehhhH
Confidence            567899999999999999999999999999999999877643322211 3333332    2346 788999996

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.79  E-value=0.0004  Score=54.53  Aligned_cols=96  Identities=10%  Similarity=0.151  Sum_probs=51.6

Q ss_pred             EEEEEEeCCCccccccchhhccc--------CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYR--------GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      ....++++.|.....++...++.        ..+++|.|+|+.+-.....-.......+..       -=+|+.||+|+.
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~  163 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA  163 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence            45577899997665554444321        248899999987533211111112222221       127889999987


Q ss_pred             CCceecHHHHHHHHHHhC--CeEEEEccCCCCCHHHHH
Q 028381          134 SERVVTKKEGINFAREYG--CLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~  169 (210)
                      ...    +.+....+..+  ++++.++ ........+|
T Consensus       164 ~~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        164 GEA----EKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             CHH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            532    34555555443  5566544 2223444443

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.79  E-value=0.00022  Score=59.06  Aligned_cols=135  Identities=13%  Similarity=0.170  Sum_probs=70.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC--------C----CCCCCCc--------eeeeEEEEEEE-----------CCeE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDN--------F----EELSPTI--------GVDFKVKYVDV-----------GGKK   61 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~--------~----~~~~~~~--------~~~~~~~~~~~-----------~~~~   61 (210)
                      ..-.|+|+|++|+||||++..|...-        .    .+.+...        +..........           ....
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~  428 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD  428 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence            34578899999999999998875321        0    0000000        00000000000           1124


Q ss_pred             EEEEEEeCCCccccccchhh---ccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028381           62 LKLAIWDTAGQERFRTLTSS---YYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (210)
                      +.+.|+||+|..........   .+.  .....++|++.+.  +...+.. ....+..     ..+.-+|+||.|...  
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~e-ii~~f~~-----~~~~gvILTKlDEt~--  498 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDE-VVRRFAH-----AKPQGVVLTKLDETG--  498 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHH-HHHHHHh-----hCCeEEEEecCcCcc--
Confidence            67899999996543321110   011  1234567777664  2333322 2222221     135679999999632  


Q ss_pred             eecHHHHHHHHHHhCCeEEEEcc
Q 028381          137 VVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                        ..-.+..+....+.++.+++.
T Consensus       499 --~lG~aLsv~~~~~LPI~yvt~  519 (559)
T PRK12727        499 --RFGSALSVVVDHQMPITWVTD  519 (559)
T ss_pred             --chhHHHHHHHHhCCCEEEEeC
Confidence              234566777788888766654

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.77  E-value=0.00018  Score=58.24  Aligned_cols=134  Identities=13%  Similarity=0.120  Sum_probs=69.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCcee---eeE---------------EEEEE-E-----------CCeE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGV---DFK---------------VKYVD-V-----------GGKK   61 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~---~~~---------------~~~~~-~-----------~~~~   61 (210)
                      ..-.|+++|++|+||||++..|.+..... .....+.   +.+               -..+. .           .-..
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            34589999999999999998776421000 0000000   000               00000 0           1122


Q ss_pred             EEEEEEeCCCcccccc----chhhcc--cCccEEEEEEECCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           62 LKLAIWDTAGQERFRT----LTSSYY--RGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      ..+.++||+|......    ....+.  ....-.++|+|++.. ..+..+..    .+.    ..+ +-=+|.||.|...
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~----~f~----~~~-~~~~I~TKlDEt~  340 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS----AYQ----GHG-IHGCIITKVDEAA  340 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH----Hhc----CCC-CCEEEEEeeeCCC
Confidence            4678899999554222    111221  223457788888843 33332222    121    111 2247899999643


Q ss_pred             CceecHHHHHHHHHHhCCeEEEEcc
Q 028381          135 ERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                          ..-.+..+....+.|+.+++.
T Consensus       341 ----~~G~~l~~~~~~~lPi~yvt~  361 (420)
T PRK14721        341 ----SLGIALDAVIRRKLVLHYVTN  361 (420)
T ss_pred             ----CccHHHHHHHHhCCCEEEEEC
Confidence                223456677788888766654

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.76  E-value=0.00051  Score=56.12  Aligned_cols=86  Identities=17%  Similarity=0.148  Sum_probs=48.4

Q ss_pred             EEEEEEeCCCccccccch----hh--cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLT----SS--YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      ..+.++||+|........    ..  .+..+|.+++|+|++...   .... ....+..   ..+ ..-+|.||.|....
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~-~a~~F~~---~l~-i~gvIlTKlD~~a~  247 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKN-QAKAFHE---AVG-IGGIIITKLDGTAK  247 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHH-HHHHHHh---cCC-CCEEEEecccCCCc
Confidence            368999999965543221    11  234678999999987653   2111 1111211   111 23577899996422


Q ss_pred             ceecHHHHHHHHHHhCCeEEEEcc
Q 028381          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                          .-.+.......+.|+.+++.
T Consensus       248 ----~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        248 ----GGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             ----ccHHHHHHHHHCcCEEEEec
Confidence                12355566677888666654

>TIGR00959 ffh signal recognition particle protein

Probab=97.76  E-value=0.00025  Score=57.74  Aligned_cols=86  Identities=16%  Similarity=0.152  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCccccccchh----hc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTS----SY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      +.+.++||+|.........    .+  .-..+.+++|+|+....   .... +...+...   -+ ..=+|.||.|....
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~-~a~~f~~~---v~-i~giIlTKlD~~~~  254 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVN-TAKTFNER---LG-LTGVVLTKLDGDAR  254 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHH-HHHHHHhh---CC-CCEEEEeCccCccc
Confidence            5689999999544322111    11  23578899999987542   2222 22222211   11 23577999995322


Q ss_pred             ceecHHHHHHHHHHhCCeEEEEcc
Q 028381          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                          .-.+..+....++|+.++..
T Consensus       255 ----~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       255 ----GGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ----ccHHHHHHHHHCcCEEEEeC
Confidence                12266777778888766655

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.72  E-value=0.00025  Score=56.58  Aligned_cols=156  Identities=16%  Similarity=0.152  Sum_probs=78.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEE-------------------EE----------CCeEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYV-------------------DV----------GGKKL   62 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~-------------------~~----------~~~~~   62 (210)
                      .-.|.++||.||||||-+-.|.....  ...+...-.+.....+                   ..          .-..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            45688999999999998766643322  1111111111111111                   00          11245


Q ss_pred             EEEEEeCCCccccccc----hhhcccC--ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCCCC
Q 028381           63 KLAIWDTAGQERFRTL----TSSYYRG--AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVDKESE  135 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~  135 (210)
                      .+.|+||.|.+.++..    ...++..  ..-+.+|++++...  ..+..    .+..+.   .+|+ =+|.||.|..  
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlke----i~~~f~---~~~i~~~I~TKlDET--  351 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKE----IIKQFS---LFPIDGLIFTKLDET--  351 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHH----HHHHhc---cCCcceeEEEccccc--
Confidence            7899999997766543    2233332  23455677766432  23322    233322   1222 3788999953  


Q ss_pred             ceecHHHHHHHHHHhCCeEEEEccCCC--CCHHHH-HHHHHHHHHcCCCc
Q 028381          136 RVVTKKEGINFAREYGCLFIECSAKTR--VNVQQC-FEELVLKILDTPSL  182 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~~-~~~l~~~~~~~~~~  182 (210)
                        -..-.........+.|+..++-=..  ++|... -.|+++.++.....
T Consensus       352 --~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~  399 (407)
T COG1419         352 --TSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFAN  399 (407)
T ss_pred             --CchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccccc
Confidence              2233445556667777555543222  222221 35666666554433

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.69  E-value=0.00016  Score=49.78  Aligned_cols=107  Identities=15%  Similarity=0.144  Sum_probs=59.0

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCC
Q 028381           18 LMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        18 ~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                      +.-|.+|+|||++.-.+...-......+...+...   ......+.+.++|+|+..  .......+..+|.++++.+.+.
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~   78 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP   78 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence            34578899999987665422111110111111110   000111678999999743  3334567888999999999864


Q ss_pred             cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           98 RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        98 ~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                       .++..... .+..+...  ....++.+|.|+.+..
T Consensus        79 -~s~~~~~~-~l~~l~~~--~~~~~~~lVvN~~~~~  110 (139)
T cd02038          79 -TSITDAYA-LIKKLAKQ--LRVLNFRVVVNRAESP  110 (139)
T ss_pred             -hHHHHHHH-HHHHHHHh--cCCCCEEEEEeCCCCH
Confidence             33443333 33333321  1345677999999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.69  E-value=0.00015  Score=59.11  Aligned_cols=86  Identities=15%  Similarity=0.151  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCccccccc----hhhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      +.+.++||+|.......    ...+  .-..+.+++|+|+....   .... ....+..   ..+ ..-+|.||.|....
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~-~a~~F~~---~~~-i~giIlTKlD~~~r  255 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVN-TAKAFNE---ALG-LTGVILTKLDGDAR  255 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHH-HHHHHHh---hCC-CCEEEEeCccCccc
Confidence            56899999995433221    1111  12567889999986532   2222 1222221   111 22477799996322


Q ss_pred             ceecHHHHHHHHHHhCCeEEEEcc
Q 028381          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      .    -.+.......+.|+.++..
T Consensus       256 g----G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        256 G----GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             c----cHHHHHHHHHCcCEEEEeC
Confidence            1    1256667777888766655

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.65  E-value=0.00043  Score=56.53  Aligned_cols=88  Identities=17%  Similarity=0.161  Sum_probs=49.0

Q ss_pred             EEEEEEEeCCCcccccc----chhhccc---CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           61 KLKLAIWDTAGQERFRT----LTSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~----~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      .+.+.|+||+|......    ....++.   ...-+++|++++-..  ..+.. ....+.    ..+ +--+|.||.|..
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~-~~~~f~----~~~-~~~vI~TKlDet  370 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKD-IYKHFS----RLP-LDGLIFTKLDET  370 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHH-HHHHhC----CCC-CCEEEEeccccc
Confidence            35789999999654431    2222333   234667778876432  22222 111121    111 225889999964


Q ss_pred             CCceecHHHHHHHHHHhCCeEEEEccC
Q 028381          134 SERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (210)
                      ..    .-.+..+....+.|+..++.=
T Consensus       371 ~~----~G~i~~~~~~~~lPv~yit~G  393 (424)
T PRK05703        371 SS----LGSILSLLIESGLPISYLTNG  393 (424)
T ss_pred             cc----ccHHHHHHHHHCCCEEEEeCC
Confidence            22    224677778889997766643

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=7.6e-05  Score=67.00  Aligned_cols=110  Identities=24%  Similarity=0.202  Sum_probs=62.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCC--CCC-----CceeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhh
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDNFEE--LSP-----TIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------RFRTLTSS   81 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~   81 (210)
                      -+|+|++|+||||++..-- ..|+.  ...     ..+ |..+.. .+   +-+-.++||.|..        .....|..
T Consensus       128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~~cdw-wf---~deaVlIDtaGry~~q~s~~~~~~~~W~~  201 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TRNCDW-WF---TDEAVLIDTAGRYITQDSADEVDRAEWLG  201 (1188)
T ss_pred             eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-CcccCc-cc---ccceEEEcCCcceecccCcchhhHHHHHH
Confidence            4788999999999886543 22211  111     122 222221 12   2235678998821        22234554


Q ss_pred             c---------ccCccEEEEEEECCCccc---------HHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           82 Y---------YRGAQGIIMVYDVTRRDT---------FTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        82 ~---------~~~~d~~i~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      +         .+..||+|+.+|+.+--+         ...++. -+.++.. ......|++|++||.|+..
T Consensus       202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~-RL~El~~-tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRA-RLQELRE-TLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHH-HHHHHHH-hhccCCceEEEEecccccc
Confidence            4         246799999999775321         111222 2334443 2356789999999999853

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.65  E-value=4.3e-05  Score=51.12  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .|+|.|++||||||+++.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999854

...

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.65  E-value=0.00031  Score=57.79  Aligned_cols=88  Identities=9%  Similarity=0.073  Sum_probs=45.7

Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      .+|+|=|+-+....+.... +...+..+......|+|++++-+-...-..-.......+-...++..+..+.....-+..
T Consensus       196 ~liLveDLPn~~~~d~~~~-f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK  274 (634)
T KOG1970|consen  196 KLILVEDLPNQFYRDDSET-FREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKK  274 (634)
T ss_pred             eEEEeeccchhhhhhhHHH-HHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHH
Confidence            4577777776555543333 555555666667789999998765532221111112222233445444444444444444


Q ss_pred             HHHHHHHHH
Q 028381          168 CFEELVLKI  176 (210)
Q Consensus       168 ~~~~l~~~~  176 (210)
                      .+..|+...
T Consensus       275 ~L~ric~~e  283 (634)
T KOG1970|consen  275 FLKRICRIE  283 (634)
T ss_pred             HHHHHHHHh
Confidence            444444443

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.63  E-value=8e-05  Score=57.00  Aligned_cols=61  Identities=21%  Similarity=0.375  Sum_probs=40.8

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCCCceeeeEEEE-EEECCeEEEEEEEeCCCc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN-----FEELSPTIGVDFKVKY-VDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g~   72 (210)
                      .....++.|+|-||+|||||||++-...     ...+...+|.+..... +.+.. +-.+.+.||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~-rp~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH-RPPVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc-CCceEEecCCCc
Confidence            3467899999999999999999875432     2333345565555444 33322 234778899994

>PRK08118 topology modulation protein; Reviewed

Probab=97.62  E-value=5.1e-05  Score=53.97  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -||+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999754

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.62  E-value=0.00055  Score=57.17  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      =+++.||+||||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3566799999999999998754

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.61  E-value=0.00034  Score=47.83  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -.+++.|++|+|||++++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.61  E-value=5.3e-05  Score=54.37  Aligned_cols=23  Identities=30%  Similarity=0.680  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .||+|+|+|||||||+.+.|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999865

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.59  E-value=0.00054  Score=43.48  Aligned_cols=70  Identities=17%  Similarity=0.177  Sum_probs=44.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc-hhhcccCccEEEEEEEC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-TSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~   95 (210)
                      +++.|.+|+||||+...+...-....+..         ..++    .+.++|+++....... .......+|.++++++.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v---------~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRV---------LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeE---------EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            67889999999999988764321111111         1111    6788899986443321 14556678999999987


Q ss_pred             CCcc
Q 028381           96 TRRD   99 (210)
Q Consensus        96 ~~~~   99 (210)
                      ....
T Consensus        69 ~~~~   72 (99)
T cd01983          69 EALA   72 (99)
T ss_pred             chhh
Confidence            7543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.57  E-value=6.3e-05  Score=54.44  Aligned_cols=23  Identities=17%  Similarity=0.352  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .=|+|+||+|||||||+++|...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            34889999999999999999865

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.57  E-value=0.0003  Score=56.06  Aligned_cols=87  Identities=10%  Similarity=0.088  Sum_probs=47.5

Q ss_pred             EEEEEEEeCCCccccccch----hhccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           61 KLKLAIWDTAGQERFRTLT----SSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      .+.+.|+||+|........    ..+..  ..+.+++|.++..  ....+.. .   +..+. .. -+--+|.||.|...
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~-i---~~~f~-~l-~i~glI~TKLDET~  356 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMT-I---LPKLA-EI-PIDGFIITKMDETT  356 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHH-H---HHhcC-cC-CCCEEEEEcccCCC
Confidence            3678999999975433321    11222  3466677776532  2233322 2   22211 11 13358899999642


Q ss_pred             CceecHHHHHHHHHHhCCeEEEEcc
Q 028381          135 ERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      .    .-.+..+....+.|+..++.
T Consensus       357 ~----~G~~Lsv~~~tglPIsylt~  377 (407)
T PRK12726        357 R----IGDLYTVMQETNLPVLYMTD  377 (407)
T ss_pred             C----ccHHHHHHHHHCCCEEEEec
Confidence            2    23456667788888766664

>PRK07261 topology modulation protein; Provisional

Probab=97.54  E-value=7.1e-05  Score=53.43  Aligned_cols=22  Identities=41%  Similarity=0.625  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      +|+|+|++|||||||++.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998643

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.54  E-value=0.0004  Score=53.45  Aligned_cols=106  Identities=11%  Similarity=0.201  Sum_probs=64.8

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc-----------------
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-----------------   72 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----------------   72 (210)
                      ...+.-+++++|++|.|||+++++|.....+.. ....            ..+.+..+..|..                 
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP  123 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA------------ERIPVVYVQMPPEPDERRFYSAILEALGAP  123 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC------------ccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence            445667899999999999999999996553321 1111            1123334444431                 


Q ss_pred             -------cccccchhhcccCccEEEEEEECCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028381           73 -------ERFRTLTSSYYRGAQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        73 -------~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (210)
                             ..........++...+=++++|--+.   .+...-+. ++..++...+.-.+|+|.||+.
T Consensus       124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~-~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQRE-FLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHH-HHHHHHHHhhccCCCeEEeccH
Confidence                   11122233456777888999993321   22333333 6666666677888999999864

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.53  E-value=7e-05  Score=51.59  Aligned_cols=21  Identities=29%  Similarity=0.566  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |+++|+||||||||++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999733

...

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.51  E-value=4.5e-05  Score=60.18  Aligned_cols=85  Identities=19%  Similarity=0.243  Sum_probs=56.3

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc--cchhhcccCcc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR--TLTSSYYRGAQ   87 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~~~~~~~~~~d   87 (210)
                      ....-|-|.|+|.|++||||+||.|-..+...+.|.+|.|--=..+.   -..++-|+|+||.....  +.....+   -
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt---LmkrIfLIDcPGvVyps~dset~ivL---k  376 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT---LMKRIFLIDCPGVVYPSSDSETDIVL---K  376 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH---HHhceeEecCCCccCCCCCchHHHHh---h
Confidence            34567899999999999999999999988888888666543111011   22357788999954322  2233332   3


Q ss_pred             EEEEEEECCCccc
Q 028381           88 GIIMVYDVTRRDT  100 (210)
Q Consensus        88 ~~i~v~d~~~~~s  100 (210)
                      ++|-|-.+.+++.
T Consensus       377 GvVRVenv~~pe~  389 (572)
T KOG2423|consen  377 GVVRVENVKNPED  389 (572)
T ss_pred             ceeeeeecCCHHH
Confidence            5666777777654

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.49  E-value=0.00072  Score=54.64  Aligned_cols=133  Identities=17%  Similarity=0.236  Sum_probs=68.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC-CC----------CCCC------------CceeeeEEEE-E-----EECCeEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDN-FE----------ELSP------------TIGVDFKVKY-V-----DVGGKKLKL   64 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~-~~----------~~~~------------~~~~~~~~~~-~-----~~~~~~~~~   64 (210)
                      ..-++|+|++||||||++..|.... ..          +.+.            ..+..+.... .     .+....+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3468899999999999998886321 00          0000            0000000000 0     001124567


Q ss_pred             EEEeCCCcccccc----chhhccc-----CccEEEEEEECCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           65 AIWDTAGQERFRT----LTSSYYR-----GAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        65 ~l~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      .++||+|......    .+..++.     ...-.++|+|++-.. ......    ..+.    ..+ +-=+|.||.|...
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~----~~f~----~~~-~~glIlTKLDEt~  373 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL----KAYE----SLN-YRRILLTKLDEAD  373 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH----HHhc----CCC-CCEEEEEcccCCC
Confidence            8999999643221    1222222     234678899988654 222221    1121    111 2358899999642


Q ss_pred             CceecHHHHHHHHHHhCCeEEEEcc
Q 028381          135 ERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      .    .-.+..+....+.|+..++.
T Consensus       374 ~----~G~il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        374 F----LGSFLELADTYSKSFTYLSV  394 (432)
T ss_pred             C----ccHHHHHHHHHCCCEEEEec
Confidence            2    22356667777888766654

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.49  E-value=0.00011  Score=54.07  Aligned_cols=27  Identities=26%  Similarity=0.383  Sum_probs=22.3

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      +....-|+|+|++|||||||++.|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            345566888999999999999999754

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.48  E-value=5.3e-05  Score=53.87  Aligned_cols=47  Identities=26%  Similarity=0.344  Sum_probs=29.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKL   62 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (210)
                      .=+++.||+|+|||||++.|+... .-......+|........+|..+
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY   51 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDY   51 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCcee
Confidence            347888999999999999999765 21111233333333344455444

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.47  E-value=0.00065  Score=58.81  Aligned_cols=135  Identities=15%  Similarity=0.129  Sum_probs=70.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-CCCC-C--CceeeeE---------------EEEEE-E-----------CCeEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNF-EELS-P--TIGVDFK---------------VKYVD-V-----------GGKKLK   63 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~-~~~~-~--~~~~~~~---------------~~~~~-~-----------~~~~~~   63 (210)
                      --|+|+|+.|+||||.+..|..... .... .  -...+.+               ...+. .           ....+.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            4688999999999999988874321 0000 0  0000000               00000 0           112346


Q ss_pred             EEEEeCCCcccccc----chhhc--ccCccEEEEEEECCCc-ccHHHHHHHHHHHHhhhccCCC-CcEEEEEeCCCCCCC
Q 028381           64 LAIWDTAGQERFRT----LTSSY--YRGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQD-CIKLLVGNKVDKESE  135 (210)
Q Consensus        64 ~~l~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~  135 (210)
                      +.|+||+|......    ....+  ....+-.++|+|++.. +.+..+..       .|..... -+-=+|.||.|....
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~-------~f~~~~~~~i~glIlTKLDEt~~  338 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH-------AYRHGAGEDVDGCIITKLDEATH  338 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH-------HHhhcccCCCCEEEEeccCCCCC
Confidence            88999999443222    11111  2234567899998743 22333322       2111110 122478999996432


Q ss_pred             ceecHHHHHHHHHHhCCeEEEEccC
Q 028381          136 RVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (210)
                          .-.+..+....+.|+.+++.=
T Consensus       339 ----~G~iL~i~~~~~lPI~yit~G  359 (767)
T PRK14723        339 ----LGPALDTVIRHRLPVHYVSTG  359 (767)
T ss_pred             ----ccHHHHHHHHHCCCeEEEecC
Confidence                223566677788887766543

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.46  E-value=0.00047  Score=39.18  Aligned_cols=44  Identities=23%  Similarity=0.216  Sum_probs=25.2

Q ss_pred             CccEEEEEEECCCcc--cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028381           85 GAQGIIMVYDVTRRD--TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD  131 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  131 (210)
                      -.++++|++|++...  +.+.-.. ++..++.  ...++|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~-L~~~ik~--~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLS-LFKEIKP--LFPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHH-HHHHHHH--HTTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHH-HHHHHHH--HcCCCCEEEEEeccC
Confidence            368999999998754  3443333 4444543  345799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.43  E-value=9.7e-05  Score=52.26  Aligned_cols=22  Identities=18%  Similarity=0.576  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999855

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.43  E-value=0.0023  Score=51.61  Aligned_cols=87  Identities=13%  Similarity=0.120  Sum_probs=48.4

Q ss_pred             EEEEEEEeCCCcccccc----chhhcccCc--c-EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           61 KLKLAIWDTAGQERFRT----LTSSYYRGA--Q-GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      .+.+.++||+|......    ....++...  + -.++|+|++...  ..+..    .+..+...  -+-=+|.||.|..
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~----~~~~~~~~--~~~~~I~TKlDet  325 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKE----IFHQFSPF--SYKTVIFTKLDET  325 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHH----HHHHhcCC--CCCEEEEEeccCC
Confidence            46789999999654332    112222322  3 578999988652  22222    22222111  1235889999964


Q ss_pred             CCceecHHHHHHHHHHhCCeEEEEcc
Q 028381          134 SERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      ..    .-.+..+....+.|+..++.
T Consensus       326 ~~----~G~~l~~~~~~~~Pi~yit~  347 (388)
T PRK12723        326 TC----VGNLISLIYEMRKEVSYVTD  347 (388)
T ss_pred             Cc----chHHHHHHHHHCCCEEEEeC
Confidence            32    22355666777888666653

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.43  E-value=0.0029  Score=50.23  Aligned_cols=99  Identities=16%  Similarity=0.201  Sum_probs=53.0

Q ss_pred             EEEEEEeCCCccccccchhhcc-------cCccEEEEEEECCCccc--H--------------------HHHHHHHHHHH
Q 028381           62 LKLAIWDTAGQERFRTLTSSYY-------RGAQGIIMVYDVTRRDT--F--------------------TNLSDVWAKEI  112 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~--------------------~~~~~~~~~~~  112 (210)
                      ....++++.|......+...+.       -..|++|.|+|+.+-..  +                    ..+...+...+
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            4567889999766555444431       14589999999874311  0                    01112123333


Q ss_pred             hhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hC--CeEEEEccCCCCCHHHHHH
Q 028381          113 DLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-YG--CLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus       113 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~--~~~~~~Sa~~~~~i~~~~~  170 (210)
                      ..       .=+|+.||+|+.....+  +.++...+. ..  .++++++ ........+|+
T Consensus       173 ~~-------AD~IvlnK~Dl~~~~~l--~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~  223 (341)
T TIGR02475       173 AC-------ADLVILNKADLLDAAGL--ARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG  223 (341)
T ss_pred             Hh-------CCEEEEeccccCCHHHH--HHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence            32       23789999998755432  233444443 22  3455554 33345665554

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.42  E-value=0.00017  Score=42.00  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..+|.|+.|+|||||+..+..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988763

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.39  E-value=0.00065  Score=51.99  Aligned_cols=87  Identities=11%  Similarity=0.101  Sum_probs=48.7

Q ss_pred             EEEEEEEeCCCcccccc----chhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           61 KLKLAIWDTAGQERFRT----LTSSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      .+.+.++||+|......    .+..++  ...+-+++|+|++...  ..+.. +...+..    . .+-=+|.||.|...
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~-~~~~f~~----~-~~~~~I~TKlDet~  225 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIE-IITNFKD----I-HIDGIVFTKFDETA  225 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHH-HHHHhCC----C-CCCEEEEEeecCCC
Confidence            46789999999654322    122222  2456789999987432  12211 2121211    1 22358899999643


Q ss_pred             CceecHHHHHHHHHHhCCeEEEEcc
Q 028381          135 ERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      .    .-.+..+....+.|+..++.
T Consensus       226 ~----~G~~l~~~~~~~~Pi~~it~  246 (270)
T PRK06731        226 S----SGELLKIPAVSSAPIVLMTD  246 (270)
T ss_pred             C----ccHHHHHHHHHCcCEEEEeC
Confidence            2    22456667778888666653

>PRK04195 replication factor C large subunit; Provisional

Probab=97.37  E-value=0.0022  Score=53.46  Aligned_cols=24  Identities=42%  Similarity=0.616  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.++|.|++|+||||+++.+...
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999754

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.36  E-value=0.00083  Score=43.59  Aligned_cols=79  Identities=15%  Similarity=0.199  Sum_probs=47.3

Q ss_pred             EEEEc-CCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028381           17 LLMIG-DSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        17 i~i~G-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      |.|.| ..|+||||+...+...-.....+...       +..+.. +.+.++|+|+....  .....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~-------~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLL-------IDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEE-------EeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence            56677 56899999987765322111111111       111111 67899999986432  233667789999999987


Q ss_pred             CCcccHHHHHH
Q 028381           96 TRRDTFTNLSD  106 (210)
Q Consensus        96 ~~~~s~~~~~~  106 (210)
                      +. .++..+..
T Consensus        72 ~~-~s~~~~~~   81 (104)
T cd02042          72 SP-LDLDGLEK   81 (104)
T ss_pred             CH-HHHHHHHH
Confidence            54 44555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.35  E-value=0.00023  Score=51.97  Aligned_cols=26  Identities=35%  Similarity=0.424  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFE   40 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~   40 (210)
                      =.++|+||+|||||||++.+.+-+..
T Consensus        29 evv~iiGpSGSGKSTlLRclN~LE~~   54 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGLEEP   54 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCcCC
Confidence            35789999999999999999876543

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.35  E-value=0.0002  Score=42.93  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999998854

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.31  E-value=0.00022  Score=48.78  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++|+|++|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            58999999999999999998664

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.29  E-value=0.00021  Score=53.28  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      -|.++|++|||||||++-+.+-..
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            378999999999999999987643

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.29  E-value=0.00023  Score=48.13  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999855

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.26  E-value=0.00024  Score=53.21  Aligned_cols=26  Identities=35%  Similarity=0.600  Sum_probs=23.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ...+|++|+|++|||||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            46789999999999999999999854

This is thought to be an ATPase involved in viral DNA packaging [].

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.24  E-value=0.00026  Score=47.66  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998754

...

>PRK06217 hypothetical protein; Validated

Probab=97.24  E-value=0.00027  Score=51.02  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .+|+|+|.+|||||||.+.|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999743

>PRK14530 adenylate kinase; Provisional

Probab=97.22  E-value=0.00029  Score=52.26  Aligned_cols=20  Identities=25%  Similarity=0.632  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      +|+|+|+|||||||+.+.|.
T Consensus         5 ~I~i~G~pGsGKsT~~~~La   24 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLA   24 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999999886

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.22  E-value=0.00033  Score=47.49  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFE   40 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~   40 (210)
                      -.++++|++|+||||++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999999865443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK03839 putative kinase; Provisional

Probab=97.22  E-value=0.00029  Score=50.65  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      +|+++|+|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998643

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.22  E-value=0.0057  Score=45.33  Aligned_cols=62  Identities=26%  Similarity=0.319  Sum_probs=37.4

Q ss_pred             EEEEEeCC-CccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCC-CcEEEEEeCCCCC
Q 028381           63 KLAIWDTA-GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD-CIKLLVGNKVDKE  133 (210)
Q Consensus        63 ~~~l~D~~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~  133 (210)
                      .+.++||- |.+.   +-+...+++|.+|+|+|.+-. ++...+.     +.......+ .++.+|+||.|-.
T Consensus       135 e~VivDtEAGiEH---fgRg~~~~vD~vivVvDpS~~-sl~taer-----i~~L~~elg~k~i~~V~NKv~e~  198 (255)
T COG3640         135 EVVIVDTEAGIEH---FGRGTIEGVDLVIVVVDPSYK-SLRTAER-----IKELAEELGIKRIFVVLNKVDEE  198 (255)
T ss_pred             cEEEEecccchhh---hccccccCCCEEEEEeCCcHH-HHHHHHH-----HHHHHHHhCCceEEEEEeeccch
Confidence            44555552 3322   334567789999999998853 3333322     222223344 7899999999953

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.21  E-value=0.00035  Score=51.69  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      -++|+|++|||||||++-+.+-.-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            478999999999999999986654

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.19  E-value=0.00047  Score=49.50  Aligned_cols=22  Identities=36%  Similarity=0.655  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4789999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.19  E-value=0.00035  Score=48.14  Aligned_cols=22  Identities=18%  Similarity=0.472  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .|.|+|+.|||||||++.|.+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998744

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.18  E-value=0.00035  Score=50.55  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++|+|++|||||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999754

>PRK01889 GTPase RsgA; Reviewed

Probab=97.18  E-value=0.00047  Score=55.07  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      -+++|+|.+|+|||||++.+.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            4789999999999999999986543

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.15  E-value=0.00034  Score=50.21  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.13  E-value=0.00037  Score=50.30  Aligned_cols=20  Identities=20%  Similarity=0.466  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      .|+++|++||||||+++.+.
T Consensus         5 ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999997

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.13  E-value=0.00037  Score=52.62  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -++++||.|||||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            368899999999999999975

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.13  E-value=0.00041  Score=47.63  Aligned_cols=21  Identities=43%  Similarity=0.738  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |+|+|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999854

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.00069  Score=53.55  Aligned_cols=106  Identities=19%  Similarity=0.267  Sum_probs=58.2

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhc--------------CCCCCC--------CCCceeeeEEEEE----------
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTS--------------DNFEEL--------SPTIGVDFKVKYV----------   55 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~--------------~~~~~~--------~~~~~~~~~~~~~----------   55 (210)
                      +....++-=|.|+|..|+||||.+-.|..              ..|...        ..-.+..++....          
T Consensus        95 ~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~e  174 (483)
T KOG0780|consen   95 QPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASE  174 (483)
T ss_pred             ccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHH
Confidence            34445666789999999999998866531              111100        0000111111000          


Q ss_pred             ---EECCeEEEEEEEeCCCcccccc-c---hhh--cccCccEEEEEEECCCcccHHHHHHHHHHHHh
Q 028381           56 ---DVGGKKLKLAIWDTAGQERFRT-L---TSS--YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEID  113 (210)
Q Consensus        56 ---~~~~~~~~~~l~D~~g~~~~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  113 (210)
                         .+..+.+.+.|+||.|...... +   ...  -.-+.|-+|+|+|++-....+.-..-+...+.
T Consensus       175 gv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd  241 (483)
T KOG0780|consen  175 GVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD  241 (483)
T ss_pred             HHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence               0122457899999999543222 1   111  12357999999999987665544333555544

>PRK13949 shikimate kinase; Provisional

Probab=97.13  E-value=0.00044  Score=49.27  Aligned_cols=21  Identities=24%  Similarity=0.577  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      +|+++|++||||||+.+.|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998864

>PRK14532 adenylate kinase; Provisional

Probab=97.12  E-value=0.0004  Score=50.32  Aligned_cols=21  Identities=19%  Similarity=0.431  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      +|+++|+|||||||+..+|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999963

>TIGR00235 udk uridine kinase

Probab=97.10  E-value=0.00054  Score=50.47  Aligned_cols=26  Identities=19%  Similarity=0.183  Sum_probs=22.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ....-|+|.|++|||||||++.+.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            34467999999999999999999753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.10  E-value=0.00049  Score=47.20  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988743

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.08  E-value=0.00049  Score=44.84  Aligned_cols=21  Identities=43%  Similarity=0.790  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028381           15 FKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~   35 (210)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            457999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.08  E-value=0.00043  Score=50.57  Aligned_cols=21  Identities=24%  Similarity=0.428  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999754

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.07  E-value=0.0018  Score=45.26  Aligned_cols=21  Identities=33%  Similarity=0.713  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      ++|.|++|+|||+|+..+...
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~   22 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALN   22 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHH
Confidence            689999999999999988654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK14531 adenylate kinase; Provisional

Probab=97.06  E-value=0.00052  Score=49.56  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .+|+++|+|||||||+...|..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998863

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.06  E-value=0.0005  Score=51.39  Aligned_cols=23  Identities=26%  Similarity=0.573  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .++|+|+|+|||||||+...|..
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998853

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.06  E-value=0.058  Score=38.18  Aligned_cols=144  Identities=11%  Similarity=0.065  Sum_probs=96.5

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      +-.....|+++|..+.++..|...+...+-     +    + ...+....        -+|-..+.....    ...|.+
T Consensus        11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~-----~----~-~l~Vh~a~--------sLPLp~e~~~lR----prIDlI   68 (176)
T PF11111_consen   11 PELNTATILLVGTEEALLQQLAEAMLEEDK-----E----F-KLKVHLAK--------SLPLPSENNNLR----PRIDLI   68 (176)
T ss_pred             CCcceeEEEEecccHHHHHHHHHHHHhhcc-----c----e-eEEEEEec--------cCCCcccccCCC----ceeEEE
Confidence            334578999999999999999999985321     1    1 11111100        111111111111    248999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      +|++|.....++..++. =+..+...... + -+.++++-....+...+...++.+++..+.+|++.+.-.+..+...+-
T Consensus        69 VFvinl~sk~SL~~ve~-SL~~vd~~ffl-G-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA  145 (176)
T PF11111_consen   69 VFVINLHSKYSLQSVEA-SLSHVDPSFFL-G-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA  145 (176)
T ss_pred             EEEEecCCcccHHHHHH-HHhhCChhhhc-c-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence            99999999999998877 44444321111 2 245666666666667888999999999999999999998888888877


Q ss_pred             HHHHHHHHc
Q 028381          170 EELVLKILD  178 (210)
Q Consensus       170 ~~l~~~~~~  178 (210)
                      ..+++.+.-
T Consensus       146 qRLL~~lqi  154 (176)
T PF11111_consen  146 QRLLRMLQI  154 (176)
T ss_pred             HHHHHHHHH
Confidence            777776643

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.05  E-value=0.00046  Score=50.10  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      +|+|+|+|||||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998743

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK00625 shikimate kinase; Provisional

Probab=97.03  E-value=0.00058  Score=48.79  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      +|+++|.+||||||+.+.|..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998853

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.03  E-value=0.00059  Score=49.41  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .-.++|+|++|||||||++.+++.-
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4578999999999999999998643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.03  E-value=0.00051  Score=53.97  Aligned_cols=22  Identities=36%  Similarity=0.617  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~   38 (210)
                      ++++||+|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7889999999999999997653

>PRK08233 hypothetical protein; Provisional

Probab=97.03  E-value=0.00054  Score=49.18  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      +-|+|.|.+|||||||.+.|...
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            56888999999999999999743

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.03  E-value=0.0006  Score=50.27  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ....|+|.|++|||||||++.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999998753

>PRK02496 adk adenylate kinase; Provisional

Probab=97.03  E-value=0.00062  Score=49.14  Aligned_cols=22  Identities=23%  Similarity=0.564  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .+|+|+|+|||||||+.+.|..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998863

>TIGR01351 adk adenylate kinases

Probab=97.03  E-value=0.00047  Score=50.90  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      ||+|+|+|||||||+...|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999863

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.03  E-value=0.00055  Score=49.29  Aligned_cols=20  Identities=20%  Similarity=0.494  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028381           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~   36 (210)
                      |+++|+|||||||+...|..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.02  E-value=0.00056  Score=51.49  Aligned_cols=21  Identities=38%  Similarity=0.577  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -+.++||.|+|||||++.+++
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999997

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.01  E-value=0.00065  Score=48.69  Aligned_cols=23  Identities=30%  Similarity=0.307  Sum_probs=20.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ..-.++++|++|+|||||++.+.
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            34578999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.01  E-value=0.00087  Score=48.10  Aligned_cols=26  Identities=15%  Similarity=0.243  Sum_probs=22.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      -=.++++|+.|+|||||++.+.+...
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCC
Confidence            34688999999999999999987643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.00  E-value=0.0024  Score=41.70  Aligned_cols=99  Identities=14%  Similarity=0.108  Sum_probs=53.2

Q ss_pred             cCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc
Q 028381           21 GDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD   99 (210)
Q Consensus        21 G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   99 (210)
                      +..|+||||+...|...-... ...+...+..     ..... .+.++|+|+....  .....+..+|.++++.+.+. .
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~~~-D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQFGD-DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-P   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCCCC-CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-H
Confidence            456799999887765322111 1111111111     11111 6788999985432  33456788999999998664 3


Q ss_pred             cHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028381          100 TFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus       100 s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (210)
                      +...... +...+..........+.+|+|+
T Consensus        78 s~~~~~~-~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKR-LLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHH-HHHHHHHcCCCCcCceEEEecC
Confidence            4444444 4444444221113355666664

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.99  E-value=0.00054  Score=50.99  Aligned_cols=21  Identities=24%  Similarity=0.271  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            689999999999999998753

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.99  E-value=0.002  Score=47.14  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~   38 (210)
                      |+|.|++||||||+++.+...-
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.99  E-value=0.0093  Score=42.72  Aligned_cols=86  Identities=19%  Similarity=0.132  Sum_probs=58.3

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec
Q 028381           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT  139 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  139 (210)
                      ..+.+.++|+|+...  ......+..+|.+++++..+. .+...+.. +...+..    .+.|+.+|+|+.|....   .
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~-~~~~l~~----~~~~~~vV~N~~~~~~~---~  159 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLER-AVELVRH----FGIPVGVVINKYDLNDE---I  159 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHH-HHHHHHH----cCCCEEEEEeCCCCCcc---h
Confidence            457889999997543  233455688999999999884 35555555 4444443    34678899999996422   3


Q ss_pred             HHHHHHHHHHhCCeEEE
Q 028381          140 KKEGINFAREYGCLFIE  156 (210)
Q Consensus       140 ~~~~~~~~~~~~~~~~~  156 (210)
                      .++++++....+++++-
T Consensus       160 ~~~~~~~~~~~~~~vl~  176 (179)
T cd03110         160 AEEIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHHHcCCCeEE
Confidence            45667778888887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.99  E-value=0.0026  Score=43.30  Aligned_cols=22  Identities=32%  Similarity=0.593  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -|++.|+.|+|||||++.+...
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999999865

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PHA00729 NTP-binding motif containing protein

Probab=96.98  E-value=0.00077  Score=49.96  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ...+|+|.|+||+|||+|+.++...
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998643

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.98  E-value=0.0007  Score=50.21  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            67899999999999999999764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.98  E-value=0.00084  Score=47.82  Aligned_cols=24  Identities=29%  Similarity=0.360  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..-+.|+|++|||||||++++...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            346899999999999999999854

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.96  E-value=0.00053  Score=47.05  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=22.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ....||+|.|-||+|||||..++.
T Consensus         5 r~~PNILvtGTPG~GKstl~~~la   28 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLA   28 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHH
Confidence            667899999999999999999986

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.94  E-value=0.00079  Score=49.48  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      =.++++|++|+|||||++.+.+..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.94  E-value=0.0008  Score=49.65  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.94  E-value=0.00079  Score=49.86  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999754

>PLN02200 adenylate kinase family protein

Probab=96.93  E-value=0.0011  Score=49.85  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=21.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ...+.|+|+|+|||||||+..+|..
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998863

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.92  E-value=0.00086  Score=48.65  Aligned_cols=23  Identities=39%  Similarity=0.606  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.92  E-value=0.00086  Score=49.26  Aligned_cols=23  Identities=39%  Similarity=0.470  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999999764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		7e-55
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-47
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-46
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-45
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-45
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-45
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		4e-45
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		5e-45
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-45
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-44
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		5e-44
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-43
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-43
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		3e-42
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-42
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		4e-42
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		5e-42
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		8e-42
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-41
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-41
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		1e-41
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-41
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-41
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-41
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-41
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-41
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		5e-41
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-41
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		8e-41
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-40
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-39
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-39
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-37
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		8e-37
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-36
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		4e-36
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		5e-36
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		9e-36
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-35
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-35
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-35
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-35
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-35
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-35
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-35
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-35
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		4e-35
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		3e-34
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		9e-34
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-33
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-31
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		3e-31
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-30
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-30
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		7e-30
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-29
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-29
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-29
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		4e-29
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		6e-29
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		6e-29
2efc_B	181	Ara7-GdpATVPS9A Length = 181		7e-29
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		8e-29
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		8e-29
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		9e-29
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		9e-29
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-28
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-28
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-28
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-28
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-28
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-28
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-28
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-28
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-28
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-28
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		7e-28
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		7e-28
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		8e-28
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		8e-28
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		4e-27
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-27
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		7e-27
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		8e-27
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		9e-27
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		9e-27
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-26
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-26
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-26
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-26
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-26
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-26
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-26
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		6e-26
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		6e-26
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-25
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-25
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-25
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-25
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-25
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-25
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		7e-25
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-24
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-23
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-23
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-23
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-23
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-23
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		6e-23
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-22
1byu_A	216	Canine Gdp-Ran Length = 216		8e-22
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-21
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-21
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		7e-21
1s1c_A	183	Crystal Structure Of The Complex Between The Human		9e-21
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		9e-21
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-20
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-20
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-20
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-20
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-20
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		1e-20
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-20
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-20
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-20
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-20
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-20
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-20
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-20
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		3e-20
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		4e-20
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		4e-20
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		5e-20
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		7e-20
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		7e-20
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		9e-20
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-19
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-19
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-19
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-19
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-19
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-19
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-19
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-19
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-19
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-19
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-19
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		3e-19
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		3e-19
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-19
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		5e-19
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		8e-19
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		9e-19
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		1e-18
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-18
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-18
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-18
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		2e-18
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-18
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		4e-18
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-17
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-17
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-17
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-17
1mh1_A	186	Small G-Protein Length = 186		3e-17
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-17
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-17
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		3e-17
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		4e-17
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		4e-17
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		4e-17
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		4e-17
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		4e-17
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		4e-17
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		4e-17
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		4e-17
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		4e-17
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		4e-17
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		4e-17
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		5e-17
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		5e-17
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		6e-17
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		6e-17
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		6e-17
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		6e-17
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		7e-17
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		9e-17
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		9e-17
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-16
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-16
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-16
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		1e-16
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-16
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-16
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-16
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-16
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		1e-16
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-16
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-16
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-16
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-16
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-16
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		3e-16
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-16
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		3e-16
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-16
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		3e-16
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-16
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		4e-16
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		4e-16
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		4e-16
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		5e-16
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-16
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-16
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		6e-16
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-16
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		6e-16
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		7e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		7e-16
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		8e-16
4q21_A	189	Molecular Switch For Signal Transduction: Structura		8e-16
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		9e-16
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-15
2kb0_A	178	Cdc42(T35a) Length = 178		1e-15
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		1e-15
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-15
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-15
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-15
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-15
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-15
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-15
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-15
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-15
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-15
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-15
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-15
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-15
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-15
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		3e-15
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		3e-15
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-15
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-15
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-15
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		4e-15
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		4e-15
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		5e-15
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		5e-15
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-15
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		6e-15
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		6e-15
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		6e-15
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-15
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		7e-15
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		7e-15
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		7e-15
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		8e-15
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-14
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-14
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-14
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-14
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-14
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-14
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		2e-14
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		3e-14
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		3e-14
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		4e-14
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		6e-14
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		7e-14
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		8e-14
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		1e-13
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-13
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		4e-13
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		5e-13
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		5e-13
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-12
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		8e-11
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		8e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		9e-11
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		9e-11
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		1e-10
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-10
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		5e-10
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		6e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		6e-10
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		1e-09
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		1e-09
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-09
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-09
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		3e-09
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-09
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		4e-09
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		5e-09
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		5e-09
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		5e-09
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		5e-09
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		6e-09
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		7e-09
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		1e-08
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-08
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-08
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-08
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-08
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-08
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		2e-08
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		3e-08
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		1e-07
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		1e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-07
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		1e-07
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		1e-07
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-07
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		1e-07
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		2e-07
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		2e-07
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		2e-07
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		2e-07
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		2e-07
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		2e-07
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		4e-07
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-07
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		4e-07
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		5e-07
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		6e-07
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-07
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		8e-07
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-06
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		1e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-06
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		2e-06
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		3e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		4e-06
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		5e-06
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-05
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-05
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		2e-04
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		2e-04
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		3e-04

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  209 bits (533), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 128/169 (75%), Gaps = 3/169 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +  LVGNK+DKE
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKIDKE 134
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           + R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L
Sbjct: 135 N-REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  184 bits (467), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IGDSGVGKS LLL F  D + +    TIGVDFK++ + +  K +KL IWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT RD+F N+   W +EID Y+  ++  KLLVGN
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ-WIQEIDRYAM-ENVNKLLVGN 122
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  S+RVVT  EG   A  +G  FIE SAK   NV+Q F  +  +I
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  180 bits (456), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 123/177 (69%), Gaps = 3/177 (1%)
Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           + S S+   E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ G
Sbjct: 3   LGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62
Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           K +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ +
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-E 120
Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 123/177 (69%), Gaps = 3/177 (1%)
Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           + S S+   E+DYLFKLL+IGDSGVGK+ LLL F  D + E    TIGVDFK++ +++ G
Sbjct: 3   LGSMSSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62
Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           K +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ +
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-E 120
Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y++ ++  KLLVGN
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 122
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y++ ++  KLLVGN
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 122
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  177 bits (448), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/173 (53%), Positives = 120/173 (69%), Gaps = 3/173 (1%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLK 63
           S+   E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +K
Sbjct: 24  SSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 83
Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  K
Sbjct: 84  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 141
Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           LLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F     +I
Sbjct: 142 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  177 bits (448), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWD
Sbjct: 21  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGN
Sbjct: 81  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 138
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 139 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  177 bits (448), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWD
Sbjct: 2   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGN
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 119
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 118/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+D LFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWD
Sbjct: 2   EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGN
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 119
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 118/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWD
Sbjct: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVG 
Sbjct: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGI 121
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 116/160 (72%), Gaps = 3/160 (1%)
Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDT 69
           + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + + GK++KL IWDT
Sbjct: 7   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQE FR++T SYYRGA G ++VYD+TRRDTF +L+  W ++   +S N + + +L+GNK
Sbjct: 67  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNK 124
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
            D ES R V K+EG  FARE+G +F+E SAKT  NV++ F
Sbjct: 125 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/191 (49%), Positives = 129/191 (67%), Gaps = 7/191 (3%)
Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGG 59
           + +SS + + +D + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ G
Sbjct: 7   VSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 66
Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           KK+KL +WDTAGQERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N 
Sbjct: 67  KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-ND 124
Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF---EELVLKI 176
           +   LLVGNK D E+ RVVT  +G   A+E G  FIE SAK   NV + F    +L+ + 
Sbjct: 125 EAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183
Query: 177 LDTPSLLAEGS 187
           +D+  L+  G+
Sbjct: 184 IDSNKLVGVGN 194

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  168 bits (425), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 116/158 (73%), Gaps = 3/158 (1%)
Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + V++ GK++KL IWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   +S++   I +L+GNK D
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSSNMVI-MLIGNKSD 137
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
            ES R V ++EG  FARE+G +F+E SAKT  NV++ F
Sbjct: 138 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/205 (47%), Positives = 127/205 (61%), Gaps = 6/205 (2%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IG+SGVGKS LLL F+ D +  +   TIGVDFK+K V++ GK +KL IWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +  +W +EID Y+T+   +KLLVGN
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATST-VLKLLVGN 121
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS---LLAE 185
           K D + +RVV       FA      F+E SA    NV+  F  +  +I ++ S   L   
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 186 GSKGLKKNIFKQKPPEADAAASGCC 210
             K   K     K         GCC
Sbjct: 182 TQKKEDKGNVNLKGQSLTNTGGGCC 206

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 114/174 (65%), Gaps = 3/174 (1%)
Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKL 62
           S+ +   + Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + ++V G+K+
Sbjct: 5   SATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 64
Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           KL IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +LS       +L  TN + +
Sbjct: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTV 122
Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            +L+GNK D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI
Sbjct: 123 IILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 13/174 (7%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIW 67
           +++D+LFKLL+IGDSGVGKSSLLL F  + F      TIGVDFK++ V++ G+K+KL IW
Sbjct: 4   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC---IKL 124
           DTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W  EI     NQ+C    ++
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEI-----NQNCDDVCRI 117
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ---CFEELVLK 175
           LVGNK D    +VV  ++   FA + G    E SAK  VNV++   C  ELVL+
Sbjct: 118 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  166 bits (420), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 120/173 (69%), Gaps = 3/173 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IG+SGVGKS LLL F+ D +  +   TIGVDFK+K V++ GK +KL IWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +  +W +EID Y+T+   +KLLVGN
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATST-VLKLLVGN 121
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           K D + +RVV       FA      F+E SA    NV+  F  +  +I ++ S
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 118/169 (69%), Gaps = 3/169 (1%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIW 67
           + +DYLFKLL+IGDSGVGK+ +L  F+ D F      TIG+DFK++ +++ GK++KL IW
Sbjct: 3   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ +++  D  K+++G
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILG 120
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 111/159 (69%), Gaps = 4/159 (2%)
Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ GKK+KL IWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRT+T++YYRGA GII+VYD+T   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           D E+ RVVT  +G   A+E G  FIE SAK   NV + F
Sbjct: 119 DMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/168 (52%), Positives = 117/168 (69%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IG+SGVGKS LLL F+ D +  +   TIGVDFK+K V++ GK +KL IWD
Sbjct: 17  EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +  +W +EID Y+T+   +KLLVGN
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATST-VLKLLVGN 134
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D + +RVV       FA      F+E SA    NV+  F  +  +I
Sbjct: 135 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/162 (53%), Positives = 113/162 (69%), Gaps = 3/162 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           FRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGNK D  +
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCDLTT 118
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 119 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 111/159 (69%), Gaps = 4/159 (2%)
Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ GKK+KL IWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRT+T++YYRGA GII+VYD+T   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           D E+ RVVT  +G   A+E G  FIE SAK   NV + F
Sbjct: 119 DXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 121/203 (59%), Gaps = 10/203 (4%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
             FDY FK+L+IG+S VGK+S L  +  D+F      T+G+DFKVK +    K++KL IW
Sbjct: 3   HXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIW 62
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAG ER+RT+T++YYRGA G I+ YD+T  ++F  + D W+ +I  YS +   + LLVG
Sbjct: 63  DTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVG 120
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI-------LDTP 180
           NK D E ERVV+ + G   A   G  F E SAK  +NV+Q FE LV  I       LDT 
Sbjct: 121 NKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTA 180
Query: 181 SLLAEGSKGLKKNIFKQKPPEAD 203
                G+K   +   +Q PP  D
Sbjct: 181 DPAVTGAKQGPQLTDQQAPPHQD 203

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWD 68
             DYLFKLL+IGDSGVGK+ +L  F+ D F      TIG+DFK++ +++ GK++KL IWD
Sbjct: 2   HMDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ +++  D  K+++GN
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGN 119
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 111/159 (69%), Gaps = 4/159 (2%)
Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ GKK+KL +WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           D E+ RVVT  +G   A+E G  FIE SAK   NV + F
Sbjct: 119 DXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 113/175 (64%), Gaps = 3/175 (1%)
Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKK 61
           S + +   + Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + ++V G+K
Sbjct: 19  SMATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 78
Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQ RFR +T SYYRGA G +MVYD+TRR T+ +LS       +L  TN + 
Sbjct: 79  IKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNT 136
Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + +L+GNK D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI
Sbjct: 137 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/157 (55%), Positives = 110/157 (70%), Gaps = 4/157 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ GKK+KL +WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           ERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N +   LLVGNK D 
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM 124
Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           E+ RVVT  +G   A+E G  FIE SAK   NV + F
Sbjct: 125 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 160

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  163 bits (412), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 115/175 (65%), Gaps = 3/175 (1%)
Query: 8   QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAI 66
           Q  FDY+FKLL+IG+S VGK+S L  +  D F      T+G+DFKVK V    K++KL I
Sbjct: 17  QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 76
Query: 67  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
           WDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS +   + +LV
Sbjct: 77  WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILV 134
Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           GNK D E ERVV  ++G   A + G  F E SAK  ++V+Q FE LV  I D  S
Sbjct: 135 GNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 111/164 (67%), Gaps = 3/164 (1%)
Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           FDY+FK+L+IG+S VGK+S L  +  D+F      T+G+DFKVK +    K++KL IWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + LLVGNK
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNK 119
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
            D E ERVV+ + G   A   G  F E SAK  +NV+Q FE LV
Sbjct: 120 CDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 123/174 (70%), Gaps = 4/174 (2%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKL 64
            S +  D+  ++++IG  GVGK+SL+  FT D F E    T+GVDFK+K V++ GKK++L
Sbjct: 18  GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRL 77
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y++ +D   L
Sbjct: 78  QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELL 135
Query: 125 LVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKIL 177
           LVGNK+D E++R +T+++G  FA++  G  F E SAK   NV + F +LV  IL
Sbjct: 136 LVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 111/163 (68%), Gaps = 3/163 (1%)
Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           DY+FKLL+IG+S VGK+S L  +  D+F      T+G+DFKVK V    K++KL IWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQER+RT+T++YYRGA G +++YD+  +++F  + D WA +I  YS +   + +LVGNK 
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQV-ILVGNKC 137
Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           D E ERVV  ++G   A + G  F E SAK  +NV+Q FE LV
Sbjct: 138 DLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 107/161 (66%), Gaps = 4/161 (2%)
Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           +D  FK++++GDSGVGK+ LL+ F    F       T+G+DF+ K +DV G K+KL +WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFR++T +YYR A  ++++YDVT + +F N+   W  EI  Y+   D   +L+GN
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ-AWLTEIHEYA-QHDVALMLLGN 124
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           KVD   ERVV +++G   A+EYG  F+E SAKT +NV   F
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  149 bits (377), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 117/171 (68%), Gaps = 3/171 (1%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIW 67
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K ++VGGK +KL IW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFR++T SYYRGA G ++VYD+T R+T+  L++ W  +  + ++ Q+ + +L G
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 122
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           NK D +++R VT  E   FA+E   +F+E SA T  NV++ F +   KIL+
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 110/168 (65%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWD
Sbjct: 25  EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGN
Sbjct: 85  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGN 142
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  147 bits (371), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 117/171 (68%), Gaps = 3/171 (1%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIW 67
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K ++VGGK +KL IW
Sbjct: 6   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFR++T SYYRGA G ++VYD+T R+T+  L++ W  +  + ++ Q+ + +L G
Sbjct: 66  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 123
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           NK D +++R VT  E   FA+E   +F+E SA T  +V++ F +   KIL+
Sbjct: 124 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 174

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/167 (45%), Positives = 109/167 (65%), Gaps = 3/167 (1%)
Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           +DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWDT
Sbjct: 17  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGNK
Sbjct: 77  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 134
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 135 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  146 bits (368), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 113/170 (66%), Gaps = 4/170 (2%)
Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKL-KLAIWD 68
           +DYLFK+++IGDSGVGKS+LL  FT D F  E   TIGV+F  K + +   K+ K  IWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQER+R +TS+YYRGA G ++VYD+T++++F N+ + W KE+   + + + + LLVGN
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELR-DNADSNIVILLVGN 121
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           K D +  RV+   +   +A++    FIE SA    NV+  F +L+ +I +
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYN 171

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 109/167 (65%), Gaps = 3/167 (1%)
Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           +DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGNK
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 119
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            D    R V   E   FA +    FIE SA    NV++ F+ ++ +I
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 109/168 (64%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWD
Sbjct: 25  EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGN
Sbjct: 85  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGN 142
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 116/173 (67%), Gaps = 3/173 (1%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
            S +++D+LFK+++IG++GVGK+ L+  FT   F      TIGVDF +K V++ G+K+KL
Sbjct: 18  GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKL 77
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            IWDTAGQERFR++T SYYR A  +I+ YD+T  ++F  L + W +EI+ Y++N+  I +
Sbjct: 78  QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNK-VITV 135
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           LVGNK+D    R V+++    F+      ++E SAK   NV++ F +L  +++
Sbjct: 136 LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 109/168 (64%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWD
Sbjct: 4   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 63
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGN
Sbjct: 64  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGN 121
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 122 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 108/174 (62%), Gaps = 5/174 (2%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           ++DYLFK+++IGDSGVGKS+LL  FT+D F  E   TIGV+F  + ++V  KK+K  IWD
Sbjct: 6   DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVG 127
           TAG ER+R +TS+YYRGA G ++VYD+++  ++ N +  W  E  L     D + + L+G
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLTE--LRENADDNVAVGLIG 122
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           NK D    R V   E  NFA E   LF E SA    NV + F EL++ I    S
Sbjct: 123 NKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVS 176

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWD
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + +  LVGN
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIXLVGN 118
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 116/171 (67%), Gaps = 3/171 (1%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIW 67
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K ++VGGK +KL IW
Sbjct: 3   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAG ERFR++T SYYRGA G ++VYD+T R+T+  L++ W  +  + ++ Q+ + +L G
Sbjct: 63  DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 120
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           NK D +++R VT  E   FA+E   +F+E SA T  +V++ F +   KIL+
Sbjct: 121 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 171

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWD
Sbjct: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 66
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + +  LVGN
Sbjct: 67  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIXLVGN 124
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 109/168 (64%), Gaps = 3/168 (1%)
Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D+LFK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V+VGGK +KL IWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFR++T SYYRGA G ++VYD+T R+T+ +L+        L S N   + +L GNK 
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKK 140
Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           D + ER VT  E   FA+E   +F+E SA T  NV++ F +    IL+
Sbjct: 141 DLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 5/169 (2%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           ++D LFK+++IGDSGVGKS+LL  FT + F  +   TIGV+F  + +++ GK++K  IWD
Sbjct: 9   DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVG 127
           TAGQER+R +TS+YYRGA G ++VYD+++  ++ N +  W  E  L     D + + L+G
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLSE--LRENADDNVAVGLIG 125
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D    R V  +E   FA+E   LF E SA    NV + FEEL+  I
Sbjct: 126 NKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  139 bits (351), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 113/173 (65%), Gaps = 8/173 (4%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
           +++D+LFKL+++GD+ VGK+ ++  F +  F E    TIGVDF +K +++ GK++KL IW
Sbjct: 24  EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFRT+T SYYR A G I+ YD+T+R +F ++   W +++  Y+   + ++LL+G
Sbjct: 84  DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNIVQLLIG 141
Query: 128 NKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCF----EELVLK 175
           NK D    R V+  E  + A  Y  L  IE SAK   NV++ F     EL+++
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 90/116 (77%), Gaps = 3/116 (2%)
Query: 17  LLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           LL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           RT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGNK D
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCD 114

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 109/174 (62%), Gaps = 5/174 (2%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKL 64
           +  ++++++FK+++IG+SGVGK++LL  FT + F   S  TIGV+F  + V +G   +K 
Sbjct: 2   SHMEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-K 123
            IWDTAG ER+R +TS+YYRGA G ++V+D+T+  T+  + + W KE  LY   +  I  
Sbjct: 62  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVV 118
Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +LVGNK D    R V  +E   FA   G LF+E SA    NV+  FE ++ +I 
Sbjct: 119 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 108/171 (63%), Gaps = 5/171 (2%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIW 67
           ++++++FK+++IG+SGVGK++LL  FT + F   S  TIGV+F  + V +G   +K  IW
Sbjct: 20  EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLV 126
           DTAG ER+R +TS+YYRGA G ++V+D+T+  T+  + + W KE  LY   +  I  +LV
Sbjct: 80  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVVMLV 136
Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           GNK D    R V  +E   FA   G LF+E SA    NV+  FE ++ +I 
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 95/158 (60%), Gaps = 6/158 (3%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++G++ VGKSS++L F S++F E   PTIG  F  + V +    +K  IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           F +L   YYR AQ  ++VYDVT+  +F      W KE+     ++D I  LVGNK+D   
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARH-WVKELH-EQASKDIIIALVGNKIDXLQ 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           +  ER V ++EG   A E G LF E SAKT  NV   F
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 98/163 (60%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+ ++GD+GVGKSS++  F  D+F+  +SPTIG  F  K V  G +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RF +L   YYRG+   ++VYD+T++D+F  L   W KE+  +   ++ +  + GNK D  
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHGP-ENIVMAIAGNKCDLS 141
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             R V  K+   +A   G + +E SAK  +N+++ F+ +  +I
Sbjct: 142 DIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  126 bits (317), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  DTF    + W KE+   ++    I  L GNK D  
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQASPNIVIA-LAGNKADLA 121
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S+R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 122 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 104/168 (61%), Gaps = 3/168 (1%)
Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           Y FK++++G+  VGK+SL+L +  + F +    T+G  F  K +++GGK++ LAIWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
            E ER V+ +E  ++A   G      SAK    +++ F +L  ++++T
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 110/184 (59%), Gaps = 12/184 (6%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYV-------- 55
           S S  ++DYL K L +GDSGVGK+S+L  +T   F  +   T+G+DF+ K V        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61
Query: 56  -DVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEID 113
             VG G+++ L +WDTAG ERFR+LT++++R A G ++++D+T   +F N+ + W  ++ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQ 120
Query: 114 LYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           +++ +++   +L GNK D E +R V ++E    A +YG  + E SA    N+    E L+
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180
Query: 174 LKIL 177
             I+
Sbjct: 181 DLIM 184

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+ ++GD+GVGKSS++  F  D+F+  ++PTIG  F  K V    +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR L   YYRG+   I+VYD+T+ +TF+ L + W +E+  +      +  + GNK D  
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCDLT 123
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
             R V +++  ++A     +F+E SAK  +N+ + F E+  +I  T
Sbjct: 124 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 169

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T ++TF   +  W KE+   ++    I  L GNK D  
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIA-LAGNKADLA 126
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R+V  +E   +A +   LF+E SAKT +NV   F  +  K+
Sbjct: 127 NKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TI   F  + V +    +K  IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  DTF    + W KE+   ++    I  L GNK D  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQASPNIVIA-LAGNKADLA 123
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S+R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  DTF    + W KE+   ++    I  L GNK D  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQASPNIVIA-LAGNKADLA 123
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S+R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD G GKSSL+L F  D F E    TIG  F  + + V    +K  IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           + +L   YYRGA   I+V+DVT + +F   +  W +E+     N + +  L GNK D   
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQG-NPNMVMALAGNKSDLLD 131
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            R VT ++   +A+E G  F+E SAKT  NV++ F E+  ++
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 125
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 109/181 (60%), Gaps = 16/181 (8%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGK-------- 60
           ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V    +        
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 61  --KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI--DLYS 116
             K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ + W  ++  + Y 
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYC 139
Query: 117 TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            N D +  L+GNK D   +R V +++    A +YG  + E SA T  NV++  E L+  I
Sbjct: 140 ENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197
Query: 177 L 177
           +
Sbjct: 198 M 198

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           Y FK++++G+  VGK+SL+L +  + F +    T+   F  K +++GGK++ LAIWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 136
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
            E ER V+ +E  ++A   G      SAK    +++ F +L  ++++T
Sbjct: 137 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 184

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           Y FK++++G+  VGK+SL+L +  + F +    T+   F  K +++GGK++ LAIWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
            E ER V+ +E  ++A   G      SAK    +++ F +L  ++++T
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 97/166 (58%), Gaps = 3/166 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+ ++GD+GVGKSS++  F  D+F+  ++PTIG  F  K V    +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR L   YYRG+   I+VYD+T+ +TF+ L + W +E+  +      +  + GNK D  
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCDLT 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
             R V +++  ++A     +F+E SAK  +N+ + F E+  +I  T
Sbjct: 125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 170

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 125
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF E SAKT  NV + F  +  K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 111/186 (59%), Gaps = 16/186 (8%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYV--DVGGK- 60
           S +  ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V  D  G  
Sbjct: 2   SMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 61  -------KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI- 112
                  K+ L +WDTAG ERFR+LT++++R A G ++++D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQ 120
Query: 113 -DLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171
            + Y  N D +  L+GNK D   +R V +++    A +YG  + E SA T  NV++  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 172 LVLKIL 177
           L+  I+
Sbjct: 179 LLDLIM 184

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 111/186 (59%), Gaps = 16/186 (8%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYV--DVGGK- 60
           S +  ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V  D  G  
Sbjct: 2   SMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 61  -------KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI- 112
                  K+ L +WDTAG ERFR+LT++++R A G ++++D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQ 120
Query: 113 -DLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171
            + Y  N D +  L+GNK D   +R V +++    A +YG  + E SA T  NV++  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 172 LVLKIL 177
           L+  I+
Sbjct: 179 LLDLIM 184

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 108/182 (59%), Gaps = 16/182 (8%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYV--DVGGK- 60
           S +  ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V  D  G  
Sbjct: 2   SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 61  -------KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI- 112
                  K+ L +WDTAG ERFR+LT++++R A G ++ +D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 113 -DLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171
            + Y  N D +  L+GNK D   +R V +++    A +YG  + E SA T  NV++  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 172 LV 173
           L+
Sbjct: 179 LL 180

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 123
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 124 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   S    K ID   T +  D I +LVGNK D
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTS----KWIDDVRTERGSDVIIMLVGNKTD 118
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
              +R +T +EG   A+E   +FIE SAKT  NV+Q F  +   +L+
Sbjct: 119 LADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 108/182 (59%), Gaps = 16/182 (8%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYV--DVGGK- 60
           S +  ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V  D  G  
Sbjct: 2   SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 61  -------KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI- 112
                  K+ L +WDTAG ERFR+LT++++R A G ++ +D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 113 -DLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171
            + Y  N D +  L+GNK D   +R V +++    A +YG  + E SA T  NV++  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 172 LV 173
           L+
Sbjct: 179 LL 180

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 98/165 (59%), Gaps = 7/165 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDF--KVKYVDVGGKKLKLAIWDTAG 71
           +KL+ +G+  VGK+S++  F  D F+     TIG+DF  K  Y+D G  +L+L  WDTAG
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQL--WDTAG 59
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERFR+L  SY R +   I+VYD+T R +F N +  W ++I L    +D I  LVGNK D
Sbjct: 60  QERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDI-LNERGKDVIIALVGNKTD 117
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               R VT +EG   A+EY   F E SAK   N++  F++   K+
Sbjct: 118 LGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 7/161 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   S    K ID   T +  D I +LVGNK D
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS----KWIDDVRTERGSDVIIMLVGNKTD 130
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
              +R V+ +EG   A+E   +FIE SAK   NV+Q F  +
Sbjct: 131 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 97/161 (60%), Gaps = 7/161 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   +    K ID   T +  D I +LVGNK D
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT----KWIDDVRTERGSDVIIMLVGNKTD 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
              +R V+ +EG   A+E   +FIE SAK   NV+Q F  +
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 110/199 (55%), Gaps = 8/199 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   +    K ID   T +  D I +LVGNK D
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT----KWIDDVRTERGSDVIIMLVGNKTD 129
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLK 191
              +R V+ +EG   A+E   +FIE SAK   NV+Q F  +   +    S   + S+   
Sbjct: 130 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES-TQDRSREDM 188
Query: 192 KNIFKQKPPEADAAASGCC 210
            +I  +KP E   +  GC 
Sbjct: 189 IDIKLEKPQEQPVSEGGCS 207

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 107/171 (62%), Gaps = 7/171 (4%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           LFK++++GD GVGKSSL+  + ++ F+ +L  TIGV+F  K ++V G  + + IWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERFR+L + +YRG+   ++ + V    +F NLS+ W KE   Y+  ++      +++GNK
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 127
Query: 130 VDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKILDT 179
           +D  SER V+ +E   + R+ G   + E SAK   NV   FEE V ++L T
Sbjct: 128 IDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 177

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 107/171 (62%), Gaps = 7/171 (4%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           LFK++++GD GVGKSSL+  + ++ F+ +L  TIGV+F  K ++V G  + + IWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERFR+L + +YRG+   ++ + V    +F NLS+ W KE   Y+  ++      +++GNK
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 125
Query: 130 VDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKILDT 179
           +D  SER V+ +E   + R+ G   + E SAK   NV   FEE V ++L T
Sbjct: 126 IDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 7/169 (4%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GD GVGKSSL+  + ++ F+  +  TIGV+F  + ++V G+ + L IWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERF++L + +YRGA   ++ + V  R +F NL + W KE   Y+  +D      +++GNK
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGN-WQKEFIYYADVKDPEHFPFVVLGNK 125
Query: 130 VDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           VDKE +R VT +E   +  E G   ++E SAK   NV   FEE V ++L
Sbjct: 126 VDKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +K+++ GD+ VGKSS L+    + F E +S T+GVDF++K + V G++  L +WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
           RFR++  SY+R A G++++YDVT   +F N+ + W   I+  + ++    +LVGNK D  
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIE-DAAHETVPIMLVGNKADIR 146
Query: 132 ----KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                E ++ V    G   A  YG LF E SAK   N+ +    L  ++
Sbjct: 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F E+  PTI   ++ K V+V  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T+ D   +LVGNK D E
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 121
Query: 134 SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV K++G N AR++  C F+E SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F E+  PTI   ++ K V+V  ++  L I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T+ D   +LVGNK D E
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 123
Query: 134 SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV K++G N AR++  C F+E SAK+++NV + F +LV +I
Sbjct: 124 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 97/161 (60%), Gaps = 7/161 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   +    K ID   T +  D I +LVGNK D
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT----KWIDDVRTERGSDVIIMLVGNKTD 117
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
              +R V+ +EG   A+E   +FIE SAK   NV+Q F  +
Sbjct: 118 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 110/199 (55%), Gaps = 8/199 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   +    K ID   T +  D I +LVGNK D
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT----KWIDDVRTERGSDVIIMLVGNKTD 132
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLK 191
              +R V+ +EG   A+E   +FIE SAK   NV+Q F  +   +    S   + S+   
Sbjct: 133 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES-TQDRSREDM 191
Query: 192 KNIFKQKPPEADAAASGCC 210
            +I  +KP E   +  GC 
Sbjct: 192 IDIKLEKPQEQPVSEGGCL 210

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F +E  PTI   ++ K V+V  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T +D   +LVGNK D E
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 134 SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV K++G N AR++  C F+E SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score =  114 bits (284), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F E+  PTI   ++ K V+V  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T +D   +LVGNK D E
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 134 SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV K++G N AR++  C F+E SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 7/171 (4%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           LFK++++GD GVGKSSL+  + ++ F+ +L  TIGV+F  K ++V G  + + IWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERFR+L + +YRG+   ++ + V    +F NLS+ W KE   Y+  ++      +++GNK
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 129
Query: 130 VDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKILDT 179
            D + ER V+ +E   + ++ G   + E SAK   NV   FEE V +IL T
Sbjct: 130 TDIK-ERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILAT 179

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GDSGVGK+SL+  + +  F  +   TIG DF  K V V  + + + IWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +D E+ +V TK+       +    + E SAK  +NV+Q F+ +    L
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GDSGVGK+SL+  + +  F  +   TIG DF  K V V  + + + IWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +D E+ +V TK+       +    + E SAK  +NV+Q F+ +    L
Sbjct: 127 IDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 106/173 (61%), Gaps = 12/173 (6%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLK-LAIWDTAG 71
           + K++++GDSGVGK+SL+  + +D + ++   TIG DF  K V V G K+  + +WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK----LLVG 127
           QERF++L  ++YRGA   ++VYDVT   +F N+   W  E  L   N +  +    +++G
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEF-LVHANVNSPETFPFVILG 125
Query: 128 NKVD-KESERVVTKKEGINFAREYG--CLFIECSAKTRVNVQQCFEELVLKIL 177
           NK+D +ES+++V++K     A+  G   LF+  SAK  +NV   FEE+    L
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSAL 177

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GDSGVGK+SL+  + +  F  +   TIG DF  K V V  + + + IWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +D E+ +V TK+       +    + E SAK  +NV+Q F+ +    L
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 96/161 (59%), Gaps = 7/161 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   +    K ID   T +  D I +LVGNK D
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT----KWIDDVRTERGSDVIIMLVGNKTD 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
              +R V+ +EG   A+E   +FIE SAK   NV+Q F  +
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           +FK+++IGDS VGK+ L   F +  F + +  TIGVDF+ + VD+ G+++K+ +WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 73  ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           ERFR ++   YYR    ++ VYD T   +F +L   W +E   +    D  ++LVGNK D
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNKCD 147
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKT---RVNVQQCFEELVLKI 176
             S   V       FA  +     E SAK      +V+  F  L  K+
Sbjct: 148 LRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           +FK+++IGDS VGK+ L   F +  F + +  TIGVDF+ + VD+ G+++K+ +WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 73  ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           ERFR ++   YYR    ++ VYD+T   +F +L   W +E   +    D  ++LVGNK D
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCD 138
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKT 161
             S   V       FA  +     E SAK 
Sbjct: 139 LRSAIQVPTDLAQKFADTHSMPLFETSAKN 168

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 5/168 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GDSGVGK+SL+  + +  F  +   TIG DF  K V V  + + + IWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +D E+ +V TK+       +    + E SAK  +NV+Q F+ +    L
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL-VGNKVD 131
           E +  +  +Y+R  +G ++V+ +T  ++FT  ++ + ++I      +D I LL VGNK D
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSD 124
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            E  R V  +E  + A E+G  ++E SAKTR NV + F +L+ +I
Sbjct: 125 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL-VGNKVD 131
           E +  +  +Y+R  +G ++V+ +T  ++FT  ++ + ++I      +D I LL VGNK D
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSD 120
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            E  R V  +E  + A E+G  ++E SAKTR NV + F +L+ +I
Sbjct: 121 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 135
Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 123
Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 131
Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 121
Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 99/164 (60%), Gaps = 3/164 (1%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 123
Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 97/178 (54%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+   PT+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 97/178 (54%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+   PT+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 6/180 (3%)
Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKL 62
           +SA+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI 64
Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 121
Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
            +L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 122 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 99/180 (55%), Gaps = 6/180 (3%)
Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLL-LSFTSDNFEELSPTIGVDFKVKYVDVGGKKL 62
           +SA+Q E    FKL+++GD G GK++ +    T ++ ++   T+GV+            +
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPI 64
Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 121
Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
            +L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 122 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 127
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 128 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 176

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 124
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 124
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 126
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+ +DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S R V  K+  + AR YG  FIE SAKTR  V   F  LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S R V  K+  + AR YG  FIE SAKTR  V   F  LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE++  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 18/191 (9%)
Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKL 62
           SS +      + K +++GD  VGK+ LL+S+ +D F EE  PT+   + V  V VGGK+ 
Sbjct: 8   SSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS-VTVGGKQY 66
Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
            L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y+ N    
Sbjct: 67  LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-- 124
Query: 123 KLLVGNKVDKE------------SERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCF 169
            LL+G ++D               E+ +  ++G   A+E G C ++ECSA T+  ++  F
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
Query: 170 EELVLKILDTP 180
           +E ++ IL TP
Sbjct: 185 DEAIIAIL-TP 194

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 96/181 (53%), Gaps = 6/181 (3%)
Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKK 61
            S A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            
Sbjct: 1   GSMAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 60
Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +K  +WDTAG E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++ 
Sbjct: 61  IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENI 117
Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
             +L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+
Sbjct: 118 PIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 175
Query: 182 L 182
           L
Sbjct: 176 L 176

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K++++G+  VGKSS++  +    F ++   TIGVDF  + + V  + ++L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            F  +T +YYRGAQ  ++V+  T R++F  +S  W +++   +   D    LV NK+D  
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKV--VAEVGDIPTALVQNKIDLL 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            +  +  +E    A+     F   S K  +NV + F+ L  K L
Sbjct: 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 6/169 (3%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD G GK++ +    +  FE+    T+GV+            +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDIK 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 121 DRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  ++V GK+++LA+WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPII--LVGNKKDLRQ 143
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A       ++ECSAKT+  V++ FE
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  ++V GK+++LA+WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRQ 143
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A       ++ECSAKT+  V++ FE
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAG E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 121
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 121
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 92/167 (55%), Gaps = 5/167 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQ 72
            K++++GD   GK+SL   F  + F ++   TIG+DF ++ + + G   + L IWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVW--AKEIDLYSTNQDCIKLLVGNKV 130
                +   Y  GAQG+++VYD+T   +F NL D +   K++   S  Q  +  LVGNK+
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVA-LVGNKI 125
Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           D E  R +  ++ + F +E G      SAKT  +V  CF+++  +IL
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F  +  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +       Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V   EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 124 DEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 13/185 (7%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKL 64
            S        K + +GD  VGK+ +L+ +TS+ F  +  PT+  +F    V V G+ + L
Sbjct: 1   GSHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGQIVNL 59
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE +  L    YRGA   ++ + +  + ++ N+   W  E+  ++ N   +  
Sbjct: 60  GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV-- 117
Query: 125 LVGNKVDKESER--------VVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLK 175
           LVG K+D   ++        V+T  +G    ++ G   +IECS+KT+ NV+  F+  +  
Sbjct: 118 LVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 177
Query: 176 ILDTP 180
           +L  P
Sbjct: 178 VLQPP 182

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 13/188 (6%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD G GK++ +    +  FE+    TIGV+           ++K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVK 129
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKN 193
             +V  K + I F R+    + + SAK+  N ++ F  L  K+   P L    S  L   
Sbjct: 130 ERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPAL--- 184
Query: 194 IFKQKPPE 201
                PPE
Sbjct: 185 ----APPE 188

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 15/169 (8%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GD G GK+SLL+ F    F E  +PT+   + V  + V GK + L IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQDD 94
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-----------K 123
           +  L   +Y  A  +++ +DVT  ++F N+ + W  E++ +      I           K
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDK 154
Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEE 171
            LV NK+ +     VT   G   AR  G + ++ECSA+   NV   F+E
Sbjct: 155 SLV-NKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ V  ++V GK+++LA+WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 126
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD G GK++ +    +  FE+    T+GV+            +K  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDIK 123
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 124 DRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 170

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  ++V GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRQ 123
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A       ++ECSAKT+  V++ FE
Sbjct: 124 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 15/176 (8%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
             K + +GD  VGK+ +L+S+TS+ F  +  PT+  +F    V V G  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  L    YRGA   I+ + +  + ++ N++  W  E+  Y+     I  LVG K+D 
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDL 122
Query: 133 ESER----------VVTKKEGINFAREYGC-LFIECSAKTRVNVQQCFEELVLKIL 177
             ++           +T  +G    +  G  ++IECS+KT+ NV+  F+  +  +L
Sbjct: 123 RDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD G GK++ +    +  FE+    TIGV+           ++K  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVK 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +V  K + I F R+    + + SAK+  N ++ F  L  K+   P L
Sbjct: 123 ERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 169

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD G GK++ +    +  FE+    TIGV+           ++K  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVK 121
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +V  K + I F R+    + + SAK+  N ++ F  L  K+   P L
Sbjct: 122 ERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 168

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 92/181 (50%), Gaps = 4/181 (2%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIG-VDFKVKYVDVGGKKL 62
             S +  +  +K+ +IGD GVGK++ +       FE+  + T+G V+  V ++D  G  +
Sbjct: 2   PGSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVI 61
Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           K  +WDTAGQE+   L   YY GA G I+ +DVT R T  NL+  W KE      N+  I
Sbjct: 62  KFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPI 120
Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
            ++  NK+D ++ + ++KK  +   +     + E SAKT  N    F  L       P L
Sbjct: 121 -VVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179
Query: 183 L 183
           +
Sbjct: 180 I 180

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L    Y     I+M + V   D+  N+ + W  E+  +  N   I  LV NK D  S
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII--LVANKKDLRS 143
Query: 135 ERVV------TKKEGIN-------FAREYGCLFIECSAKTRVNVQQCFE 170
           +  V       K+E +          R     ++ECSAKT+  V++ FE
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFE 192

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 15/176 (8%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
             K + +GD  VGK+ LL+S+TS+ F  +  PT+  +F    V V G  + L +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  L    YRGA   I+ + +  + ++ N+S  W  E+  Y+     +  LVG K+D 
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV--LVGTKLDL 124
Query: 133 ESER----------VVTKKEGINFAREYGC-LFIECSAKTRVNVQQCFEELVLKIL 177
             ++           +T  +G    +  G   +IECS+K++ NV+  F+  +  +L
Sbjct: 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Query: 27  KSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG 85
           KS+L + F    F  +  PTI  D   K   +  +  +L I DTAGQE F  +   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 86  AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN 145
            +G ++V+ VT R +F  +   + ++I       +   +L+GNK D + +R VT++EG  
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQ 135
Query: 146 FAREYGCLFIECSAKTRVNVQQCFEELV 173
            AR+    ++E SAK R+NV Q F ELV
Sbjct: 136 LARQLKVTYMEASAKIRMNVDQAFHELV 163

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 27  KSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG 85
           KS+L + F    F  +  PTI  D   K   V G   +L I DTAGQE F  +   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 86  AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN 145
             G ++V+ +  R +F  +  ++ + + +   + D   +LVGNK D ES+R V + E   
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLESQRQVPRSEASA 139
Query: 146 FAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           F   +   + E SAK R+NV + FE+LV  +
Sbjct: 140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 181 SL 182
            +
Sbjct: 181 PV 182

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 181 SLLAEGSKGL 190
            +     K L
Sbjct: 181 PVKKRKRKCL 190

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 64
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 122
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182
Query: 181 SL 182
            +
Sbjct: 183 PV 184

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 124
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 125 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 184
Query: 181 SL 182
            +
Sbjct: 185 PV 186

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 DTP 180
           + P
Sbjct: 178 EPP 180

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 181 SL 182
            +
Sbjct: 181 PV 182

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 119
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 120 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
Query: 178 DTP 180
           + P
Sbjct: 180 EPP 182

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 181 SL 182
            +
Sbjct: 181 PV 182

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 72
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 127
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 128 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 187
Query: 178 DTP 180
           + P
Sbjct: 188 EPP 190

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++G   VGKSSL + F    F +   PTI   F  K + V G++  L + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +     +Y     G I+VY VT   +F  +  +  K +D+    Q  I +LVGNK D   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 125
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
           ERV++ +EG   A  +   F+E SAK        F  ++L+
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 120
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 121 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
Query: 178 DTP 180
           + P
Sbjct: 181 EPP 183

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 DTP 180
           + P
Sbjct: 178 EPP 180

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 120
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 121 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
Query: 178 DTP 180
           + P
Sbjct: 181 EPP 183

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 118
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 119 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 178
Query: 178 DTP 180
           + P
Sbjct: 179 EPP 181

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 DTP 180
           + P
Sbjct: 178 EPP 180

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 DTP 180
           + P
Sbjct: 178 EPP 180

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 124
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
Query: 178 DTP 180
           + P
Sbjct: 185 EPP 187

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 124
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
Query: 178 DTP 180
           + P
Sbjct: 185 EPP 187

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++G   VGKSSL + F    F +   PTI   F  K + V G++  L + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +     +Y     G I+VY VT   +F  +  +  K +D+    Q  I +LVGNK D   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 125
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
           ERV++ +EG   A  +   F+E SAK        F  ++L+
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 DTP 180
           + P
Sbjct: 178 EPP 180

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++G   VGKSSL + F    F +   PTI   F  K + V G++  L + DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +     +Y     G I+VY VT   +F  +  +  K +D+    Q  I +LVGNK D   
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 120
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
           ERV++ +EG   A  +   F+E SAK        F  ++L+
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++G   VGKSSL + F    F +   PTI   F  K + V G++  L + DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +     +Y     G I+VY VT   +F  +  +  K +D+    Q  I +LVGNK D   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 123
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
           ERV++ +EG   A  +   F+E SAK        F  ++L+
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 43/200 (21%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGK------------- 60
           +K +++G+S VGKSS++L  T D F E  + TIG  F    V++                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 61  ------------------------KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT 96
                                    +K  IWDTAGQER+ ++   YYRGA   I+V+D++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 97  RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIE 156
             +T  + +  W  ++ + S   + I +LV NK+DK   + V   E   +A++   LFI+
Sbjct: 128 NSNTL-DRAKTWVNQLKISS---NYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQ 182
Query: 157 CSAKTRVNVQQCFEELVLKI 176
            SAKT  N++  F  L  +I
Sbjct: 183 TSAKTGTNIKNIFYMLAEEI 202

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 15/172 (8%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
             K + +GD  VGK+ +L+S+T + F  +  PT+  +F    V V G  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  L    YRGA   ++ + +  + ++ N+   W  E+  Y+     +  LVG K+D 
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIV--LVGTKLDL 122
Query: 133 ESER----------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
             ++           +T  +G    +  G + ++ECS+KT+ NV+  F+  +
Sbjct: 123 RDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 81
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 139
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 140 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 89
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 147
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 69
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 127
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 128 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 72
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 130
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 131 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  +   F E+  PT+  ++ V  V+V G++++LA+WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y  +  +++ + +   D+  N+ + W  E+  +   Q    +LVG KVD   
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC--QGVPIILVGCKVDLRN 128
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    +E ++ VT +EG + A + G   + ECSAKT   V++ FE
Sbjct: 129 DPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  +     LLVG K+D  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 121
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  ARE G + ++ECSA T+  ++  F+E +  +L
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  +     LLVG K+D  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 121
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  ARE G + ++ECSA T+  ++  F+E +  +L
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  +     LLVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  ARE G + ++ECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 181 SL 182
            +
Sbjct: 181 PV 182

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 181 SL 182
            +
Sbjct: 181 PV 182

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S R V  K+  + AR YG  FIE SAKTR  V   F  LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S R V  K+  + AR YG  FIE SAKTR  V   F  LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 11/179 (6%)
Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFK--VKYVDV 57
           M++ +   +      K++++GD  VGK+ LLL+F+         PT+  +F   +KY + 
Sbjct: 10  MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKN- 68
Query: 58  GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST 117
             ++  L +WDTAGQE +  L    Y  +  +++ + V  R +F N+S  W  EI  Y  
Sbjct: 69  --EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID 126
Query: 118 NQDCIKLLVGNKVD--KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
               +  LVG KVD  K+    VTK+EG +  ++ GC+ +IE S+  ++ + + FE+ V
Sbjct: 127 TAKTV--LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 183

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 D 178
           +
Sbjct: 178 E 178

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAG 71
            K++++GD  VGK+ LLL+F+         PT+  +F   +KY +   ++  L +WDTAG
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKN---EEFILHLWDTAG 79
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QE +  L    Y  +  +++ + V  R +F N+S  W  EI  Y      +  LVG KVD
Sbjct: 80  QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV--LVGLKVD 137
Query: 132 --KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
             K+    VTK+EG +  ++ GC+ +IE S+  ++ + + FE+ V
Sbjct: 138 LRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 182

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 121
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 122 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
Query: 178 D 178
           +
Sbjct: 182 E 182

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 DTP 180
           + P
Sbjct: 178 EPP 180

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 119
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 120 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
Query: 178 D 178
           +
Sbjct: 180 E 180

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 D 178
           +
Sbjct: 178 E 178

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 121
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 122 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
Query: 178 DTP 180
           + P
Sbjct: 182 EPP 184

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
Query: 178 D 178
           +
Sbjct: 178 E 178

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++    E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 89
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 147
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 23/180 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 17/181 (9%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  L    Y      ++ + +    +F ++   W  E+  +  N   I  LVG K+D 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDL 271
Query: 133 ESER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDT 179
             ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Query: 180 P 180
           P
Sbjct: 332 P 332

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 17/181 (9%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  L    Y      ++ + +    +F ++   W  E+  +  N   I  LVG K+D 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDL 271
Query: 133 ESER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDT 179
             ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Query: 180 P 180
           P
Sbjct: 332 P 332

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 17/181 (9%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  L    Y      ++ + +    +F ++   W  E+  +  N   I  LVG K+D 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDL 271
Query: 133 ESER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDT 179
             ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Query: 180 P 180
           P
Sbjct: 332 P 332

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 123
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 124 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +++ + G  GVGKSSL+L F    F E   PT+   ++ + +        L I DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +           I+VY +T R +   L  ++ +  ++    +    +LVGNK D+ 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
             R V   E    AR + C F+E SAK   NV++ F+EL+
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 139
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S R V  K+  + AR YG  FIE SAKTR  V   F  LV +I
Sbjct: 140 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 89
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 147
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 19/196 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKN 193
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I              +  
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI-------------RQHK 167
Query: 194 IFKQKPPEADAAASGC 209
           + K  PP  D +  GC
Sbjct: 168 LRKLNPP--DESGPGC 181

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++ +++ ++I     + D   +LVGNK D  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLP 139
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  K+    A+ YG  FIE SAKTR  V+  F  LV +I
Sbjct: 140 T-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 D 178
           +
Sbjct: 178 E 178

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  P +  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 D 178
           +
Sbjct: 178 E 178

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 125
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 125
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++    E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 D 178
           +
Sbjct: 178 E 178

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 69
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 127
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 128 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F E+  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 36/201 (17%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 64
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRD-------------------TFTNLSDVWAKEIDL 114
            +  L    Y    G     D+T R                    +F N+   W  E+  
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 115 YSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGCL-FIECSAKT 161
           +  N   I  LVG K+D   ++             +T  +G+  A+E G + ++ECSA T
Sbjct: 125 HCPNTPII--LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 182
Query: 162 RVNVQQCFEELVLKILDTPSL 182
           +  ++  F+E +  +L  P +
Sbjct: 183 QRGLKTVFDEAIRAVLCPPPV 203

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 26  GKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 84
           GKS+L + F +  F E+  PTI  DF  K ++V      L I DTAG E+F ++   Y +
Sbjct: 15  GKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIK 73
Query: 85  GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI 144
             QG I+VY +  + +F ++  +  + I +    +  + +LVGNKVD ESER V+  EG 
Sbjct: 74  NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV-ILVGNKVDLESEREVSSSEGR 132
Query: 145 NFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             A E+GC F+E SAK++  V + F E+V ++
Sbjct: 133 ALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  P+I   ++ K V + G+   L I DTAGQE
Sbjct: 10  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 69  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 126
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 127 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGN+ D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNRCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++G   VGK+SL   F    F E   PT+   +  K V +G  +  L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L  S+  G  G ++VY VT   +F  +  ++ K  + +   +  + +LVGNK D   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKADLSP 143
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ER V   EG   A  +G  F+E SA+     Q  F +++ +I
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  P+I   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 4/160 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGK++L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
               +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F ++  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 5/163 (3%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL + G +GVGKS+L++ F +  F  E  PT+   ++ +   +  + + + I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQED 88
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
                  + R  +G ++VYD+T R +F  +  +    +D     ++   +LVGNK D + 
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPL-KNILDEIKKPKNVTLILVGNKADLDH 146
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKT-RVNVQQCFEELVLKI 176
            R V+ +EG   A E  C F ECSA T   N+ + F EL  ++
Sbjct: 147 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 125
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 17/173 (9%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K +++GD  VGK+SL++S+T++ +  E  PT   +F    V V G+ ++L + DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDE 80
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK----- 129
           F  L    Y      ++ + V    +F N+S+ W  EI  +      I  LVG +     
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII--LVGTQSDLRE 138
Query: 130 -------VDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVL 174
                  +DK  E+ V ++     A E     +IECSA T+ N+++ F+  ++
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIV 191

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 4/173 (2%)
Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           ++SA   E    +KL+++GD GVGKS+L + F    F  E  PTI  D  +K+ ++  + 
Sbjct: 7   ATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQW 65
Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      +  
Sbjct: 66  AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESF 124
Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK-TRVNVQQCFEELV 173
             +LV NKVD    R VT+ +G   A +Y   +IE SAK   +NV + F +LV
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 4/173 (2%)
Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           ++SA   E    +KL+++GD GVGKS+L + F    F +E  PTI   ++ K+ ++  + 
Sbjct: 7   ATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYR-KHTEIDNQW 65
Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      +  
Sbjct: 66  AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESF 124
Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK-TRVNVQQCFEELV 173
             +LV NKVD    R VT+ +G   A +Y   +IE SAK   +NV + F +LV
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V  K + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    ++ N+   W  E+  +  +   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E   + ++ECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 4/173 (2%)
Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           ++SA   E    +KL+++GD GVGKS+L + F    F ++  PTI  D  +K+ ++  + 
Sbjct: 7   ATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQW 65
Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      +  
Sbjct: 66  AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESF 124
Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK-TRVNVQQCFEELV 173
             +LV NKVD    R VT+ +G   A +Y   +IE SAK   +NV + F +LV
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V  K + L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 68
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    ++ N+   W  E+  +  +   I  LVG K+D  
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDLR 126
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E   + ++ECSA T+  ++  F+E +  +L
Sbjct: 127 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V  K + L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 69
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    ++ N+   W  E+  +  +   I  LVG K+D  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDLR 127
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E   + ++ECSA T+  ++  F+E +  +L
Sbjct: 128 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 4/173 (2%)
Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           ++SA   E    +KL+++GD GVGKS+L + F    F  +  PTI  D  +K+ ++  + 
Sbjct: 2   ATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQW 60
Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      +  
Sbjct: 61  AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESF 119
Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK-TRVNVQQCFEELV 173
             +LV NKVD    R VT+ +G   A +Y   +IE SAK   +NV + F +LV
Sbjct: 120 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 172

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           L++++++GD GVGK+SL   F      +L   +G D   + + V G+   L + DT   E
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 74  RFRTLTS--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ-DCIKL-LVGNK 129
           +     S  S  +G    ++VY +  R +F + S++    I L  T+Q D + + LVGNK
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASEL---RIQLRRTHQADHVPIILVGNK 120
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170
            D    R V+ +EG   A  + C FIE SA  + NV + FE
Sbjct: 121 ADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 17/158 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GDS  GK++LL  F  D F E   PT+  ++   + ++  ++++L++WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 83
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D   
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 141
Query: 132 ---------KESERVVTKKEGINFAREYG-CLFIECSA 159
                       +  V+  +G N A++ G   +IECSA
Sbjct: 142 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 17/158 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GDS  GK++LL  F  D F E   PT+  ++   + ++  ++++L++WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 88
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D   
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 146
Query: 132 ---------KESERVVTKKEGINFAREYG-CLFIECSA 159
                       +  V+  +G N A++ G   +IECSA
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 17/158 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GDS  GK++LL  F  D F E   PT+  ++   + ++  ++++L++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 67
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 125
Query: 132 ---------KESERVVTKKEGINFAREYG-CLFIECSA 159
                       +  V+  +G N A++ G   +IECSA
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 3/148 (2%)
Query: 27  KSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG 85
           KSSL+L F    F +   PTI   ++ + +        L I DT G  +F  +       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 86  AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN 145
               I+V+ VT + +   L  ++   + +  + +D   +LVGNK D E++R V  +E   
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 146 FAREYGCLFIECSAKTRVNVQQCFEELV 173
            A+E+ C F+E SAK   NV++ F+EL+
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQELL 166

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           ++K+L++G  GVGKS+L   F        +   G  +    V V G++  L ++D   Q+
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIV-VDGEEASLMVYDIWEQD 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
             R L           ++VY VT + +F   S++    + L    Q  D   +LVGNK D
Sbjct: 66  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               R V+  EG   A  + C FIE SA    NVQ  FE +V +I
Sbjct: 123 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 6/165 (3%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           ++K+L++G  GVGKS+L   F        +   G  +  + + V G++  L ++D   Q+
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
             R L           ++VY VT + +F   S++    + L    Q  D   +LVGNK D
Sbjct: 66  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               R V+  EG   A  + C FIE SA    NVQ  FE +V +I
Sbjct: 123 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 15  FKLLMIGDSGVGKSSL--LLSFTSDNFEELSPTIGVDFKVKYVDVGGKK---LKLAIWDT 69
           +++++IG+ GVGKS+L  + +   D+ +     +G D   + + V G+    + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVG 127
            G+  +  L     +     ++VY +T R +F   S++    I L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D    R V+  EG   A  + C FIE SA  + NV++ FE +V ++
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 6/165 (3%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           ++K+L++G  GVGKS+L   F        +   G  +  + + V G++  L ++D   Q+
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
             R L           ++VY VT + +F   S++    + L    Q  D   +LVGNK D
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 117
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               R V+  EG   A  + C FIE SA    NVQ  FE +V +I
Sbjct: 118 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 17  LLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           L ++G  G GKS+L + F +  F  E  P +   +  +   V  + + L + DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 76  RTLTSSYYRGAQGIIMVYDV------TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           R     Y   A   ++VY V          ++  L  + AKE     T +    LL+GNK
Sbjct: 83  RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKE-----TQRSIPALLLGNK 136
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCFEELV 173
           +D    R VTK EG+  A  +GCLF E SA     +VQ  F E V
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Query: 8   QQEFDYLFKLLMIGDSGVGKSSLLLSF---TSDNFEELSPTIGVDFKVKYVDVGGKKLKL 64
           Q + D +FK++++G+SGVGKS+L  +F     D+  E  P    D   + + V  +++ L
Sbjct: 17  QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRIMVDKEEVTL 74
Query: 65  AIWDTAGQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
            ++D   Q +    L     +     ++V+ VT R +F+ + +   + +     + D   
Sbjct: 75  VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPV 133
Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +LVGNK D    R V+ +EG + A    C  IE SA    N ++ FE  V +I
Sbjct: 134 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 12  DYLFKLLMIGDSGVGKSSLLLSF---TSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           D +FK++++G+SGVGKS+L  +F     DN  E+  +   D   + + V  +++ L ++D
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENS--EDTYERRIMVDKEEVTLIVYD 67
Query: 69  TAGQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
              Q +    L     +     ++V+ VT R +F+ + +   + +     + D   +LVG
Sbjct: 68  IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVG 126
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D    R V+ +EG + A    C  IE SA    N ++ FE  V +I
Sbjct: 127 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSL--LLSFTSDNFEELSPTIGVDFKVKYVDVGGKK 61
           S  S +  +  +++++IG+ GVGKS+L  + +   D+ +     +G D   + + V G+ 
Sbjct: 27  SVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 86
Query: 62  ---LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN 118
              + L +W+  G+  +  L     +     ++VY +T R +F   S++    I L    
Sbjct: 87  ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRAR 141
Query: 119 Q--DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           Q  D   +LVGNK D    R V+  EG   A  + C FIE SA  + NV++ FE +V ++
Sbjct: 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 15  FKLLMIGDSGVGKSSL--LLSFTSDNFEELSPTIGVDFKVKYVDVGGKK---LKLAIWDT 69
           +++++IG+ GVGKS+L  + +   D+ +     +G D   + + V G+    + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVG 127
            G+  +  L     +     ++VY +T R +F   S++    I L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D    R V+  EG   A  + C FIE SA  + NV++ FE +V ++
Sbjct: 122 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G  G GK+++L            PTIG  F V+ V    K +   +WD  GQ+R
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 56
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK----LLVGNKV 130
            R+L   YYR  +G+I V D   R          A+E+     N+D ++    L+  NK 
Sbjct: 57  IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 111
Query: 131 D---KESERVVTKKEGINFAREYGCLFIECSAKT 161
           D     S   +T+K G++  R     FI+ +  T
Sbjct: 112 DLPEAMSAAEITEKLGLHSIRNR-PWFIQATCAT 144

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G  G GK+++L            PTIG  F V+ V    K +   +WD  GQ+R
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 73
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK----LLVGNKV 130
            R+L   YYR  +G+I V D   R          A+E+     N+D ++    L+  NK 
Sbjct: 74  IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 128
Query: 131 D---KESERVVTKKEGINFAREYGCLFIECSAKT 161
           D     S   +T+K G++  R     FI+ +  T
Sbjct: 129 DLPEAMSAAEITEKLGLHSIRNR-PWFIQATCAT 161

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G  G GK+++L            PTIG  F V+ V    K +   +WD  GQ+R
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 73
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD----CIKLLVGNKV 130
            R+L   YYR  +G+I V D   R          A+E+     N+D     + L+  NK 
Sbjct: 74  IRSLWRHYYRNTEGVIFVIDSNDRSRIGE-----AREVMQRMLNEDELRNAVWLVFANKQ 128
Query: 131 D---KESERVVTKKEGINFAREYGCLFIECSAKT 161
           D     S   +T+K G++  R     FI+ +  T
Sbjct: 129 DLPEAMSAAEITEKLGLHSIRNR-PWFIQSTCAT 161

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ+R
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFTVWDVGGQDR 73
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   Y++  QG+I V D   R+    ++D   K + L    +D + LL  NK D
Sbjct: 74  IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKML-LVDELRDAVLLLFANKQD 129

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 7/167 (4%)
Query: 14  LFKLLMIGDSGVGKSSLLLSF---TSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           +FK++++G+SGVGKS+L  +F     D+  E+  +   D   + + V  +++ L ++D  
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS--EDTYERRIMVDKEEVTLIVYDIW 59
Query: 71  GQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
            Q +    L     +     ++V+ VT R +F+ + +   + +     + D   +LVGNK
Sbjct: 60  EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVGNK 118
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            D    R V+ +EG + A    C  IE SA    N ++ FE  V +I
Sbjct: 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 15  FKLLMIGDSGVGKSSL--LLSFTSDNFEELSPTIGVDFKVKYVDVGGKK---LKLAIWDT 69
           +++++IG+ GVGKS+L  + +   D+ +     +G D   + + V G+    + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVG 127
            G+  +  L     +     ++VY +T R +F   S++    I L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D    R V+  EG   A  +   FIE SA  + NV++ FE +V ++
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 378
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 434

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+++L     D + E   PT+  ++    ++   ++++L++WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +     LL+G K D   
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDLRT 128
Query: 132 ---------KESERVVTKKEGINFAREYGC-LFIECSAKT-RVNVQQCFEELVLKILDTP 180
                     + +  ++ ++G   A++ G  +++E SA T   ++   F    +  L+ P
Sbjct: 129 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 188
Query: 181 SLLAEGSK 188
           S L + S 
Sbjct: 189 SPLPQKSP 196

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +LLM+G    GK+++L  F  ++ + +SPT+G  F +K ++  G   KL IWD  GQ+ 
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKS 72
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRR 98
           R+   +Y+    G+I V D   R
Sbjct: 73 LRSYWRNYFESTDGLIWVVDSADR 96

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+++L     D + E   PT+  ++    ++   ++++L++WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +     LL+G K D   
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDLRT 129
Query: 132 ---------KESERVVTKKEGINFAREYGC-LFIECSAKT-RVNVQQCFEELVLKILDTP 180
                     + +  ++ ++G   A++ G  +++E SA T   ++   F    +  L+ P
Sbjct: 130 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 189
Query: 181 SLLAEGSK 188
           S L + S 
Sbjct: 190 SPLPQKSP 197

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+++L     D + E   PT+  ++    ++   ++++L++WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +     LL+G K D   
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRT 145
Query: 132 ---------KESERVVTKKEGINFAREYGC-LFIECSAKT-RVNVQQCFEELVLKILDTP 180
                     + +  ++ ++G   A++ G  +++E SA T   ++   F    +  L+ P
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205
Query: 181 SLLAEGSK 188
           S L + S 
Sbjct: 206 SPLPQKSP 213

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +LLM+G    GK+++L  F  ++ + +SPT+G  F +K ++  G   KL IWD  GQ+ 
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKS 74
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRR 98
           R+   +Y+    G+I V D   R
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADR 98

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +LLM+G    GK+++L  F  ++ + +SPT+G  F +K ++  G   KL IWD  GQ+ 
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKS 74
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRR 98
           R+   +Y+    G+I V D   R
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADR 98

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 14/160 (8%)
Query: 11  FDYLF-----KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLA 65
           F+ LF     ++LM+G    GK+++L            PTIG  F V+ V+   + +   
Sbjct: 9   FNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIG--FNVETVEF--RNISFT 64
Query: 66  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL 125
           +WD  GQ++ R L   YY    G+I V D   R+   +  +   + I+     +D I L+
Sbjct: 65  VWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEEL-KDAIILV 123
Query: 126 VGNKVD---KESERVVTKKEGINFAREYGCLFIECSAKTR 162
             NK D     S   VT+K  +N  RE    FI+ +  TR
Sbjct: 124 FANKQDLPNAMSAAEVTEKLHLNTIRERNW-FIQSTCATR 162

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+S+L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD----CIKLLVGNKV 130
            R L   YY+  Q II V D   RD         A+E  +   N+D     I L+  NK 
Sbjct: 74  IRPLWRHYYQNTQAIIFVVDSNDRDRIGE-----AREELMKMLNEDEMRNAILLVFANKH 128
Query: 131 D 131
           D
Sbjct: 129 D 129

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 69
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 70  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 125

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 68
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 124

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 112

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 112

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 76
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   Y++  QG+I V D   RD      D   + ++     +D + L+  NK D
Sbjct: 77  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQD 132

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
          + +LLM+G    GK+++L  F  ++ + +SPT+G  F +K ++  G   KL IWD  G +
Sbjct: 1  MLRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG--FNIKTLEHRG--FKLNIWDVGGLK 56
Query: 74 RFRTLTSSYYRGAQGIIMVYDVTRR 98
            R+   +Y+    G+I V D   R
Sbjct: 57 SLRSYWRNYFESTDGLIWVVDSADR 81

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 8/137 (5%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFTVWDVGGQDK 85
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
            R L   Y++  QG+I V D   R+     +D   K +      +D + L+  NK D  +
Sbjct: 86  IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ-EDELRDAVLLVFANKQDMPN 144
Query: 135 ERVV---TKKEGINFAR 148
              V   T K G+   R
Sbjct: 145 AMPVSELTDKLGLQHLR 161

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 19/155 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK-VKYVDVGGKKLKLAIWDTAGQE 73
            ++LM+G  G GK+++L            PTIG + + V+Y ++        +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNI-----SFTVWDVGGQD 72
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD----CIKLLVGNK 129
           R R+L   YY   +G+I V D   R          A+E+     N+D       L+  NK
Sbjct: 73  RIRSLWRHYYCNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELCNAAWLVFANK 127
Query: 130 VD---KESERVVTKKEGINFAREYGCLFIECSAKT 161
            D     S   +T+K G++  R     FI+ +  T
Sbjct: 128 QDLPEAMSAAEITEKLGLHSIRNRP-WFIQATCAT 161

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            +L ++G    GK++ +    S  F E++ PT+G  F ++ V  G   +K  IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR++   Y RG   I+ + D   R+      +     +D     Q    L++GNK D  
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL-QGIPVLVLGNKRDLP 137
Query: 134 S---ERVVTKKEGINFA--REYGCLFIECSAKTRVNV 165
           +   E+ + +K  ++    RE  C  I C  K  +++
Sbjct: 138 NALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDI 174

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKL 64
           SA  QE     ++L++G    GK++LL    S++   ++PT G  F +K V   G   KL
Sbjct: 12  SAPDQEV----RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKL 63
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF 101
            +WD  GQ + R    SY+     +I V D   R  F
Sbjct: 64  NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 100

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKL 64
           SA  QE     ++L++G    GK++LL    S++   ++PT G  F +K V   G   KL
Sbjct: 11  SAPDQEV----RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKL 62
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF 101
            +WD  GQ + R    SY+     +I V D   R  F
Sbjct: 63  NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 99

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++L +G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++ 
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKI 57
Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 58  RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN-DREXRDAIILIFANKQD 112

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 221
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRD 99
            R L   Y++  QG+I V D   R+
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRE 246

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  G ++
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 59
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 60  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 115

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  G ++
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 69
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 70  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 125

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  G ++
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 58
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 59  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 114

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 1  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 56
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRRD 99
           R L   Y++  QG+I V D   R+
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRE 81

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 72
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRRD 99
           R L   Y++  QG+I V D   R+
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRE 97

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRRD 99
           R L   Y++  QG+I V D   R+
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRE 98

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++L++G  G GK+++L            PTIG  F V+ +    K LKL +WD  GQ  
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIG--FNVETLSY--KNLKLNVWDLGGQTS 74
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN---QDCIKLLVGNKVD 131
            R     YY     +I V D T +D  +  S    KE+ L       QD   L+  NK D
Sbjct: 75  IRPYWRCYYADTAAVIFVVDSTDKDRMSTAS----KELHLMLQEEELQDAALLVFANKQD 130
Query: 132 K 132
           +
Sbjct: 131 Q 131

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++L++G    GK++LL    S++   ++PT G  F +K V   G   KL +WD  GQ + 
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKI 61
Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTF 101
           R    SY+     +I V D   R  F
Sbjct: 62  RPYWRSYFENTDILIYVIDSADRKRF 87

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLA 65
            S QE     K++++G    GK+++L  F+ +     SPTIG + +   ++      +  
Sbjct: 18  GSHQEH----KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN----NTRFL 69
Query: 66  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD 99
           +WD  GQE  R+  ++YY   + +I+V D T R+
Sbjct: 70  MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 103

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
          K++++G    GK+++L  F+ +     SPTIG + +    ++     +  +WD  GQE  
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESL 73
Query: 76 RTLTSSYYRGAQGIIMVYDVTRRD 99
          R+  ++YY   + +I+V D T R+
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
          K++++G    GK+++L  F+ +     SPTIG + +    ++     +  +WD  GQE  
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESL 73
Query: 76 RTLTSSYYRGAQGIIMVYDVTRRD 99
          R+  ++YY   + +I+V D T R+
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            K++++G    GK+++L  F+ +     SPTIG + +   ++      +  +WD  GQE 
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 77
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRD 99
            R+  ++YY   + +I+V D T R+
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRE 102

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
          K++++G    GK+++L  F  +     SPTIG + +    ++  K     +WD  GQE  
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVE----EIVVKNTHFLMWDIGGQESL 73
Query: 76 RTLTSSYYRGAQGIIMVYDVTRRD 99
          R+  ++YY   + II+V D   R+
Sbjct: 74 RSSWNTYYSNTEFIILVVDSIDRE 97

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            +L ++G    GK++ +    S  F E++ PT+G  F ++ +  G   +KL  WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
           RFR++   Y RG   I+ + D   ++      +     +D     Q    L++GNK D  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL-QGIPVLVLGNKRDLP 137
Query: 132 ---KESERVVTKKEGINFA----REYGCLFIECSAKTRVNV 165
               E E +    E +N +    RE  C  I C  K  +++
Sbjct: 138 GALDEKELI----EKMNLSAIQDREICCYSISCKEKDNIDI 174

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 25 VGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 84
           GK+++L  F  ++ + +SPT+G  F +K ++  G   KL IWD  GQ+  R+   +Y+ 
Sbjct: 29 AGKTTILKKFNGEDVDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 85 GAQGIIMVYDVTRR 98
             G+I V D   R
Sbjct: 85 STDGLIWVVDSADR 98

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            +L ++G    GK++ +    S  F E++ PT+G  F ++ +  G   +KL  WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 87
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR++   Y RG   I+ + D   ++      +     +D     Q    L++GNK D  
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLD-KPQLQGIPVLVLGNKRDLP 146
Query: 134 S---ERVVTKKEGINFA--REYGCLFIECSAKTRVNV 165
               E+ + +K  ++    RE  C  I C  K  +++
Sbjct: 147 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 183

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  G ++
Sbjct: 3  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGLDK 58
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRRD 99
           R L   Y++  QG+I V D   R+
Sbjct: 59 IRPLWRHYFQNTQGLIFVVDSNDRE 83

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++L++G    GK++LL    S++   ++PT G  F +K V   G   KL +WD  G  + 
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGGLRKI 61
Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTF 101
           R    SY+     +I V D   R  F
Sbjct: 62  RPYWRSYFENTDILIYVIDSADRKRF 87

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL---SPTIGVDFK---VKYVDVGGKKLKLAIWDT 69
           KL ++G++G GK++LL         +L   S T+G+D K   ++  D   + L L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AG+E F +    +       + VYD+++     +    W   I   +++   I  LVG  
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGTH 119
Query: 130 VDKESER 136
           +D   E+
Sbjct: 120 LDVSDEK 126

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL---SPTIGVDFK---VKYVDVGGKKLKLAIWDT 69
           KL ++G++G GK++LL         +L   S T+G+D K   ++  D   + L L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AG+E F +    +       + VYD+++     +    W   I   +++   I  LVG  
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGTH 121
Query: 130 VDKESER 136
           +D   E+
Sbjct: 122 LDVSDEK 128

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDN---FEELSPTIGVDFKVKYVDVGGK--KLKLAIWDTA 70
           K+ ++G++ VGKS+L+  FTS      ++ + T GV+  V  V +      ++L + DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD--CIKLLVGN 128
           G + ++   S Y+ G    I+V+DV+  ++F +    W + +     +++     +LV N
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVAN 140
Query: 129 KVDKESER 136
           K D   +R
Sbjct: 141 KTDLPPQR 148

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++L++G  G GK+++L            PTIG  F V+ V    K LK  +WD  GQ  
Sbjct: 3  MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGQTS 58
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRRD 99
           R     YY     +I V D   RD
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRD 83

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++L++G  G GK+++L            PTIG  F V+ V    K LK  +WD  G   
Sbjct: 5  MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTS 60
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRRD 99
           R     YY     +I V D   RD
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRD 85

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
          ++L++G  G GK+++L            PTIG  F V+ V    K LK  +WD  G    
Sbjct: 9  RILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTSI 64
Query: 76 RTLTSSYYRGAQGIIMVYDVTRRD 99
          R     YY     +I V D   RD
Sbjct: 65 RPYWRCYYSNTDAVIYVVDSCDRD 88

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 25/128 (19%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFE--ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            +L +G    GK++++      N +   + PTIG   +          L   ++D +GQ 
Sbjct: 23  HVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE----KFKSSSLSFTVFDMSGQG 78
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIK 123
           R+R L   YY+  Q II V D + R          DT  N  D+  + I +         
Sbjct: 79  RYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPI--------- 129
Query: 124 LLVGNKVD 131
           L   NK+D
Sbjct: 130 LFFANKMD 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-103
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-99
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	5e-99
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	6e-99
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	7e-99
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	7e-99
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	4e-98
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	5e-98
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-97
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-97
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-97
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-97
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	6e-97
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	3e-96
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	7e-96
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	9e-96
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	9e-96
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-95
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-95
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	5e-95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-93
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-92
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-91
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-91
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	7e-91
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-90
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-89
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-88
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-87
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-87
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-87
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-86
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	4e-86
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-84
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	6e-83
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-81
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	3e-81
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	8e-81
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-79
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-78
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-76
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	5e-76
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	3e-75
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	3e-75
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	6e-75
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-74
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-74
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	8e-74
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	4e-73
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-72
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-72
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	5e-72
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	7e-72
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	5e-71
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-70
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-68
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-67
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	9e-67
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-65
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-62
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	9e-62
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	3e-61
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	4e-61
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	5e-58
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-53
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-49
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-49
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	5e-49
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	5e-47
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	4e-46
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-46
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	7e-45
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-44
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-44
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	7e-44
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	8e-43
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	9e-42
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	8e-32
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-29
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-23
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-20
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-20
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	8e-20
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-19
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-19
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-19
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-19
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	9e-19
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-18
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	4e-18
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-16
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-16
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	3e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-15
3llu_A	196	RAS-related GTP-binding protein C; structural geno	4e-15
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	7e-15
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-13
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-12
2ged_A	193	SR-beta, signal recognition particle receptor beta	1e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	4e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	1e-04
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	3e-04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	4e-04

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  294 bits (755), Expect = e-103
 Identities = 111/188 (59%), Positives = 133/188 (70%), Gaps = 3/188 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
            SS   ++     K+L+IG+SGVGKSSLLL FT D F  EL+ TIGVDFKVK + V G K
Sbjct: 4   GSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK 63

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
            KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L + W  E++ Y T  D 
Sbjct: 64  AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDI 122

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           + +LVGNK+DKE  R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP 
Sbjct: 123 VNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPG 181

Query: 182 LLAEGSKG 189
           L    ++ 
Sbjct: 182 LWESENQN 189

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  285 bits (731), Expect = 2e-99
 Identities = 86/180 (47%), Positives = 115/180 (63%), Gaps = 3/180 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
            +   Q  FDY+FKLL+IG+S VGK+S L  +  D F      T+G+DFKVK V    K+
Sbjct: 12  ENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKR 71

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS   + 
Sbjct: 72  VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYS-WDNA 129

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
             +LVGNK D E ERVV  ++G   A + G  F E SAK  ++V+Q FE LV  I D  S
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  284 bits (729), Expect = 5e-99
 Identities = 97/195 (49%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGG 59
           + S S+   E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ G
Sbjct: 3   LGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           K +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ ++
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SE 120

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
           +  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I   
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180

Query: 180 PSLLAEGSKGLKKNI 194
               A      K N+
Sbjct: 181 MGPGATAGGAEKSNV 195

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  284 bits (729), Expect = 6e-99
 Identities = 94/205 (45%), Positives = 127/205 (61%), Gaps = 5/205 (2%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
            E+DYLFKLL+IG+SGVGKS LLL F+ D +  +   TIGVDFK+K V++ GK +KL IW
Sbjct: 3   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +   W +EID Y+     +KLLVG
Sbjct: 63  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM-WLQEIDRYA-TSTVLKLLVG 120

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS--LLAE 185
           NK D + +RVV       FA      F+E SA    NV+  F  +  +I ++ S   L E
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180

Query: 186 GSKGLKKNIFKQKPPEADAAASGCC 210
            ++  +         ++     GCC
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGCC 205

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  283 bits (727), Expect = 7e-99
 Identities = 83/177 (46%), Positives = 115/177 (64%), Gaps = 3/177 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           SS    +  DY+FKLL+IG+S VGK+S L  +  D+F      T+G+DFKVK V    K+
Sbjct: 11  SSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR 70

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQER+RT+T++YYRGA G +++YD+  +++F  + D WA +I  YS   + 
Sbjct: 71  IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYS-WDNA 128

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
             +LVGNK D E ERVV  ++G   A + G  F E SAK  +NV+Q FE LV  I +
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  284 bits (728), Expect = 7e-99
 Identities = 88/204 (43%), Positives = 122/204 (59%), Gaps = 10/204 (4%)

Query: 8   QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAI 66
              FDY+FK+L+IG+S VGK+S L  +  D+F      T+G+DFKVK +    K++KL I
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 67  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
           WDTAG ER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS   +   LLV
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYS-WDNAQVLLV 119

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAE- 185
           GNK D E ERVV+ + G   A   G  F E SAK  +NV+Q FE LV  I +  S   + 
Sbjct: 120 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDT 179

Query: 186 ------GSKGLKKNIFKQKPPEAD 203
                 G+K   +   +Q PP  D
Sbjct: 180 ADPAVTGAKQGPQLTDQQAPPHQD 203

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  282 bits (723), Expect = 4e-98
 Identities = 76/175 (43%), Positives = 109/175 (62%), Gaps = 3/175 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
           +      E+DYLFK+++IGDSGVGKS+LL  FT + F   S  TIGV+F  + + V GK 
Sbjct: 18  AMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +K  IWDTAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+   W KE+  ++ + + 
Sbjct: 78  IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSNI 135

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + +LVGNK D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  281 bits (722), Expect = 5e-98
 Identities = 93/177 (52%), Positives = 121/177 (68%), Gaps = 3/177 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
             S+   E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK 
Sbjct: 22  PMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT 81

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++ 
Sbjct: 82  IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENV 139

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
            KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I  
Sbjct: 140 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  280 bits (719), Expect = 1e-97
 Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 4/175 (2%)

Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS--PTIGVDFKVKYVDVGGKKLK 63
           +    +D  FK++++GDSGVGK+ LL+ F    F   +   T+G+DF+ K +DV G K+K
Sbjct: 2   SGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK 61

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           L +WDTAGQERFR++T +YYR A  ++++YDVT + +F N+   W  EI  Y+   D   
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQA-WLTEIHEYA-QHDVAL 119

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           +L+GNKVD   ERVV +++G   A+EYG  F+E SAKT +NV   F  +  ++  
Sbjct: 120 MLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  280 bits (719), Expect = 1e-97
 Identities = 85/179 (47%), Positives = 123/179 (68%), Gaps = 4/179 (2%)

Query: 2   DSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGK 60
                S +  D+  ++++IG  GVGK+SL+  FT D F E    T+GVDFK+K V++ GK
Sbjct: 14  LVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK 73

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           K++L IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y+ ++D
Sbjct: 74  KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SED 131

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKILD 178
              LLVGNK+D E++R +T+++G  FA++  G  F E SAK   NV + F +LV  IL 
Sbjct: 132 AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  279 bits (717), Expect = 2e-97
 Identities = 83/172 (48%), Positives = 114/172 (66%), Gaps = 4/172 (2%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
           +++D+LFKLL+IGDSGVGKSSLLL F  + F      TIGVDFK++ V++ G+K+KL IW
Sbjct: 4   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W  EI+    +    ++LVG
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEINQNCDD--VCRILVG 120

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
           NK D    +VV  ++   FA + G    E SAK  VNV++ F  +   +L  
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA 172

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  279 bits (717), Expect = 2e-97
 Identities = 85/176 (48%), Positives = 114/176 (64%), Gaps = 3/176 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
            S+ +   + Y+FK ++IGD GVGKS LL  FT   F  +   TIGV+F  + ++V G+K
Sbjct: 4   GSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 63

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +LS  W  +    + N + 
Sbjct: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLT-NPNT 121

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           + +L+GNK D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI 
Sbjct: 122 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  280 bits (718), Expect = 2e-97
 Identities = 72/177 (40%), Positives = 114/177 (64%), Gaps = 3/177 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
               S +++D+LFK+++IG++GVGK+ L+  FT   F      TIGVDF +K V++ G+K
Sbjct: 15  VPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 74

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQERFR++T SYYR A  +I+ YD+T  ++F  L + W +EI+ Y+ +   
Sbjct: 75  VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYA-SNKV 132

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           I +LVGNK+D    R V+++    F+      ++E SAK   NV++ F +L  +++ 
Sbjct: 133 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 189

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  279 bits (715), Expect = 6e-97
 Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 6/179 (3%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKL 62
           S   +     +FK+++IGDS VGK+ L   F +  F +    TIGVDF+ + VD+ G+++
Sbjct: 10  SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 69

Query: 63  KLAIWDTAGQERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           K+ +WDTAGQERFR ++   YYR    ++ VYD+T   +F +L   W +E   +    D 
Sbjct: 70  KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDI 128

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR---VNVQQCFEELVLKIL 177
            ++LVGNK D  S   V       FA  +     E SAK      +V+  F  L  K+ 
Sbjct: 129 PRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  277 bits (711), Expect = 3e-96
 Identities = 85/177 (48%), Positives = 120/177 (67%), Gaps = 3/177 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
            SS       YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + V++ GK+
Sbjct: 10  HSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQ 69

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   +S + + 
Sbjct: 70  IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHS-SSNM 127

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           + +L+GNK D ES R V ++EG  FARE+G +F+E SAKT  NV++ F     +I  
Sbjct: 128 VIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  277 bits (711), Expect = 4e-96
 Identities = 96/210 (45%), Positives = 129/210 (61%), Gaps = 6/210 (2%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           + +SS + + +D + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ G
Sbjct: 7   VSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 66

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           KK+KL +WDTAGQERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N 
Sbjct: 67  KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-ND 124

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
           +   LLVGNK D E  RVVT  +G   A+E G  FIE SAK   NV + F  L   I + 
Sbjct: 125 EAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183

Query: 180 --PSLLAEGSKGLKKNIFKQKPPEADAAAS 207
              + L     G + NI         + ++
Sbjct: 184 IDSNKLVGVGNGKEGNISINSGSGNSSKSN 213

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  275 bits (707), Expect = 7e-96
 Identities = 80/171 (46%), Positives = 118/171 (69%), Gaps = 3/171 (1%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
           + +DYLFKLL+IGDSGVGK+ +L  F+ D F      TIG+DFK++ +++ GK++KL IW
Sbjct: 3   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++G
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILG 120

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           NK D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I  
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 171

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  276 bits (708), Expect = 9e-96
 Identities = 72/181 (39%), Positives = 113/181 (62%), Gaps = 4/181 (2%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
            S    +++D+LFKL+++GD+ VGK+ ++  F +  F E    TIGVDF +K +++ GK+
Sbjct: 18  GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQERFRT+T SYYR A G I+ YD+T+R +F ++   W +++  Y+   + 
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNI 135

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
           ++LL+GNK D    R V+  E  + A  Y  L  IE SAK   NV++ F  +  +++   
Sbjct: 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195

Query: 181 S 181
            
Sbjct: 196 G 196

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  276 bits (707), Expect = 9e-96
 Identities = 69/177 (38%), Positives = 107/177 (60%), Gaps = 3/177 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
                 ++++++FK+++IG+SGVGK++LL  FT + F   S  TIGV+F  + V +G   
Sbjct: 14  LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 73

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +K  IWDTAG ER+R +TS+YYRGA G ++V+D+T+  T+  +   W KE+  ++     
Sbjct: 74  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER-WLKELYDHA-EATI 131

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           + +LVGNK D    R V  +E   FA   G LF+E SA    NV+  FE ++ +I  
Sbjct: 132 VVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  276 bits (709), Expect = 1e-95
 Identities = 82/224 (36%), Positives = 119/224 (53%), Gaps = 18/224 (8%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
           SS     ++D LFK+++IGDSGVGKS+LL  FT + F   S  TIGV+F  + +++ GK+
Sbjct: 2   SSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +K  IWDTAGQER+R +TS+YYRGA G ++VYD+++  ++ N +  W  E+   + + + 
Sbjct: 62  IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLSELRENA-DDNV 119

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
              L+GNK D    R V  +E   FA+E   LF E SA    NV + FEEL+  I    S
Sbjct: 120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179

Query: 182 ---------------LLAEGSKGLKKNIFKQKPPEADAAASGCC 210
                            A    G   ++         A  + CC
Sbjct: 180 KHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  276 bits (707), Expect = 1e-95
 Identities = 64/185 (34%), Positives = 107/185 (57%), Gaps = 12/185 (6%)

Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDV------ 57
           S S  ++DYL K L +GDSGVGK+S+L  +T   F      T+G+DF+ K V        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61

Query: 58  ----GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEID 113
                G+++ L +WDTAG ERFR+LT++++R A G ++++D+T   +F N+ + W  ++ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQ 120

Query: 114 LYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           +++ +++   +L GNK D E +R V ++E    A +YG  + E SA    N+    E L+
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180

Query: 174 LKILD 178
             I+ 
Sbjct: 181 DLIMK 185

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  274 bits (704), Expect = 2e-95
 Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 3/174 (1%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIW 67
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K ++VGGK +KL IW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFR++T SYYRGA G ++VYD+T R+T+  L++ W  +  + + +Q+ + +L G
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCG 122

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           NK D +++R VT  E   FA+E   +F+E SA T  NV++ F +   KIL+   
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  275 bits (705), Expect = 2e-95
 Identities = 78/175 (44%), Positives = 111/175 (63%), Gaps = 3/175 (1%)

Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLK 63
                  D+LFK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V+VGGK +K
Sbjct: 16  PRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVK 75

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           L IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+ +L+  W  +    + + + + 
Sbjct: 76  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAA-WLTDARTLA-SPNIVV 133

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           +L GNK D + ER VT  E   FA+E   +F+E SA T  NV++ F +    IL+
Sbjct: 134 ILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  274 bits (704), Expect = 5e-95
 Identities = 63/188 (33%), Positives = 108/188 (57%), Gaps = 12/188 (6%)

Query: 2   DSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGK 60
                   ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V    +
Sbjct: 13  GLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 72

Query: 61  ----------KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK 110
                     K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ + W  
Sbjct: 73  GPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMS 131

Query: 111 EIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170
           ++   +  ++   +L+GNK D   +R V +++    A +YG  + E SA T  NV++  E
Sbjct: 132 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVE 191

Query: 171 ELVLKILD 178
            L+  I+ 
Sbjct: 192 TLLDLIMK 199

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  269 bits (690), Expect = 2e-93
 Identities = 90/168 (53%), Positives = 113/168 (67%), Gaps = 4/168 (2%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ GKK+KL IWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRT+T++YYRGA GII+VYD+T   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           D E  RVVT  +G   A+E G  FIE SAK   NV + F  L   I +
Sbjct: 119 DME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  270 bits (692), Expect = 2e-93
 Identities = 76/172 (44%), Positives = 109/172 (63%), Gaps = 3/172 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDT 69
           +DYLFK+++IGDSGVGKS+LL  FT + F   S  TIGV+F  + + V GK +K  IWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+   W KE+  ++ + + + +LVGNK
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSNIVIMLVGNK 119

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
            D    R V   E   FA +    FIE SA    NV++ F+ ++ +I    S
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS 171

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  266 bits (682), Expect = 3e-92
 Identities = 63/170 (37%), Positives = 101/170 (59%), Gaps = 3/170 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDT 69
             Y FK++++G+  VGK+SL+L +  + F +    T+G  F  K +++GGK++ LAIWDT
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQERF  L   YYR + G I+VYD+T  D+F  + + W KE+       +    +VGNK
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKML-GNEICLCIVGNK 120

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
           +D E ER V+ +E  ++A   G      SAK    +++ F +L  ++++T
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  265 bits (680), Expect = 2e-91
 Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 9/183 (4%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
             SA        +K+++ GD+ VGKSS L+    + F E +S T+GVDF++K + V G++
Sbjct: 17  RGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGER 76

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L +WDTAGQERFR++  SY+R A G++++YDVT   +F N+ + W   I+  + ++  
Sbjct: 77  TVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIEDAA-HETV 134

Query: 122 IKLLVGNKVD------KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
             +LVGNK D       E ++ V    G   A  YG LF E SAK   N+ +    L  +
Sbjct: 135 PIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE 194

Query: 176 ILD 178
           +  
Sbjct: 195 VKK 197

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  264 bits (677), Expect = 2e-91
 Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 4/168 (2%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           +   K++++G+  VGKSS++  +    F ++   TIGVDF  + + V  + ++L +WDTA
Sbjct: 3   EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQE F  +T +YYRGAQ  ++V+  T R++F  +S  W +++     +      LV NK+
Sbjct: 63  GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKVVAEVGD--IPTALVQNKI 119

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           D   +  +  +E    A+     F   S K  +NV + F+ L  K L 
Sbjct: 120 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  265 bits (680), Expect = 3e-91
 Identities = 71/209 (33%), Positives = 110/209 (52%), Gaps = 4/209 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
           S+          FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + 
Sbjct: 5   STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           ++L +WDTAG ERFR+L  SY R +   ++VYD+T  ++F   +  W  ++       D 
Sbjct: 65  VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-WIDDVRTER-GSDV 122

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           I +LVGNK D   +R V+ +EG   A+E   +FIE SAK   NV+Q F  +   +    S
Sbjct: 123 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 182

Query: 182 LLAEGSKGLKKNIFKQKPPEADAAASGCC 210
              + S+    +I  +KP E   +  GC 
Sbjct: 183 -TQDRSREDMIDIKLEKPQEQPVSEGGCL 210

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  263 bits (674), Expect = 7e-91
 Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 5/175 (2%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGK-KLKLAIWD 68
                K++++GD   GK+SL   F  + F +    TIG+DF ++ + + G   + L IWD
Sbjct: 3   HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWD 62

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLV 126
             GQ     +   Y  GAQG+++VYD+T   +F NL D W   +   S       +  LV
Sbjct: 63  IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALV 121

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           GNK+D E  R +  ++ + F +E G      SAKT  +V  CF+++  +IL    
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKL 176

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  263 bits (674), Expect = 3e-90
 Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 4/201 (1%)

Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGV-DFKVKYVDVGGKKL 62
             S +  +  +K+ +IGD GVGK++ +       FE+    T+G  +  V ++D  G  +
Sbjct: 2   PGSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVI 61

Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           K  +WDTAGQE+   L   YY GA G I+ +DVT R T  NL+  W KE      N +  
Sbjct: 62  KFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGN-EAP 119

Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
            ++  NK+D ++ + ++KK  +   +     + E SAKT  N    F  L       P L
Sbjct: 120 IVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179

Query: 183 LAEGSKGLKKNIFKQKPPEAD 203
           +   +  L+           +
Sbjct: 180 IFVSNVNLEPTEVNYDYHSPE 200

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  259 bits (664), Expect = 2e-89
 Identities = 68/174 (39%), Positives = 105/174 (60%), Gaps = 7/174 (4%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
             LFK++++GD GVGKSSL+  + ++ F  +L  TIGV+F  K ++V G  + + IWDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC---IKLLVG 127
           GQERFR+L + +YRG+   ++ + V    +F NLS+ W KE   Y+  ++      +++G
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILG 123

Query: 128 NKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
           NK+D   ER V+ +E   + R+ G   + E SAK   NV   FEE V ++L T 
Sbjct: 124 NKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  257 bits (659), Expect = 1e-88
 Identities = 68/179 (37%), Positives = 96/179 (53%), Gaps = 3/179 (1%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKL 62
           S A+        KL+++GD G GKSSL+L F  D F E    TIG  F  + + V    +
Sbjct: 2   SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV 61

Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           K  IWDTAGQER+ +L   YYRGA   I+V+DVT + +F      W +E+     N + +
Sbjct: 62  KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK-WVQELQAQG-NPNMV 119

Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
             L GNK D    R VT ++   +A+E G  F+E SAKT  NV++ F E+  ++     
Sbjct: 120 MALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQP 178

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  254 bits (651), Expect = 2e-87
 Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 3/166 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+ ++GD+GVGKSS++  F  D+F+    PTIG  F  K V    +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR L   YYRG+   I+VYD+T+ +TF+ L + W +E+  +      +  + GNK D  
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHG-PPSIVVAIAGNKCDLT 124

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
             R V +++  ++A     +F+E SAK  +N+ + F E+  +I  T
Sbjct: 125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 170

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  255 bits (654), Expect = 2e-87
 Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIW 67
                L K++++GDSGVGK+SL+  + +  F      TIG DF  K V V  + + + IW
Sbjct: 3   SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC---IKL 124
           DTAGQERF++L  ++YRGA   ++V+DVT  +TF  L   W  E  + ++ +D      +
Sbjct: 63  DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFV 121

Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLA 184
           ++GNK+D E+ +V TK+       +    + E SAK  +NV+Q F+ +    L   +   
Sbjct: 122 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET-EV 180

Query: 185 EGSKGLKKNIFKQKPPEADAAASGCC 210
           E      + I   K   A A+A  C 
Sbjct: 181 ELYNEFPEPIKLDKNERAKASAESCS 206

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  256 bits (655), Expect = 2e-87
 Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 6/180 (3%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKL 62
           +SA+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI 64

Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +++     N    
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCEN--IP 121

Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
            +L GNKVD +  +V    + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 122 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  252 bits (646), Expect = 2e-86
 Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 3/180 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
           S    +       K+ ++GD+GVGKSS++  F  D+F+    PTIG  F  K V  G + 
Sbjct: 12  SGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNEL 71

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
            K  IWDTAGQERF +L   YYRG+   ++VYD+T++D+F  L   W KE+  +   ++ 
Sbjct: 72  HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHG-PENI 129

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           +  + GNK D    R V  K+   +A   G + +E SAK  +N+++ F+ +  +I     
Sbjct: 130 VMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  251 bits (643), Expect = 4e-86
 Identities = 66/174 (37%), Positives = 98/174 (56%), Gaps = 3/174 (1%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKL 62
           SS         FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + +
Sbjct: 4   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 63

Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           +L +WDTAGQERFR+L  SY R +   ++VYD+T  ++F   S  W  ++       D I
Sbjct: 64  RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK-WIDDVRTER-GSDVI 121

Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            +LVGNK D   +R V+ +EG   A+E   +FIE SAK   NV+Q F  +   +
Sbjct: 122 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  247 bits (632), Expect = 1e-84
 Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 3/166 (1%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
             FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QER+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   + + + +  L GNK D
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQA-SPNIVIALSGNKAD 122

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
             ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+ 
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  243 bits (622), Expect = 6e-83
 Identities = 63/178 (35%), Positives = 104/178 (58%), Gaps = 8/178 (4%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKL-KLAI 66
                + K++++GDSGVGK+SL+  + +D + +    TIG DF  K V V G K+  + +
Sbjct: 3   SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62

Query: 67  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS---TNQDCIK 123
           WDTAGQERF++L  ++YRGA   ++VYDVT   +F N+   W  E  +++   + +    
Sbjct: 63  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPF 121

Query: 124 LLVGNKVD-KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDT 179
           +++GNK+D +ES+++V++K     A+  G +     SAK  +NV   FEE+    L  
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  240 bits (614), Expect = 2e-81
 Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 3/176 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
            +   Q + D +FK++++G+SGVGKS+L  +F     +    P    D   + + V  ++
Sbjct: 12  ENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE 71

Query: 62  LKLAIWDTAGQERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           + L ++D   Q      L     +     ++V+ VT R +F+ + +     +     + D
Sbjct: 72  VTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHD 130

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
              +LVGNK D    R V+ +EG + A    C  IE SA    N ++ FE  V +I
Sbjct: 131 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  239 bits (613), Expect = 3e-81
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 10/186 (5%)

Query: 2   DSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFT--SDNFEELS-PTIGVDFKVKYVDVG 58
                         K+ ++G++ VGKS+L+  FT     F +    T GV+  V  V + 
Sbjct: 8   KEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIP 67

Query: 59  GKKLKLAIW--DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS 116
              + + ++  DTAG + ++   S Y+ G    I+V+DV+  ++F +    W + +    
Sbjct: 68  DTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKA-WFELLKSAR 126

Query: 117 --TNQDCIKLLVGNKVDKESER-VVTKKEGINFAREYGCLFIECSAK-TRVNVQQCFEEL 172
               +    +LV NK D   +R  V      ++A      F + SA     +    F  +
Sbjct: 127 PDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSI 186

Query: 173 VLKILD 178
                 
Sbjct: 187 ATTFYR 192

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  238 bits (610), Expect = 8e-81
 Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 8/211 (3%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           M ++    Q    L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDG 59

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           +++++ I DTAGQE +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     ++
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDE 118

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
           +   LLVGNK D E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I   
Sbjct: 119 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA- 177

Query: 180 PSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
                +     +KN  K++   A      CC
Sbjct: 178 ----RKMEDSKEKNGKKKRKSLAKRIRERCC 204

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  233 bits (598), Expect = 3e-79
 Identities = 60/177 (33%), Positives = 102/177 (57%), Gaps = 3/177 (1%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           +       Q    L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G
Sbjct: 5   ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDG 63

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           +++++ I DTAGQE +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     ++
Sbjct: 64  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDE 122

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +   LLVGNK D E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 123 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  231 bits (592), Expect = 2e-78
 Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 3/168 (1%)

Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
                 KL+++G  GVGKS+L + F    F  +  PTI  D   K   V G   +L I D
Sbjct: 5   PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILD 63

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQE F  +   Y R   G ++V+ +  R +F  +      +I       D   +LVGN
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGN 122

Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D ES+R V + E   F   +   + E SAK R+NV + FE+LV  +
Sbjct: 123 KADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  227 bits (581), Expect = 2e-76
 Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 43/208 (20%)

Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLK----- 63
           E    +K +++G+S VGKSS++L  T D F E +  TIG  F    V++    +K     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 64  --------------------------------LAIWDTAGQERFRTLTSSYYRGAQGIIM 91
                                             IWDTAGQER+ ++   YYRGA   I+
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 92  VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG 151
           V+D++  +T       W  ++     + + I +LV NK+DK  +  V   E   +A++  
Sbjct: 123 VFDISNSNTLDRAKT-WVNQLK---ISSNYIIILVANKIDKN-KFQVDILEVQKYAQDNN 177

Query: 152 CLFIECSAKTRVNVQQCFEELVLKILDT 179
            LFI+ SAKT  N++  F  L  +I   
Sbjct: 178 LLFIQTSAKTGTNIKNIFYMLAEEIYKN 205

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  225 bits (575), Expect = 5e-76
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 3/165 (1%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           +FK++++G+SGVGKS+L  +F     +         D   + + V  +++ L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 73  ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
                 L     +     ++V+ VT R +F+ + +     +     + D   +LVGNK D
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSD 120

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               R V+ +EG + A    C  IE SA    N ++ FE  V +I
Sbjct: 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  224 bits (573), Expect = 3e-75
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 10/205 (4%)

Query: 7   SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLA 65
           S  E    +++++ G  GVGKSSL+L F    F +   PTI   ++ + +        L 
Sbjct: 1   SMPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQ 59

Query: 66  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL 125
           I DT G  +F  +           I+V+ VT + +   L  ++   + +  + +D   +L
Sbjct: 60  ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVML 119

Query: 126 VGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAE 185
           VGNK D E++R V  +E    A+E+ C F+E SAK   NV++ F+EL+         L  
Sbjct: 120 VGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNI 178

Query: 186 GSKGLKKNIFKQKPPEADAAASGCC 210
             K   K     +         G C
Sbjct: 179 DGKRSGKQKRTDRV-------KGKC 196

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  223 bits (570), Expect = 3e-75
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 2/163 (1%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           ++K+L++G  GVGKS+L   F        +   G  +  + + V G++  L ++D   Q+
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
             R L           ++VY VT + +F   S+    ++       D   +LVGNK D  
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             R V+  EG   A  + C FIE SA    NVQ  FE +V +I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  222 bits (568), Expect = 6e-75
 Identities = 59/164 (35%), Positives = 100/164 (60%), Gaps = 3/164 (1%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 121

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  221 bits (566), Expect = 2e-74
 Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 4/176 (2%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           ++SA   E    +KL+++GD GVGKS+L + F    F ++  PTI  D  +K+ ++  + 
Sbjct: 7   ATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQW 65

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L + DTAGQE F  +   Y R   G ++VY VT + +F ++   + + I      +  
Sbjct: 66  AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDR-FHQLILRVKDRESF 124

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT-RVNVQQCFEELVLKI 176
             +LV NKVD    R VT+ +G   A +Y   +IE SAK   +NV + F +LV  I
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  221 bits (565), Expect = 3e-74
 Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
              K+ ++G   VGKSSL + F    F +   PTI   F  K + V G++  L + DTAG
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAG 63

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           Q+ +     +Y     G I+VY VT   +F  +  +  K +D+    Q  I +LVGNK D
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKD 122

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSK 188
              ERV++ +EG   A  +   F+E SAK        F  ++L+        ++G  
Sbjct: 123 LHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKS 179

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  219 bits (561), Expect = 8e-74
 Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 4/163 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLA 121

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 122 -ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  217 bits (556), Expect = 4e-73
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +K++++G  GVGKS+L + F +  F E+  PTI  DF  K ++V      L I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F ++   Y +  QG I+VY +  + +F ++      +I      +    +LVGNKVD E
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           SER V+  EG   A E+GC F+E SAK++  V + F E+V ++
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  217 bits (554), Expect = 1e-72
 Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 4/163 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F +++  + ++I     + D   +LVGNK D  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLP 139

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             R V  K+    A+ YG  FIE SAKTR  V+  F  LV +I
Sbjct: 140 -TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  217 bits (555), Expect = 2e-72
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 3/175 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           +            K++++G   VGK+SL   F    F E   PT+   +  K V +G  +
Sbjct: 13  NLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDE 71

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L + DTAGQ+ +  L  S+  G  G ++VY VT   +F  +     +++         
Sbjct: 72  FHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRV 130

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             +LVGNK D   ER V   EG   A  +G  F+E SA+     Q  F +++ +I
Sbjct: 131 PVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  215 bits (551), Expect = 5e-72
 Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 4/179 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 122

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKK 192
             R V  K+  + AR YG  FIE SAKTR  V   F  LV +I      +++  K  KK
Sbjct: 123 -SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKK 180

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  215 bits (549), Expect = 7e-72
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +++ + G  GVGKSSL+L F    F E   PT+   ++ + +        L I DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +           I+VY +T R +   L  ++ +  ++    +    +LVGNK D+ 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             R V   E    AR + C F+E SAK   NV++ F+EL+   
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  212 bits (542), Expect = 5e-71
 Identities = 66/164 (40%), Positives = 100/164 (60%), Gaps = 4/164 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F E+  PTI   ++ K V+V  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG  +VY +T + TF +L D   ++I      +D   +LVGNK D E
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLE 121

Query: 134 SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV K++G N AR++  C F+E SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  211 bits (540), Expect = 1e-70
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 3/165 (1%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           L++++++GD GVGK+SL   F      +L   +G D   + + V G+   L + DT   E
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63

Query: 74  RFRTLTS--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           +     S  S  +G    ++VY +  R +F + S+    ++           +LVGNK D
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKAD 122

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               R V+ +EG   A  + C FIE SA  + NV + FE +V ++
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  207 bits (530), Expect = 1e-68
 Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 10/180 (5%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF---EELSPTIGVDFKVKYVDVGG 59
            S  S +  +  +++++IG+ GVGKS+L   F   +     +       D   + + V G
Sbjct: 26  DSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLMVDG 84

Query: 60  KK---LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS 116
           +    + L +W+  G+  +  L     +     ++VY +T R +F   S+    ++    
Sbjct: 85  ESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRAR 141

Query: 117 TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             +D   +LVGNK D    R V+  EG   A  + C FIE SA  + NV++ FE +V ++
Sbjct: 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  203 bits (519), Expect = 4e-67
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 5/178 (2%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
            ++            KL + G +GVGKS+L++ F +  F  E  PT+   ++     +  
Sbjct: 15  TENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDD 73

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           + + + I DTAGQE        + R  +G ++VYD+T R +F  +       +D     +
Sbjct: 74  EVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPK 131

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT-RVNVQQCFEELVLKI 176
           +   +LVGNK D +  R V+ +EG   A E  C F ECSA T   N+ + F EL  ++
Sbjct: 132 NVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  201 bits (514), Expect = 9e-67
 Identities = 73/168 (43%), Positives = 99/168 (58%), Gaps = 6/168 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            KL+++G++ VGKSS++L F S++F E   PTIG  F  + V +    +K  IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
           RF +L   YYR AQ  ++VYDVT+  +F      W KE+   + ++D I  LVGNK+D  
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARH-WVKELHEQA-SKDIIIALVGNKIDXL 121

Query: 132 -KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
            +  ER V ++EG   A E G LF E SAKT  NV   F  +  KI  
Sbjct: 122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  198 bits (505), Expect = 4e-65
 Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKL 62
           +   Q   +    L ++G  G GKS+L + F +  F  E  P +   +      V  + +
Sbjct: 13  NLYFQGPLEV--NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPV 69

Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY--STNQD 120
            L + DTA  +  R     Y   A   ++VY V  R +F + S  + + + L+   T + 
Sbjct: 70  HLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSS-YLELLALHAKETQRS 127

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCFEELVLKI 176
              LL+GNK+D    R VTK EG+  A  +GCLF E SA     +VQ  F E V + 
Sbjct: 128 IPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  191 bits (488), Expect = 1e-62
 Identities = 36/178 (20%), Positives = 74/178 (41%), Gaps = 16/178 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS---PTIGVDFKVKYVDVGGKK---LKLAIWD 68
            KL+++G++G GK++LL         +L     T+G+D K   + +  K+   L L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
            AG+E F +    +       + VYD+++     +    W   I   +++     +LVG 
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASS--SPVILVGT 120

Query: 129 KVDKESER---VVTKKEGINFAREYGCLFI-----ECSAKTRVNVQQCFEELVLKILD 178
            +D   E+       K       + G   I       + +    + +  + ++ + L+
Sbjct: 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  189 bits (483), Expect = 9e-62
 Identities = 30/167 (17%), Positives = 70/167 (41%), Gaps = 10/167 (5%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            K+ ++G+   GKS+L+  + +  + +     G  FK K + V G+   L I D  G   
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFK-KEIVVDGQSYLLLIRDEGGPPE 79

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--K 132
            +     +      ++ V+ +    +F  + + +   +  +    +   +LVG +     
Sbjct: 80  LQ-----FAAWVDAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 133 ESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKILD 178
            + RV+        + +   C + E  A   +NV++ F+++  K++ 
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  188 bits (479), Expect = 3e-61
 Identities = 39/180 (21%), Positives = 74/180 (41%), Gaps = 16/180 (8%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
           S  S  E     +L ++GD+  GKSSL+  F + +++ L  T    +K K + V G+   
Sbjct: 1   SMRSIPEL----RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLVDGQTHL 55

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY----STNQ 119
           + I + AG    +     +   A  +I V+ +   ++F  +S     ++           
Sbjct: 56  VLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGL 109

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINF-AREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
               +   +++   S RVV         A    C + E  A   +NV + F+E+  K++ 
Sbjct: 110 ALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT 169

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  188 bits (479), Expect = 4e-61
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFT--SDNFEELSPTIGVDFKVKYVDVGGKK---LKLAIWD 68
            +++++IG+ GVGKS+L   F    D+ +     +G D   + + V G+    + L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
             G+  +  L     +     ++VY +T R +F   S+    ++      +D   +LVGN
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGN 122

Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D    R V+  EG   A  +   FIE SA  + NV++ FE +V ++
Sbjct: 123 KSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  180 bits (459), Expect = 5e-58
 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 7/184 (3%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           M++ +   +      K++++GD  VGK+ LLL+F+         PT+  +F    +    
Sbjct: 10  MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKN 68

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           ++  L +WDTAGQE +  L    Y  +  +++ + V  R +F N+S  W  EI  Y    
Sbjct: 69  EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT- 127

Query: 120 DCIKLLVGNKVD--KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKI 176
               +LVG KVD  K+    VTK+EG +  ++ GC+ +IE S+  ++ + + FE+ V  I
Sbjct: 128 -AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186

Query: 177 LDTP 180
               
Sbjct: 187 FSNK 190

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  177 bits (451), Expect = 3e-53
 Identities = 40/191 (20%), Positives = 67/191 (35%), Gaps = 15/191 (7%)

Query: 2   DSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYV----- 55
             S           K+ +IGD   GK+SLL     + F  + S T G++   K       
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88

Query: 56  ---DVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI 112
              D   K+     WD  GQE        +   +   +++ D     T +N    W + I
Sbjct: 89  LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHY-WLRHI 144

Query: 113 DLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
           + Y        ++V NK+D+     + +K+           F   S K    V+   + L
Sbjct: 145 EKYGGK--SPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202

Query: 173 VLKILDTPSLL 183
              +L   S+ 
Sbjct: 203 KSAVLHPDSIY 213

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  159 bits (405), Expect = 1e-49
 Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 15/206 (7%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K + +GD  VGK+ +L+ +TS+ F  +  PT+  +F    V V G+ + L +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
            +  L    YRGA   ++ + +  + ++ N+   W  E+  ++ N   +  LVG K+D  
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV--LVGTKLDLR 126

Query: 132 ------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTPSLLA 184
                  +   V+T  +G    ++ G   +IECS+KT+ NV+  F+  +  +L  P    
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR--R 184

Query: 185 EGSKGLKKNIFKQKPPEADAAASGCC 210
           +     +KN  +     A     GC 
Sbjct: 185 KEVPRRRKNHRRSGCSIASIVCGGCT 210

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  157 bits (400), Expect = 2e-49
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 15/175 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K + +GD  VGK+ LL+S+TS+ F  +  PT+  +F    V V G  + L +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQE 67

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
            +  L    YRGA   I+ + +  + ++ N+S  W  E+  Y+     +  LVG K+D  
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV--LVGTKLDLR 125

Query: 132 --------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
                         +T  +G    +  G   +IECS+K++ NV+  F+  +  +L
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  158 bits (400), Expect = 5e-49
 Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 17/180 (9%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K++++GD G GK+SLL+ F    F E  +PT+   + +  + V GK + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
            +  L   +Y  A  +++ +DVT  ++F N+ + W  E++ +        ++VG K D  
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK--VPIIVVGCKTDLR 151

Query: 132 ----------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
                     +     VT   G   AR  G + ++ECSA+   NV   F+E     L + 
Sbjct: 152 KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  152 bits (386), Expect = 5e-47
 Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 20/182 (10%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
               KL+++GD   GK+ LL+ F+ D F E   PT+  +  +  ++V GK+++LA+WDTA
Sbjct: 23  AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQE +  L    Y     I+M + +   D+  N+ + W  E+  +  N     +LVGNK 
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKK 139

Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEE---LVL 174
           D            K  +  V  +EG + A       ++ECSAKT+  V++ FE      L
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

Query: 175 KI 176
           ++
Sbjct: 200 QV 201

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  150 bits (380), Expect = 4e-46
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 17/189 (8%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           S   +        K +++GD  VGK+ LL+S+T++ F  E  PT+  D     V V GK 
Sbjct: 19  SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKP 77

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           + L +WDTAGQE +  L    Y      ++ + +    +F N+   W  E+  +  N   
Sbjct: 78  VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN--T 135

Query: 122 IKLLVGNKVD------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQC 168
             +LVG K+D            ++    +T  +G+  A+E G + ++ECSA T+  ++  
Sbjct: 136 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 195

Query: 169 FEELVLKIL 177
           F+E +  +L
Sbjct: 196 FDEAIRAVL 204

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  150 bits (380), Expect = 6e-46
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 17/179 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E   PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + V   D+  N+ + W  E+  +  N     +LV NK D   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN--VPIILVANKKDLRS 143

Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
                    +  +  V   +G   A       ++ECSAKT+  V++ FE      L   
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR 202

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  146 bits (371), Expect = 7e-45
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 15/178 (8%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           K +++GD  VGK+ LL+S+T++ F         D     V V GK + L +WDTAGQE +
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD---- 131
             L    Y      ++ + +    +F N+   W  E+  +  N     +LVG K+D    
Sbjct: 67  DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN--TPIILVGTKLDLRDD 124

Query: 132 --------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
                   ++    +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  146 bits (371), Expect = 1e-44
 Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 17/180 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K +++GD  VGK+SL++S+T++ +  E  PT   D     V V G+ ++L + DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           F  L    Y      ++ + V    +F N+S+ W  EI  +        +LVG + D   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK--APIILVGTQSDLRE 138

Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTPS 181
                    K  E+ V ++     A E     +IECSA T+ N+++ F+  ++  +    
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  145 bits (368), Expect = 3e-44
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 18/186 (9%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           +   S      +   K++++GDS  GK++LL  F  D F E   PT+  ++     ++  
Sbjct: 15  VPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDT 73

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           ++++L++WDT+G   +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N 
Sbjct: 74  QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN- 132

Query: 120 DCIKLLVGNKVD------------KESERVVTKKEGINFAREYGCL-FIECSAK-TRVNV 165
               LLVG K D               +  V+  +G N A++ G   +IECSA  +  +V
Sbjct: 133 -TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSV 191

Query: 166 QQCFEE 171
           +  F  
Sbjct: 192 RDIFHV 197

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  144 bits (365), Expect = 7e-44
 Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 17/189 (8%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
            SS +      + K +++GD  VGK+ LL+S+ +D F EE  PT+  D     V VGGK+
Sbjct: 7   RSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQ 65

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y+ N   
Sbjct: 66  YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN--V 123

Query: 122 IKLLVGNKVD------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQC 168
             LL+G ++D               E+ +  ++G   A+E G   ++ECSA T+  ++  
Sbjct: 124 PFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 183

Query: 169 FEELVLKIL 177
           F+E ++ IL
Sbjct: 184 FDEAIIAIL 192

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  142 bits (359), Expect = 8e-43
 Identities = 41/194 (21%), Positives = 88/194 (45%), Gaps = 18/194 (9%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
               + Q      KL+++GD   GK+++L     D + E   PT+  ++    ++   ++
Sbjct: 16  FQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQR 74

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           ++L++WDT+G   +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +   
Sbjct: 75  VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS--T 132

Query: 122 IKLLVGNKVD------------KESERVVTKKEGINFAREYGCL-FIECSAKTR-VNVQQ 167
             LL+G K D             + +  ++ ++G   A++ G   ++E SA T   ++  
Sbjct: 133 RVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHS 192

Query: 168 CFEELVLKILDTPS 181
            F    +  L+ PS
Sbjct: 193 IFRTASMLCLNKPS 206

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  138 bits (350), Expect = 9e-42
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 18/171 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GDS  GK++LL  F  D F E   PT+  ++     ++  ++++L++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 67

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN--TKMLLVGCKSDLRT 125

Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAK-TRVNVQQCFEE 171
                       +  V+  +G N A++ G   +IECSA  +  +V+  F  
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  117 bits (293), Expect = 8e-32
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 15/193 (7%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
             ++    +    L K +++GD  VGK+ LL+S+T++ F         D     V V GK
Sbjct: 142 KKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK 201

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
            + L +WDTAG E +  L    Y      ++ + +    +F ++   W  E+  +  N  
Sbjct: 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP 261

Query: 121 CIKLLVGNKVD------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQ 167
            I  LVG K+D            ++    +T  +G+  A+E G + ++ECSA T+  ++ 
Sbjct: 262 II--LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 319

Query: 168 CFEELVLKILDTP 180
            F+E +  +L  P
Sbjct: 320 VFDEAIRAVLCPP 332

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  108 bits (272), Expect = 2e-29
 Identities = 39/221 (17%), Positives = 66/221 (29%), Gaps = 67/221 (30%)

Query: 21  GDSGVGKSSLLLSF---TSDNF-EELSPTIG-VDFKVKYVD--------------VGGKK 61
           G  G+GKS L   F   ++D F  + +  +   DF  + V+                  +
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 62  LKLAIW-------DTAGQERFRTLTSSYYRGA---------------------------- 86
            K+ I        D   Q    T    Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 87  ---------QGIIMVYDVTRRD--TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135
                     G ++  DV+R     F +    +   +           ++V  K D+  E
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVE 213

Query: 136 RVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           R +        +++     +E SA++ VNV   F  LV  I
Sbjct: 214 RYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLI 253

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 92.1 bits (229), Expect = 2e-23
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 22/182 (12%)

Query: 15  FKLLMIGDSGVGKSSLL----LSFTSDNFEEL-------SPTIGVDF-KVKYVDVGGKKL 62
           FK++  G    GK++ L             E+         T+  DF  +   +V G K 
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS--DVWAKEIDLYSTNQD 120
           +  ++   GQ  +        RG  GI+ V D        N        + +  Y    D
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 121 CIKLLVG-NKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            + +++  NK D        +V          E     +E  A     V +  +E+   +
Sbjct: 135 DVPIVIQVNKRDLPDALPVEMVRAV----VDPEGKFPVLEAVATEGKGVFETLKEVSRLV 190

Query: 177 LD 178
           L 
Sbjct: 191 LA 192

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 83.5 bits (207), Expect = 2e-20
 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 20/178 (11%)

Query: 11  FDYLF------KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKL 64
           FD L+      ++L++G  G GK+++L            PTIG  F V+ +    K LKL
Sbjct: 9   FDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG--FNVETLSY--KNLKL 64

Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDC 121
            +WD  GQ   R     YY     +I V D T +D  +  S        E +L    QD 
Sbjct: 65  NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL----QDA 120

Query: 122 IKLLVGNKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             L+  NK D+    S   V+K+  +   ++     +  SA     + +  + L+  I
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 82.7 bits (205), Expect = 4e-20
 Identities = 39/191 (20%), Positives = 77/191 (40%), Gaps = 28/191 (14%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            K++++G    GK+++L  F+ +     SPTIG    V+ + +     +  +WD  GQE 
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--SNVEEIVI--NNTRFLMWDIGGQES 72

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCIKLLVGNKVD 131
            R+  ++YY   + +I+V D T R+  +   +   K     DL    +    L+  NK D
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL----RKAGLLIFANKQD 128

Query: 132 KE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSK 188
            +   +   +++   +   +++      C A T   + Q  E ++               
Sbjct: 129 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM--------------S 174

Query: 189 GLKKNIFKQKP 199
            LK  +     
Sbjct: 175 RLKIRLEHHHH 185

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 81.5 bits (202), Expect = 8e-20
 Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 20/168 (11%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++L++G  G GK+++L            PTIG  F V+ V    K LK  +WD  G   
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTS 63

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA------KEIDLYSTNQDCIKLLVGN 128
            R     YY     +I V D   RD    +    +      +E +L    +  I ++  N
Sbjct: 64  IRPYWRCYYSNTDAVIYVVDSCDRD---RIGISKSELVAMLEEEEL----RKAILVVFAN 116

Query: 129 KVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           K D E   +   +    G+   ++      + SA     + +  E LV
Sbjct: 117 KQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 19/177 (10%)

Query: 11  FDYLF-----KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLA 65
           F  +F     ++LM+G    GK+++L            PTIG  F V+ V+   K +   
Sbjct: 21  FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFT 76

Query: 66  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCI 122
           +WD  GQ++ R L   Y++  QG+I V D   R+     +D   K   E +L    +D +
Sbjct: 77  VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDEL----RDAV 132

Query: 123 KLLVGNKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            L+  NK D         +T K G+   R          A     +    + L  ++
Sbjct: 133 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 80.3 bits (199), Expect = 2e-19
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 14/167 (8%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 57

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCIKLLVGNKVDK 132
           R L   Y++  QG+I V D   R+      +   +   E +L    +D + L+  NK D 
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL----RDAVLLVFANKQDL 113

Query: 133 E---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               +   +T K G++  R          A +   + +  + L  ++
Sbjct: 114 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 80.8 bits (200), Expect = 2e-19
 Identities = 41/189 (21%), Positives = 80/189 (42%), Gaps = 21/189 (11%)

Query: 1   MDSSSASQQEFDYLF-------KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVK 53
           M SS         L        K++++G    GK+++L  F+ +     SPTIG    V+
Sbjct: 1   MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--SNVE 58

Query: 54  YVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK--- 110
            + +     +  +WD  GQE  R+  ++YY   + +I+V D T R+  +   +   K   
Sbjct: 59  EIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 116

Query: 111 EIDLYSTNQDCIKLLVGNKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167
             DL    +    L+  NK D +   +   +++   +   +++      C A T   + Q
Sbjct: 117 HEDL----RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 172

Query: 168 CFEELVLKI 176
             E ++ ++
Sbjct: 173 GLEWMMSRL 181

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 80.4 bits (199), Expect = 3e-19
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 14/168 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            +LLM+G    GK+++L  F  ++ + +SPT+G  F +K ++   +  KL IWD  GQ+ 
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG--FNIKTLEH--RGFKLNIWDVGGQKS 74

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCIKLLVGNKVD 131
            R+   +Y+    G+I V D   R    +          E  L         L+  NK D
Sbjct: 75  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL----AGATLLIFANKQD 130

Query: 132 KE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                S   + +   ++  R +      CSA T  ++    + L+  I
Sbjct: 131 LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 79.2 bits (196), Expect = 9e-19
 Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 20/168 (11%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+S+L      +     PT+G    ++ +    K +   +WD  GQ  
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG--VNLETLQY--KNISFEVWDLGGQTG 78

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA------KEIDLYSTNQDCIKLLVGN 128
            R     Y+     +I V D T RD    +            E +L    +  + L+  N
Sbjct: 79  VRPYWRCYFSDTDAVIYVVDSTDRD---RMGVAKHELYALLDEDEL----RKSLLLIFAN 131

Query: 129 KVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           K D     SE  + ++ G++         ++ S+KT   + +  + LV
Sbjct: 132 KQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 77.7 bits (192), Expect = 3e-18
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 23/192 (11%)

Query: 1   MDSSSASQQEFDYLFK-------LLMIGDSGVGKSSLL--LSFTSDNFEELSPTIGVDFK 51
           M SS         L         +L +G    GK++++  L  ++   + + PTIG  F 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FS 58

Query: 52  VKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF----TNLSDV 107
           ++        L   ++D +GQ R+R L   YY+  Q II V D + R         L  +
Sbjct: 59  IEKFKS--SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTL 116

Query: 108 WAKEIDLYSTNQDCIKLLVGNKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVN 164
                D+   ++    L   NK+D     +   V++   +   ++         A     
Sbjct: 117 LNHP-DI--KHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEG 173

Query: 165 VQQCFEELVLKI 176
           +Q+  + L  +I
Sbjct: 174 LQEGVDWLQDQI 185

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 77.2 bits (191), Expect = 4e-18
 Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 14/168 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++L++G    GK++LL    S++   ++PT G  F +K V    +  KL +WD  GQ +
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQS--QGFKLNVWDIGGQRK 72

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN---QDCIKLLVGNKVD 131
            R    SY+     +I V D   R  F    +   +E+              L+  NK D
Sbjct: 73  IRPYWRSYFENTDILIYVIDSADRKRF----EETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 132 KE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                    + +   ++  R+       CSA T   VQ     +   +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 19/178 (10%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
               S++E     +L ++G    GK++ +    S  F E++ PT+G  F ++ +  G   
Sbjct: 15  VPRGSKEEM----ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVT 68

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL---YSTN 118
           +K  +WD  GQ RFR++   Y RG   I+ + D   ++      +    E+         
Sbjct: 69  IK--LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI----EASKNELHNLLDKPQL 122

Query: 119 QDCIKLLVGNKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           Q    L++GNK D      E+ + +K  ++  ++        S K + N+    + L+
Sbjct: 123 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 25/173 (14%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           KLL +G    GK++LL    +D    L PT       + + +    +K   +D  G  + 
Sbjct: 25  KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWH--PTSEELAI--GNIKFTTFDLGGHIQA 80

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS-----TNQDCIKLLVGNKV 130
           R L   Y+    GI+ + D    + F       A+  +L +       +D   +++GNK+
Sbjct: 81  RRLWKDYFPEVNGIVFLVDAADPERFDE-----ARV-ELDALFNIAELKDVPFVILGNKI 134

Query: 131 DKE---SERVVTKKEGINFAREYGCLFIE-------CSAKTRVNVQQCFEELV 173
           D     SE  +    G+        +  +       CS   R    + F+ L 
Sbjct: 135 DAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 72.7 bits (179), Expect = 3e-16
 Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 26/176 (14%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           KL+ +G    GK++LL     D   +  PT+      + + + G  +    +D  G  + 
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH--PTSEELTIAG--MTFTTFDLGGHIQA 82

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL---YSTNQDCIKLLVGNKVDK 132
           R +  +Y     GI+ + D    +          +E+D      T  +   L++GNK+D+
Sbjct: 83  RRVWKNYLPAINGIVFLVDCADHERL----LESKEELDSLMTDETIANVPILILGNKIDR 138

Query: 133 E---SERVVTKKEGINFAREYGCLF------------IECSAKTRVNVQQCFEELV 173
               SE  + +  G+                        CS   R    + F  + 
Sbjct: 139 PEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 73.1 bits (179), Expect = 1e-15
 Identities = 36/197 (18%), Positives = 80/197 (40%), Gaps = 22/197 (11%)

Query: 16  KLLMIGDSGVGKSS----LLLSFTSDNFEELSPTIGVDFK-VKYVDVGGKKLKLAIWDTA 70
           KLL++G SG GKSS    +  ++++ +   L  TI V+   +++       + L +WD  
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF----LGNMTLNLWDCG 60

Query: 71  GQERF-----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL 125
           GQ+ F            ++  Q +I V+DV   +   ++         L   + D    +
Sbjct: 61  GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120

Query: 126 VGNKVD--KESERVVTKKEGINFARE------YGCLFIECSAKTRVNVQQCFEELVLKIL 177
           + +K+D  +  +R    +  +    E      +  L    ++    ++ + + ++V  ++
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLI 180

Query: 178 DTPSLLAEGSKGLKKNI 194
              S      K  K+ +
Sbjct: 181 PNMSNHQSNLKKFKEIM 197

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 69.6 bits (170), Expect = 4e-15
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 17/130 (13%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE----LSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           ++L++G    GKSS+               L  T         +      +   IWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK--IYKDDISNSS-FVNFQIWDFPG 78

Query: 72  QERFRTLTS---SYYRGAQGIIMVYDVTRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
           Q  F   T      +RG   +I V D      +  T L      +    + +   +   V
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYKVNPD---MNFEV 134

Query: 127 -GNKVDKESE 135
             +KVD  S+
Sbjct: 135 FIHKVDGLSD 144

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 70.7 bits (173), Expect = 7e-15
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 20/178 (11%)

Query: 8   QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIW 67
                   ++LM+G    GK+++L            PTIG  F V+ V+   K +   +W
Sbjct: 159 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVW 214

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA------KEIDLYSTNQDC 121
           D  GQ++ R L   Y++  QG+I V D   R+    +++          E +L    +D 
Sbjct: 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RVNEAREELMRMLAEDEL----RDA 267

Query: 122 IKLLVGNKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + L+  NK D     +   +T K G++  R          A +   + +  + L  ++
Sbjct: 268 VLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKK-LKLAIWDTAGQER 74
            +L +G    GK+ L +   +  + +   +I          V   +   L + D  G E 
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHES 66

Query: 75  FR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN---QDCIKLLV-GNK 129
            R  L   +   A+ ++ V D         + DV      +   +   ++   LL+  NK
Sbjct: 67  LRFQLLDRFKSSARAVVFVVDSA--AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124

Query: 130 VD 131
            D
Sbjct: 125 QD 126

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 24/141 (17%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKL 62
           S      +      +++ G    GK+SLL   T+D+      +        Y        
Sbjct: 41  SGGGGSYQP----SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGS 91

Query: 63  KLAIWDTAGQERFRTLTSSYYR----GAQGIIMVYD-VTRRDTFTNLSDVWAKEI-DLYS 116
            + + D  G  + R   S Y +      +G+I + D          L+   A+ + D+ S
Sbjct: 92  GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK---KLTTT-AEFLVDILS 147

Query: 117 TNQDCIK-----LLVGNKVDK 132
             +   +     L+  NK + 
Sbjct: 148 ITESSCENGIDILIACNKSEL 168

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 57.4 bits (138), Expect = 4e-10
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 17  LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76
           +L++G    GKSS+      +     +  +               + LA+ +  GQ  + 
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYF 60

Query: 77  TLT---SSYYRGAQGIIMVYDVTR--RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
             +      ++    ++ V D      +  TNL+ +       Y  N      ++ +KVD
Sbjct: 61  EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEY---AYKVNPSINIEVLIHKVD 117

Query: 132 KESE 135
             SE
Sbjct: 118 GLSE 121

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 18/126 (14%)

Query: 17  LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76
           +++ G    GK+SLL   T+D+      +        Y         + + D  G  + R
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLR 69

Query: 77  TLTSSYY----RGAQGIIMVYD-VTRRDTFTNLSDVWAKEIDLYSTNQDCIK-----LLV 126
              S Y     +  +G+I + D          L+      +D+ S  +   +     L+ 
Sbjct: 70  YKLSDYLKTRAKFVKGLIFMVDSTVDPK---KLTTTAEFLVDILSITESSCENGIDILIA 126

Query: 127 GNKVDK 132
            NK + 
Sbjct: 127 CNKSEL 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 46/197 (23%)

Query: 21  GDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS 80
           G  G GK+ + L               +DFK+ ++++        + +   Q+    +  
Sbjct: 157 GVLGSGKTWVALDVCLSY----KVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQIDP 211

Query: 81  SYY---RGAQGIIMVYDVTR---RDTFTN---------LSDVWAKEIDLYSTNQDCIKLL 125
           ++      +  I +     +   R    +         L +V   +    + N  C K+L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSC-KIL 269

Query: 126 VGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAE 185
                      + T+ + +             SA T  ++      + L   +  SLL  
Sbjct: 270 -----------LTTRFKQVTDFL---------SAATTTHISLDHHSMTLTPDEVKSLLL- 308

Query: 186 GSKGLKKNIFKQKPPEA 202
             K L        P E 
Sbjct: 309 --KYLDCRPQDL-PREV 322

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 33/189 (17%), Positives = 54/189 (28%), Gaps = 52/189 (27%)

Query: 25  VGKSSLL--LSF------------TSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
            GKS+LL  L              T D  EE                     +L   DTA
Sbjct: 244 AGKSTLLNTLLGQERAIVSHMPGTTRDYIEE------------CFIHDKTMFRLT--DTA 289

Query: 71  GQ------------ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN 118
           G              R    +      A  I+ + D+          D   +  +L + +
Sbjct: 290 GLREAGEEIEHEGIRR----SRMKMAEADLILYLLDLGTERL----DDELTEIRELKAAH 341

Query: 119 QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
                L V NK+D+ +      +   +     G   I  SA     +    ++ +  ++ 
Sbjct: 342 PAAKFLTVANKLDRAANADALIRAIADGT---GTEVIGISALNGDGIDT-LKQHMGDLVK 397

Query: 179 TPSLLAEGS 187
               L E S
Sbjct: 398 NLDKLHEAS 406

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 10/78 (12%)

Query: 15 FKLLMIGDSGVGKSSLLLS-FTSDNF---------EELSPTIGVDFKVKYVDVGGKKLKL 64
          F L+++G+SG+GKS+L+ S F +D +         E++  T+ ++     ++  G KL+L
Sbjct: 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRL 78

Query: 65 AIWDTAGQERFRTLTSSY 82
           + DT G          +
Sbjct: 79 TVVDTPGYGDAINCRDCF 96

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 15  FKLLMIGDSGVGKSSLL-----LSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           F +L +G++G+GKS+L+       F  +      P + +      +     +LKL I  T
Sbjct: 43  FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVST 102

Query: 70  AG 71
            G
Sbjct: 103 VG 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.98
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.98
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.98
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.89
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.89
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.88
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.88
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.86
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.86
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.85
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.85
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.85
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.85
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.85
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.84
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.84
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.84
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.84
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.84
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.83
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.82
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.81
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.81
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.8
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.8
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.78
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.78
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.77
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.76
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.76
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.75
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.75
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.74
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.74
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.74
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.7
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.68
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.67
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.67
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.65
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.65
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.64
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.63
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.62
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.59
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.58
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.57
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.57
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.56
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.55
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.51
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.45
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.43
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.4
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.39
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.28
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.26
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.24
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.1
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.96
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.91
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.89
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.89
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.88
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.83
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.81
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.78
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.77
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.75
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.54
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.35
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.35
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.33
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.26
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.17
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.11
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.09
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.98
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.92
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.89
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.83
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.59
2xxa_A	433	Signal recognition particle protein; protein trans	97.5
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.48
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.47
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.45
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.44
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.43
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.37
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.36
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.36
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.34
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.34
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.31
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.3
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.3
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.27
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.25
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.24
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.22
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.2
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.19
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.18
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.18
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.16
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.16
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.14
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.14
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.14
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.13
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.13
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.12
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.12
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.11
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.1
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.1
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.09
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.08
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.08
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.08
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.08
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.08
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.06
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.05
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.05
1g6h_A	257	High-affinity branched-chain amino acid transport	97.04
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.04
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.04
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.03
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.03
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.02
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.02
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.02
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.01
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.01
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.0
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.99
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.99
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.99
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.99
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.99
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.98
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.97
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.97
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.97
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.97
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.97
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.96
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.96
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.95
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.95
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.95
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.95
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.94
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.94
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.93
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.93
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.93
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.93
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.92
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.92
3uc9_A	233	Increased recombination centers protein 6; rossman	96.92
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.92
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.92
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.91
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.91
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.91
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.89
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.89
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.88
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.88
1via_A	175	Shikimate kinase; structural genomics, transferase	96.87
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.86
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.86
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.86
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.85
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.85
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.84
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.82
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.82
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.82
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.81
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.8
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.79
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.79
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.79
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.79
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.78
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.78
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.78
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.77
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.77
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.77
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.76
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.74
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.73
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.72
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.72
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.71
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.71
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.71
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.7
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.7
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.7
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.7
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.7
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.7
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.69
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.68
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.67
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.67
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.67
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.66
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.65
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.65
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.65
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.65
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.65
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.64
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.63
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.63
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.63
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.63
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.62
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.62
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.62
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.62
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.61
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.61
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.61
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.6
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.6
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.6
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.58
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.58
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.57
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.52
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.52
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.52
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.5
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.5
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.49
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.48
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.48
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.48
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.48
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.48
3bos_A	242	Putative DNA replication factor; P-loop containing	96.45
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.44
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.43
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.42
2og2_A	359	Putative signal recognition particle receptor; nuc	96.4
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.38
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.35
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.34
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.34
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.33
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.33
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.32
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.32
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.3
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.3
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.3
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.29
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.28
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.27
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.26
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.24
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.22
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.22
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.22
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.21
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.2
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.18
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.18
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.17
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.17
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.08
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.08
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.07
3co5_A	143	Putative two-component system transcriptional RES	96.07
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.06
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.06
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.05
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.04
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.03
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.02
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.99
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.97
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.96
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.96
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.96
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.96
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.94
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.93
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.91
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.89
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.88
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.87
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.86
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.86
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.86
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.85
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.85
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.84
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.84
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.83
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.83
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.8
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.8
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.78
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.76
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.76
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.76
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.75
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.74
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.71
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.7
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.7
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.69
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.68
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.66
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.66
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.66
2qgz_A	308	Helicase loader, putative primosome component; str	95.65
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.64
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.64
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.63
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.57
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.56
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.56
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.55
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.55
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.54
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.53
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.53
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.52
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.52
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.52
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.51
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.51
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.48
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.48
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.46
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.41
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	95.4

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=7.6e-42  Score=251.93  Aligned_cols=199  Identities=35%  Similarity=0.586  Sum_probs=142.9

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .++.+.+||+|+|++|||||||+++|..+.|...+. |.+.++....+..++..+.+.||||+|++.+..++..+++.++
T Consensus         8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~   87 (216)
T 4dkx_A            8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA   87 (216)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred             CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence            445677999999999999999999999999877654 8888888888899999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ++++|||++++.+|+.+.. |+..+.... ..++|++|||||+|+.+.+.+..++++.++..++++|++|||++|.||++
T Consensus        88 ~~ilv~di~~~~Sf~~i~~-~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e  165 (216)
T 4dkx_A           88 AAVVVYDITNVNSFQQTTK-WIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQ  165 (216)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred             EEEEEeecchhHHHHHHHH-HHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHH
Confidence            9999999999999999998 766666543 46799999999999988888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCcccccccCcccccccCCCCccCcccCCCC
Q 028381          168 CFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      +|..|++.+.+........... .......+++++++.+++||
T Consensus       166 ~F~~i~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~C~  207 (216)
T 4dkx_A          166 LFRRVAAALPGMESTQDRSRED-MIDIKLEKPQEQPVSEGGCS  207 (216)
T ss_dssp             HHHHHHHHC----------------------------------
T ss_pred             HHHHHHHHHHhhhccccccccc-ccccccCCCCCCCCCCCCCc
Confidence            9999999987655443322221 12223344455556667774

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=7.4e-37  Score=223.93  Aligned_cols=178  Identities=34%  Similarity=0.526  Sum_probs=147.7

Q ss_pred             CCCCcccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q 028381            1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT   79 (210)
Q Consensus         1 ~~~~~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   79 (210)
                      |.+......+....+||+|+|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+
T Consensus         1 m~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   79 (206)
T 2bov_A            1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIR   79 (206)
T ss_dssp             ----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred             CCcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHH
Confidence            44555555666778999999999999999999999988766555 554443 4567788888999999999999999999


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc
Q 028381           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      ..+++.+|++++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||
T Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (206)
T 2bov_A           80 DNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA  158 (206)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECT
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeC
Confidence            999999999999999999999999887 7777776655568999999999999877778888899999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCC
Q 028381          160 KTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ++|.|++++|++|++.+.+..
T Consensus       159 ~~g~gi~~l~~~l~~~i~~~~  179 (206)
T 2bov_A          159 KTRANVDKVFFDLMREIRARK  179 (206)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHcc
Confidence            999999999999999997653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=6.2e-36  Score=219.29  Aligned_cols=171  Identities=51%  Similarity=0.846  Sum_probs=151.9

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .++.+||+|+|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            467899999999999999999999998886554 4778788777888899999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|||++++.++..+.. |+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        85 ilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  162 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKM-WLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF  162 (206)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999888 877776543 4578999999999998777788888899999999999999999999999999


Q ss_pred             HHHHHHHHcCCCcc
Q 028381          170 EELVLKILDTPSLL  183 (210)
Q Consensus       170 ~~l~~~~~~~~~~~  183 (210)
                      .++.+.+.+.....
T Consensus       163 ~~l~~~i~~~~~~~  176 (206)
T 2bcg_Y          163 LTMARQIKESMSQQ  176 (206)
T ss_dssp             HHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999998765543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=220.00  Aligned_cols=174  Identities=43%  Similarity=0.735  Sum_probs=144.1

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ...+..+||+|+|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus         8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   87 (223)
T 3cpj_B            8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV   87 (223)
T ss_dssp             --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred             CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence            44578899999999999999999999999887554 47777777777888998899999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ++|+|||++++.++..+.. |+..+.... ..++|++||+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        88 ~vilV~D~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  165 (223)
T 3cpj_B           88 GALIVYDISKSSSYENCNH-WLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDK  165 (223)
T ss_dssp             EEEEEEC-CCHHHHHHHHH-HHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred             EEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999887 877776643 45789999999999977667778888999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCccc
Q 028381          168 CFEELVLKILDTPSLLA  184 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~~~  184 (210)
                      +|++|.+.+.+......
T Consensus       166 l~~~l~~~i~~~~~~~~  182 (223)
T 3cpj_B          166 AFEELINTIYQKVSKHQ  182 (223)
T ss_dssp             HHHHHHHHHTTCC----
T ss_pred             HHHHHHHHHHHHhhhcc
Confidence            99999999987665543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=5.5e-34  Score=207.07  Aligned_cols=175  Identities=53%  Similarity=0.880  Sum_probs=153.3

Q ss_pred             ccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 028381            6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR   84 (210)
Q Consensus         6 ~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   84 (210)
                      ......+..+||+|+|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus         8 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   87 (196)
T 3tkl_A            8 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR   87 (196)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHT
T ss_pred             hcCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHh
Confidence            33455578899999999999999999999998876554 47777888888888999999999999999999999999999


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCC
Q 028381           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN  164 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (210)
                      .+|++++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|
T Consensus        88 ~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  165 (196)
T 3tkl_A           88 GAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN  165 (196)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTT
T ss_pred             hCCEEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence            9999999999999999999988 877776643 45789999999999988888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCc
Q 028381          165 VQQCFEELVLKILDTPSL  182 (210)
Q Consensus       165 i~~~~~~l~~~~~~~~~~  182 (210)
                      ++++|.+|.+.+.+....
T Consensus       166 v~~l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          166 VEQSFMTMAAEIKKRMGP  183 (196)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            999999999999876543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=205.32  Aligned_cols=167  Identities=29%  Similarity=0.429  Sum_probs=136.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--cccchhhcccCccEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--FRTLTSSYYRGAQGI   89 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d~~   89 (210)
                      .+.+||+++|++|||||||+++|.+..+...+++.+.++....+.+++..+.+.+||+||++.  +......+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            357999999999999999999999998877777788887777888899999999999999887  556677788999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|||++++.++..+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            99999999999999887 77766654344579999999999998777788888888999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028381          170 EELVLKILDT  179 (210)
Q Consensus       170 ~~l~~~~~~~  179 (210)
                      ++|.+.+.+.
T Consensus       161 ~~l~~~~~~~  170 (175)
T 2nzj_A          161 EGVVRQLRLR  170 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=1.1e-34  Score=212.58  Aligned_cols=169  Identities=36%  Similarity=0.635  Sum_probs=143.6

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....+||+|+|++|+|||||+++|.+..+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            4578999999999999999999999988765544 777778778888888889999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCeEEEEccCCCCCH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAR-EYGCLFIECSAKTRVNV  165 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i  165 (210)
                      |+|+|++++.++..+.. |+..+.....   ..++|+++|+||+|+. ...+..+++..++. ..+++++++||++|.|+
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            99999999999999877 7766655432   1468999999999997 44556677788877 56789999999999999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 028381          166 QQCFEELVLKILDTPS  181 (210)
Q Consensus       166 ~~~~~~l~~~~~~~~~  181 (210)
                      +++|++|.+.+.+...
T Consensus       163 ~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          163 EQAFQTIARNALKQET  178 (207)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999987554

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=3.1e-34  Score=207.11  Aligned_cols=169  Identities=33%  Similarity=0.513  Sum_probs=144.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||+++|.++.+...+.....+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            35799999999999999999999998887666533345555667789999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      |||++++.++..+.. |...+.......+.|+++|+||+|+. ......+.+..++...+++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999888 77777766666789999999999996 4456677888999999999999999999999999999


Q ss_pred             HHHHHHcCCCc
Q 028381          172 LVLKILDTPSL  182 (210)
Q Consensus       172 l~~~~~~~~~~  182 (210)
                      +.+.+.+....
T Consensus       160 l~~~~~~~~~~  170 (189)
T 4dsu_A          160 LVREIRKHKEK  170 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhhhh
Confidence            99999766543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=6.1e-34  Score=204.43  Aligned_cols=170  Identities=29%  Similarity=0.423  Sum_probs=146.9

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....+||+++|++|+|||||+++|.++.+...+. +.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            3568999999999999999999999888766554 666665 66678899999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|||++++.+++.+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  160 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF  160 (181)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence            99999999999999988 77777665556689999999999998888889999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCc
Q 028381          170 EELVLKILDTPSL  182 (210)
Q Consensus       170 ~~l~~~~~~~~~~  182 (210)
                      .++++.+.+....
T Consensus       161 ~~l~~~~~~~~~~  173 (181)
T 3t5g_A          161 RRIILEAEKMDGA  173 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999876643

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=8.5e-34  Score=204.03  Aligned_cols=169  Identities=33%  Similarity=0.502  Sum_probs=149.0

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ......+||+++|++|||||||+++|.++.+...+. +.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            345678999999999999999999999888766555 555555 666788999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC-CCCCHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK-TRVNVQ  166 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~  166 (210)
                      ++++|||++++.++..+.. |...+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||+ ++.|++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~  170 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD  170 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence            9999999999999999988 77777665556789999999999998888888999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHcC
Q 028381          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|+++.+.+.++
T Consensus       171 ~l~~~l~~~i~~q  183 (183)
T 3kkq_A          171 KTFHDLVRVIRQQ  183 (183)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999988653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=209.81  Aligned_cols=173  Identities=40%  Similarity=0.767  Sum_probs=143.7

Q ss_pred             ccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 028381            6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR   84 (210)
Q Consensus         6 ~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   84 (210)
                      .++.+.++.+||+|+|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus        21 ~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~  100 (201)
T 2hup_A           21 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR  100 (201)
T ss_dssp             -----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT
T ss_pred             CcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh
Confidence            34556678899999999999999999999998876544 37777777777888888899999999999999999999999


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCC
Q 028381           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRV  163 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  163 (210)
                      .+|++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...++ +++++||+++.
T Consensus       101 ~~d~iilv~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  178 (201)
T 2hup_A          101 SANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS  178 (201)
T ss_dssp             TCSEEEEEEETTBHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred             hCCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence            9999999999999999999887 877776643 46799999999999977667788889999999999 89999999999


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 028381          164 NVQQCFEELVLKILDTP  180 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~  180 (210)
                      |++++|.+|.+.+.+..
T Consensus       179 gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          179 NVEEAFLRVATELIMRH  195 (201)
T ss_dssp             SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999987643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-33  Score=201.49  Aligned_cols=170  Identities=44%  Similarity=0.824  Sum_probs=140.9

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      ...+..+||+++|++|+|||||+++|.++.+..  ..++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            345778999999999999999999999988753  334777777777778899999999999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |++++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus        85 d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQA-WLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVD  162 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            99999999999999999887 777776643 3678999999999998777788888899999999999999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028381          167 QCFEELVLKILDTP  180 (210)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (210)
                      ++|+++.+.+.+..
T Consensus       163 ~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          163 LAFTAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999997654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=1.7e-33  Score=204.49  Aligned_cols=174  Identities=29%  Similarity=0.547  Sum_probs=147.0

Q ss_pred             cccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028381            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY   83 (210)
Q Consensus         5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   83 (210)
                      ..........+||+++|++|+|||||+++|.++.+...+. +.+.++. ..+.+++..+.+.+||+||++.+...+..++
T Consensus        14 ~~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   92 (194)
T 3reg_A           14 AGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSY   92 (194)
T ss_dssp             -------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGC
T ss_pred             cccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhc
Confidence            3444556788999999999999999999999998865554 6665554 4577889999999999999999999999999


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC--ceecHHHHHHHHHHhCCe-EEEEccC
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE--RVVTKKEGINFAREYGCL-FIECSAK  160 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~  160 (210)
                      +.+|++++|||++++.++..+...|...+...  ..++|+++|+||+|+...  +.+..+++..++...+++ ++++||+
T Consensus        93 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  170 (194)
T 3reg_A           93 ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV  170 (194)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred             cCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence            99999999999999999999855588888764  457899999999999653  667888899999999998 9999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCC
Q 028381          161 TRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      ++.|++++|+++.+.+.++..
T Consensus       171 ~~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          171 AKIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             TTBSHHHHHHHHHHHHHCSCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999987654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-33  Score=204.51  Aligned_cols=174  Identities=61%  Similarity=0.961  Sum_probs=151.8

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +....+||+|+|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            4456799999999999999999999998876544 477888888888889999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      +++|+|++++.++..+.. |+..+..+....++|+++|+||+|+. .+.+..+++..++...+++++++||+++.|++++
T Consensus        91 ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCA  168 (195)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            999999999999999887 88777765545679999999999994 4456677888999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcccc
Q 028381          169 FEELVLKILDTPSLLAE  185 (210)
Q Consensus       169 ~~~l~~~~~~~~~~~~~  185 (210)
                      |++|.+.+.+.+.....
T Consensus       169 ~~~l~~~~~~~~~~~~~  185 (195)
T 1x3s_A          169 FEELVEKIIQTPGLWES  185 (195)
T ss_dssp             HHHHHHHHHTSGGGTCC
T ss_pred             HHHHHHHHHhhhhhhcc
Confidence            99999999877655443

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.1e-34  Score=207.11  Aligned_cols=170  Identities=42%  Similarity=0.800  Sum_probs=149.4

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      +.+.++.+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus        20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (201)
T 2ew1_A           20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   99 (201)
T ss_dssp             --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence            345578899999999999999999999998886544 4777788778888899999999999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++
T Consensus       100 d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  177 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLPE-WLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVE  177 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999887 877776643 4578999999999997766777888889999999999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028381          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|.++.+.+.+.
T Consensus       178 ~l~~~l~~~i~~~  190 (201)
T 2ew1_A          178 KLFLDLACRLISE  190 (201)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=9.8e-34  Score=202.67  Aligned_cols=168  Identities=51%  Similarity=0.855  Sum_probs=148.0

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .+.++.+||+++|++|||||||+++|.++.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            345678999999999999999999999998766554 7777887888888999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ++++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..++++.++...+++++++||+++.|+++
T Consensus        90 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  167 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSS-WLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED  167 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEEEEeCcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999887 777776543 45789999999999977677788889999999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 028381          168 CFEELVLKILD  178 (210)
Q Consensus       168 ~~~~l~~~~~~  178 (210)
                      +|+++.+.+.+
T Consensus       168 l~~~l~~~i~~  178 (179)
T 1z0f_A          168 AFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHhh
Confidence            99999998854

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=4.1e-34  Score=202.42  Aligned_cols=164  Identities=30%  Similarity=0.405  Sum_probs=122.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .+||+++|++|||||||+++|.+..+....++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            5899999999999999999999887766666666655 455678999999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |++++.++..+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|+++.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           81 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             ETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            9999999999988 666666544456899999999999988888888999999999999999999999999999999999


Q ss_pred             HHHHcC
Q 028381          174 LKILDT  179 (210)
Q Consensus       174 ~~~~~~  179 (210)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=2.3e-33  Score=202.98  Aligned_cols=171  Identities=47%  Similarity=0.827  Sum_probs=150.1

Q ss_pred             cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028381            7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG   85 (210)
Q Consensus         7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (210)
                      .+...++.+||+|+|++|+|||||+++|+++.+...+ ++.+.++....+..++..+.+.+||+||++.+...+..+++.
T Consensus        15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   94 (189)
T 2gf9_A           15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG   94 (189)
T ss_dssp             CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred             CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence            3445567899999999999999999999999876544 477777777778888899999999999999999999999999


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCH
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (210)
                      +|++++|||++++.++..+.. |+..+.... ..+.|+++|+||+|+...+.+..++++.++...+++++++||+++.|+
T Consensus        95 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  172 (189)
T 2gf9_A           95 AMGFLLMYDIANQESFAAVQD-WATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINV  172 (189)
T ss_dssp             CSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence            999999999999999999887 777776642 457899999999999776777788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028381          166 QQCFEELVLKILDT  179 (210)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (210)
                      +++|++|.+.+.++
T Consensus       173 ~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          173 KQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.2e-34  Score=208.80  Aligned_cols=169  Identities=30%  Similarity=0.434  Sum_probs=139.5

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +....++|+++|++|||||||+++|.++.+...+. +.+.++ ...+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   82 (199)
T 2gf0_A            4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA   82 (199)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred             cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence            34567999999999999999999999988765444 554443 3446678888999999999999999899999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      +++|||++++.++..+.. |...+..... ..++|+++|+||+|+.. +.+..+++..++...+++++++||+++.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (199)
T 2gf0_A           83 FILVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKE  160 (199)
T ss_dssp             EEEEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Confidence            999999999999998887 5555544322 24689999999999964 45667778888889999999999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 028381          168 CFEELVLKILDTPS  181 (210)
Q Consensus       168 ~~~~l~~~~~~~~~  181 (210)
                      +|+++.+.+.++..
T Consensus       161 l~~~l~~~~~~~~~  174 (199)
T 2gf0_A          161 LFQELLTLETRRNM  174 (199)
T ss_dssp             HHHHHHHHCSSSCE
T ss_pred             HHHHHHHHHhhhhc
Confidence            99999998865543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.5e-33  Score=204.21  Aligned_cols=171  Identities=49%  Similarity=0.836  Sum_probs=148.6

Q ss_pred             cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028381            7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG   85 (210)
Q Consensus         7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (210)
                      ........+||+|+|++|||||||+++|.++.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus        14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   93 (191)
T 2a5j_A           14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG   93 (191)
T ss_dssp             CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence            34555788999999999999999999999988866544 77777777778889999999999999999999999999999


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCH
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (210)
                      +|++++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+
T Consensus        94 ~d~ii~v~d~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi  171 (191)
T 2a5j_A           94 AAGALLVYDITRRETFNHLTS-WLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV  171 (191)
T ss_dssp             CSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999888 777776543 457899999999999776777888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028381          166 QQCFEELVLKILDT  179 (210)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (210)
                      +++|++|.+.+.++
T Consensus       172 ~~l~~~l~~~i~~~  185 (191)
T 2a5j_A          172 EEAFINTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.7e-33  Score=201.97  Aligned_cols=171  Identities=39%  Similarity=0.650  Sum_probs=147.1

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      .......+||+++|++|+|||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus         6 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   85 (181)
T 2efe_B            6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA   85 (181)
T ss_dssp             ----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred             CCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence            445677899999999999999999999998886655 4777778778888888899999999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |++++|+|++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (181)
T 2efe_B           86 AAAIIVFDVTNQASFERAKK-WVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVK  163 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence            99999999999999998887 777776543 4578999999999998777788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028381          167 QCFEELVLKILDTP  180 (210)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (210)
                      ++|.+|.+.+.+.+
T Consensus       164 ~l~~~l~~~~~~~~  177 (181)
T 2efe_B          164 EIFYEIARRLPRVQ  177 (181)
T ss_dssp             HHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999998875543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=5.1e-34  Score=209.96  Aligned_cols=168  Identities=30%  Similarity=0.593  Sum_probs=140.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|+|||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            467999999999999999999999988765544 555444 445677888899999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--------ecHHHHHHHHHHhCC-eEEEEccCC
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--------VTKKEGINFAREYGC-LFIECSAKT  161 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~  161 (210)
                      +|||++++.++..+...|+..+..+.  .++|+++|+||+|+.....        +..+++..++...+. +++++||++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  163 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT  163 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence            99999999999998755888887653  4789999999999965543        367788889999896 899999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCc
Q 028381          162 RVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      +.|++++|+++++.+.+....
T Consensus       164 g~gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          164 QQNVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             CTTHHHHHHHHHHHHHCC---
T ss_pred             CCCHHHHHHHHHHHHhhhhhh
Confidence            999999999999999876543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.9e-33  Score=200.53  Aligned_cols=168  Identities=50%  Similarity=0.861  Sum_probs=147.9

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +.+..+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            4568899999999999999999999998876544 477777888888889999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      +++|+|++++.++..+.. |+..+...  ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKR-WLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM  161 (181)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999887 77777654  357899999999999877778888899999999999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028381          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |+++.+.+.+..
T Consensus       162 ~~~l~~~~~~~~  173 (181)
T 3tw8_B          162 FNCITELVLRAK  173 (181)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.5e-33  Score=199.94  Aligned_cols=165  Identities=40%  Similarity=0.681  Sum_probs=145.8

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....+||+++|++|+|||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            457899999999999999999999998876655 4778888778888899999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        83 i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (170)
T 1r2q_A           83 IVVYDITNEESFARAKN-WVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF  160 (170)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999998887 776666542 4579999999999997666777888899999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028381          170 EELVLKIL  177 (210)
Q Consensus       170 ~~l~~~~~  177 (210)
                      ++|.+.+.
T Consensus       161 ~~i~~~~~  168 (170)
T 1r2q_A          161 MAIAKKLP  168 (170)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHHHHh
Confidence            99998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.5e-33  Score=200.22  Aligned_cols=166  Identities=37%  Similarity=0.717  Sum_probs=139.6

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .++.+||+++|++|+|||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            467899999999999999999999988876544 4777777777788888899999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus        83 i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKN-WVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF  160 (170)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            99999999999999887 777766533 3468999999999997777778888999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 028381          170 EELVLKILD  178 (210)
Q Consensus       170 ~~l~~~~~~  178 (210)
                      +++.+.+.+
T Consensus       161 ~~l~~~~~~  169 (170)
T 1z08_A          161 LDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999998865

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.5e-33  Score=200.04  Aligned_cols=165  Identities=27%  Similarity=0.369  Sum_probs=132.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhcccCccEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-LTSSYYRGAQGIIM   91 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~   91 (210)
                      .+||+++|++|||||||+++|.+..+..... +.+.+.....+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            5899999999999999999999777654443 555666777778899999999999999988776 67777889999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      |||++++.++..+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  160 (169)
T 3q85_A           82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG  160 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence            999999999999988 6666665554558999999999999877888889999999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028381          172 LVLKILDT  179 (210)
Q Consensus       172 l~~~~~~~  179 (210)
                      +.+.+..+
T Consensus       161 l~~~i~~~  168 (169)
T 3q85_A          161 AVRQIRLR  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=9.1e-34  Score=203.88  Aligned_cols=167  Identities=48%  Similarity=0.899  Sum_probs=119.6

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .++.+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            467899999999999999999999988775443 3667677777778889899999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  162 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF  162 (183)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999887 877776542 4578999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028381          170 EELVLKILDT  179 (210)
Q Consensus       170 ~~l~~~~~~~  179 (210)
                      .++.+.+.+.
T Consensus       163 ~~l~~~i~~~  172 (183)
T 2fu5_C          163 FTLARDIKAK  172 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=205.06  Aligned_cols=171  Identities=27%  Similarity=0.367  Sum_probs=141.5

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhcccCcc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-LTSSYYRGAQ   87 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d   87 (210)
                      +....+||+++|++|||||||+++|.+..+. ...++.+.+.....+.+++..+.+.+||++|.+.+.. ++..+++.+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            3457799999999999999999999755432 2233445555566677899999999999999987665 6777889999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ++++|||++++.+|..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~  177 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE  177 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence            9999999999999999988 777776554445799999999999987777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 028381          168 CFEELVLKILDTPS  181 (210)
Q Consensus       168 ~~~~l~~~~~~~~~  181 (210)
                      +|.++++.+.+...
T Consensus       178 lf~~l~~~i~~~~~  191 (195)
T 3cbq_A          178 LFEGAVRQIRLRRG  191 (195)
T ss_dssp             HHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999876543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=4.2e-33  Score=200.82  Aligned_cols=169  Identities=47%  Similarity=0.811  Sum_probs=149.3

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +.++.+||+|+|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            3467899999999999999999999998886554 477777877888889988999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      +++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        86 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (186)
T 2bme_A           86 ALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA  163 (186)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            999999999999999887 777766543 467999999999999766777788889999999999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028381          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |+++.+.+.+..
T Consensus       164 ~~~l~~~~~~~~  175 (186)
T 2bme_A          164 FVQCARKILNKI  175 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=6.1e-33  Score=202.83  Aligned_cols=168  Identities=48%  Similarity=0.850  Sum_probs=149.2

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ..++.+||+|+|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            3467899999999999999999999999876544 477878877888889999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      +++|||++++.++..+.. |+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        84 ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQD-WSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT  161 (203)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence            999999999999998887 777776543 457899999999999877778888899999999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028381          169 FEELVLKILDT  179 (210)
Q Consensus       169 ~~~l~~~~~~~  179 (210)
                      |++|.+.+.+.
T Consensus       162 ~~~l~~~i~~~  172 (203)
T 1zbd_A          162 FERLVDVICEK  172 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.1e-33  Score=202.21  Aligned_cols=169  Identities=41%  Similarity=0.731  Sum_probs=149.1

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ++.++.+||+|+|++|||||||+++|.++.+...+. +.+.++....+.+++..+.+.+||+||.+.+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            445678999999999999999999999998876554 7788887788888899999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ++|+|||++++.++..+.. |+..+... ...++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus       100 ~vi~v~D~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVER-WLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL  177 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999998887 77777653 245789999999999977667778888999999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028381          168 CFEELVLKILDT  179 (210)
Q Consensus       168 ~~~~l~~~~~~~  179 (210)
                      +|.+|.+.+.+.
T Consensus       178 l~~~l~~~i~~~  189 (193)
T 2oil_A          178 AFETVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=206.84  Aligned_cols=171  Identities=29%  Similarity=0.433  Sum_probs=141.2

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +....+||+|+|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            44578999999999999999999999998876655 555555 5556667778999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      +++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        99 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI  177 (201)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            999999999999999987 7777766555668999999999999877888888999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCc
Q 028381          169 FEELVLKILDTPSL  182 (210)
Q Consensus       169 ~~~l~~~~~~~~~~  182 (210)
                      |.+|.+.+.+....
T Consensus       178 ~~~l~~~i~~~~~~  191 (201)
T 3oes_A          178 FTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHC---
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999999776543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=3.2e-33  Score=197.82  Aligned_cols=164  Identities=35%  Similarity=0.566  Sum_probs=140.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|+|||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            36899999999999999999999988766554 444443 4556788888999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      |||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            999999999999887 7777776655568999999999999777777888899999999999999999999999999999


Q ss_pred             HHHHHHc
Q 028381          172 LVLKILD  178 (210)
Q Consensus       172 l~~~~~~  178 (210)
                      +.+.+.+
T Consensus       161 l~~~i~~  167 (168)
T 1u8z_A          161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=3e-33  Score=201.71  Aligned_cols=167  Identities=17%  Similarity=0.308  Sum_probs=140.7

Q ss_pred             cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028381            7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      +.......+||+|+|++|||||||+++|+++.+...+.+.+.. +...+.+++..+.+.+||++|++.+.     +++.+
T Consensus        13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~   86 (184)
T 3ihw_A           13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGR-FKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV   86 (184)
T ss_dssp             ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEE-EEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred             CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcce-EEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence            3455677899999999999999999999999887655533333 34677889999999999999987766     67789


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHhC-CeEEEEccCCCC
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE--SERVVTKKEGINFAREYG-CLFIECSAKTRV  163 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  163 (210)
                      |++++|||++++.+++.+.. |+..+.......++|+++|+||+|+.  ..+.+..+++..++...+ ++++++||+++.
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  165 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL  165 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence            99999999999999999988 88888765444678999999999993  456678888999999987 899999999999


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 028381          164 NVQQCFEELVLKILDTP  180 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~  180 (210)
                      |++++|.++.+.+.+.+
T Consensus       166 gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          166 NVERVFQDVAQKVVALR  182 (184)
T ss_dssp             THHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999987654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.9e-33  Score=207.34  Aligned_cols=175  Identities=23%  Similarity=0.463  Sum_probs=141.9

Q ss_pred             ccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 028381            6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR   84 (210)
Q Consensus         6 ~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   84 (210)
                      .........+||+|+|++|||||||+++|.++.+...+. +.+.++ ...+.+++..+.+.+||++|++.+...+..+++
T Consensus        19 ~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   97 (214)
T 3q3j_B           19 RAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYS   97 (214)
T ss_dssp             --------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred             cCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcC
Confidence            344555678999999999999999999999998876654 666655 455677888899999999999999999999999


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC
Q 028381           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC  152 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~  152 (210)
                      .+|++|+|||++++.++..+...|+..+...  ..++|+++|+||+|+...            +.+..+++..++...++
T Consensus        98 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  175 (214)
T 3q3j_B           98 DSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA  175 (214)
T ss_dssp             TCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred             CCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence            9999999999999999999544488888775  357999999999999653            56888899999999999


Q ss_pred             -eEEEEccCCCCC-HHHHHHHHHHHHHcCCCcc
Q 028381          153 -LFIECSAKTRVN-VQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       153 -~~~~~Sa~~~~~-i~~~~~~l~~~~~~~~~~~  183 (210)
                       ++++|||+++.| ++++|+++++.+.+.....
T Consensus       176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~  208 (214)
T 3q3j_B          176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPL  208 (214)
T ss_dssp             SEEEECCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred             CEEEEeccCCCcccHHHHHHHHHHHHhccCcCC
Confidence             899999999998 9999999999998766543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2.7e-33  Score=198.39  Aligned_cols=164  Identities=33%  Similarity=0.587  Sum_probs=145.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ++.+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999998876554 47777777788888888999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|+|++++.++..+.. |+..+....  .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  159 (168)
T 1z2a_A           83 LVFSTTDRESFEAISS-WREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK  159 (168)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            9999999999999888 777776543  6789999999999977667778888999999999999999999999999999


Q ss_pred             HHHHHHHc
Q 028381          171 ELVLKILD  178 (210)
Q Consensus       171 ~l~~~~~~  178 (210)
                      ++.+.+.+
T Consensus       160 ~l~~~~~~  167 (168)
T 1z2a_A          160 YLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99998865

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=2.3e-33  Score=202.89  Aligned_cols=169  Identities=37%  Similarity=0.632  Sum_probs=144.0

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhcccCc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-TLTSSYYRGA   86 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~   86 (210)
                      ......+||+|+|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+. ..+..+++.+
T Consensus        15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (189)
T 1z06_A           15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV   94 (189)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence            34456799999999999999999999998886544 477777777888889989999999999999888 7888899999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC---C
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR---V  163 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~  163 (210)
                      |++++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++   .
T Consensus        95 d~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~  173 (189)
T 1z06_A           95 HAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND  173 (189)
T ss_dssp             CEEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence            99999999999999999888 8877777665678999999999999777777888889999999999999999999   9


Q ss_pred             CHHHHHHHHHHHHHc
Q 028381          164 NVQQCFEELVLKILD  178 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (210)
                      |++++|.+|.+.+.+
T Consensus       174 ~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          174 HVEAIFMTLAHKLKS  188 (189)
T ss_dssp             CHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999887743

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-33  Score=203.78  Aligned_cols=170  Identities=37%  Similarity=0.671  Sum_probs=147.0

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      .+...+.+||+|+|++|+|||||+++|+++.+.. ..++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus        17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (192)
T 2fg5_A           17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS   96 (192)
T ss_dssp             ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred             ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence            3455788999999999999999999999998754 445888888888888888899999999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |++++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..++++.++...+++++++||+++.|++
T Consensus        97 d~iilV~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  174 (192)
T 2fg5_A           97 AAAVIVYDITKQDSFYTLKK-WVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE  174 (192)
T ss_dssp             SEEEEEEETTCTHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHH
T ss_pred             CEEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence            99999999999999999877 877776643 4578999999999997666777888999999999999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028381          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|++|.+.+.+.
T Consensus       175 ~l~~~l~~~i~~~  187 (192)
T 2fg5_A          175 ELFQGISRQIPPL  187 (192)
T ss_dssp             HHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999877543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=3.7e-33  Score=199.99  Aligned_cols=169  Identities=33%  Similarity=0.507  Sum_probs=146.2

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +....+||+++|++|||||||+++|.++.+...+. +.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            44677999999999999999999999988766555 5555544 567788888999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      +++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        84 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  162 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  162 (181)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence            999999999999999887 6666644444667999999999999777777788889999999999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028381          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |++|.+.+.+..
T Consensus       163 ~~~l~~~~~~~~  174 (181)
T 2fn4_A          163 FEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999987654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=205.64  Aligned_cols=169  Identities=46%  Similarity=0.765  Sum_probs=140.5

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .+.++.+||+|+|++|||||||+++|+++.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            345678999999999999999999999888765443 7777777777888998999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ++|+|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus       100 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  177 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAA-WLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  177 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999887 777766533 36799999999999977677778888999999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028381          168 CFEELVLKILDT  179 (210)
Q Consensus       168 ~~~~l~~~~~~~  179 (210)
                      +|.++.+.+.++
T Consensus       178 l~~~l~~~i~~~  189 (200)
T 2o52_A          178 AFLKCARTILNK  189 (200)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=3.5e-33  Score=197.61  Aligned_cols=163  Identities=40%  Similarity=0.637  Sum_probs=141.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999999988766554 555444 4556778888999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCeEEEEccCCCCCHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      |||++++.++..+.. |...+.......++|+++|+||+|+.+.+.+..+++..++... +.+++++||++|.|++++|+
T Consensus        81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (167)
T 1c1y_A           81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence            999999999999888 7666666555668999999999999877777788888898887 78999999999999999999


Q ss_pred             HHHHHHH
Q 028381          171 ELVLKIL  177 (210)
Q Consensus       171 ~l~~~~~  177 (210)
                      ++.+.+.
T Consensus       160 ~l~~~i~  166 (167)
T 1c1y_A          160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998874

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=204.14  Aligned_cols=172  Identities=49%  Similarity=0.859  Sum_probs=143.0

Q ss_pred             ccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 028381            6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR   84 (210)
Q Consensus         6 ~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   84 (210)
                      ....+....+||+|+|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus        18 ~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   97 (192)
T 2il1_A           18 GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR   97 (192)
T ss_dssp             ----CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred             CCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence            34456678899999999999999999999998876544 47777888888888998999999999999999999999999


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCeEEEEccCCCC
Q 028381           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRV  163 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~  163 (210)
                      .+|++++|||++++.+++.+.. |+..+... ...++|+++|+||+|+...+.+..++++.++... +.+++++||+++.
T Consensus        98 ~~d~iilV~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  175 (192)
T 2il1_A           98 SAKGIILVYDITKKETFDDLPK-WMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF  175 (192)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred             CCCEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            9999999999999999999877 87777654 3457999999999999776777788888888874 7899999999999


Q ss_pred             CHHHHHHHHHHHHHcC
Q 028381          164 NVQQCFEELVLKILDT  179 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (210)
                      |++++|.+|.+.+.++
T Consensus       176 gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          176 NVDEIFLKLVDDILKK  191 (192)
T ss_dssp             SHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=8e-33  Score=196.33  Aligned_cols=165  Identities=37%  Similarity=0.666  Sum_probs=146.3

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ..+.+||+++|++|+|||||+++|.++.+... .++.+.++....+.+++..+.+.+||+||.+.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999987554 44888888888888899999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|+|++++.++..+.. |+..+... .....|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        83 i~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  160 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKN-WVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELF  160 (170)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999998877 77777663 35678999999999998777777888899999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028381          170 EELVLKIL  177 (210)
Q Consensus       170 ~~l~~~~~  177 (210)
                      .++.+.+.
T Consensus       161 ~~i~~~i~  168 (170)
T 1z0j_A          161 IEISRRIP  168 (170)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHh
Confidence            99998764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-34  Score=208.72  Aligned_cols=171  Identities=50%  Similarity=0.834  Sum_probs=151.5

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      +.+.++.+||+|+|++|||||||+++|+++.+...+. +.+.++....+..++..+.+.+||+||++.+...+..+++.+
T Consensus        17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (191)
T 3dz8_A           17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA   96 (191)
T ss_dssp             TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred             ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence            3455688999999999999999999999988765543 677777778888888889999999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |++++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus        97 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  174 (191)
T 3dz8_A           97 MGFILMYDITNEESFNAVQD-WATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVR  174 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence            99999999999999999988 888887643 4679999999999998777888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028381          167 QCFEELVLKILDTP  180 (210)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (210)
                      ++|+++.+.+.+..
T Consensus       175 ~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          175 QAFERLVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.7e-33  Score=204.98  Aligned_cols=169  Identities=26%  Similarity=0.376  Sum_probs=138.1

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhcccCc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN--FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRTLTSSYYRGA   86 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~   86 (210)
                      .....+||+++|++|||||||+++|.+..  +...+++.+.++....+.+++..+.+.+|||+|.+. ...+...+++.+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            44567999999999999999999999654  344445666666677788899999999999999876 445666778899


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |++++|||+++..+|+.+.. |...+.......++|+++|+||+|+...+.+..+++..++...++++++|||++|.||+
T Consensus       113 ~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~  191 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK  191 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999987 66666543334579999999999997666777788888888999999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028381          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|.++.+.+...
T Consensus       192 elf~~l~~~i~~~  204 (211)
T 2g3y_A          192 ELFEGIVRQVRLR  204 (211)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=8.8e-33  Score=200.19  Aligned_cols=170  Identities=35%  Similarity=0.697  Sum_probs=147.4

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeE-EEEEEECCe---------EEEEEEEeCCCcccccc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFK-VKYVDVGGK---------KLKLAIWDTAGQERFRT   77 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~g~~~~~~   77 (210)
                      .+.+..+||+|+|++|||||||+++|.++.+...+ ++.+.++. ...+..++.         .+.+.+||+||++.+..
T Consensus         6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   85 (195)
T 3bc1_A            6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS   85 (195)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred             cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence            34678899999999999999999999998876544 47776666 555666665         78999999999999999


Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEE
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC  157 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      .+..+++.+|++++|+|++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++
T Consensus        86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (195)
T 3bc1_A           86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET  164 (195)
T ss_dssp             HHHHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred             HHHHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999999999999887 87777765555789999999999997766777888899999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcC
Q 028381          158 SAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ||+++.|++++|++|.+.+.++
T Consensus       165 Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          165 SAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=5.5e-33  Score=197.08  Aligned_cols=163  Identities=45%  Similarity=0.723  Sum_probs=143.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            4689999999999999999999998876544 578888877888889999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC---ceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE---RVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      |+|++++.++..+.. |+..+.... ..+.|+++|+||+|+...   +.+..+++..++...+++++++||+++.|++++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (170)
T 1ek0_A           82 VYDVTKPQSFIKARH-WVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEecCChHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999888 777666543 467999999999999654   567778888999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028381          169 FEELVLKIL  177 (210)
Q Consensus       169 ~~~l~~~~~  177 (210)
                      |+++.+.+.
T Consensus       160 ~~~l~~~i~  168 (170)
T 1ek0_A          160 FLGIGEKIP  168 (170)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHHHHHh
Confidence            999987653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=5.4e-33  Score=200.15  Aligned_cols=170  Identities=35%  Similarity=0.542  Sum_probs=144.7

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      ..+....+||+|+|++|+|||||+++|.+..+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (187)
T 2a9k_A           12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG   90 (187)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence            3445567999999999999999999999988866555 444443 45567788889999999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |++++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  169 (187)
T 2a9k_A           91 EGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD  169 (187)
T ss_dssp             SEEEEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence            99999999999999999887 77777766655689999999999997766778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028381          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|++|.+.+.++
T Consensus       170 ~l~~~l~~~i~~~  182 (187)
T 2a9k_A          170 KVFFDLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=2.3e-32  Score=195.34  Aligned_cols=168  Identities=39%  Similarity=0.694  Sum_probs=143.8

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      .....+||+++|++|+|||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            3567899999999999999999999988876544 477777777888889999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCeEEEEccCCCCC
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAR-EYGCLFIECSAKTRVN  164 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~  164 (210)
                      +++|||++++.++..+.. |+..+.....   ..++|+++|+||+|+. .+.+..+++..++. ..+++++++||+++.|
T Consensus        83 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATN  160 (177)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence            999999999999999877 7777665432   2678999999999996 45567778888887 5678899999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 028381          165 VQQCFEELVLKILDT  179 (210)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (210)
                      ++++|+++.+.+++.
T Consensus       161 i~~l~~~l~~~~~~~  175 (177)
T 1wms_A          161 VAAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999999764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=8.4e-33  Score=196.23  Aligned_cols=164  Identities=54%  Similarity=0.854  Sum_probs=140.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +.+||+++|++|+|||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            5689999999999999999999998875544 477777777778888888999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      |+|++++.++..+.. |+..+.... ..++|+++|+||+|+ ..+....+++..++...+++++++||+++.|++++|.+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  158 (170)
T 1g16_A           82 VYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  158 (170)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            999999999998887 777776543 457899999999999 44556777888899999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028381          172 LVLKILDT  179 (210)
Q Consensus       172 l~~~~~~~  179 (210)
                      +.+.+.++
T Consensus       159 l~~~~~~~  166 (170)
T 1g16_A          159 LAKLIQEK  166 (170)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99998765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=4.8e-33  Score=196.72  Aligned_cols=164  Identities=37%  Similarity=0.589  Sum_probs=142.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|+|||||+++|.++.+...+. +.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            35899999999999999999999988766555 444 3446667788999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      |+|++++.++..+.. |...+.......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus        81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  159 (167)
T 1kao_A           81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence            999999999998888 6666655555568999999999999777777788889999999999999999999999999999


Q ss_pred             HHHHHHc
Q 028381          172 LVLKILD  178 (210)
Q Consensus       172 l~~~~~~  178 (210)
                      +.+.+.+
T Consensus       160 l~~~~~~  166 (167)
T 1kao_A          160 IVRQMNY  166 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9998754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=5.9e-33  Score=200.60  Aligned_cols=166  Identities=30%  Similarity=0.439  Sum_probs=138.5

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      .....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||++|++.+... ..+++.+|+
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            34577999999999999999999999998765554 666555 445677889999999999999887774 568899999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc-CCCCCH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA-KTRVNV  165 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i  165 (210)
                      +++|||++++.++..+.. |+..+.....  ..++|+++|+||+|+...+.+..+++..++...+++++++|| +++.|+
T Consensus        95 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv  173 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV  173 (187)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence            999999999999999987 7777765432  257899999999999777778888899999999999999999 899999


Q ss_pred             HHHHHHHHHHHHc
Q 028381          166 QQCFEELVLKILD  178 (210)
Q Consensus       166 ~~~~~~l~~~~~~  178 (210)
                      +++|+++++.+.+
T Consensus       174 ~~lf~~l~~~i~~  186 (187)
T 3c5c_A          174 QHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.6e-32  Score=198.07  Aligned_cols=166  Identities=30%  Similarity=0.576  Sum_probs=142.9

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   92 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   92 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence            44678999999999999999999999988766554 555444 4456778888999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEE
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFI  155 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~  155 (210)
                      +++|||++++.++..+...|+..+...  ..++|+++|+||+|+...            +.+..+++..++...++ +++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV  170 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence            999999999999999874588888764  347899999999999654            35677888999999997 899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHc
Q 028381          156 ECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ++||+++.|++++|+++.+.++.
T Consensus       171 ~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          171 ECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EeeCCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999998864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=4.2e-33  Score=199.36  Aligned_cols=169  Identities=33%  Similarity=0.550  Sum_probs=143.7

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ....+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            456799999999999999999999988875433 3666667777777776 67899999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhcc-CCCCc-EEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCI-KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      +++|||++++.+++.+.. |+..+..+.. ..+.| +++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus        83 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  161 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF  161 (178)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence            999999999999998877 7777765322 12445 89999999997766777888899999999999999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028381          167 QCFEELVLKILDTP  180 (210)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (210)
                      ++|++|.+.+.+..
T Consensus       162 ~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          162 LCFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999986654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=203.37  Aligned_cols=168  Identities=37%  Similarity=0.654  Sum_probs=136.9

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ......+||+|+|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  102 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD  102 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence            44567799999999999999999999998875544 47787887788888999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC------CCceecHHHHHHHHHHhCCeEEEEccCC
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE------SERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (210)
                      ++|+|||++++.++..+.. |+..+.... ..++|+++|+||+|+.      ..+.+..+++..++...+++++++||++
T Consensus       103 ~iilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  180 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIRE-WVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKD  180 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTT
T ss_pred             EEEEEEECCChHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence            9999999999999999887 877776542 3578999999999995      3456778888999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHc
Q 028381          162 RVNVQQCFEELVLKILD  178 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~  178 (210)
                      +.|++++|.+|.+.+.+
T Consensus       181 g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          181 GSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             CTTHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998854

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=9.1e-33  Score=197.62  Aligned_cols=168  Identities=38%  Similarity=0.640  Sum_probs=144.8

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .+....+||+|+|++|+|||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus         9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   88 (179)
T 2y8e_A            9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST   88 (179)
T ss_dssp             ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred             cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence            34456799999999999999999999988876554 47777777788888999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ++++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        89 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (179)
T 2y8e_A           89 VAVVVYDITNTNSFHQTSK-WIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  166 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            9999999999999999887 776666532 45789999999999977777778888999999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 028381          168 CFEELVLKILD  178 (210)
Q Consensus       168 ~~~~l~~~~~~  178 (210)
                      +|++|.+.+.+
T Consensus       167 l~~~l~~~~~~  177 (179)
T 2y8e_A          167 LFRRVAAALPG  177 (179)
T ss_dssp             HHHHHHHTCC-
T ss_pred             HHHHHHHHHhh
Confidence            99999987643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.6e-33  Score=201.35  Aligned_cols=167  Identities=31%  Similarity=0.469  Sum_probs=143.6

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            3567999999999999999999999998876555 555443 45577888899999999999888 77788889999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC-CHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQC  168 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~  168 (210)
                      ++|||++++.+++.+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++. |++++
T Consensus       103 ilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l  181 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI  181 (196)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence            99999999999999987 77777765556789999999999997767778888999999999999999999999 99999


Q ss_pred             HHHHHHHHHcCC
Q 028381          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |+++.+.+.+.+
T Consensus       182 ~~~l~~~i~~~~  193 (196)
T 2atv_A          182 FYELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999987643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=6.9e-33  Score=204.60  Aligned_cols=171  Identities=37%  Similarity=0.693  Sum_probs=144.7

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCe----------EEEEEEEeCCCcccccc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGK----------KLKLAIWDTAGQERFRT   77 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~l~D~~g~~~~~~   77 (210)
                      .+.++.+||+|+|++|||||||+++|+++.+...+. +.+.++....+.+++.          .+.+.+||+||++.+..
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   99 (217)
T 2f7s_A           20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS   99 (217)
T ss_dssp             -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence            344678999999999999999999999888754333 5666666666666665          78999999999999999


Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEE
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC  157 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      .+..+++.+|++|+|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++
T Consensus       100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  178 (217)
T 2f7s_A          100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET  178 (217)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence            99999999999999999999999998887 77766654333679999999999997767777888999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCC
Q 028381          158 SAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ||+++.|++++|++|.+.+.++.
T Consensus       179 Sa~~g~gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          179 SAATGQNVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999987643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=2.5e-32  Score=201.35  Aligned_cols=166  Identities=32%  Similarity=0.563  Sum_probs=123.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||+++|.++.+...+. +.+. .....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFE-RYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCE-EEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccce-eEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            467999999999999999999999888765554 4433 33455778888999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-eEEEE
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGC-LFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~  157 (210)
                      +|||++++.++..+...|+..+...  ..++|+++|+||+|+....            .+..+++..++...++ +++++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  188 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC  188 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence            9999999999999875588888764  3578999999999996543            5667788899999997 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCC
Q 028381          158 SAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ||++|.|++++|+++.+.+++.+
T Consensus       189 SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          189 SARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999998664

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=2.8e-32  Score=199.02  Aligned_cols=169  Identities=28%  Similarity=0.463  Sum_probs=135.8

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ......+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            345678999999999999999999999888765544 554433 455677888899999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-eE
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LF  154 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~  154 (210)
                      ++++|||++++.++..+...|+..+....  .++|+++|+||+|+..            .+.+..+++..++...+. ++
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY  171 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence            99999999999999998755888777643  4799999999999964            245677888899998887 89


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHcCC
Q 028381          155 IECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       155 ~~~Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      +++||+++.|++++|+++++.+.+..
T Consensus       172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          172 IECSALTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHhccc
Confidence            99999999999999999999987543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.1e-31  Score=194.19  Aligned_cols=168  Identities=33%  Similarity=0.503  Sum_probs=133.0

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +....+||+++|++|||||||+++|.++.+...+. +.+. .....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            33567999999999999999999999888766555 4443 334567778888999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      +++|||+++..++..+.. |+..+.......++|+++|+||+|+.. +....+++..++...+++++++||+++.|++++
T Consensus        96 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  173 (190)
T 3con_A           96 FLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA  173 (190)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999998877 777777665556799999999999965 456677888999999999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028381          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |++|.+.+.+.+
T Consensus       174 ~~~l~~~~~~~~  185 (190)
T 3con_A          174 FYTLVREIRQYR  185 (190)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            999999987543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=5.7e-32  Score=194.71  Aligned_cols=166  Identities=30%  Similarity=0.538  Sum_probs=141.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|+|||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            357999999999999999999999888765554 444433 455678899999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEE
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (210)
                      +|||++++.++..+...|+..+....  .++|+++|+||+|+...            +.+..+++..++...+. +++++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence            99999999999998755888777643  37899999999998653            35667788889998887 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCC
Q 028381          158 SAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ||++|.|++++|+++.+.+.+.+
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          160 SALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             cCCCccCHHHHHHHHHHHHhccc
Confidence            99999999999999999996554

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=5.2e-32  Score=193.81  Aligned_cols=162  Identities=23%  Similarity=0.345  Sum_probs=135.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||+++|.++.+..+.++.+..+ ...+.+++..+.+.+||+||++.     ..+++++|++++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            457999999999999999999999999877556666443 56677888899999999999876     356788999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKE--SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~  166 (210)
                      |||++++.++..+.. |+..+.....  ..++|+++|+||+|+.  ..+.+..+++..++... +++++++||++|.|++
T Consensus        79 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           79 VFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            999999999999988 6655554322  2578999999999993  45567788888888876 6899999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028381          167 QCFEELVLKILDTP  180 (210)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (210)
                      ++|+++.+.+.+..
T Consensus       158 ~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          158 RVFQEVAQKVVTLR  171 (178)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=2.9e-32  Score=196.35  Aligned_cols=165  Identities=27%  Similarity=0.534  Sum_probs=139.9

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            4567999999999999999999999988865543 665554 34567788889999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CeEEE
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFIE  156 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~  156 (210)
                      ++|||++++.++..+...|...+..+  ..++|+++|+||+|+...            +.+..+++..++...+ .++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  160 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  160 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence            99999999999999854488877764  357899999999999642            4567788899999888 68999


Q ss_pred             EccC-CCCCHHHHHHHHHHHHHc
Q 028381          157 CSAK-TRVNVQQCFEELVLKILD  178 (210)
Q Consensus       157 ~Sa~-~~~~i~~~~~~l~~~~~~  178 (210)
                      +||+ ++.|++++|+++.+.+++
T Consensus       161 ~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          161 CSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eeecCCCcCHHHHHHHHHHHHhc
Confidence            9999 689999999999998875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=1.4e-31  Score=188.84  Aligned_cols=162  Identities=33%  Similarity=0.555  Sum_probs=139.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|+|||||+++|.++.+...+. +.+. .....+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            5899999999999999999999888766554 4443 3355667788889999999999999898899999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      +|+++..++..+.. |...+.......++|+++|+||+|+.. .....+++..++...+++++++||+++.|++++|+++
T Consensus        82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999998877 777777655556799999999999865 4566778888999999999999999999999999999


Q ss_pred             HHHHHc
Q 028381          173 VLKILD  178 (210)
Q Consensus       173 ~~~~~~  178 (210)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=4.9e-32  Score=199.29  Aligned_cols=169  Identities=53%  Similarity=0.844  Sum_probs=143.4

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .+....++|+|+|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            34567799999999999999999999988875443 47777777778888998899999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+ ..+.+..+++..++...+++++++||+++.|+++
T Consensus        95 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  171 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNE  171 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHT-TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999998887 777776543 347899999999999 4555667788889999999999999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 028381          168 CFEELVLKILDTP  180 (210)
Q Consensus       168 ~~~~l~~~~~~~~  180 (210)
                      +|.+|.+.+.+..
T Consensus       172 l~~~l~~~~~~~~  184 (213)
T 3cph_A          172 IFFTLAKLIQEKI  184 (213)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999886643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=2.1e-32  Score=202.18  Aligned_cols=177  Identities=30%  Similarity=0.458  Sum_probs=145.0

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      ......+||+|+|++|||||||+++|+++.+...+ ++.+.+.....+... +..+.+.+||+||++.+...+..++..+
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            44567899999999999999999999988876544 366666655555444 3448999999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |++++|+|++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+.+..++...+++++++||++|.|++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLAR-WVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFG  163 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred             CEEEEEEeCCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence            99999999999999999987 877776643 4468999999999998777788888888888899999999999999999


Q ss_pred             HHHHHHHHHHHcCCCcccccc
Q 028381          167 QCFEELVLKILDTPSLLAEGS  187 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~~~~  187 (210)
                      ++|.++.+.+.+.........
T Consensus       164 ~l~~~l~~~~~~~~~~~~~~~  184 (218)
T 4djt_A          164 LPFLHLARIFTGRPDLIFVSN  184 (218)
T ss_dssp             HHHHHHHHHHHCCTTCCBCSC
T ss_pred             HHHHHHHHHHhcccccccccc
Confidence            999999999998887765443

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.1e-31  Score=195.98  Aligned_cols=164  Identities=36%  Similarity=0.616  Sum_probs=140.2

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeE----------------------------
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKK----------------------------   61 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------------------------   61 (210)
                      .+..+||+|+|++|+|||||+++|++..+...+. +.+.++....+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            3567999999999999999999999998765444 77777777767766655                            


Q ss_pred             ---------EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028381           62 ---------LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        62 ---------~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (210)
                               +.+.+||+||++.+...+..+++.+|++++|+|++++.++..+.. |+..+....   +.|+++|+||+| 
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~---~~piilv~NK~D-  158 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKISS---NYIIILVANKID-  158 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHHS---CCEEEEEEECTT-
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhhC---CCcEEEEEECCC-
Confidence                     899999999999999999999999999999999999999998887 777776542   389999999999 


Q ss_pred             CCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      .....+..+++..++...+++++++||+++.|++++|++|.+.+.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            55566778889999999999999999999999999999999988653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=1.8e-31  Score=194.94  Aligned_cols=164  Identities=32%  Similarity=0.582  Sum_probs=141.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||+++|.++.+...+. +.+.++. ..+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            567999999999999999999999988866554 5555543 34677888899999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEE
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (210)
                      +|||++++.++..+...|...+...  ..++|+++|+||+|+...            +.+..+++..++...+. +++++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC  179 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence            9999999999999865588887764  357899999999999765            34677788899999888 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHc
Q 028381          158 SAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ||+++.|++++|++|.+.+++
T Consensus       180 SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999998864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=3e-32  Score=195.42  Aligned_cols=168  Identities=36%  Similarity=0.635  Sum_probs=130.2

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ....+||+++|++|||||||+++|.++.+...+. +.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            4567999999999999999999999988765544 77777777777776 567899999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCC-ceecHHHHHHHHH-HhCCeEEEEccCCCC
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESE-RVVTKKEGINFAR-EYGCLFIECSAKTRV  163 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  163 (210)
                      +++|||++++.+++.+.. |+..+.....   ..++|+++|+||+|+... +.+..+++..++. ..+.+++++||+++.
T Consensus        85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            999999999999999887 7766655432   267899999999999543 4466777888887 456889999999999


Q ss_pred             CHHHHHHHHHHHHHcC
Q 028381          164 NVQQCFEELVLKILDT  179 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (210)
                      |++++|+++.+.+.++
T Consensus       164 gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          164 NVDTAFEEIARSALQQ  179 (182)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=5e-32  Score=198.48  Aligned_cols=166  Identities=27%  Similarity=0.536  Sum_probs=139.9

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      .....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  102 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA  102 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence            34678999999999999999999999998866544 665554 3456778888999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CeEE
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFI  155 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~  155 (210)
                      +++|||++++.++..+...|+..+....  .++|+++|+||+|+...            +.+..+++..++...+ .+++
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  180 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI  180 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEE
Confidence            9999999999999998544888877643  57899999999999642            4567788899998887 6899


Q ss_pred             EEccC-CCCCHHHHHHHHHHHHHc
Q 028381          156 ECSAK-TRVNVQQCFEELVLKILD  178 (210)
Q Consensus       156 ~~Sa~-~~~~i~~~~~~l~~~~~~  178 (210)
                      +|||+ ++.|++++|.++++.+++
T Consensus       181 e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          181 ECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EeeeccCCcCHHHHHHHHHHHHhh
Confidence            99999 689999999999998875

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.2e-32  Score=191.97  Aligned_cols=164  Identities=29%  Similarity=0.433  Sum_probs=136.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|+|||||+++|.++.+...+. +.+.++ ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            46899999999999999999999988764443 544444 3445678888999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      |+|++++.++..+.. |...+.... ...++|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|+
T Consensus        81 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (172)
T 2erx_A           81 VYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ  159 (172)
T ss_dssp             EEETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence            999999999988877 555554432 235789999999999977777777888888999999999999999999999999


Q ss_pred             HHHHHHHc
Q 028381          171 ELVLKILD  178 (210)
Q Consensus       171 ~l~~~~~~  178 (210)
                      ++.+.+.+
T Consensus       160 ~l~~~~~~  167 (172)
T 2erx_A          160 ELLNLEKR  167 (172)
T ss_dssp             HHHHTCCS
T ss_pred             HHHHHHhh
Confidence            99987643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.9e-32  Score=200.67  Aligned_cols=168  Identities=24%  Similarity=0.358  Sum_probs=111.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCCC-CCceeeeEEEEEEECCe--EEEEEEEeCCCccccccchhhcccCc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEELS-PTIGVDFKVKYVDVGGK--KLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~--~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      ...+||+|+|++|||||||+++|.++  .+...+ ++.+.++....+.+++.  .+.+.+||+||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            57799999999999999999999988  665444 36666677777778877  89999999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCC-CceecHHHHHHHHHHhCCeEEEEccCC-C
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKES-ERVVTKKEGINFAREYGCLFIECSAKT-R  162 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~  162 (210)
                      |++++|||++++.++..+.. |+..+.....  ..++|+++|+||+|+.. .+.+..+++..++...+++++++||++ +
T Consensus        98 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  176 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG  176 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC----
T ss_pred             cEEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCC
Confidence            99999999999999999987 8888776543  25799999999999987 677788889999999999999999999 9


Q ss_pred             CCHHHHHHHHHHHHHcCC
Q 028381          163 VNVQQCFEELVLKILDTP  180 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~  180 (210)
                      .|++++|++|.+.+.+..
T Consensus       177 ~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          177 KDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             ---CHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHH
Confidence            999999999999886543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=4.9e-32  Score=198.38  Aligned_cols=164  Identities=29%  Similarity=0.506  Sum_probs=137.1

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      .....+||+++|++|||||||+++|.++.+...+. +.+ ......+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV  104 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            34567999999999999999999999988876555 443 4445567778889999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce------------ecHHHHHHHHHHhCC-eEE
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV------------VTKKEGINFAREYGC-LFI  155 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~-~~~  155 (210)
                      +++|||++++.++..+...|+..+....  .++|+++|+||+|+.....            +..+++..++...++ +++
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  182 (204)
T 4gzl_A          105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL  182 (204)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence            9999999999999999755888887653  6789999999999965533            667788889998886 599


Q ss_pred             EEccCCCCCHHHHHHHHHHHH
Q 028381          156 ECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      ++||++|.|++++|+++.+.+
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          183 ECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTT
T ss_pred             EeeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.4e-31  Score=194.27  Aligned_cols=166  Identities=32%  Similarity=0.555  Sum_probs=138.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||+++|.++.+...+. +.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            467899999999999999999999988876554 5554443 34677888899999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEE
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (210)
                      +|||++++.++..+...|...+...  ..++|+++|+||+|+...            +.+..+++..++...+. +++++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC  179 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence            9999999999999855588877764  357899999999999654            34667778888888888 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCC
Q 028381          158 SAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ||+++.|++++|++|.+.+++..
T Consensus       180 SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          180 SAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999997654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=2.2e-31  Score=193.12  Aligned_cols=167  Identities=26%  Similarity=0.367  Sum_probs=134.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhcccCccE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRTLTSSYYRGAQG   88 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~   88 (210)
                      ...+||+++|++|||||||+++|.+..  +...+++.+.++....+.+++..+.+.+||++|.+. ...++..+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            456999999999999999999999643  344444566666667788899999999999999776 44566677888999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      +++|||+++..+|+.+.. |...+.......++|+++|+||+|+...+.+..+++..++...++++++|||++|.|++++
T Consensus        84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            999999999999999887 6666655433457899999999999766667777788888888999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028381          169 FEELVLKILDT  179 (210)
Q Consensus       169 ~~~l~~~~~~~  179 (210)
                      |.++.+.+...
T Consensus       163 f~~l~~~~~~~  173 (192)
T 2cjw_A          163 FEGIVRQVRLR  173 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.98  E-value=1.3e-31  Score=190.28  Aligned_cols=161  Identities=22%  Similarity=0.322  Sum_probs=126.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|+|||||+++|.++.+....++.+....  .+.++  ...+.+||+||++.+...+..+++.+|++++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE--TVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceE--EEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            3568999999999999999999999988766666664443  33344  5789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-----FAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |+|++++.++..... |+..+.......++|+++|+||+|+.....  .++...     .+...+++++++||+++.|++
T Consensus        81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           81 VVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            999999999998887 444443322336789999999999965432  122221     122345689999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028381          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|+++.+.+.++
T Consensus       158 ~l~~~l~~~i~~~  170 (171)
T 1upt_A          158 EAMEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.98  E-value=4.3e-32  Score=200.94  Aligned_cols=172  Identities=33%  Similarity=0.556  Sum_probs=148.0

Q ss_pred             cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028381            7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG   85 (210)
Q Consensus         7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (210)
                      .+......+||+++|++|||||||+++|+.+.+... .++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus         8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (221)
T 3gj0_A            8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ   87 (221)
T ss_dssp             STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence            445667889999999999999999999776665443 4588888888888899999999999999999999999999999


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCH
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (210)
                      +|++++|||++++.++..+.. |+..+...  ..++|+++|+||+|+.+.....  +...++...+++++++||+++.|+
T Consensus        88 ~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi  162 (221)
T 3gj0_A           88 AQCAIIMFDVTSRVTYKNVPN-WHRDLVRV--CENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNF  162 (221)
T ss_dssp             CCEEEEEEETTCHHHHHTHHH-HHHHHHHH--STTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTCEEEECBGGGTBTT
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECCccccccccH--HHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999987 87777764  3578999999999996544322  456677888999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCcc
Q 028381          166 QQCFEELVLKILDTPSLL  183 (210)
Q Consensus       166 ~~~~~~l~~~~~~~~~~~  183 (210)
                      +++|.+|.+.+.+.....
T Consensus       163 ~~l~~~l~~~l~~~~~~~  180 (221)
T 3gj0_A          163 EKPFLWLARKLIGDPNLE  180 (221)
T ss_dssp             THHHHHHHHHHHTCTTCC
T ss_pred             HHHHHHHHHHHHhCcccc
Confidence            999999999998887654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.98  E-value=2.3e-32  Score=196.19  Aligned_cols=164  Identities=32%  Similarity=0.607  Sum_probs=126.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|+|||||++++.++.+...+. +.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            456999999999999999999999888765443 4443332 23445667788999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce----------ecHHHHHHHHHHhCC-eEEEEcc
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV----------VTKKEGINFAREYGC-LFIECSA  159 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  159 (210)
                      +|||++++.++..+...|+..+....  .++|+++|+||+|+.....          +..+++..++...+. +++++||
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            99999999999998855888887653  4789999999999865544          367788889998896 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHc
Q 028381          160 KTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (210)
                      +++.|++++|+++.+.+++
T Consensus       163 ~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998854

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.98  E-value=5.4e-32  Score=196.58  Aligned_cols=167  Identities=21%  Similarity=0.213  Sum_probs=133.1

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CCCceeeeEEEEE-EECCeEEEEEEEeCCCccccc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------SPTIGVDFKVKYV-DVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      ......+||+++|++|||||||++.+.+......           .++.+.++....+ .+++..+.+.+||+||++.+.
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            4557889999999999999999977765433221           1244444443333 556778999999999999999


Q ss_pred             cchhhcccCccEEEEEEECCC------cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh
Q 028381           77 TLTSSYYRGAQGIIMVYDVTR------RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY  150 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  150 (210)
                      ..+..+++++|++|+|||+++      ..++..+.. |+..+.  ....++|+++|+||+|+.+.  +..+++..++...
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~--~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~  163 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYG--LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPE  163 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTT--CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTT
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhc--cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhc
Confidence            999999999999999999994      456666655 655553  23467999999999999654  7778889999999


Q ss_pred             CC-eEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028381          151 GC-LFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       151 ~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ++ +++++||+++.|++++|++|.+.+.++.
T Consensus       164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          164 GKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             CCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            99 9999999999999999999999987654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.98  E-value=1.2e-33  Score=206.10  Aligned_cols=168  Identities=55%  Similarity=0.918  Sum_probs=137.1

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ..++.+||+|+|++|||||||+++|.++.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  108 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG  108 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence            34678999999999999999999999888765443 66777777788889999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      +++|||++++.+++.+.. |+..+... ...++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus       109 ~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l  186 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  186 (199)
T ss_dssp             EEECC-CCCSHHHHHHHH-HHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999988 87777653 2457999999999999877777777788889999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028381          169 FEELVLKILDT  179 (210)
Q Consensus       169 ~~~l~~~~~~~  179 (210)
                      |.+|.+.+.++
T Consensus       187 ~~~l~~~l~~~  197 (199)
T 3l0i_B          187 FMTMAAEIKKR  197 (199)
T ss_dssp             HHHHTTTTTTT
T ss_pred             HHHHHHHHHHh
Confidence            99998877543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.98  E-value=2.3e-31  Score=193.67  Aligned_cols=171  Identities=13%  Similarity=0.223  Sum_probs=124.9

Q ss_pred             cccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc
Q 028381            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL--SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY   82 (210)
Q Consensus         5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   82 (210)
                      .....+.....||+|+|++|||||||+++|+++.+...  .++.+.....    +++..+.+.+||+||++.+...+..+
T Consensus         8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~   83 (199)
T 4bas_A            8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGAKKFRGLWETY   83 (199)
T ss_dssp             --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE----EEETTEEEEEEEECCSGGGGGGGGGG
T ss_pred             cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHH
Confidence            44456678889999999999999999999999988763  4466644432    23456789999999999999999999


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhcc-------CCCCcEEEEEeCCCCCCCcee---cHHHHHH-HHHHhC
Q 028381           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-------NQDCIKLLVGNKVDKESERVV---TKKEGIN-FAREYG  151 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~-~~~~~~  151 (210)
                      ++.+|++|+|||++++.++..+.. |+..+.....       ..++|+++|+||+|+......   ....... ++...+
T Consensus        84 ~~~~d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (199)
T 4bas_A           84 YDNIDAVIFVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHP  162 (199)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSC
T ss_pred             HhcCCEEEEEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCe
Confidence            999999999999999999999988 4444432211       137899999999999765321   1111111 114467


Q ss_pred             CeEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028381          152 CLFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ++++++||+++.|++++|++|.+.+.+..
T Consensus       163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          163 FVIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             EEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             eEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999987654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=7.5e-32  Score=190.41  Aligned_cols=157  Identities=22%  Similarity=0.371  Sum_probs=121.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+++|.++.+....++.+...  ..+.  ...+.+.+||+||++.+...+..+++++|++++|+|
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE--EEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeE--EEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999888876666666332  2233  345789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHHHHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++++.++..+.. |+..+.......+.|+++|+||+|+....  ..+++....     ...+++++++||+++.|++++|
T Consensus        77 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           77 SNDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             TTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999998887 55555433334678999999999996542  222222211     1234579999999999999999


Q ss_pred             HHHHHHHHc
Q 028381          170 EELVLKILD  178 (210)
Q Consensus       170 ~~l~~~~~~  178 (210)
                      +++.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999988754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.6e-30  Score=188.28  Aligned_cols=157  Identities=22%  Similarity=0.304  Sum_probs=126.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .+.+||+++|++|||||||++++.++.+..+.++.+.+.  ..+.+++  +.+.+||+||++.+...+..+++.+|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            356799999999999999999999998876666666543  3445555  789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------------hCCeEEEEcc
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------------YGCLFIECSA  159 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  159 (210)
                      |+|++++.++..+.. |+..+.......++|+++|+||+|+..  ....+++.+....            .++++++|||
T Consensus        97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            999999999999887 655554433346799999999999975  3455555555432            3467999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028381          160 KTRVNVQQCFEELVLK  175 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~  175 (210)
                      ++|.|++++|+++.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999999753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=7.5e-31  Score=191.20  Aligned_cols=157  Identities=18%  Similarity=0.277  Sum_probs=120.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .+.++|+++|++|||||||+++|.++.+....++.+.+.  ..+.+++  +.+.+|||||++.+...+..+++.+|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            346899999999999999999999988866656666554  3445555  789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----------------hCCeE
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----------------YGCLF  154 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  154 (210)
                      |+|++++.++..+.. |+..+.......++|+++|+||+|+..  .+..+++..++..                 .++++
T Consensus        99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            999999999999888 655554433346799999999999975  4556666666542                 24579


Q ss_pred             EEEccCCCCCHHHHHHHHHHH
Q 028381          155 IECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       155 ~~~Sa~~~~~i~~~~~~l~~~  175 (210)
                      ++|||++|.|++++|+++.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=6.5e-30  Score=184.21  Aligned_cols=161  Identities=23%  Similarity=0.361  Sum_probs=126.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||++++.++......++.+.+..  .+.++  ...+.+||+||++.+...+..+++.+|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            5679999999999999999999998885455556664433  33343  4789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  166 (210)
                      |+|++++.++..+.. |+..+.......++|+++|+||+|+.....  .++......     ..+++++++||+++.|++
T Consensus        92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           92 VVDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            999999999999887 555444333346799999999999965432  233332222     235679999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028381          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|+++.+.+.++
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998765

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=2.1e-31  Score=193.29  Aligned_cols=161  Identities=22%  Similarity=0.355  Sum_probs=118.9

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ....+||+++|++|||||||+++|.++.+....++.+..  ...+..  ..+.+.+||+||++.+...+..+++.+|+++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            356799999999999999999999988876544444422  222333  4478999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNV  165 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i  165 (210)
                      +|+|++++.++..+.. |+..+.......++|+++|+||+|+....  ..+++....     ...+++++++||+++.|+
T Consensus       102 lv~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A          102 FVVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            9999999999999887 55555433334579999999999996542  222222211     122457999999999999


Q ss_pred             HHHHHHHHHHHHc
Q 028381          166 QQCFEELVLKILD  178 (210)
Q Consensus       166 ~~~~~~l~~~~~~  178 (210)
                      +++|++|.+.+.+
T Consensus       179 ~~l~~~l~~~i~~  191 (192)
T 2b6h_A          179 YDGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998743

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=4.5e-31  Score=190.81  Aligned_cols=162  Identities=21%  Similarity=0.307  Sum_probs=126.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||+++|.++.+....++.+....  .+..+  .+.+.+|||||++.+...+..+++.+|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE--TLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEE--EEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            4679999999999999999999998887665556664433  33333  5789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH-----HHHhCCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF-----AREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |+|+++++++..... |+..+.......++|+++|+||+|+.....  .+++...     +...+++++++||+++.|++
T Consensus        96 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           96 VVDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            999999999998887 444443333346799999999999965422  1222221     12235579999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028381          167 QCFEELVLKILDTP  180 (210)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (210)
                      ++|+++.+.+.+..
T Consensus       173 ~l~~~l~~~i~~~~  186 (189)
T 2x77_A          173 EGMDWLVERLREQG  186 (189)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.9e-30  Score=186.28  Aligned_cols=164  Identities=22%  Similarity=0.322  Sum_probs=124.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||+++|.++.+....++.+.+..  .+.+++  +.+.+||+||++.+...+..+++++|++++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            4579999999999999999999998887654456654433  333443  789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  166 (210)
                      |+|+++++++..+.. |+..+.......+.|+++|+||+|+...  ...+++.....     ..+++++++||+++.|++
T Consensus        90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           90 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            999999999999988 6655554333467999999999999653  23344443332     235689999999999999


Q ss_pred             HHHHHHHHHHHcCCCc
Q 028381          167 QCFEELVLKILDTPSL  182 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~~  182 (210)
                      ++|++|.+.+.+....
T Consensus       167 ~l~~~l~~~~~~~~~~  182 (187)
T 1zj6_A          167 QGLEWMMSRLKIRLEH  182 (187)
T ss_dssp             HHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999998665543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=1.4e-30  Score=187.00  Aligned_cols=162  Identities=22%  Similarity=0.324  Sum_probs=122.7

Q ss_pred             cccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028381            7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         7 ~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      ........+||+++|++|||||||+++|.++.+....++.+.+..  .+.+++  +.+.+||+||++.+...+..+++.+
T Consensus        14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (181)
T 2h17_A           14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNT   89 (181)
T ss_dssp             -------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred             ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence            344556789999999999999999999999988555556665543  333443  7899999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCC
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKT  161 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~  161 (210)
                      |++++|+|++++.++..+.. |+..+.......++|+++|+||+|+...  ...+++....     ...+++++++||++
T Consensus        90 d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  166 (181)
T 2h17_A           90 EFVIVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALT  166 (181)
T ss_dssp             CEEEEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence            99999999999999999888 5444443223467999999999999653  2333333332     12345799999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028381          162 RVNVQQCFEELVLK  175 (210)
Q Consensus       162 ~~~i~~~~~~l~~~  175 (210)
                      +.|++++|++|.+.
T Consensus       167 g~gi~~l~~~l~~~  180 (181)
T 2h17_A          167 GEGLCQGLEWMMSR  180 (181)
T ss_dssp             TBTHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHhh
Confidence            99999999999764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=2.6e-31  Score=191.00  Aligned_cols=161  Identities=25%  Similarity=0.334  Sum_probs=123.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...++|+++|++|||||||+++|.++.+....++.+.+.  ..+.++  .+.+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            567999999999999999999999887655445555433  334444  4789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |+|++++.++..+.. |+..+.......++|+++|+||+|+.....  .+++....     ...+++++++||++|.|++
T Consensus        90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           90 VIDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999998877 554443323346789999999999975432  22222221     1234579999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028381          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|+++.+.+.+.
T Consensus       167 ~l~~~l~~~~~~~  179 (181)
T 1fzq_A          167 DGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1.1e-30  Score=188.84  Aligned_cols=161  Identities=22%  Similarity=0.321  Sum_probs=124.5

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....+||+|+|++|||||||+++|.++.+... .++.+.++..  +  ....+.+.+||+||++.+...+..+++.+|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            35679999999999999999999999888643 3466665543  2  23457899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCC
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVN  164 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  164 (210)
                      ++|+|++++.++..+.. |+..+.......++|+++|+||+|+....  ..++......     ..+++++++||+++.|
T Consensus        95 i~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  171 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDN  171 (188)
T ss_dssp             EEEEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCC
Confidence            99999999999999888 55444432334679999999999996542  2222222111     2345799999999999


Q ss_pred             HHHHHHHHHHHHHc
Q 028381          165 VQQCFEELVLKILD  178 (210)
Q Consensus       165 i~~~~~~l~~~~~~  178 (210)
                      ++++|++|.+.+.+
T Consensus       172 v~~l~~~l~~~~~~  185 (188)
T 1zd9_A          172 IDITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987744

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.8e-29  Score=182.63  Aligned_cols=162  Identities=21%  Similarity=0.268  Sum_probs=123.3

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCC-CCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN-FEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      ......+||+++|++|||||||+++|.+.. +.. ..++.+.  ....+.+++  +.+.+||+||++.+...+..+++.+
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~   91 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEG   91 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence            344577999999999999999999999887 333 3335553  333444443  6899999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccC--CCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEcc
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN--QDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSA  159 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa  159 (210)
                      |++++|+|++++.++..+.. |+..+......  .++|+++|+||+|+...  ...+++..+..     ..+++++++||
T Consensus        92 d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa  168 (190)
T 2h57_A           92 QAIIFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDA  168 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccC
Confidence            99999999999999999887 55544433222  57899999999999653  33445555543     23568999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 028381          160 KTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~  177 (210)
                      +++.|++++|++|.+.+.
T Consensus       169 ~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          169 IKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             TTTBTHHHHHHHHHHHC-
T ss_pred             CCCcCHHHHHHHHHHHHH
Confidence            999999999999998774

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=1.4e-28  Score=179.25  Aligned_cols=166  Identities=45%  Similarity=0.772  Sum_probs=142.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ++.++|+++|++|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            46799999999999999999999998876554 47777777777888999999999999999988888888899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|+|+.+..++..+.. |+..+... ...+.|+++|+||+|+...+....++++.++...++.++++||+++.|++++|+
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~  160 (199)
T 2f9l_A           83 LVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK  160 (199)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999988877 76666543 235689999999999976666777788899999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 028381          171 ELVLKILDT  179 (210)
Q Consensus       171 ~l~~~~~~~  179 (210)
                      ++.+.+.+.
T Consensus       161 ~l~~~~~~~  169 (199)
T 2f9l_A          161 NILTEIYRI  169 (199)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=5.1e-29  Score=194.80  Aligned_cols=165  Identities=28%  Similarity=0.528  Sum_probs=141.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...++|+++|++|+|||||++++.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            456999999999999999999999888765554 554443 455678889999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-eEEEE
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (210)
                      +|||++++.++..+...|...+....  .++|+++|+||+|+...            +.+..+++..++...++ +++++
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  309 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  309 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence            99999999999998755888777643  37899999999998543            45677888999999997 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcC
Q 028381          158 SAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ||++|.|++++|+++.+.+++.
T Consensus       310 Sa~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          310 SALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC-
T ss_pred             cCCCCcCHHHHHHHHHHHHhcC
Confidence            9999999999999999998754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=1.1e-30  Score=187.59  Aligned_cols=161  Identities=23%  Similarity=0.340  Sum_probs=123.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||++++.++.+....++.+....  .+.++  ...+.+||+||++.+...+..+++.+|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            5679999999999999999999998887555556664433  33444  3789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----YGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  166 (210)
                      |+|++++.++..+.. |+..+.......++|+++|+||+|+.+.  ...+++......     .+++++++||+++.|++
T Consensus        92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           92 VVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            999999999999887 5555544333567999999999999654  233333333221     23479999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028381          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|+++.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=4.1e-30  Score=186.98  Aligned_cols=168  Identities=21%  Similarity=0.210  Sum_probs=119.0

Q ss_pred             cccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccch---h
Q 028381            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLT---S   80 (210)
Q Consensus         5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~---~   80 (210)
                      .....+..+.+||+++|++|||||||++++.+............+.......+. +..+.+.+||++|++.+....   .
T Consensus        11 ~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   90 (196)
T 3llu_A           11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE   90 (196)
T ss_dssp             ---------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred             CCCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence            444566778899999999999999999988865333211122222233333333 566889999999999887765   7


Q ss_pred             hcccCccEEEEEEECCCc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC-------ceecHHHHHHHHH---
Q 028381           81 SYYRGAQGIIMVYDVTRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE-------RVVTKKEGINFAR---  148 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~---  148 (210)
                      .+++++|++|+|||+++.  +++..+.. |+..+..  ...++|+++|+||+|+...       +.+..+....++.   
T Consensus        91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~  167 (196)
T 3llu_A           91 MIFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL  167 (196)
T ss_dssp             HHHHTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccCCEEEEEEECCCchHHHHHHHHH-HHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence            899999999999999997  44455444 4444432  2457999999999998542       3445556677777   


Q ss_pred             -HhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          149 -EYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       149 -~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                       ..++++++|||++ .|++++|..+++.+
T Consensus       168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence             6688999999999 99999999999875

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=4.1e-32  Score=198.68  Aligned_cols=164  Identities=29%  Similarity=0.527  Sum_probs=135.3

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      .....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 3th5_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV  104 (204)
Confidence            34678999999999999999999999888765544 443333 4445667778889999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-eEE
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGC-LFI  155 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~  155 (210)
                      +++|||++++.++..+...|+..+....  .++|+++|+||+|+....            .+..+++..++...++ +++
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  182 (204)
T 3th5_A          105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL  182 (204)
Confidence            9999999999999998744877776532  378999999999996543            4555667788888887 899


Q ss_pred             EEccCCCCCHHHHHHHHHHHH
Q 028381          156 ECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      ++||++|.|++++|+++.+.+
T Consensus       183 ~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          183 ECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999999998765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=2.7e-28  Score=176.73  Aligned_cols=167  Identities=46%  Similarity=0.791  Sum_probs=143.4

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      ..+.++.++|+++|++|||||||++++.+..+...+ ++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+
T Consensus        23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~  102 (191)
T 1oix_A           23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA  102 (191)
T ss_dssp             -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence            344567899999999999999999999998876544 4788778778888899999999999999998888888888999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      +++++|+|..+..+++.+.. |+..+... ...+.|+++++||.|+.+......++++.++...++.++++|++++.|++
T Consensus       103 ~~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~  180 (191)
T 1oix_A          103 VGALLVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE  180 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999888776 66655542 23568999999999997666677788899999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028381          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      ++|+++.+.+
T Consensus       181 ~l~~~l~~~i  190 (191)
T 1oix_A          181 AAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=2.2e-29  Score=185.42  Aligned_cols=163  Identities=17%  Similarity=0.221  Sum_probs=117.8

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCcccccc-chhhcccCccE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFRT-LTSSYYRGAQG   88 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~d~   88 (210)
                      ....+||+++|++|||||||+++|+++.+...+++....+..  +.+++. .+.+.+|||||++.+.. .+..+++.+|+
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            356799999999999999999999999887766655544433  555544 68899999999998887 78888999999


Q ss_pred             EEEEEECCCcc-cHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHH----------------
Q 028381           89 IIMVYDVTRRD-TFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVVT--KKEGINFAR----------------  148 (210)
Q Consensus        89 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~----------------  148 (210)
                      +++|||+++.. ++.....+|...+... ....++|+++|+||+|+.......  .+.......                
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999854 4666666566655442 234578999999999996543221  111111111                


Q ss_pred             -----------------Hh--CCeEEEEccCCC------CCHHHHHHHHHHH
Q 028381          149 -----------------EY--GCLFIECSAKTR------VNVQQCFEELVLK  175 (210)
Q Consensus       149 -----------------~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~  175 (210)
                                       ..  +++|++|||++|      .|++++|++|.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                             11  567999999999      9999999999875

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=2.6e-29  Score=180.97  Aligned_cols=164  Identities=21%  Similarity=0.365  Sum_probs=120.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC--CCCC-CCCCceeeeEEEEEEE---CCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD--NFEE-LSPTIGVDFKVKYVDV---GGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~--~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .+||+++|++|||||||+++|.+.  .+.. +.++.+.++....+.+   ++..+.+.+||++|++.+...+..+++++|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  3433 3346666655544433   345678999999999998888888899999


Q ss_pred             EEEEEEECCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec---HHHHHHHHHHhCCe----EEEEcc
Q 028381           88 GIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT---KKEGINFAREYGCL----FIECSA  159 (210)
Q Consensus        88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa  159 (210)
                      ++++|||++++ .++..+.. |+..+...  ..+.|+++|+||+|+.....+.   .+....++...+++    ++++||
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~-~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKP-WLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNA  158 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHH-HHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred             EEEEEEeCCcchhHHHHHHH-HHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence            99999999998 47888877 77776653  2478999999999997554332   23345555566776    999999


Q ss_pred             CCCC-CHHHHHHHHHHHHHcCC
Q 028381          160 KTRV-NVQQCFEELVLKILDTP  180 (210)
Q Consensus       160 ~~~~-~i~~~~~~l~~~~~~~~  180 (210)
                      +++. +++++++.+.+.+.+..
T Consensus       159 ~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          159 TEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             TSCCHHHHHHHHHHHHHHHCC-
T ss_pred             ccCchhHHHHHHHHHHHHhccc
Confidence            9997 99999999999886543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=4.3e-29  Score=194.93  Aligned_cols=161  Identities=20%  Similarity=0.350  Sum_probs=119.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+|+|++|||||||+++|.++.+....+|.+..+.    .++...+.+.+|||||++.+...+..+++.+|++|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~----~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE----EEEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE----EEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            3568999999999999999999998887654444443332    223345789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  166 (210)
                      |||++++.++..+..+|...+.. ....++|++||+||+|+.....  .+++.....     ..+++++++||+++.|++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhh-hccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            99999999999998855555443 3345799999999999975432  222222221     224579999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028381          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|++|.+.+.++
T Consensus       316 el~~~l~~~l~~~  328 (329)
T 3o47_A          316 EGLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=9e-29  Score=186.86  Aligned_cols=167  Identities=23%  Similarity=0.286  Sum_probs=120.7

Q ss_pred             ccccceeeEEEEEcCC---------CCcHHHHHHHHhcC---CCCCCCC-Cc-eeeeEEEE--------------EEECC
Q 028381            8 QQEFDYLFKLLMIGDS---------GVGKSSLLLSFTSD---NFEELSP-TI-GVDFKVKY--------------VDVGG   59 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~---------~~GKstli~~l~~~---~~~~~~~-~~-~~~~~~~~--------------~~~~~   59 (210)
                      .......+||+++|++         |||||||+++|.++   .+...+. +. +.++....              ..+++
T Consensus        13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   92 (255)
T 3c5h_A           13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC   92 (255)
T ss_dssp             TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred             CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence            3445677999999999         99999999999984   4433332 22 22222111              11456


Q ss_pred             eEEEEEEEe-----------------------CCCccccccchhhccc---------------------CccEEEEEEEC
Q 028381           60 KKLKLAIWD-----------------------TAGQERFRTLTSSYYR---------------------GAQGIIMVYDV   95 (210)
Q Consensus        60 ~~~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~   95 (210)
                      ..+.+.+||                       ++|++.+...+..+++                     ++|++|+|||+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            778999999                       5666666677777776                     79999999999


Q ss_pred             CCc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCeEEEEccCCCCCHHHHHHHH
Q 028381           96 TRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        96 ~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      +++  .+++.+.. |+..+.......++|+++|+||+|+...+.+  +++..++.. .+++++++||+++.|++++|.+|
T Consensus       173 t~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          173 SRGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             BC----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred             CCCchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence            998  99999887 7777765433457999999999999654443  566777766 47899999999999999999999


Q ss_pred             HHHHH
Q 028381          173 VLKIL  177 (210)
Q Consensus       173 ~~~~~  177 (210)
                      .+.+.
T Consensus       250 ~~~l~  254 (255)
T 3c5h_A          250 VQLID  254 (255)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=6e-27  Score=167.27  Aligned_cols=160  Identities=21%  Similarity=0.229  Sum_probs=118.1

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....++|+++|++|||||||+++|.++.+...+ ++.+.++....+.+++.  .+.+||+||++.+...+...+..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            356789999999999999999999988876543 34444444444555654  567999999999999998899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-------C--CeEEEEccC
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-------G--CLFIECSAK  160 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~  160 (210)
                      ++|+|++++........ + ..+    ...++|+++|+||+|+...   ..++........       +  ++++++||+
T Consensus        83 i~v~d~~~~~~~~~~~~-l-~~~----~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (178)
T 2lkc_A           83 ILVVAADDGVMPQTVEA-I-NHA----KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAK  153 (178)
T ss_dssp             EEEEETTCCCCHHHHHH-H-HHH----GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred             EEEEECCCCCcHHHHHH-H-HHH----HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence            99999998654333322 2 222    2346899999999999653   222233222222       2  579999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCC
Q 028381          161 TRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      ++.|++++|++|.+.+...+.
T Consensus       154 ~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          154 TKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHhhhhhcc
Confidence            999999999999998866543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=5.6e-27  Score=181.47  Aligned_cols=172  Identities=16%  Similarity=0.119  Sum_probs=133.9

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCccccc----------c
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFR----------T   77 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~----------~   77 (210)
                      .+....-.|+++|.+|||||||+|+|++.++....+.++++........... ...+.+|||||.....          .
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence            4556778999999999999999999999988766665555554444433333 6789999999985543          4


Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CeEE
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFI  155 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~  155 (210)
                      .+..++..+|++++|+|+++..+...... |...+..    .++|+++|+||+|+........+....+....+  .+++
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~-~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~  159 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEEI-YQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV  159 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHHH-HHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence            55667889999999999999988877655 6666654    468999999999997445555566677777765  6799


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHcCCCcccc
Q 028381          156 ECSAKTRVNVQQCFEELVLKILDTPSLLAE  185 (210)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~  185 (210)
                      ++||++|.|++++|+++.+.+.+....++.
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~  189 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLPEGEPLFPE  189 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSCBCCCSSCT
T ss_pred             EEeCCCCCCHHHHHHHHHHhCccCCCCCCc
Confidence            999999999999999999999777665544

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=3.4e-27  Score=175.42  Aligned_cols=165  Identities=18%  Similarity=0.058  Sum_probs=113.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccchhh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF---------RTLTSS   81 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~   81 (210)
                      ...++|+|+|++|||||||+++|++..+.. ..+....+.....+...  ...+.+|||||....         ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            457999999999999999999999887641 11111122222222223  367999999998321         111233


Q ss_pred             cccCccEEEEEEECCCcccHHHHH-HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH---HHHHHHHHhC--CeEE
Q 028381           82 YYRGAQGIIMVYDVTRRDTFTNLS-DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK---EGINFAREYG--CLFI  155 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~  155 (210)
                      ++..+|++++|+|++++.++.... ..|+..+...  ..++|+++|+||+|+...+.+..+   ....++...+  ++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence            467889999999999988865221 1244444431  247899999999999766555443   4566666666  8899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHcCC
Q 028381          156 ECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ++||++|.|++++|++|.+.+.+.+
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=2.2e-27  Score=183.73  Aligned_cols=164  Identities=23%  Similarity=0.332  Sum_probs=127.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCC----CCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhcc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL----SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-----RTLTSSYY   83 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~   83 (210)
                      ..+||+++|++|||||||+++|+++.....    .+|.+..+..  +.+++ .+.+.+||+||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            358999999999999999999998743322    2244444432  33334 688999999999887     67788889


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCC--Cce----ecHHHHHHHHHHhC---Ce
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKES--ERV----VTKKEGINFAREYG---CL  153 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~  153 (210)
                      +++|++|+|||++++.+++.+.. |...+... ....++|+++|+||+|+..  .+.    +..+++..++..++   ++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~  157 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI  157 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred             ccCCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence            99999999999999999998876 55444332 1245799999999999976  333    55577888998887   68


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028381          154 FIECSAKTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       154 ~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      ++++||++ .++.++|..+++.+....+
T Consensus       158 ~~~tSa~~-~~i~e~~~~iv~~li~~~~  184 (307)
T 3r7w_A          158 GFPTSIWD-ESLYKAWSQIVCSLIPNMS  184 (307)
T ss_dssp             EEECCTTS-SHHHHHHHHHHHTTCSCHH
T ss_pred             EEEeeecC-ChHHHHHHHHHHHHcCCHH
Confidence            99999999 8999999999887755443

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=4.7e-27  Score=170.32  Aligned_cols=160  Identities=16%  Similarity=0.184  Sum_probs=111.5

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG----------QERFRT   77 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~   77 (210)
                      .+....++|+++|++|||||||+++|.+..+. ...++.+.+.....+..++   .+.+|||||          .+.+..
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (195)
T 1svi_A           18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH
Confidence            34467899999999999999999999988753 3444666666555555544   589999999          555666


Q ss_pred             chhhcccCc---cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH--HHHHH-HHHHhC
Q 028381           78 LTSSYYRGA---QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK--KEGIN-FAREYG  151 (210)
Q Consensus        78 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~  151 (210)
                      .+..+++.+   |++++|+|++++.++....  +...+..    .+.|+++|+||+|+.....+..  +++.. +....+
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCC
Confidence            666666665   9999999999988876643  2233332    5689999999999976544332  22222 222346


Q ss_pred             CeEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          152 CLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      .+++++||+++.|++++|+++.+.+.
T Consensus       169 ~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          169 DELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CceEEEEccCCCCHHHHHHHHHHHhc
Confidence            78999999999999999999998773

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=6.8e-27  Score=165.42  Aligned_cols=152  Identities=17%  Similarity=0.231  Sum_probs=109.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhccc--
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYYR--   84 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--   84 (210)
                      .++|+++|++|||||||+++|.+..+.. ..++.+.......+.+++  ..+.+|||||...+..      ....+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            5899999999999999999999876532 222323333333444444  5789999999877642      3344454  


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCC
Q 028381           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN  164 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (210)
                      .+|++++|+|+++.+.   ... |...+..    .++|+++|+||+|+...+.+.. ++..++...+++++++||++|.|
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~-~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~  151 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLY-LTLQLME----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMG  151 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHH-HHHHHHH----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBS
T ss_pred             CCCEEEEEecCCchhH---hHH-HHHHHHh----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCC
Confidence            7999999999987543   333 5544443    3689999999999854333322 35677888899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028381          165 VQQCFEELVLKI  176 (210)
Q Consensus       165 i~~~~~~l~~~~  176 (210)
                      ++++|+++.+.+
T Consensus       152 v~~l~~~l~~~~  163 (165)
T 2wji_A          152 IEELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=2e-27  Score=171.52  Aligned_cols=159  Identities=22%  Similarity=0.268  Sum_probs=117.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccchhhcc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG-----------QERFRTLTSSYY   83 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~~   83 (210)
                      +||+++|++|||||||+++|.+..+...+ .++.+.....+...    .+.+||+||           ++.+...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGK-RPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSS-STTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCC-CCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            69999999999999999999988765432 22333333444443    589999999           455666666677


Q ss_pred             cC-ccEEEEEEECCCcccHHHHHHHHHHH--------HhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe-
Q 028381           84 RG-AQGIIMVYDVTRRDTFTNLSDVWAKE--------IDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-  153 (210)
Q Consensus        84 ~~-~d~~i~v~d~~~~~s~~~~~~~~~~~--------~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  153 (210)
                      +. ++++++|+++.+..++..+...|...        +.......++|+++|+||+|+....   .+....++..++.+ 
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~  153 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPL  153 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCG
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhh
Confidence            76 77777777777777887764446542        2222234578999999999997654   55677888888764 


Q ss_pred             ------EEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028381          154 ------FIECSAKTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       154 ------~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                            ++++||++|.|++++|+++.+.+.+.++
T Consensus       154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence                  7999999999999999999999876553

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=3.2e-27  Score=165.95  Aligned_cols=149  Identities=18%  Similarity=0.174  Sum_probs=106.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccc-------cccchhhcccC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------FRTLTSSYYRG   85 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~   85 (210)
                      .||+++|++|+|||||++++.+..+.....  ..........+..++.  .+.+||+||...       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            689999999999999999999887543333  3333334444555554  688999999876       33455667899


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCC
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVN  164 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  164 (210)
                      +|++++|+|+++..+...  ..+...+..    .+.|+++|+||+|+.+..    +++..++ ..++ +++++||+++.|
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~----~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR----KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG  148 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH----HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh----cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence            999999999998755433  213333332    468999999999996542    2333444 5677 799999999999


Q ss_pred             HHHHHHHHHHHH
Q 028381          165 VQQCFEELVLKI  176 (210)
Q Consensus       165 i~~~~~~l~~~~  176 (210)
                      ++++|+++.+.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999998764

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=2.9e-28  Score=187.54  Aligned_cols=168  Identities=19%  Similarity=0.213  Sum_probs=124.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC----CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---chhhcccCccE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEE----LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---LTSSYYRGAQG   88 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~   88 (210)
                      ||+++|+.|||||||++++.++.++.    ..+|.+.++..    ++ ..+.+++|||+|++.+..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999988664433    23466655543    22 347899999999999864   35788999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCC-------ceecHHHHHHHHHH----hCCeEEE
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESE-------RVVTKKEGINFARE----YGCLFIE  156 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~  156 (210)
                      +|+|||+++. .++.. .+|...+... ...+++|++++|||+|+...       +.+..++++++++.    .+++|++
T Consensus        76 ~IlV~Ditd~-~~~~~-~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e  153 (331)
T 3r7w_B           76 LVYVIDSQDE-YINAI-TNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL  153 (331)
T ss_dssp             EEEECCCSSC-TTHHH-HHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred             EEEEEECCch-HHHHH-HHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence            9999999998 33333 3254433321 12467999999999999754       34556666777775    5788999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHcCCCcccccccCcc
Q 028381          157 CSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLK  191 (210)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~  191 (210)
                      |||++ .+|.++|..+++.+..+.+.++.....+.
T Consensus       154 TSAkd-~nV~eAFs~iv~~li~~~~~le~~L~~~~  187 (331)
T 3r7w_B          154 TSIFD-HSIYEAFSRIVQKLIPELSFLENMLDNLI  187 (331)
T ss_dssp             CCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHTGGG
T ss_pred             eccCC-CcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99998 58999999999998877766665544443

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=7.1e-26  Score=163.90  Aligned_cols=161  Identities=19%  Similarity=0.205  Sum_probs=117.6

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG----------QERFRTL   78 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~   78 (210)
                      .+....+||+++|++|||||||+++|++..+....++.+.+........+.   .+.+||+||          .+.+...
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (195)
T 3pqc_A           18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL   94 (195)
T ss_dssp             CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence            344567899999999999999999999988766666766666555444443   478999999          4555555


Q ss_pred             hhhcccCc---cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc--eecHHHHHHHHHHhC-C
Q 028381           79 TSSYYRGA---QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVTKKEGINFAREYG-C  152 (210)
Q Consensus        79 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~-~  152 (210)
                      +..+++.+   |++++|+|+++..+.....  +...+..    .++|+++|+||+|+....  ....+++..++...+ +
T Consensus        95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 3pqc_A           95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY  168 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence            56665554   9999999998875544331  2233332    268999999999996443  233445556665534 6


Q ss_pred             eEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          153 LFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      +++++||+++.|++++|+++.+.+.+
T Consensus       169 ~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          169 TIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             ceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            89999999999999999999998743

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=1.5e-26  Score=174.69  Aligned_cols=157  Identities=18%  Similarity=0.156  Sum_probs=116.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccch------hhcc--
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT------SSYY--   83 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~~--   83 (210)
                      ...++|+++|++|||||||+++|++..+. ....++.++......+......+.+||+||...+...+      ..++  
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            45789999999999999999999987653 11233444444444443344789999999987766532      4444  


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (210)
                      ..+|++++|+|+++.++...    |...+.    ..++|+++|+||+|+...+.+.. +...++..++++++++||++|.
T Consensus        82 ~~~d~ii~V~D~t~~~~~~~----~~~~l~----~~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~  152 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSLY----LLLEIL----EMEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGE  152 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHHH----HHHHHH----TTTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCT
T ss_pred             cCCCEEEEEeCCCchhhHHH----HHHHHH----hcCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCc
Confidence            58999999999998654432    333333    24789999999999854333332 3677888889999999999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 028381          164 NVQQCFEELVLKILD  178 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (210)
                      |++++|+++.+.+..
T Consensus       153 gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          153 GLEELKEKIVEYAQK  167 (258)
T ss_dssp             THHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHhhc
Confidence            999999999998753

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=1.7e-26  Score=191.14  Aligned_cols=166  Identities=22%  Similarity=0.285  Sum_probs=125.3

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEE------E--EECCeEEEEEEEeCCCccccccchh
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKY------V--DVGGKKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~------~--~~~~~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      .....+||+++|.+|||||||+++|++..+...+. +.+.++....      +  ..++..+.+.+||+||++.+...+.
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            35678999999999999999999999988755443 6666555331      1  1233467899999999999999999


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (210)
                      .+++.+|++|+|+|+++.+   .... |+..+..+.  .+.|+++|+||+|+.....+..+++..++...+++++++||+
T Consensus       117 ~~l~~~d~ii~V~D~s~~~---~~~~-~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~  190 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTDS---NKHY-WLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCK  190 (535)
T ss_dssp             HHHHSSEEEEEEECGGGGG---GHHH-HHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-
T ss_pred             HHccCCcEEEEEEeCCCch---hHHH-HHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecC
Confidence            9999999999999998653   3444 777777653  468999999999998777778888888888889999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCC
Q 028381          161 TRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      +|.|++++|.++.+.+.+...
T Consensus       191 ~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          191 NGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             ----CTTHHHHHHHHHTCTTS
T ss_pred             cccCHHHHHHHHHHHHhcccc
Confidence            999999999999999977654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=6.8e-26  Score=163.30  Aligned_cols=157  Identities=17%  Similarity=0.229  Sum_probs=115.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhccc-
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR------TLTSSYYR-   84 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~-   84 (210)
                      ..++|+++|++|||||||+++|.+..+. ...++.........+..++  ..+.+|||||...+.      ..+..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            5689999999999999999999986542 2223333334444444444  678999999987764      23445554 


Q ss_pred             -CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028381           85 -GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        85 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (210)
                       .+|++++|+|.++   ++.... |...+..    .+.|+++|+||+|+.....+. .....++...+++++++||+++.
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~-~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~  154 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLY-LTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM  154 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHH-HHHHHHT----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred             cCCCEEEEEecchh---HHHHHH-HHHHHHh----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence             5899999999885   444444 5555443    568999999999985433332 34677788889999999999999


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 028381          164 NVQQCFEELVLKILDTP  180 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~  180 (210)
                      |++++|+++.+.+.+..
T Consensus       155 ~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          155 GIEELKKAISIAVKDKK  171 (188)
T ss_dssp             SHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            99999999999986654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=2.3e-26  Score=163.85  Aligned_cols=152  Identities=22%  Similarity=0.188  Sum_probs=109.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--CCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS--PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSY   82 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~   82 (210)
                      ..++|+++|++|||||||+++|.+..+....  +.....+....+.+++.  .+.+|||||.......        ....
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            3479999999999999999999987653322  23333344455566654  4789999998653221        1235


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC
Q 028381           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (210)
                      ++.+|++++|+|+++..++... . |...+.... ..++|+++|+||+|+......       ++...+.+++++||+++
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~~-~-~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~SA~~g  150 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDPA-E-IWPEFIARL-PAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTG  150 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSHH-H-HCHHHHHHS-CTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTC
T ss_pred             HHhCCEEEEEEECCCCCCHHHH-H-HHHHHHHhc-ccCCCEEEEEECccCCcchhh-------hhhccCCceEEEeCCCC
Confidence            7899999999999998887633 3 555555432 356899999999998432111       11124678999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028381          163 VNVQQCFEELVLKI  176 (210)
Q Consensus       163 ~~i~~~~~~l~~~~  176 (210)
                      .|++++|+++.+.+
T Consensus       151 ~gv~~l~~~l~~~~  164 (172)
T 2gj8_A          151 EGVDVLRNHLKQSM  164 (172)
T ss_dssp             TTHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998876

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=2.9e-26  Score=174.16  Aligned_cols=154  Identities=19%  Similarity=0.152  Sum_probs=115.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhccc--
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR------TLTSSYYR--   84 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~--   84 (210)
                      +.++|+++|++|||||||+++|++.... ....++.++......+.. ...+.+|||||...+.      ..+..++.  
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            4589999999999999999999987532 223445566555556665 6779999999987765      34455554  


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCC
Q 028381           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN  164 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (210)
                      .+|++++|+|+++.++..   . |...+..    .++|+++|+||+|+.....+. .+...++..++++++++||++|.|
T Consensus        80 ~~d~vi~V~D~t~~e~~~---~-~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~g  150 (272)
T 3b1v_A           80 RADSILNVVDATNLERNL---Y-LTTQLIE----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTG  150 (272)
T ss_dssp             CCSEEEEEEEGGGHHHHH---H-HHHHHHH----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred             CCCEEEEEecCCchHhHH---H-HHHHHHh----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence            699999999999865432   2 4444432    478999999999985433333 345677888899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028381          165 VQQCFEELVLKIL  177 (210)
Q Consensus       165 i~~~~~~l~~~~~  177 (210)
                      ++++|+++.+.+.
T Consensus       151 i~el~~~i~~~~~  163 (272)
T 3b1v_A          151 VDQVVKKAAHTTT  163 (272)
T ss_dssp             HHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=1.6e-25  Score=165.70  Aligned_cols=166  Identities=17%  Similarity=0.105  Sum_probs=114.0

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCcc----------ccc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN-FEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQE----------RFR   76 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~----------~~~   76 (210)
                      .+....++|+|+|++|+|||||+++|++.. ........+.+.......+. .....+.+|||||..          .+.
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            344567999999999999999999999887 33444455555554444544 445679999999943          223


Q ss_pred             cchhhcccC---ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHHH--
Q 028381           77 TLTSSYYRG---AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT--KKEGINFARE--  149 (210)
Q Consensus        77 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~--  149 (210)
                      ..+..+++.   +|++++|+|+++..+.... . |...+..    .++|+++|+||+|+.......  .+........  
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~-~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~  177 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTELDR-R-MIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR  177 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-H-HHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHHHH-H-HHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence            344444444   8899999999986553322 2 4444443    568999999999996543321  1222233333  


Q ss_pred             -----hCCeEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028381          150 -----YGCLFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       150 -----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                           .+.+++++||+++.|++++|++|.+.+....
T Consensus       178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence                 4567999999999999999999999885443

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=2.6e-25  Score=171.34  Aligned_cols=167  Identities=19%  Similarity=0.153  Sum_probs=116.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhcc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYY   83 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~   83 (210)
                      .+..+|+++|++|||||||+|+|++.++......++++.......+......+.+|||||...        +.......+
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            455689999999999999999999998865544333333322222333457899999999765        344555678


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (210)
                      +.+|++++|+|++++.+...  .++...+...  ..++|+++|+||+|+........+.+..+  ....+++++||+++.
T Consensus        85 ~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iSA~~g~  158 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPED--ELVARALKPL--VGKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLSALDER  158 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHHH--HHHHHHHGGG--TTTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECCTTCHH
T ss_pred             hcCCEEEEEEECCCCCChHH--HHHHHHHHhh--cCCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEeCCCCC
Confidence            99999999999998765543  2233445432  24689999999999965433112222222  112469999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCccc
Q 028381          164 NVQQCFEELVLKILDTPSLLA  184 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~~~~  184 (210)
                      |++++++++.+.+.+....++
T Consensus       159 gv~~l~~~l~~~l~~~~~~y~  179 (301)
T 1wf3_A          159 QVAELKADLLALMPEGPFFYP  179 (301)
T ss_dssp             HHHHHHHHHHTTCCBCCCSSC
T ss_pred             CHHHHHHHHHHhcccCCCCCC
Confidence            999999999988766555443

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.92  E-value=1.4e-24  Score=176.43  Aligned_cols=156  Identities=17%  Similarity=0.070  Sum_probs=99.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccch--------hhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTLT--------SSY   82 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~   82 (210)
                      ..++|+++|++|+|||||+|+|++.........++++.  ....+.+++  +.+.+|||||...+...+        ...
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            46899999999999999999999886544443333333  334445554  579999999987655433        346


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCC
Q 028381           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (210)
                      +..+|++++|+|++++.++..... +...+...   .++|+++|+||+|+........   ..+......+++++||+++
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSAktg  382 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTE-IRELKAAH---PAAKFLTVANKLDRAANADALI---RAIADGTGTEVIGISALNG  382 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC---TTSEEEEEEECTTSCTTTHHHH---HHHHHHHTSCEEECBTTTT
T ss_pred             cccCCEEEEEEECCCCcchhhhHH-HHHHHHhc---CCCCEEEEEECcCCCCccchhH---HHHHhcCCCceEEEEECCC
Confidence            789999999999999988865433 44444332   2689999999999976654422   2233332478999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028381          163 VNVQQCFEELVLKIL  177 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~  177 (210)
                      .|++++|++|.+.+.
T Consensus       383 ~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          383 DGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BSHHHHHHHHTHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999986

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=3.5e-25  Score=167.01  Aligned_cols=150  Identities=19%  Similarity=0.218  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc----------chhhcc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT----------LTSSYY   83 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~   83 (210)
                      .+|+++|.+|||||||+++|++..+. ...+....+.....+..++.  .+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999987642 12223333334444444553  789999999876653          445556


Q ss_pred             --cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028381           84 --RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        84 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (210)
                        ..+|++++|+|+++.++...+.    ..+.    ..++|+++|+||+|+........ ....+....+++++++||++
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~----~~l~----~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~  150 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLT----SQLF----ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHK  150 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHH----HHHT----TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGG
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHH----HHHH----HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCC
Confidence              8899999999999865544332    2222    34789999999999854332211 23456777899999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028381          162 RVNVQQCFEELVLK  175 (210)
Q Consensus       162 ~~~i~~~~~~l~~~  175 (210)
                      |.|++++|+++.+.
T Consensus       151 g~gi~el~~~i~~~  164 (256)
T 3iby_A          151 NIGIPALQQSLLHC  164 (256)
T ss_dssp             TBSHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999887

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=4.4e-25  Score=168.13  Aligned_cols=158  Identities=18%  Similarity=0.130  Sum_probs=113.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhcc--
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYY--   83 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--   83 (210)
                      +.++|+++|++|||||||+++|++..+.. ..++.+.+.....+...+  ..+.+||+||...+..      .+..++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            35899999999999999999999876521 222333333344444444  4589999999877665      444555  


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (210)
                      ..+|++++|+|+++.+.   ... |...+..   ...+|+++|+||+|+......... ...+...++++++++||+++.
T Consensus        80 ~~~d~vi~v~D~~~~~~---~~~-~~~~~~~---~~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~  151 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---NLF-LTLELFE---MEVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGE  151 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHH-HHHHHHH---TTCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTB
T ss_pred             cCCcEEEEEecCCcchh---hHH-HHHHHHh---cCCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCC
Confidence            68999999999998532   222 2222222   123899999999998543322222 567778889999999999999


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 028381          164 NVQQCFEELVLKILDTP  180 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~  180 (210)
                      |++++|+++.+.+.+..
T Consensus       152 gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          152 GVEELKRMIALMAEGKV  168 (271)
T ss_dssp             THHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999999886554

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.91  E-value=1e-25  Score=171.75  Aligned_cols=157  Identities=15%  Similarity=0.151  Sum_probs=110.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc----------chhhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT----------LTSSY   82 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~   82 (210)
                      ..++|+++|++|||||||+|+|++..+. ....++.+.......+......+.+|||||...+..          .+..+
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEE-EEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcc-cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            3589999999999999999999987642 222333333333333332335688999999876652          12222


Q ss_pred             --ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028381           83 --YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        83 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (210)
                        ...+|++++|+|+++.++...+    ...+..    .++|+++|+||+|+........ ....+....+++++++||+
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~  151 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYL----TLQLLE----LGIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVST  151 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHH----HHHHHH----HTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCG
T ss_pred             HhhcCCCEEEEEecCCChHHHHHH----HHHHHh----cCCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcC
Confidence              2789999999999986544333    333332    2689999999999854332221 2456777889999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 028381          161 TRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~  179 (210)
                      +|.|++++|+++.+.+.+.
T Consensus       152 ~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          152 RGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             GGHHHHHHHHHHHTCCCCC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999998876544

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=8.9e-25  Score=176.71  Aligned_cols=162  Identities=18%  Similarity=0.126  Sum_probs=114.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceee--eEEEEEEECCeEEEEEEEeCCCcc----------ccccch
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVD--FKVKYVDVGGKKLKLAIWDTAGQE----------RFRTLT   79 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~   79 (210)
                      +..+||+++|++|||||||+++|++..+.......+++  .....+..++.  .+.+|||||+.          .+....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            45699999999999999999999988764333323333  33334455554  48999999973          232222


Q ss_pred             h-hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-H----HhCCe
Q 028381           80 S-SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-R----EYGCL  153 (210)
Q Consensus        80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~----~~~~~  153 (210)
                      . ..++.+|++++|+|++++.+++...  |...+.    ..++|+++|+||+|+.+.+....++..... .    ..+++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~  324 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAH----EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP  324 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHH----HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCC
Confidence            2 3678899999999999998887753  555544    257899999999999765544333332222 2    23678


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028381          154 FIECSAKTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       154 ~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      ++++||++|.|++++|+.+.+.+.+...
T Consensus       325 ~~~~SA~tg~~v~~l~~~i~~~~~~~~~  352 (436)
T 2hjg_A          325 ILFMSALTKKRIHTLMPAIIKASENHSL  352 (436)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EEEEecccCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999998876543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=4.1e-25  Score=162.97  Aligned_cols=148  Identities=18%  Similarity=0.187  Sum_probs=104.4

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC----c
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG----A   86 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~   86 (210)
                      ....++|+++|++|+|||||+++|.+..+.........+.     ..+.....+.+||+||++.+...+..+++.    +
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   83 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV   83 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE-----ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE-----EEEeeCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence            4567999999999999999999999888654221111111     111144678999999999998888888776    8


Q ss_pred             cEEEEEEECC-CcccHHHHHHHHHHHHhhhc---cCCCCcEEEEEeCCCCCCCceec------HHHHHHHHHHhCCeEEE
Q 028381           87 QGIIMVYDVT-RRDTFTNLSDVWAKEIDLYS---TNQDCIKLLVGNKVDKESERVVT------KKEGINFAREYGCLFIE  156 (210)
Q Consensus        87 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~  156 (210)
                      |++++|+|++ ++.++..... |+..+....   ...++|+++|+||+|+.....+.      .+++..++...++++++
T Consensus        84 ~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  162 (218)
T 1nrj_B           84 KGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNE  162 (218)
T ss_dssp             EEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999 8889988887 444443322   24679999999999997665543      45567777777888999


Q ss_pred             EccCCCCC
Q 028381          157 CSAKTRVN  164 (210)
Q Consensus       157 ~Sa~~~~~  164 (210)
                      +||+++.+
T Consensus       163 ~Sa~~~~~  170 (218)
T 1nrj_B          163 VERKINEE  170 (218)
T ss_dssp             --------
T ss_pred             cccccccc
Confidence            99998874

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=1.9e-24  Score=175.66  Aligned_cols=165  Identities=19%  Similarity=0.128  Sum_probs=120.2

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAG----------QERFRTL   78 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~   78 (210)
                      ....++|+++|.+|+|||||+++|++........  ....+.....+..++.  .+.+|||||          ++.+...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            3567999999999999999999999776432223  2222333344555554  789999999          4555444


Q ss_pred             hh-hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-----CC
Q 028381           79 TS-SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-----GC  152 (210)
Q Consensus        79 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~  152 (210)
                      .. .+++.+|++++|+|+++..+.... . |...+..    .++|+++|+||+|+...+....++..+.+...     ++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~~-~-~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  343 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQDK-R-IAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYA  343 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-H-HHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTS
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHHH-H-HHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCC
Confidence            33 367889999999999986654332 2 5554443    56899999999999877666666666666655     57


Q ss_pred             eEEEEccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028381          153 LFIECSAKTRVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      +++++||++|.|++++|.++.+.+.+.....
T Consensus       344 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~  374 (456)
T 4dcu_A          344 PILFMSALTKKRIHTLMPAIIKASENHSLRV  374 (456)
T ss_dssp             CEEECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred             CEEEEcCCCCcCHHHHHHHHHHHHHHhcccC
Confidence            8999999999999999999999886655443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.90  E-value=1.9e-23  Score=161.08  Aligned_cols=165  Identities=19%  Similarity=0.119  Sum_probs=113.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhcc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE---------RFRTLTSSYY   83 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~   83 (210)
                      +..+|+++|++|+|||||+++|++..+......++++.......+......+.+|||||..         .+.......+
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l   86 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI   86 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence            4458999999999999999999988765433333333322222222334678999999986         2334456678


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCC
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTR  162 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  162 (210)
                      +.+|++++|+|+++ -+  .....+...+.    ..+.|+++++||+|+........+.+..+....+. .++++||+++
T Consensus        87 ~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           87 GDVELVIFVVEGTR-WT--PDDEMVLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCEEEEEEEEETTC-CC--HHHHHHHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             hcCCEEEEEEeCCC-CC--HHHHHHHHHHH----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            89999999999977 32  22221222222    35689999999999875222233444555555665 6999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCccc
Q 028381          163 VNVQQCFEELVLKILDTPSLLA  184 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~~~~~  184 (210)
                      .|++++++++.+.+.+....++
T Consensus       160 ~~v~~l~~~i~~~l~~~~~~~~  181 (301)
T 1ega_A          160 LNVDTIAAIVRKHLPEATHHFP  181 (301)
T ss_dssp             TTHHHHHHHHHTTCCBCCCSSC
T ss_pred             CCHHHHHHHHHHhCCcCCCCCC
Confidence            9999999999988766554443

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=4.3e-25  Score=176.67  Aligned_cols=160  Identities=18%  Similarity=0.157  Sum_probs=112.3

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCcee--eeEEEEEEECCeEEEEEEEeCCCccccccc-------h
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGV--DFKVKYVDVGGKKLKLAIWDTAGQERFRTL-------T   79 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~   79 (210)
                      .+....++|+|+|++|+|||||+++|++..+.......+.  ......+.+.+. ..+.+|||||+..+...       +
T Consensus        29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~  107 (423)
T 3qq5_A           29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA  107 (423)
T ss_dssp             ---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence            4556789999999999999999999998887543333333  333444444443 27899999998876544       3


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc
Q 028381           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      ..++..+|++++|+|++...   .... |...+..    .++|+++|+||+|+......  +....+....+++++++||
T Consensus       108 ~~~l~~aD~vllVvD~~~~~---~~~~-~l~~l~~----~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSA  177 (423)
T 3qq5_A          108 RRVFYRADCGILVTDSAPTP---YEDD-VVNLFKE----MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSA  177 (423)
T ss_dssp             HHHHTSCSEEEEECSSSCCH---HHHH-HHHHHHH----TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSS
T ss_pred             HHHHhcCCEEEEEEeCCChH---HHHH-HHHHHHh----cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEEC
Confidence            44788999999999993322   2222 6666654    27899999999999766544  4556666677889999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcC
Q 028381          160 KTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (210)
                      +++.|++++|++|.+.+.+.
T Consensus       178 ktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          178 LQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCTTSTTTHHHHHHHHSCCC
T ss_pred             CCCCCHHHHHHHHHHhhhhh
Confidence            99999999999999998554

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.90  E-value=5.2e-23  Score=162.38  Aligned_cols=161  Identities=22%  Similarity=0.193  Sum_probs=114.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------chhh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---------LTSS   81 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~   81 (210)
                      ...++|+++|++|||||||+++|.+..... ..+..........+...  ...+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            456899999999999999999999876421 11211111222222222  45789999999754221         1123


Q ss_pred             cccCccEEEEEEECCCcc--cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc
Q 028381           82 YYRGAQGIIMVYDVTRRD--TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      +...+|++++|+|+++..  ++..... |+..+....  .+.|+++|+||+|+.....+  +++..++...+++++++||
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA  317 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISA  317 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeC
Confidence            445689999999999876  6666666 666665532  27899999999999755432  4456666777899999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcC
Q 028381          160 KTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ++|.|++++++++.+.+.+.
T Consensus       318 ~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          318 LKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHH
Confidence            99999999999999988554

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.89  E-value=1.4e-23  Score=170.62  Aligned_cols=152  Identities=20%  Similarity=0.184  Sum_probs=111.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCcc-cccc--------chhh
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQE-RFRT--------LTSS   81 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~--------~~~~   81 (210)
                      ..++|+++|.||+|||||+|+|++.+......  ....+.....+.+++  ..+.+|||||.. .+..        ....
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~  319 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQ  319 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence            34899999999999999999999886543333  223333344455555  468999999987 5432        2345


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028381           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (210)
                      .+..+|++++|+|++++.+++...  ++..+      .++|+++|+||+|+...  ...+++..+. ..+.+++++||++
T Consensus       320 ~~~~aD~vl~VvD~s~~~s~~~~~--il~~l------~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAkt  388 (482)
T 1xzp_A          320 EIEKADIVLFVLDASSPLDEEDRK--ILERI------KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALK  388 (482)
T ss_dssp             HHHHCSEEEEEEETTSCCCHHHHH--HHHHH------TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGG
T ss_pred             HhhcccEEEEEecCCCCCCHHHHH--HHHHh------cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCC
Confidence            678999999999999988876542  22222      36899999999999653  3334444432 2346899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028381          162 RVNVQQCFEELVLKIL  177 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~  177 (210)
                      +.|+++++++|.+.+.
T Consensus       389 g~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          389 GEGLEKLEESIYRETQ  404 (482)
T ss_dssp             TCCHHHHHHHHHHHTH
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999999865

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.89  E-value=9.4e-23  Score=163.32  Aligned_cols=166  Identities=16%  Similarity=0.104  Sum_probs=116.6

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-------------------EEEECCeEEEEEEEeCC
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVK-------------------YVDVGGKKLKLAIWDTA   70 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~D~~   70 (210)
                      .....++|+++|++++|||||+++|++............+....                   ..........+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            45667999999999999999999999754432111111111000                   00001233789999999


Q ss_pred             CccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHH
Q 028381           71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAR  148 (210)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~  148 (210)
                      |++.+...+...+..+|++++|+|+++..++..... |+..+...   ...|+++|+||+|+.+....  ..+++..+..
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999876766666 55555432   22589999999999754322  1222333332


Q ss_pred             Hh---CCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          149 EY---GCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       149 ~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ..   +++++++||++|.|+++++++|.+.+...
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence            22   56899999999999999999999877443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=2.2e-23  Score=168.71  Aligned_cols=153  Identities=24%  Similarity=0.280  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCeEEEEEEEeCCCccc---------cccchhhcc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQER---------FRTLTSSYY   83 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~   83 (210)
                      .+|+++|.||||||||+|+|++.....+..+++.+..  ...+..++.  .+.+|||||...         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            4799999999999999999998876544444554433  334444554  578999999654         233456678


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHH-HHHHHHhCC-eEEEEccCC
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEG-INFAREYGC-LFIECSAKT  161 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~  161 (210)
                      +.+|++++|+|+.++.+.... . +...+..    .++|+++|+||+|+...  . ..+. .++. ..++ +++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~-~-i~~~l~~----~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDE-S-LADFLRK----STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHH-H-HHHHHHH----HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHH-H-HHHHHHH----cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            999999999999987665432 1 2222322    36899999999998422  1 1222 3333 4666 689999999


Q ss_pred             CCCHHHHHHHHHHHHHcC
Q 028381          162 RVNVQQCFEELVLKILDT  179 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~  179 (210)
                      |.|++++++++.+.+.+.
T Consensus       150 g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhcccc
Confidence            999999999999988754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=5.1e-24  Score=172.28  Aligned_cols=154  Identities=18%  Similarity=0.180  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhcccCc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------RFRTLTSSYYRGA   86 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~~   86 (210)
                      .+|+++|.+|||||||+++|.+..+..+..+++.+.......+......+.+|||||..        .+...+..+++.+
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a   83 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA   83 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            68999999999999999999998877666777877766666666666789999999975        4555667788999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEccCCCCCH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNV  165 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  165 (210)
                      |++++|+|+.++.+.... . +...+.    ..++|+++|+||+|+......    ..++. ..+. +++++||++|.|+
T Consensus        84 d~il~vvD~~~~~~~~d~-~-~~~~l~----~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           84 DVIIFMVNGREGVTAADE-E-VAKILY----RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             SEEEEEEETTTCSCHHHH-H-HHHHHT----TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTH
T ss_pred             CEEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCCh
Confidence            999999999988776542 1 333333    357899999999998643211    11122 3455 6899999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028381          166 QQCFEELVLKILDT  179 (210)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (210)
                      .++++++.+.+.+.
T Consensus       153 ~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          153 GDLLDAVAEHFKNI  166 (436)
T ss_dssp             HHHHHHHHHTGGGC
T ss_pred             HHHHHHHHHhcCcc
Confidence            99999999988643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.89  E-value=5.2e-23  Score=160.72  Aligned_cols=159  Identities=20%  Similarity=0.244  Sum_probs=114.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhcc---c
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQER----FRTLTSSYY---R   84 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~---~   84 (210)
                      .+|+|+|.++||||||+++|++.... ..++  |...+..  .+.+++ ...+.+||+||...    ...+...++   .
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~  235 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE  235 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence            36889999999999999999977542 2222  2222222  233333 24689999999533    233434444   4


Q ss_pred             CccEEEEEEECCC---cccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CeEEEEc
Q 028381           85 GAQGIIMVYDVTR---RDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECS  158 (210)
Q Consensus        85 ~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S  158 (210)
                      .+|++|+|+|+++   ..++..+.. |...+..+.. ..++|+++|+||+|+....    +....+...+.  .+++++|
T Consensus       236 ~~d~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iS  310 (342)
T 1lnz_A          236 RTRVIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPIS  310 (342)
T ss_dssp             HCCEEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCS
T ss_pred             hccEEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEE
Confidence            5999999999998   778888876 7777776532 2578999999999986432    34455666655  6799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCC
Q 028381          159 AKTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      |+++.|+++++.+|.+.+.+.+.
T Consensus       311 A~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          311 AVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             SCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             CCCCcCHHHHHHHHHHHHhhCcc
Confidence            99999999999999999866543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.89  E-value=1.4e-22  Score=151.54  Aligned_cols=168  Identities=12%  Similarity=0.134  Sum_probs=106.5

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceee--eEEEEEEECCeEEEEEEEeCCCcc-----------
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVD--FKVKYVDVGGKKLKLAIWDTAGQE-----------   73 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~-----------   73 (210)
                      +.+....+||+++|++|||||||+++|++..+.... +..+.+  .....+..++  ..+.+|||||..           
T Consensus        23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~  100 (239)
T 3lxx_A           23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSK  100 (239)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHH
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHH
Confidence            444567899999999999999999999988774332 222233  3333344444  468999999943           


Q ss_pred             ccccchhhcccCccEEEEEEECCCcccHHH-HHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec------HHHHHHH
Q 028381           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTN-LSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT------KKEGINF  146 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~  146 (210)
                      .+...+...++.+|++++|+|+++...... ....+...+..   ....|+++|+||+|+.....+.      .+.+..+
T Consensus       101 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~---~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l  177 (239)
T 3lxx_A          101 EIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE---RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL  177 (239)
T ss_dssp             HHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH---HHGGGEEEEEECGGGC------------CHHHHHH
T ss_pred             HHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh---hccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence            333444455678899999999986544221 11112222221   2346999999999986544333      2356778


Q ss_pred             HHHhCCeEEEEccCCC-----CCHHHHHHHHHHHHHcCC
Q 028381          147 AREYGCLFIECSAKTR-----VNVQQCFEELVLKILDTP  180 (210)
Q Consensus       147 ~~~~~~~~~~~Sa~~~-----~~i~~~~~~l~~~~~~~~  180 (210)
                      ....+..++.+++..+     .++.++|..+.+.+.++.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~  216 (239)
T 3lxx_A          178 MDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK  216 (239)
T ss_dssp             HHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence            8888888888887754     689999999988886643

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=2.8e-22  Score=166.53  Aligned_cols=159  Identities=23%  Similarity=0.282  Sum_probs=112.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC--CC---------CC---CCCceeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDN--FE---------EL---SPTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQE   73 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~--~~---------~~---~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~   73 (210)
                      +..||+|+|++++|||||+++|+...  ..         ..   ....+.++......+     ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46799999999999999999998532  11         00   012233333222222     5567899999999999


Q ss_pred             ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCe
Q 028381           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL  153 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      .+...+...++.+|++|+|+|+++..+...... |.....     .++|+++|+||+|+....  ..+...++....+..
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~  154 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAME-----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGID  154 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCC
Confidence            999988899999999999999999888777666 554432     468999999999997653  223345555556664


Q ss_pred             ---EEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          154 ---FIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       154 ---~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                         ++++||++|.|++++++++.+.+...
T Consensus       155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          155 ATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence               89999999999999999999987543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=1.3e-21  Score=156.93  Aligned_cols=164  Identities=16%  Similarity=0.110  Sum_probs=105.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCC---CCCC-C--CceeeeEEEEEEE-------------C--C----eEEEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF---EELS-P--TIGVDFKVKYVDV-------------G--G----KKLKLAI   66 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~---~~~~-~--~~~~~~~~~~~~~-------------~--~----~~~~~~l   66 (210)
                      ...++|+++|++++|||||+++|++...   .... +  |....+....+..             +  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            4579999999999999999999985432   2111 1  3333332222211             1  1    1378999


Q ss_pred             EeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHH
Q 028381           67 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGI  144 (210)
Q Consensus        67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~  144 (210)
                      ||+||++.+...+...+..+|++|+|+|++++........ .+..+..   ....|+++++||+|+.....  ...+++.
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~---l~~~~iivv~NK~Dl~~~~~~~~~~~~i~  161 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE-HLMALEI---LGIDKIIIVQNKIDLVDEKQAEENYEQIK  161 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH-HHHHHHH---TTCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH-HHHHHHH---cCCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence            9999999988877777888999999999997542222222 2222222   12247999999999975443  2345566


Q ss_pred             HHHHH---hCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          145 NFARE---YGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       145 ~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      .++..   .+++++++||+++.|+++++++|.+.+...
T Consensus       162 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          162 EFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             HHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             HHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            66654   367899999999999999999999877543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.88  E-value=3.5e-22  Score=156.54  Aligned_cols=118  Identities=19%  Similarity=0.173  Sum_probs=96.8

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028381           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  130 (210)
                      .+.+.+||++|++.+...|..++++++++|+|+|+++          ..++..... |+..+.......++|++|++||+
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEECc
Confidence            5789999999999999999999999999999999999          456888777 55555443334679999999999


Q ss_pred             CCCCCc---------------eecHHHHHHHHH-----------HhCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          131 DKESER---------------VVTKKEGINFAR-----------EYGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       131 Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      |+....               ....+++..++.           ..++.+++|||+++.||.++|+++.+.+++.
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence            984222               256777888876           3467799999999999999999999998754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=1.1e-22  Score=153.85  Aligned_cols=165  Identities=13%  Similarity=0.116  Sum_probs=105.1

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CC--ceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PT--IGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------   78 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------   78 (210)
                      +....++|+|+|++|||||||+++|++....... ..  .........+..++  ..+.+|||||.......        
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence            3456799999999999999999999987743322 22  22222223333333  56899999997654321        


Q ss_pred             ---hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEe-CCCCCCCceecH-------HHHHHH
Q 028381           79 ---TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGN-KVDKESERVVTK-------KEGINF  146 (210)
Q Consensus        79 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~  146 (210)
                         ....++.+|++++|+|+++.....   ..+...+... ......|.++|+| |+|+.... +..       .++..+
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~  171 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQD---QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKL  171 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHHH---HHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHH
Confidence               223578899999999998622221   1122233222 1122356666666 99997432 222       234445


Q ss_pred             HHHhCCe---E--EEEccCCCCCHHHHHHHHHHHHHcCC
Q 028381          147 AREYGCL---F--IECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       147 ~~~~~~~---~--~~~Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ....+..   +  +++||+++.|++++|.+|.+.+....
T Consensus       172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            5555543   2  78999999999999999999998765

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.88  E-value=7.4e-22  Score=163.76  Aligned_cols=161  Identities=21%  Similarity=0.275  Sum_probs=115.0

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCC--CCC---------CC---CCceeeeE----EEEEEE-CCeEEEEEEEeCCC
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN--FEE---------LS---PTIGVDFK----VKYVDV-GGKKLKLAIWDTAG   71 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~--~~~---------~~---~~~~~~~~----~~~~~~-~~~~~~~~l~D~~g   71 (210)
                      .+...+|+++|+.++|||||+++|+...  +..         ..   ...+.++.    ...+.. ++..+.+++|||||
T Consensus         3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG   82 (600)
T 2ywe_A            3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG   82 (600)
T ss_dssp             GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence            3567899999999999999999997521  110         00   01222221    122221 55678999999999


Q ss_pred             ccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC
Q 028381           72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG  151 (210)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  151 (210)
                      +..+...+...++.+|++|+|+|+++..+.+.... |.....     .++|+++|+||+|+....  ..+...++....+
T Consensus        83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~~-----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg  154 (600)
T 2ywe_A           83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAVE-----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLG  154 (600)
T ss_dssp             SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSC
T ss_pred             cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-----CCCCEEEEEeccCccccC--HHHHHHHHHHhhC
Confidence            99999888888999999999999999988877766 544332     468999999999997543  2223445555556


Q ss_pred             C---eEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          152 C---LFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       152 ~---~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      .   +++++||++|.|++++|+++.+.+...
T Consensus       155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          155 LDPEEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             CCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             CCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence            5   389999999999999999999988543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.88  E-value=4.3e-22  Score=162.45  Aligned_cols=161  Identities=15%  Similarity=0.086  Sum_probs=111.6

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCC----CC--CCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccchh
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN----FE--ELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~----~~--~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      ......++|+++|++++|||||+++|++..    ..  ......+.+.  ....+.+++  ..+.+||+||++.+...+.
T Consensus        14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~   91 (482)
T 1wb1_A           14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVV   91 (482)
T ss_dssp             CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHH
T ss_pred             hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHH
Confidence            334567999999999999999999999776    11  1111112221  112233333  6799999999999888888


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHHh----CCeE
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAREY----GCLF  154 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~  154 (210)
                      ..+..+|++++|+|+++...-+...  ++..+..    .++|+++|+||+|+.+....  ..+++..++...    +.++
T Consensus        92 ~~~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           92 SAADIIDLALIVVDAKEGPKTQTGE--HMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HHTTSCCEEEEEEETTTCSCHHHHH--HHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHHhhCCEEEEEEecCCCccHHHHH--HHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            8899999999999999853322222  2222222    35788999999999753221  234455555555    5689


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHH
Q 028381          155 IECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       155 ~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      +++||++|.|+++++++|.+.+.
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999999875

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.87  E-value=4.6e-23  Score=166.87  Aligned_cols=155  Identities=17%  Similarity=0.178  Sum_probs=103.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccccccch--------hh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT--------SS   81 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~   81 (210)
                      ...++|+++|++|+|||||+|+|++..+.....  ....++....+.+++  ..+.+|||||...+...+        ..
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence            356899999999999999999999876543333  333333333445555  467999999976544322        33


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC
Q 028381           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (210)
                      .+..+|++++|+|++++.+.... . |+..+.      ..|+++|+||+|+.......  ....+.  .+.+++++||++
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~~-~-i~~~l~------~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAkt  367 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGDQ-E-IYEQVK------HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQ  367 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHHH-H-HHHHHT------TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTT
T ss_pred             hhhcCCEEEEEeccCCCCCHHHH-H-HHHhcc------CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCC
Confidence            57889999999999998776552 2 444443      26999999999997554332  111111  356799999999


Q ss_pred             CCCHHHHHHHHHHHHHcCC
Q 028381          162 RVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~~  180 (210)
                      +.|+++++++|.+.+....
T Consensus       368 g~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          368 KQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             TBSHHHHHHHHHHHHTTSS
T ss_pred             CCCHHHHHHHHHHHHhccC
Confidence            9999999999999886543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.87  E-value=1.8e-21  Score=157.19  Aligned_cols=156  Identities=17%  Similarity=0.176  Sum_probs=107.0

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------------------CCCCceeeeEEEEEEECC
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE------------------------------LSPTIGVDFKVKYVDVGG   59 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~   59 (210)
                      +....++|+++|++++|||||+++|++..-..                              .....+.+.......+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            44567999999999999999999996432100                              001234455444445555


Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCccc---HH---HHHHHHHHHHhhhccCCCCc-EEEEEeCCCC
Q 028381           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLSDVWAKEIDLYSTNQDCI-KLLVGNKVDK  132 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl  132 (210)
                      ....+.+|||||++.+...+...++.+|++|+|+|+++...   |+   .... .+....    ..++| +++|+||+|+
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~----~~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAK----TAGVKHLIVLINKMDD  167 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHH----HcCCCeEEEEeecCCC
Confidence            66789999999999999888888999999999999998642   11   1111 111222    23566 8999999998


Q ss_pred             CCCc------eecHHHHHHHHHHhC------CeEEEEccCCCCCHHHHHH
Q 028381          133 ESER------VVTKKEGINFAREYG------CLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus       133 ~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  170 (210)
                      ....      ....++...++...+      ++++++||++|.|++++++
T Consensus       168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            5321      112233444554444      4799999999999999665

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=1.6e-21  Score=156.51  Aligned_cols=166  Identities=16%  Similarity=0.112  Sum_probs=112.1

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCC---CCCC-C--CceeeeEEEEEEE-------------C--C----eEEE
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF---EELS-P--TIGVDFKVKYVDV-------------G--G----KKLK   63 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~---~~~~-~--~~~~~~~~~~~~~-------------~--~----~~~~   63 (210)
                      ......++|+++|++++|||||+++|++...   .... .  |....+....+..             +  +    ....
T Consensus         5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   84 (410)
T 1kk1_A            5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR   84 (410)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred             ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence            3456779999999999999999999985432   1111 1  3332332222211             0  1    1378


Q ss_pred             EEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHH
Q 028381           64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKK  141 (210)
Q Consensus        64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~  141 (210)
                      +.+||+||++.+.......+..+|++|+|+|+++......... .+..+...   ...|+++|+||+|+.....  ...+
T Consensus        85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQII---GQKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHH-HHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHH
Confidence            9999999999888877777888999999999997542222222 11222221   1257899999999975432  2234


Q ss_pred             HHHHHHHH---hCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          142 EGINFARE---YGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       142 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ++..++..   .+++++++||+++.|+++++++|.+.+..
T Consensus       161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            45555543   36789999999999999999999987654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.87  E-value=1.9e-22  Score=164.95  Aligned_cols=152  Identities=14%  Similarity=0.081  Sum_probs=101.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCC--C----------------------------CCCCCceeeeEEEEEEECCeE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF--E----------------------------ELSPTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~   61 (210)
                      ...+||+++|++++|||||+++|++...  .                            ......+.++......++...
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            3569999999999999999999975411  0                            001123444444444555566


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHH------HHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTN------LSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      ..+.||||||++.+...+...++.+|++|+|+|++++.++..      ... .......   ....|++||+||+|+.+.
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e-~~~~~~~---~~~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASS---LGIHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHH-HHHHHHH---TTCCCEEEEEECGGGGTT
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHH-HHHHHHH---cCCCcEEEEEECcCcccc
Confidence            789999999999999999999999999999999998754321      111 2222221   122469999999999764


Q ss_pred             ceecHHH----HHHHHHHh-----CCeEEEEccCCCCCHHH
Q 028381          136 RVVTKKE----GINFAREY-----GCLFIECSAKTRVNVQQ  167 (210)
Q Consensus       136 ~~~~~~~----~~~~~~~~-----~~~~~~~Sa~~~~~i~~  167 (210)
                      .....++    +..+....     +++++++||++|.|+++
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            3333333    33333333     45799999999999875

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.87  E-value=1.2e-21  Score=151.53  Aligned_cols=120  Identities=16%  Similarity=0.138  Sum_probs=95.8

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEECC----------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028381           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (210)
                      ..+.+.+||++|++.++..|..++++++++|+|+|++          +..++..... |...+.......++|+++++||
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK  243 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNK  243 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEEC
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEEC
Confidence            3478999999999999999999999999999999665          5667777777 4444443344467999999999


Q ss_pred             CCCCCCc----------------eecHHHHHHHHH----------HhCCeEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028381          130 VDKESER----------------VVTKKEGINFAR----------EYGCLFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       130 ~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      +|+...+                ..+.+++..++.          ..++.+++|||+++.||+.+|..+.+.+++..
T Consensus       244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            9985332                356777777743          34567899999999999999999999998754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=6.7e-22  Score=160.03  Aligned_cols=162  Identities=22%  Similarity=0.201  Sum_probs=109.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceee--eEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVD--FKVKYVDVGGKKLKLAIWDTAGQERFRTL-----------   78 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------   78 (210)
                      ...++|+++|++|||||||+++|++.......+.++++  .....+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            35699999999999999999999988753333333333  22344555665  5789999997432211           


Q ss_pred             -hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-HHH----HhCC
Q 028381           79 -TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-FAR----EYGC  152 (210)
Q Consensus        79 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~----~~~~  152 (210)
                       ....++.+|++++|+|+++..+.....  +...+.    ..++|+++|+||+|+.+.+....++... +..    ..++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  329 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQR--MAGLME----RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS  329 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCC
Confidence             123467789999999999877765431  223232    3568999999999997654433333222 222    2357


Q ss_pred             eEEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028381          153 LFIECSAKTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      +++++||++|.|++++|+.+.+.+.+...
T Consensus       330 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  358 (439)
T 1mky_A          330 PLIFTSADKGWNIDRMIDAMNLAYASYTT  358 (439)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhhcc
Confidence            89999999999999999999988766543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.86  E-value=1.9e-22  Score=163.98  Aligned_cols=160  Identities=17%  Similarity=0.161  Sum_probs=105.5

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC--------ccccccch
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG--------QERFRTLT   79 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~   79 (210)
                      +.......+|+++|.+|||||||+++|++..+.....+++.+.......+......+.+|||||        ++.+...+
T Consensus        17 ~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~   96 (456)
T 4dcu_A           17 RGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA   96 (456)
T ss_dssp             ------CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred             ChhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence            3444556899999999999999999999988776666788887777777777777899999999        55666677


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-eEEEEc
Q 028381           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECS  158 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  158 (210)
                      ..+++.+|++|+|+|..+..+...  ..+...+.    ..++|+++|+||+|+.....    ...++ ...+. .++++|
T Consensus        97 ~~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~----~~~~pvilV~NK~D~~~~~~----~~~e~-~~lg~~~~~~iS  165 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGVTAAD--EEVAKILY----RTKKPVVLAVNKLDNTEMRA----NIYDF-YSLGFGEPYPIS  165 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCSCHHH--HHHHHHHT----TCCSCEEEEEECC-------------CCS-GGGSSSSEEECC
T ss_pred             HhhHhhCCEEEEEEeCCCCCChHH--HHHHHHHH----HcCCCEEEEEECccchhhhh----hHHHH-HHcCCCceEEee
Confidence            778899999999999887554433  21333333    36789999999999853321    11111 12333 478999


Q ss_pred             cCCCCCHHHHHHHHHHHHHc
Q 028381          159 AKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~  178 (210)
                      |++|.|+.++++++.+.+.+
T Consensus       166 A~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          166 GTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             TTTCTTHHHHHHHHHTTGGG
T ss_pred             cccccchHHHHHHHHhhccc
Confidence            99999999999999887654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=2.3e-21  Score=156.60  Aligned_cols=152  Identities=22%  Similarity=0.201  Sum_probs=104.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCC---CCC---------C-CC-------------------ceeeeEEEEEEECC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF---EEL---------S-PT-------------------IGVDFKVKYVDVGG   59 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~---~~~---------~-~~-------------------~~~~~~~~~~~~~~   59 (210)
                      ...+||+++|++++|||||+++|++...   ...         . .+                   .+.+.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4669999999999999999999986541   110         0 01                   12222222223334


Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCC-cEEEEEeCCCCCCCce-
Q 028381           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC-IKLLVGNKVDKESERV-  137 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~-  137 (210)
                      ....+.+|||||++.+...+...+..+|++|+|+|+++....+.. . ++..+..    .+. |+++|+||+|+..... 
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~-~-~l~~~~~----~~~~~iIvviNK~Dl~~~~~~  175 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-R-HSYIASL----LGIKHIVVAINKMDLNGFDER  175 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-H-HHHHHHH----TTCCEEEEEEECTTTTTSCHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-H-HHHHHHH----cCCCeEEEEEEcCcCCcccHH
Confidence            456799999999999988888889999999999999987643332 2 3333332    233 6899999999975321 


Q ss_pred             -e--cHHHHHHHHHHhC-----CeEEEEccCCCCCHHHHH
Q 028381          138 -V--TKKEGINFAREYG-----CLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       138 -~--~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  169 (210)
                       .  ..++...++...+     ++++++||++|.|+++++
T Consensus       176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence             1  2345566667777     679999999999998853

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=7.8e-22  Score=150.36  Aligned_cols=160  Identities=18%  Similarity=0.226  Sum_probs=93.3

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-C--------CCCceeeeEEEEEEECCeEEEEEEEeCCCccc-------
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-L--------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------   74 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------   74 (210)
                      ....++|+++|.+|+|||||+|+|++..... .        .++.+.+.....+..++..+.+.+|||||...       
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            3467999999999999999999988765432 2        22444444444454455667999999999632       


Q ss_pred             cccch-------hhcc-------------cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           75 FRTLT-------SSYY-------------RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        75 ~~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      +..+.       ..++             ..+|+++++++.+.......-.. ++..+..     ++|+++|+||+|+..
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~-~l~~l~~-----~~pvi~V~nK~D~~~  158 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIE-FMKRLHE-----KVNIIPLIAKADTLT  158 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHH-HHHHHTT-----TSCEEEEESSGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHH-HHHHHhc-----cCCEEEEEeccCCCC
Confidence            11111       1111             23789999998776332222222 4444432     789999999999864


Q ss_pred             Cceec--HHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          135 ERVVT--KKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       135 ~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      .....  .+.+.......+++++++|++++.|+++++.+|.+.+
T Consensus       159 ~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          159 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            43322  2344555667789999999999999999999988754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.86  E-value=2.8e-22  Score=158.17  Aligned_cols=164  Identities=20%  Similarity=0.271  Sum_probs=92.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCC---------CCceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELS---------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-------ER   74 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~   74 (210)
                      ...++|+|+|++|+|||||+++|++.... ..+         ++.+.......+..++..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            45789999999999999999998765432 111         23333333333344566778999999998       55


Q ss_pred             cccchh-------hcccCc-------------cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           75 FRTLTS-------SYYRGA-------------QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        75 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      +..++.       .+++.+             ++++++++.+ ..++..+...|+..+     ..++|+|+|+||+|+..
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~  188 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT  188 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCC
Confidence            555554       333332             3455555432 344555543344433     35789999999999976


Q ss_pred             CceecH--HHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028381          135 ERVVTK--KEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       135 ~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      .+.+..  +++..++...+++++++||+++.+ ++.|.++.+.+.+..+.
T Consensus       189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~  237 (361)
T 2qag_A          189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF  237 (361)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence            554443  466677777789999999999999 88999999988776554

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.85  E-value=7.7e-21  Score=148.93  Aligned_cols=118  Identities=13%  Similarity=0.136  Sum_probs=91.3

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEECC----------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028381           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (210)
                      ..+.+.+||++|++.+...|..++++++++|+|||++          +..+++.... |...+.......++|+++|+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence            5789999999999999999999999999999999998          7788988887 5555544333467999999999


Q ss_pred             CCCCCCce---------------------ecHHHHHHHHHH----------------hCCeEEEEccCCCCCHHHHHHHH
Q 028381          130 VDKESERV---------------------VTKKEGINFARE----------------YGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus       130 ~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      +|+...+.                     ...+++..++..                ..+.+++|||+++.||+++|+++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            99842211                     124566666443                12346899999999999999999


Q ss_pred             HHHHHc
Q 028381          173 VLKILD  178 (210)
Q Consensus       173 ~~~~~~  178 (210)
                      .+.+++
T Consensus       340 ~~~I~~  345 (354)
T 2xtz_A          340 DETLRR  345 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=6.9e-22  Score=162.45  Aligned_cols=121  Identities=14%  Similarity=0.140  Sum_probs=86.3

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCC------------------CCCC---CCceeeeEEEEEEECCeEEEEEEE
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF------------------EELS---PTIGVDFKVKYVDVGGKKLKLAIW   67 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~l~   67 (210)
                      .+.....+|+|+|++|+|||||+++|+....                  ....   ...+.++......+....+.++||
T Consensus         8 ~~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~li   87 (528)
T 3tr5_A            8 KQTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLL   87 (528)
T ss_dssp             HHHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEE
T ss_pred             hhhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEE
Confidence            3456778999999999999999999962110                  0000   001222222223333345789999


Q ss_pred             eCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           68 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      ||||+..+...+...++.+|++|+|+|+++..+...... |.. +.    ..++|+++|+||+|+...
T Consensus        88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~-~~~-~~----~~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL-MEV-CR----LRHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HHH-HH----TTTCCEEEEEECTTSCCS
T ss_pred             ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HH----HcCCCEEEEEeCCCCccc
Confidence            999999999999999999999999999999877766544 432 22    346899999999999643

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.85  E-value=3.8e-21  Score=151.96  Aligned_cols=146  Identities=8%  Similarity=0.029  Sum_probs=106.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      +|+++|++++|||||+++|+         ..+.+.......+......+.+|||||++.+.......++.+|++|+|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            99999999999999999998         12232222333444455679999999999988777778899999999999 


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEe-CCCCCCCceecH--HHHHHHHHHh---CCeEEE--EccCC---CC
Q 028381           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGN-KVDKESERVVTK--KEGINFAREY---GCLFIE--CSAKT---RV  163 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~  163 (210)
                      +. ..+..... +...+..    .++|. ++++| |+|+ +.+....  +++..++...   .+++++  +||++   +.
T Consensus        93 ~~-g~~~qt~e-~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           93 PQ-GLDAHTGE-CIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             TT-CCCHHHHH-HHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             CC-CCcHHHHH-HHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence            54 34444444 4444432    34676 88888 9998 4432222  4455555443   368999  99999   99


Q ss_pred             CHHHHHHHHHHHHHc
Q 028381          164 NVQQCFEELVLKILD  178 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (210)
                      |++++++.|.+.+..
T Consensus       166 gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          166 GVDELKARINEVAEK  180 (370)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhccc
Confidence            999999999988753

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.85  E-value=5.1e-22  Score=160.42  Aligned_cols=157  Identities=20%  Similarity=0.232  Sum_probs=104.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCCC----------------------------CCceeeeEEEEEEECCeE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEELS----------------------------PTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~--~~~~~~----------------------------~~~~~~~~~~~~~~~~~~   61 (210)
                      ...+||+++|++++|||||+++|++.  .+....                            ...+.+.......++...
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            35689999999999999999999864  222100                            012223332223344455


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhh---ccCCC-CcEEEEEeCCCCCCCc-
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY---STNQD-CIKLLVGNKVDKESER-  136 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~-~p~ivv~nK~Dl~~~~-  136 (210)
                      ..+.+|||||++.+...+...++.+|++|+|+|+++ .+|+.... |......+   ....+ .|+++++||+|+.... 
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~-~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMS-VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHS-TTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccccc-cchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence            789999999999999888889999999999999998 56664332 11111110   11123 3689999999997521 


Q ss_pred             -----eecHHHHHHHHHHhC-----CeEEEEccCCCCCHHHHHH
Q 028381          137 -----VVTKKEGINFAREYG-----CLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus       137 -----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  170 (210)
                           ....+++..++...+     ++++++||++|.|+.+++.
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                 122455667777665     6799999999999986654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=3.6e-21  Score=153.79  Aligned_cols=159  Identities=17%  Similarity=0.131  Sum_probs=112.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC-------CCCCC--------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD-------NFEEL--------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~-------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      ..+||+++|++++|||||+++|++.       .+...        ....+.+.......+......+.+|||||++.+..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            3589999999999999999999863       11110        00233344433344544556789999999999888


Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHHHhC--
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VTKKEGINFAREYG--  151 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~--  151 (210)
                      .+...++.+|++|+|+|+++....+.... | ..+..    .++| +++++||+|+.....   ...+++..++...+  
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  155 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREH-L-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK  155 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHH-H-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHH-H-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            88888999999999999998765443332 3 33332    3678 689999999974221   12345666776665  


Q ss_pred             ---CeEEEEccCCCCC----------HHHHHHHHHHHHH
Q 028381          152 ---CLFIECSAKTRVN----------VQQCFEELVLKIL  177 (210)
Q Consensus       152 ---~~~~~~Sa~~~~~----------i~~~~~~l~~~~~  177 (210)
                         ++++++||+++.|          +.++++.+.+.+.
T Consensus       156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence               5899999999764          8888888877664

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.85  E-value=2.4e-21  Score=155.34  Aligned_cols=161  Identities=15%  Similarity=0.119  Sum_probs=113.4

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcC--------CCCCCC--------CCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD--------NFEELS--------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      ....++|+++|++++|||||+++|++.        .+....        ...+.++......++.....+.+|||||++.
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            456799999999999999999999863        221110        0233444444444555557789999999999


Q ss_pred             cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHHHh
Q 028381           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VTKKEGINFAREY  150 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~  150 (210)
                      +...+...++.+|++|+|+|+++...... .. |+..+..    .++| +++++||+|+.....   ...+++..++...
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~-~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~  161 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQT-RE-HILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY  161 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HH-HHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HH-HHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence            98888888999999999999998765433 33 4444432    3578 889999999974221   1223456666666


Q ss_pred             C-----CeEEEEccCCCCC------------------HHHHHHHHHHHHH
Q 028381          151 G-----CLFIECSAKTRVN------------------VQQCFEELVLKIL  177 (210)
Q Consensus       151 ~-----~~~~~~Sa~~~~~------------------i~~~~~~l~~~~~  177 (210)
                      +     ++++++||+++.|                  +.++++.+.+.+.
T Consensus       162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            5     6799999999987                  6677777666553

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.85  E-value=3.6e-20  Score=145.95  Aligned_cols=163  Identities=19%  Similarity=0.110  Sum_probs=106.4

Q ss_pred             eeE-EEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccc---------cccchhhc
Q 028381           14 LFK-LLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER---------FRTLTSSY   82 (210)
Q Consensus        14 ~~k-i~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~   82 (210)
                      .++ |+++|++|+|||||+++|++..+.. ..+....+.....+.+++  ..+.+|||+|...         +... ...
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHH
Confidence            345 9999999999999999999876521 112222223445566666  4678999999622         1222 224


Q ss_pred             ccCccEEEEEEECCCcc--cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHh---CCeEEE
Q 028381           83 YRGAQGIIMVYDVTRRD--TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGINFAREY---GCLFIE  156 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~  156 (210)
                      +..+|++++|+|++++.  ....... |...+... ...+.|+++|+||+|+...... ..+.+..++...   +.++++
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~  332 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQS-SFEILREI-GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP  332 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHH-HHHHHHHH-TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHH-HHHHHHHh-CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            67899999999999876  4444433 55555442 2356899999999998654311 112233344444   236899


Q ss_pred             EccCCCCCHHHHHHHHHHHHHcCCC
Q 028381          157 CSAKTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      +||+++.|+++++++|.+.+.....
T Consensus       333 ~SA~~g~gi~~L~~~I~~~l~~~~~  357 (364)
T 2qtf_A          333 ISALKRTNLELLRDKIYQLATQLSL  357 (364)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             EECCCCcCHHHHHHHHHHHhcccCC
Confidence            9999999999999999998765543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.84  E-value=4.1e-21  Score=150.96  Aligned_cols=118  Identities=15%  Similarity=0.134  Sum_probs=87.8

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028381           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  130 (210)
                      .+.+.+||++|++.+...|..++++++++|+|+|+++          ..++..... |...+.......++|+|+++||+
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv~NK~  278 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILFLNKT  278 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEEEECh
Confidence            4789999999999999999999999999999999999          778888887 44444433334679999999999


Q ss_pred             CCCCCc----------------eecHHHHHHHHH-----------HhCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          131 DKESER----------------VVTKKEGINFAR-----------EYGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       131 Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      |+....                ....+++..++.           ..++.+++|||+++.||+++|+++.+.+++.
T Consensus       279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~  354 (362)
T 1zcb_A          279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  354 (362)
T ss_dssp             HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence            984221                145667776652           3356799999999999999999999988653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.84  E-value=7.4e-23  Score=167.75  Aligned_cols=158  Identities=18%  Similarity=0.173  Sum_probs=110.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +..+|+++|++++|||||+++|.+..+.... ++.+.++....+..+ ....+.||||||++.+...+...++.+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            4678999999999999999999876543222 222222222222221 22368999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-HHHHHHH---HHHh--CCeEEEEccCCCCCH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-KKEGINF---AREY--GCLFIECSAKTRVNV  165 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~i  165 (210)
                      |+|+++......... |. .+.    ..++|+++++||+|++...... ..+...+   +..+  .++++++||++|.|+
T Consensus        82 VVDa~dg~~~qt~e~-l~-~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI  155 (537)
T 3izy_P           82 VVAADDGVMKQTVES-IQ-HAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM  155 (537)
T ss_dssp             ECBSSSCCCHHHHHH-HH-HHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred             EEECCCCccHHHHHH-HH-HHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence            999999776655443 32 222    3568999999999996433211 1111111   1111  357999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028381          166 QQCFEELVLKIL  177 (210)
Q Consensus       166 ~~~~~~l~~~~~  177 (210)
                      +++|+++...+.
T Consensus       156 ~eLle~I~~l~~  167 (537)
T 3izy_P          156 MALAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hhHHHHHHHhhh
Confidence            999999998764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.9e-21  Score=162.53  Aligned_cols=152  Identities=15%  Similarity=0.129  Sum_probs=102.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------------------------------CceeeeEEEEEEECCeE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP------------------------------TIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~   61 (210)
                      ...+||+++|++++|||||+++|++........                              ..|.++......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            456899999999999999999998663321110                              02333332233334455


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc---cH---HHHHHHHHHHHhhhccCCC-CcEEEEEeCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TF---TNLSDVWAKEIDLYSTNQD-CIKLLVGNKVDKES  134 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~  134 (210)
                      ..+.||||||++.+...+...++.+|++|+|+|++++.   ++   ..... ......    ..+ .|+|||+||+|+..
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e-~l~~~~----~lgi~~iIVVvNKiDl~~  319 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLAS----SLGIHNLIIAMNKMDNVD  319 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH-HHHHHH----TTTCCEEEEEEECTTTTT
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHH-HHHHHH----HcCCCeEEEEEecccccc
Confidence            68999999999999988889999999999999999742   11   11111 111111    223 45999999999976


Q ss_pred             Cceec----HHHHHHHHHHhC-----CeEEEEccCCCCCHHHH
Q 028381          135 ERVVT----KKEGINFAREYG-----CLFIECSAKTRVNVQQC  168 (210)
Q Consensus       135 ~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  168 (210)
                      .....    .+++..++...+     ++++++||++|.|+.++
T Consensus       320 ~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          320 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            33222    233344444443     57999999999999876

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.84  E-value=8e-21  Score=147.41  Aligned_cols=118  Identities=19%  Similarity=0.212  Sum_probs=93.6

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEECC----------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028381           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (210)
                      ..+.+.+||++|++.++..|..++++++++|+|||++          +..++..... |...+.......++|+++++||
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~NK  237 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFLNK  237 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEEEC
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEEEC
Confidence            4578999999999999999999999999999999998          6788888877 4444443344567999999999


Q ss_pred             CCCCCCc---------------eecHHHHHHHHHHh---------------------------CCeEEEEccCCCCCHHH
Q 028381          130 VDKESER---------------VVTKKEGINFAREY---------------------------GCLFIECSAKTRVNVQQ  167 (210)
Q Consensus       130 ~Dl~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~Sa~~~~~i~~  167 (210)
                      +|+...+               ....+++..++...                           .+.++++||++..||+.
T Consensus       238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~  317 (340)
T 4fid_A          238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR  317 (340)
T ss_dssp             HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred             chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence            9984211               01355555554332                           36689999999999999


Q ss_pred             HHHHHHHHHHc
Q 028381          168 CFEELVLKILD  178 (210)
Q Consensus       168 ~~~~l~~~~~~  178 (210)
                      +|..+.+.+++
T Consensus       318 vF~~v~~~Il~  328 (340)
T 4fid_A          318 VFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999987

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.84  E-value=1.2e-20  Score=156.93  Aligned_cols=157  Identities=20%  Similarity=0.133  Sum_probs=105.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEE------------EECCeEEEEEEEeCCCcccc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYV------------DVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~~~~~l~D~~g~~~~   75 (210)
                      +..+|+++|++++|||||+++|++..+....+     +.+..+.....            .++.....++||||||++.+
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            45799999999999999999998765433221     22211110000            00011125899999999999


Q ss_pred             ccchhhcccCccEEEEEEECCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-------------
Q 028381           76 RTLTSSYYRGAQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-------------  139 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-------------  139 (210)
                      ...+...++.+|++|+|+|+++.   .+++.+.     .+.    ..++|+++++||+|+.......             
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~  154 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD  154 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHH----HcCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence            99888889999999999999994   4443332     122    2568999999999986432110             


Q ss_pred             ----H------HHHHHHHHHh---------------CCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          140 ----K------KEGINFAREY---------------GCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       140 ----~------~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                          .      .+........               .++++++||++|.|++++++++...+..
T Consensus       155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence                0      0111111222               2379999999999999999999987753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.5e-21  Score=139.87  Aligned_cols=122  Identities=19%  Similarity=0.232  Sum_probs=86.5

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC----c
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG----A   86 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~   86 (210)
                      ....++|+++|++|||||||+++|.+..+.........+.     ..+...+.+.+||+||+..+...+..++..    +
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  119 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV  119 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-----eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence            4567999999999999999999999887644221111111     111144678999999999888777777665    8


Q ss_pred             cEEEEEEECC-CcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCce
Q 028381           87 QGIIMVYDVT-RRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERV  137 (210)
Q Consensus        87 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~  137 (210)
                      |++++|+|++ +..++..+..++...+....  ...++|+++|+||+|+.....
T Consensus       120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence            9999999999 88888888773333333211  235799999999999975543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.83  E-value=2.2e-21  Score=157.83  Aligned_cols=156  Identities=19%  Similarity=0.151  Sum_probs=90.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCC----------------------C------CCCceeeeEEEEEEECCeE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEE----------------------L------SPTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~--~~~~----------------------~------~~~~~~~~~~~~~~~~~~~   61 (210)
                      ...++|+++|++++|||||+++|+..  .+..                      .      ....+.+.......+....
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            56799999999999999999999742  1110                      0      0011222222111222234


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCc-
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESER-  136 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~-  136 (210)
                      ..+.+|||||++.|...+...+..+|++|+|+|+++..   +|+...+ +...+.. ....++| ++|++||+|+.... 
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~q-t~e~l~~-~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ-TREHAVL-ARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCC-HHHHHHH-HHHTTCSSEEEEEECTTSTTCSS
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCc-HHHHHHH-HHHcCCCEEEEEEECccCCCccc
Confidence            67899999999999988888899999999999999863   2221111 2222211 1124576 89999999995421 


Q ss_pred             -----eecHHHHHHHHHHh-------CCeEEEEccCCCCCHHHHH
Q 028381          137 -----VVTKKEGINFAREY-------GCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       137 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~  169 (210)
                           ....+++..++...       +++++++||++|.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 11233456666655       4569999999999998765

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.82  E-value=4e-20  Score=160.85  Aligned_cols=161  Identities=15%  Similarity=0.072  Sum_probs=110.5

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcC-------CCCC--------CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD-------NFEE--------LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~-------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ....++|+++|++++|||||+++|++.       .+..        ...+.+.++....+.++.....+.+|||||++.+
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            356799999999999999999999863       1100        1113444443333444555678999999999999


Q ss_pred             ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHhC
Q 028381           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREYG  151 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~  151 (210)
                      ...+...++.+|++|+|+|+++....+. .. ++..+..    .++| +||++||+|+......   ..+++..++...+
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rE-hL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G  446 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQT-RE-HILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD  446 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTTH-HH-HHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHHH-HH-HHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence            8888888999999999999998754333 23 3333332    3577 7899999999753221   2345666776665


Q ss_pred             -----CeEEEEccCCC--------CCHHHHHHHHHHHHH
Q 028381          152 -----CLFIECSAKTR--------VNVQQCFEELVLKIL  177 (210)
Q Consensus       152 -----~~~~~~Sa~~~--------~~i~~~~~~l~~~~~  177 (210)
                           ++++++||++|        .|+.++++.|.+.+.
T Consensus       447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence                 57999999999        457888888776553

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.81  E-value=2.4e-21  Score=157.29  Aligned_cols=152  Identities=16%  Similarity=0.152  Sum_probs=101.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCC----------------C------C------CceeeeEEEEEEECCeE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEEL----------------S------P------TIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~--~~~~~----------------~------~------~~~~~~~~~~~~~~~~~   61 (210)
                      ...++|+++|++++|||||+++|++.  .+...                .      .      ..+.+.......++...
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            45699999999999999999999864  11100                0      0      01222222222334455


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc---cHH---HHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFT---NLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKES  134 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  134 (210)
                      ..+.+|||||++.+...+...+..+|++|+|+|+++..   +|+   .... +.....    ..++| +++|+||+|+..
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~----~~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAF----TLGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHH----HTTCCEEEEEEECGGGGT
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHH----HcCCCeEEEEEEcccccc
Confidence            68999999999999988888999999999999999763   221   2222 222222    23455 899999999963


Q ss_pred             Cce----ecHHHHHHHHHHhC-----CeEEEEccCCCCCHHHH
Q 028381          135 ERV----VTKKEGINFAREYG-----CLFIECSAKTRVNVQQC  168 (210)
Q Consensus       135 ~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  168 (210)
                      ...    ...+++..++...+     ++++++||++|.|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            211    12344556666665     67999999999998754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.81  E-value=5.8e-22  Score=161.21  Aligned_cols=155  Identities=17%  Similarity=0.207  Sum_probs=103.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      .+..+|+++|++++|||||+++|.+..+.... +....+....  .+......++||||||++.+...+...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~--~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAY--HVETENGMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCC--CCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEE--EEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            35678999999999999999999865443211 1111111111  22222346899999999999999888899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc--eecHHH--HHHHHHHhC--CeEEEEccCCCCC
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVTKKE--GINFAREYG--CLFIECSAKTRVN  164 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~--~~~~~~~~~--~~~~~~Sa~~~~~  164 (210)
                      +|+|+++....+.... | ....    ..++|+++++||+|++...  .+..+.  ...+...++  ++++++||++|.|
T Consensus        80 LVVda~~g~~~qT~e~-l-~~~~----~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g  153 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEA-I-QHAK----AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG  153 (501)
T ss_dssp             EEEETTTBSCTTTHHH-H-HHHH----HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred             EEeecccCccHHHHHH-H-HHHH----hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence            9999998543222222 2 1121    3468999999999996432  111100  000111222  6899999999999


Q ss_pred             HHHHHHHHHH
Q 028381          165 VQQCFEELVL  174 (210)
Q Consensus       165 i~~~~~~l~~  174 (210)
                      ++++|+++..
T Consensus       154 I~eLle~I~~  163 (501)
T 1zo1_I          154 IDELLDAILL  163 (501)
T ss_dssp             CTTHHHHTTT
T ss_pred             cchhhhhhhh
Confidence            9999999864

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=1.6e-19  Score=132.16  Aligned_cols=160  Identities=16%  Similarity=0.142  Sum_probs=101.7

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----------FRTL   78 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~   78 (210)
                      +.....+|+++|++|||||||+++|.+..+ ..+.++.+.+.....+.+++   .+.+||+||...          +...
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   98 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA   98 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence            445668999999999999999999998774 33344666555433343333   478999999742          1212


Q ss_pred             hhhcc---cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhC--
Q 028381           79 TSSYY---RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYG--  151 (210)
Q Consensus        79 ~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~--  151 (210)
                      ...++   ..++++++++|++++.+.....  +...+.    ..+.|+++++||+|+.....  ...+.+..++...+  
T Consensus        99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~  172 (210)
T 1pui_A           99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD  172 (210)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred             HHHHHHhhhcccEEEEEEECCCCCchhHHH--HHHHHH----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence            22233   5789999999999876653211  222222    24678999999999864321  11344555555544  


Q ss_pred             CeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          152 CLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      +.++++||+++.|++++++++.+.+.+
T Consensus       173 ~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          173 VQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            468999999999999999999887643

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.81  E-value=2.5e-20  Score=143.66  Aligned_cols=159  Identities=21%  Similarity=0.150  Sum_probs=101.0

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----CCce----------------------eeeE------------
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----PTIG----------------------VDFK------------   51 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-----~~~~----------------------~~~~------------   51 (210)
                      ....++|+|+|.+|||||||+++|++..+.+..     ..++                      .+..            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            456789999999999999999999998874211     1121                      0000            


Q ss_pred             -----------EEEEEEC-CeEEEEEEEeCCCccc-------------cccchhhcccCccEEE-EEEECCCcccHHHHH
Q 028381           52 -----------VKYVDVG-GKKLKLAIWDTAGQER-------------FRTLTSSYYRGAQGII-MVYDVTRRDTFTNLS  105 (210)
Q Consensus        52 -----------~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~  105 (210)
                                 ...+.+. .....+.+|||||...             +...+..+++.++.++ +|+|+++..+.....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                       0000000 0125799999999642             3345556777887666 799998765544332


Q ss_pred             HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH--hC-CeEEEEccCCCCCHHHHHHHHHH
Q 028381          106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE--YG-CLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       106 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~l~~  174 (210)
                      . |...+.    ..+.|+++|+||+|+........+........  .+ .+++++||+++.|++++++++.+
T Consensus       183 ~-~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          183 K-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             H-HHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             H-HHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            2 333333    35689999999999965543222222110001  12 35889999999999999999887

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.80  E-value=5.2e-21  Score=159.42  Aligned_cols=151  Identities=21%  Similarity=0.170  Sum_probs=82.3

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCC------------------------------CCCCCceeeeEEEEEEECCe
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------------------------ELSPTIGVDFKVKYVDVGGK   60 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~   60 (210)
                      ....++|+++|++++|||||+++|++....                              ......+.+.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            456789999999999999999999642100                              00002234444444444555


Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc---cH---HHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCC
Q 028381           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TF---TNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKE  133 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~  133 (210)
                      ...+.||||||+..+...+...+..+|++|+|+|++++.   .+   ..... .+..+.    ..++| +|||+||+|+.
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e-~l~~~~----~lgip~iIvviNKiDl~  328 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTRE-HAYLLR----ALGISEIVVSVNKLDLM  328 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHH-HHHHHH----HSSCCCEEEEEECGGGG
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHH-HHHHHH----HcCCCeEEEEEeccccc
Confidence            678999999999999988888899999999999998643   11   11111 222222    23455 89999999996


Q ss_pred             CCceec----HHHHHHHH-HHhCC-----eEEEEccCCCCCHH
Q 028381          134 SERVVT----KKEGINFA-REYGC-----LFIECSAKTRVNVQ  166 (210)
Q Consensus       134 ~~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~  166 (210)
                      ......    .+++..+. ...++     +++++||++|.|+.
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            522211    22334444 33344     69999999999998

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.80  E-value=5.4e-19  Score=145.43  Aligned_cols=120  Identities=16%  Similarity=0.152  Sum_probs=81.6

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC---------------------CCCCceeeeEEEEEEECCeEEEEEEEe
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE---------------------LSPTIGVDFKVKYVDVGGKKLKLAIWD   68 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D   68 (210)
                      +.....+|+++|++|+|||||+++|+......                     .....+.++......+....+.+++||
T Consensus         9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liD   88 (529)
T 2h5e_A            9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLD   88 (529)
T ss_dssp             HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEEC
T ss_pred             hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEE
Confidence            34567999999999999999999998631100                     001222222222223333457899999


Q ss_pred             CCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      |||+..+...+...++.+|++|+|+|+++...... .. +...    ....++|+++++||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~-~~~~----~~~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RK-LMEV----TRLRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HH-HHHH----HTTTTCCEEEEEECTTSCCS
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HH-HHHH----HHHcCCCEEEEEcCcCCccc
Confidence            99999988888888999999999999998754322 22 2222    22457899999999998643

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.80  E-value=8.2e-19  Score=132.78  Aligned_cols=123  Identities=19%  Similarity=0.170  Sum_probs=82.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc-------
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR-------   84 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-------   84 (210)
                      ...++|+++|++|+|||||+++|++..+.......+.+.......+......+.+|||||+..+......+++       
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~  113 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV  113 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence            3679999999999999999999998876444443333332222222223458999999998776554333332       


Q ss_pred             --CccEEEEEEECCCcccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCC
Q 028381           85 --GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        85 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~  135 (210)
                        .+|++++|++++... +......|+..+.... .....|+++|+||+|+...
T Consensus       114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence              789999999987754 4333323666565432 2223599999999999544

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.78  E-value=1.9e-18  Score=146.02  Aligned_cols=117  Identities=11%  Similarity=0.072  Sum_probs=83.2

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----------------CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----------------TIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      .....+|+|+|++|+|||||+++|++........                 ..+.++......+....+.+++|||||+.
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence            4567899999999999999999998433211000                 01223333333333346789999999999


Q ss_pred             ccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      .+...+...++.+|++++|+|+++....... . +...+..    .++|+++++||+|+.
T Consensus        86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~-~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-R-AWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-H-HHHHHHH----TTCCEEEEEECGGGC
T ss_pred             chHHHHHHHHhhcCcEEEEEcCCcccchhHH-H-HHHHHHH----ccCCEEEEecCCchh
Confidence            9888888899999999999999887554433 2 3333332    468999999999986

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=3.7e-18  Score=129.77  Aligned_cols=124  Identities=19%  Similarity=0.152  Sum_probs=84.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh-------h--c
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS-------S--Y   82 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~--~   82 (210)
                      ...++|+++|.+|+|||||+++|++..+.......+.+.....+.+......+.+|||||...+.....       .  .
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            357999999999999999999999888654444444444444444444456799999999866543221       1  1


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCCc
Q 028381           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~  136 (210)
                      ...+|++++|+|++.. ++......|+..+.... ....+|+++|+||+|+...+
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            3478999999998763 34433333666665432 12236999999999996554

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=2.6e-18  Score=145.63  Aligned_cols=120  Identities=17%  Similarity=0.231  Sum_probs=83.8

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcC--CCCC------------C---CCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSD--NFEE------------L---SPTIGVDFKVKYVDVGGKKLKLAIWDTAG   71 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~--~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (210)
                      .+.....+|+|+|++|+|||||+++|+..  .+..            .   ....+.+.......+....+.+++|||||
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG   86 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPG   86 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCS
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcC
Confidence            34567899999999999999999999832  1100            0   00112222211222222357899999999


Q ss_pred             ccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      +..+...+...++.+|++|+|+|+++..+...... |.. +.    ..++|+++|+||+|+..
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~-~~----~~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQ-AE----KYKVPRIAFANKMDKTG  143 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHH-HH----HTTCCEEEEEECTTSTT
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHH-HH----HcCCCEEEEEECCCccc
Confidence            99988888889999999999999999888776654 543 22    24689999999999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.78  E-value=1.4e-18  Score=147.28  Aligned_cols=164  Identities=16%  Similarity=0.183  Sum_probs=108.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCcee--------------eeE--------------------------
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGV--------------DFK--------------------------   51 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~--------------~~~--------------------------   51 (210)
                      ...++|+|+|++|+|||||+|+|++.........+++              +..                          
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            4579999999999999999999998876544332221              000                          


Q ss_pred             ---------------EEEEEECCeE--EEEEEEeCCCccc---cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHH
Q 028381           52 ---------------VKYVDVGGKK--LKLAIWDTAGQER---FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKE  111 (210)
Q Consensus        52 ---------------~~~~~~~~~~--~~~~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  111 (210)
                                     ...+..+...  ..+.+|||||...   ....+..++..+|++++|+|++++.+...... |...
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~  225 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENY  225 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHH
Confidence                           0000000000  2589999999654   33455677889999999999999887766544 5444


Q ss_pred             HhhhccCCCCcEEEEEeCCCCCCCceecHH----------HHHHH----H-HH--------hCCeEEEEccC--------
Q 028381          112 IDLYSTNQDCIKLLVGNKVDKESERVVTKK----------EGINF----A-RE--------YGCLFIECSAK--------  160 (210)
Q Consensus       112 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----------~~~~~----~-~~--------~~~~~~~~Sa~--------  160 (210)
                      +.    ..+.|+++|+||+|+.....+..+          .+...    . ..        ...+++++||+        
T Consensus       226 l~----~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~  301 (695)
T 2j69_A          226 IK----GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK  301 (695)
T ss_dssp             TT----TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred             HH----hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence            43    236789999999998543311110          11111    1 11        12369999999        


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCC
Q 028381          161 ------TRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       161 ------~~~~i~~~~~~l~~~~~~~~  180 (210)
                            ++.|+++++..+.+.+.+..
T Consensus       302 ~~~~~~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          302 NPQADLDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             CTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred             CchhhhhccCHHHHHHHHHHHHHHhH
Confidence                  99999999999998876543

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.77  E-value=8.9e-18  Score=134.06  Aligned_cols=160  Identities=23%  Similarity=0.226  Sum_probs=108.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEEECCeEEEEEEEeCCCcccc----ccchh---hccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERF----RTLTS---SYYR   84 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~---~~~~   84 (210)
                      ..|+++|++|||||||++.|++.... ..++  +...+  .-.+..++ ...+.+||+||....    ..+..   ..+.
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~--~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e  234 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN--LGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIA  234 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE--EEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecce--eeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence            35789999999999999999977431 1122  12222  12223332 246889999996431    11212   2245


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC
Q 028381           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (210)
                      .++.+++++|++ ...+..+.. |...+..+.. -...|.++|+||+|+...  ...+.........+.+++.+||+++.
T Consensus       235 ra~~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~  310 (416)
T 1udx_A          235 RTRVLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGA  310 (416)
T ss_dssp             SSSEEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred             HHHhhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCcc
Confidence            799999999998 556666655 4444443321 124789999999998654  33344455555667899999999999


Q ss_pred             CHHHHHHHHHHHHHcCCC
Q 028381          164 NVQQCFEELVLKILDTPS  181 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~  181 (210)
                      |+++++++|.+.+.+.+.
T Consensus       311 gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          311 GLPALKEALHALVRSTPP  328 (416)
T ss_dssp             THHHHHHHHHHHHHTSCC
T ss_pred             CHHHHHHHHHHHHHhccc
Confidence            999999999999987654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.76  E-value=3.3e-18  Score=132.75  Aligned_cols=166  Identities=16%  Similarity=0.192  Sum_probs=99.9

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----Ccee-eeEEE-------------------------------
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGV-DFKVK-------------------------------   53 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----~~~~-~~~~~-------------------------------   53 (210)
                      .....+|+|+|++|+|||||+++|++..+.+...     .++. .....                               
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            3456899999999999999999999887622111     1100 00000                               


Q ss_pred             ---------------------EEE-ECCeEEEEEEEeCCCccc-------------cccchhhcccCccEEEEEEECCCc
Q 028381           54 ---------------------YVD-VGGKKLKLAIWDTAGQER-------------FRTLTSSYYRGAQGIIMVYDVTRR   98 (210)
Q Consensus        54 ---------------------~~~-~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~   98 (210)
                                           .+. .......+.+|||||...             +...+..++..+|++++|+|+++.
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~  180 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT  180 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence                                 000 011124689999999653             334556678899999999997543


Q ss_pred             ccH-HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC---C---CCCHHHHHHH
Q 028381           99 DTF-TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK---T---RVNVQQCFEE  171 (210)
Q Consensus        99 ~s~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~  171 (210)
                      ... ..... +...+.    ..+.|+++|+||+|+........+.+.......+..++++++.   +   +.|+.+++..
T Consensus       181 ~~~~~~~~~-i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~  255 (315)
T 1jwy_B          181 DLANSDALQ-LAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS  255 (315)
T ss_dssp             CSTTCSHHH-HHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred             chhhhHHHH-HHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence            211 11111 333332    3578999999999996554322222221111122456666655   4   7899999999


Q ss_pred             HHHHHHcCCC
Q 028381          172 LVLKILDTPS  181 (210)
Q Consensus       172 l~~~~~~~~~  181 (210)
                      +.+.+.....
T Consensus       256 ~~~~~~~~~~  265 (315)
T 1jwy_B          256 EILYFKNHPI  265 (315)
T ss_dssp             HHHHHHTCTT
T ss_pred             HHHHHhCCCc
Confidence            9888866543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.76  E-value=5.2e-19  Score=136.26  Aligned_cols=164  Identities=20%  Similarity=0.245  Sum_probs=88.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC-CCCCCC---------CCceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD-NFEELS---------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-------ER   74 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~   74 (210)
                      ...++|+++|++|+|||||+++|.+. .++...         ++.........+..++....+++||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            45689999999999999999998875 333221         11111111112222344578999999997       44


Q ss_pred             cccchh-------hccc-------------CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           75 FRTLTS-------SYYR-------------GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        75 ~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      +.....       .+++             .+++++++.+.+. .+++....   ..+...  ...+++++|+||.|+..
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l--~~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAI--HNKVNIVPVIAKADTLT  169 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHH--TTTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHH--HhcCCEEEEEEeCCCCC
Confidence            443332       2222             2334555555432 12333321   222222  24579999999999975


Q ss_pred             Ccee--cHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028381          135 ERVV--TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      .+.+  ..+++..++...+++++++||+++ |++++|.++.+.+.+..+.
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~  218 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPF  218 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence            4433  346778888899999999999999 9999999999999765543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.75  E-value=1e-17  Score=142.02  Aligned_cols=120  Identities=14%  Similarity=0.185  Sum_probs=83.7

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhc--CCCCCC---CC------------CceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTS--DNFEEL---SP------------TIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~--~~~~~~---~~------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      +.....+|+|+|++|+|||||+++|+.  +.+...   ..            ..+.+.......+....+.+++|||||+
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~   85 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH   85 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence            456679999999999999999999984  222100   00            1112221111222223478999999999


Q ss_pred             cccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      ..+...+...++.+|++|+|+|+++..+...... |.. +..    .++|+++|+||+|+...
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~-~~~----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQ-ATT----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHH-HHH----cCCCEEEEEECCCcccc
Confidence            9988888888999999999999999887766544 543 322    46899999999998643

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.75  E-value=4.4e-18  Score=135.90  Aligned_cols=160  Identities=18%  Similarity=0.234  Sum_probs=84.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CC--------CceeeeEEEEEEECCeEEEEEEEeCCCccccc------
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SP--------TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR------   76 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------   76 (210)
                      ...++|+|+|++|+|||||++.|++..+... ..        +.........+...+....+++||++|.....      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            4568899999999999999999998766321 11        11111111111113334578999999965431      


Q ss_pred             -c------------------chhhcccCccEEEEEEECCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028381           77 -T------------------LTSSYYRGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        77 -~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (210)
                       .                  +...++..+++.+++|..... .++......|+..+.     .++|+|+|+||+|+...+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~  183 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPE  183 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHH
Confidence             1                  123345555555555554432 344444323555443     368999999999997655


Q ss_pred             eecH--HHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          137 VVTK--KEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       137 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      .+..  +.+..++...+++++++|++++.+++++|..+...+
T Consensus       184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            5544  667788888899999999999999998887776543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.74  E-value=1.4e-18  Score=137.23  Aligned_cols=156  Identities=15%  Similarity=0.138  Sum_probs=101.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCcee---e-eE-------------------------------------
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGV---D-FK-------------------------------------   51 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~---~-~~-------------------------------------   51 (210)
                      ...+|+|+|++|||||||+++|++..+.+......+   + ..                                     
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            445999999999999999999999876332221100   0 00                                     


Q ss_pred             ------------EEEEEE-CCeEEEEEEEeCCCcccc-------------ccchhhcccCccEEEEEEECCCcccHHHHH
Q 028381           52 ------------VKYVDV-GGKKLKLAIWDTAGQERF-------------RTLTSSYYRGAQGIIMVYDVTRRDTFTNLS  105 (210)
Q Consensus        52 ------------~~~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  105 (210)
                                  ...+.+ ......+.+|||||...+             ......++.++|++|+|+|..+....... 
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~-  191 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD-  191 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH-
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH-
Confidence                        000000 011235899999997665             44566778999999999987665433222 


Q ss_pred             HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381          106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus       106 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                        |+..+.. ....+.|+++|+||+|+........+....+....+.+|++++++.+.++++.+.+.
T Consensus       192 --~~~l~~~-~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          192 --AIKISRE-VDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             --HHHHHHH-SCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             --HHHHHHH-hcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence              3333333 234568999999999997655444444444444556789999999998887765543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.74  E-value=5e-17  Score=137.98  Aligned_cols=120  Identities=14%  Similarity=0.120  Sum_probs=84.0

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcC--CCCC------------CCC---CceeeeEEE--EEEE-----CCeEEEE
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSD--NFEE------------LSP---TIGVDFKVK--YVDV-----GGKKLKL   64 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~--~~~~------------~~~---~~~~~~~~~--~~~~-----~~~~~~~   64 (210)
                      .+..+..+|+|+|+.++|||||+++|+..  .+..            ..+   ..+.+....  .+..     ++..+.+
T Consensus         5 ~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i   84 (704)
T 2rdo_7            5 TPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRI   84 (704)
T ss_pred             CCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeE
Confidence            34567789999999999999999999742  1111            000   112222222  1222     2234889


Q ss_pred             EEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           65 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        65 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      +||||||+..+...+...++.+|++|+|+|+++......... |.. ..    ..++|+++|+||+|+..
T Consensus        85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~-~~----~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQ-AN----KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHH-HH----HcCCCEEEEEeCCCccc
Confidence            999999999988888889999999999999998866554433 432 22    34689999999999854

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.74  E-value=2.4e-18  Score=136.97  Aligned_cols=84  Identities=29%  Similarity=0.352  Sum_probs=48.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEE-------------------ECC-eEEEEEEEeCCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVD-------------------VGG-KKLKLAIWDTAG   71 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~-~~~~--~~~~~~~~~~~~-------------------~~~-~~~~~~l~D~~g   71 (210)
                      ++|+++|.||||||||+|+|++.... ..++  |...+.....+.                   +++ ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987621 1222  222222221111                   122 247899999999


Q ss_pred             ccc----cccchh---hcccCccEEEEEEECCCc
Q 028381           72 QER----FRTLTS---SYYRGAQGIIMVYDVTRR   98 (210)
Q Consensus        72 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   98 (210)
                      ...    ...+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            743    222222   457899999999999885

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.71  E-value=1.6e-17  Score=131.68  Aligned_cols=123  Identities=20%  Similarity=0.155  Sum_probs=96.2

Q ss_pred             EEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHhhhccCCCCcE
Q 028381           54 YVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIK  123 (210)
Q Consensus        54 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~  123 (210)
                      .+.++  .+.+.+||++|++.+...|..++++++++|+|||+++          ..+|..+.. |+..+.......++|+
T Consensus       211 ~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          211 KFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCE
T ss_pred             EeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeE
Confidence            34444  3789999999999999999999999999999999999          889999888 6666654334567999


Q ss_pred             EEEEeCCCCCCCce---e---------------------------cHHHHHHHH-----HH--------hCCeEEEEccC
Q 028381          124 LLVGNKVDKESERV---V---------------------------TKKEGINFA-----RE--------YGCLFIECSAK  160 (210)
Q Consensus       124 ivv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~  160 (210)
                      +||+||+|+...+.   .                           ..+++..++     ..        ..+.+++|||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999843221   1                           134555553     21        24568899999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 028381          161 TRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~  179 (210)
                      ++.||+++|.++.+.+++.
T Consensus       368 d~~nV~~vF~~v~~~I~~~  386 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQRM  386 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHHH
Confidence            9999999999999988654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.70  E-value=1.5e-17  Score=128.23  Aligned_cols=132  Identities=18%  Similarity=0.159  Sum_probs=103.0

Q ss_pred             HHHHHHhcCCCC-CCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcc-cHHHHH
Q 028381           29 SLLLSFTSDNFE-ELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLS  105 (210)
Q Consensus        29 tli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  105 (210)
                      +|+.++..+.|. ..+ +|.+..+. ..+..++   .+.+||+  ++.+..++..+++++|++++|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888888886 444 57885443 2222222   6899999  8889999999999999999999999987 677666


Q ss_pred             HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CeEEEEccCCCCCHHHHHHHHH
Q 028381          106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus       106 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      . |+..+..    .++|+++|+||+|+.+.+.+  +++..++..++  .+++++||+++.|++++|.++.
T Consensus       106 ~-~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 K-FLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             H-HHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             H-HHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            6 7776653    47899999999999754432  45667777777  8999999999999999998764

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.68  E-value=2.4e-16  Score=130.27  Aligned_cols=121  Identities=14%  Similarity=0.136  Sum_probs=85.6

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcC---------------------CCCCCCCCceeeeEEEEEEECCeEEEEEEE
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSD---------------------NFEELSPTIGVDFKVKYVDVGGKKLKLAIW   67 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   67 (210)
                      .+..+.-||+|+|+.++|||||..+|+..                     ++.+....-+.++......+.+..+.++|+
T Consensus        26 ~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlI  105 (548)
T 3vqt_A           26 REAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLL  105 (548)
T ss_dssp             HHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEE
T ss_pred             hcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEE
Confidence            34457789999999999999999999621                     111111123333333333444456789999


Q ss_pred             eCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           68 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      ||||+..|.......++-+|++|+|+|+...-.-+.... |....     ..++|.++++||+|.+..
T Consensus       106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v-~~~a~-----~~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKL-MDVCR-----MRATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHH-HHHHH-----HTTCCEEEEEECTTSCCC
T ss_pred             eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHH-HHHHH-----HhCCceEEEEecccchhc
Confidence            999999999999999999999999999999876655444 54333     357899999999998543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.67  E-value=1e-16  Score=118.14  Aligned_cols=154  Identities=16%  Similarity=0.085  Sum_probs=95.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-Cceee--------------eEEEEEEE----------------CCeE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVD--------------FKVKYVDV----------------GGKK   61 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~--------------~~~~~~~~----------------~~~~   61 (210)
                      ...+|+++|++|||||||+++|.......... ....+              .....+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            45799999999999999999998653211100 00000              00011111                1123


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK  141 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  141 (210)
                      +.+.+|||+|......   .+....+.+++|+|+.+......  . +...       .+.|+++|+||+|+........+
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~~--~-~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~  175 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVVE--K-HPEI-------FRVADLIVINKVALAEAVGADVE  175 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHHH--H-CHHH-------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhhh--h-hhhh-------hhcCCEEEEecccCCcchhhHHH
Confidence            5678999998511111   11125688999999887643211  1 1111       13688999999998543223455


Q ss_pred             HHHHHHHHh--CCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          142 EGINFAREY--GCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       142 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ++..++...  +.+++++||++|.|++++|+++.+.+.+.
T Consensus       176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            555565554  47899999999999999999999987543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.67  E-value=4.6e-17  Score=128.24  Aligned_cols=105  Identities=11%  Similarity=0.096  Sum_probs=70.7

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028381           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK  140 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  140 (210)
                      .+.+.||||||...   .....+..+|++++|+|....+....+..          ...+.|+++|+||+|+........
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~----------~~~~~p~ivVlNK~Dl~~~~~~~~  237 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK----------GVLELADIVVVNKADGEHHKEARL  237 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT----------TSGGGCSEEEEECCCGGGHHHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH----------hHhhcCCEEEEECCCCcChhHHHH
Confidence            36789999999533   23344588999999999887655433211          012358999999999854322211


Q ss_pred             --HHHHHHHHH-------hCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          141 --KEGINFARE-------YGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       141 --~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                        ++.......       ++.+++++||++|.|+++++++|.+.+..
T Consensus       238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence              111111111       15789999999999999999999988754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.65  E-value=3e-18  Score=126.78  Aligned_cols=153  Identities=20%  Similarity=0.189  Sum_probs=90.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE------------EEEEEEC-Ce------------------
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK------------VKYVDVG-GK------------------   60 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~------------~~~~~~~-~~------------------   60 (210)
                      ...+|+|+|++|||||||+++|....+...+. +.+.++.            ...+.++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            56899999999999999999999775544222 2222221            1111111 10                  


Q ss_pred             -EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec
Q 028381           61 -KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT  139 (210)
Q Consensus        61 -~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  139 (210)
                       ...+.++|++|.-...   ..+-...+..+.++|+.........   +...       ...|.++|+||+|+.......
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~~---~~~~-------~~~~~iiv~NK~Dl~~~~~~~  183 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIEK---HPGI-------MKTADLIVINKIDLADAVGAD  183 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTTT---CHHH-------HTTCSEEEEECGGGHHHHTCC
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHhh---hhhH-------hhcCCEEEEeccccCchhHHH
Confidence             1134455555521100   0011123445566664332211100   1111       135789999999986443345


Q ss_pred             HHHHHHHHHHh--CCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          140 KKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       140 ~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      .+++..++...  +++++++||++|.|++++|+++.+.+.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          184 IKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            56666666654  5789999999999999999999988754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.65  E-value=7e-15  Score=115.10  Aligned_cols=143  Identities=21%  Similarity=0.197  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQERFR   76 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~   76 (210)
                      ++|+++|.||||||||+++|++..+. ..++  |...+...  +.+++.               ...+.+||+||.....
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~--v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV--VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE--EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEE--EecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            68999999999999999999987631 2222  33332222  233332               1579999999976543


Q ss_pred             ----cc---hhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHH----------------------------
Q 028381           77 ----TL---TSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKE----------------------------  111 (210)
Q Consensus        77 ----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~----------------------------  111 (210)
                          .+   ....++.+|++++|+|+++.          +.+..+.. +..+                            
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~-i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~  159 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDT-INTELALADLDSCERAIQRLQKRAKGGDKEAK  159 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHH-HHHHHHhhhHHHHhhHHHHHHHHhhccchhHH
Confidence                22   22347899999999999863          22222221 1111                            


Q ss_pred             ------------Hh-------------------hhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028381          112 ------------ID-------------------LYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus       112 ------------~~-------------------~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (210)
                                  +.                   .+.....+|+++++|+.|.........+.+..++...+.+++++||+
T Consensus       160 ~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          160 FELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                        11                   11122358999999999864322234566788888889999999965

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.64  E-value=1.5e-17  Score=131.02  Aligned_cols=158  Identities=21%  Similarity=0.163  Sum_probs=92.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----Ccee----------------------eeE-------------
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGV----------------------DFK-------------   51 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-----~~~~----------------------~~~-------------   51 (210)
                      ....+|+|+|.+|||||||+++|++.++.+...     .++.                      ++.             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            456799999999999999999999988742211     1110                      000             


Q ss_pred             ----------EEEEEEC-CeEEEEEEEeCCCccc-------------cccchhhcccCc-cEEEEEEECCCcccHHHHHH
Q 028381           52 ----------VKYVDVG-GKKLKLAIWDTAGQER-------------FRTLTSSYYRGA-QGIIMVYDVTRRDTFTNLSD  106 (210)
Q Consensus        52 ----------~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~  106 (210)
                                ...+.+. .....+.||||||...             +..+...++... +++++|.|++....-.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                      0000000 1135699999999532             233444555555 45555666654322222111


Q ss_pred             HHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH--HHHHhC-CeEEEEccCCCCCHHHHHHHHHH
Q 028381          107 VWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN--FAREYG-CLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       107 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~  174 (210)
                       +...+    ...+.|+++|+||+|+.+...........  +....+ .+++++||+++.|++++++++.+
T Consensus       189 -i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 -VAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             -HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             -HHHHh----CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence             22222    24578999999999996543311111110  001123 24788999999999999998876

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.63  E-value=1.3e-15  Score=131.61  Aligned_cols=118  Identities=19%  Similarity=0.267  Sum_probs=86.6

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCC------------CCCC-----C--CCceeeeEEEEEE------------EC
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN------------FEEL-----S--PTIGVDFKVKYVD------------VG   58 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~------------~~~~-----~--~~~~~~~~~~~~~------------~~   58 (210)
                      ......||+|+|++++|||||+++|+...            +...     .  .|.........+.            .+
T Consensus        15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~   94 (842)
T 1n0u_A           15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   94 (842)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence            34567899999999999999999998641            1110     0  0222222222232            24


Q ss_pred             CeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      +..+.++||||||+..+...+...++.+|++|+|+|+++..++..... |....     ..++|+++|+||+|+.
T Consensus        95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~-----~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQAL-----GERIKPVVVINKVDRA  163 (842)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHH-----HTTCEEEEEEECHHHH
T ss_pred             CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHH-----HcCCCeEEEEECCCcc
Confidence            457899999999999999999999999999999999999988877654 54332     2468999999999985

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.62  E-value=7.4e-16  Score=127.47  Aligned_cols=121  Identities=21%  Similarity=0.261  Sum_probs=80.9

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCe-------E-------------------
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--ELSPTIGVDFKVKYVDVGGK-------K-------------------   61 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~-------------------   61 (210)
                      ......+|+|+|.+|+|||||+|+|++..+.  .....+.++.... +..+..       .                   
T Consensus        61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~-i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~  139 (550)
T 2qpt_A           61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVA-VMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF  139 (550)
T ss_dssp             TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEE-EECCSSSEEECCC------------------CC
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEE-EEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence            3456789999999999999999999998764  2222221111110 000000       0                   


Q ss_pred             --------------EEEEEEeCCCccc-----------cccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhc
Q 028381           62 --------------LKLAIWDTAGQER-----------FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS  116 (210)
Q Consensus        62 --------------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  116 (210)
                                    ..+.||||||...           +...+..++..+|++++|+|+++......... |+..+.   
T Consensus       140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~-~l~~l~---  215 (550)
T 2qpt_A          140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSE-AIGALR---  215 (550)
T ss_dssp             CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHH-HHHHTT---
T ss_pred             cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHH-HHHHHH---
Confidence                          2589999999764           33455667889999999999988654444444 544443   


Q ss_pred             cCCCCcEEEEEeCCCCCCCc
Q 028381          117 TNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus       117 ~~~~~p~ivv~nK~Dl~~~~  136 (210)
                       ..+.|+++|+||+|+....
T Consensus       216 -~~~~pvilVlNK~Dl~~~~  234 (550)
T 2qpt_A          216 -GHEDKIRVVLNKADMVETQ  234 (550)
T ss_dssp             -TCGGGEEEEEECGGGSCHH
T ss_pred             -hcCCCEEEEEECCCccCHH
Confidence             3457999999999986543

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.59  E-value=6.1e-16  Score=130.16  Aligned_cols=114  Identities=14%  Similarity=0.150  Sum_probs=83.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC--CC------------CCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD--NF------------EELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~--~~------------~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      .||+|+|+.++|||||..+|+..  ..            .+..+   .-|.++......+...++.++|+|||||..|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            47999999999999999999621  11            11110   123444444445566677899999999999999


Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      .....++-+|++|+|+|+...-.-+.... |.....     .++|.++++||+|.+.
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v-~~~a~~-----~~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRIL-FHALRK-----MGIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHH-HHHHHH-----HTCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHH-HHHHHH-----cCCCeEEEEecccccc
Confidence            99999999999999999998765444332 543333     3578899999999753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.58  E-value=1.8e-14  Score=113.36  Aligned_cols=149  Identities=19%  Similarity=0.143  Sum_probs=91.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--CceeeeEEEEEEECC-------------------eEEEEEEEeCCCc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TIGVDFKVKYVDVGG-------------------KKLKLAIWDTAGQ   72 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~g~   72 (210)
                      ++|+++|.||||||||+++|++... ...++  |...+....  .+..                   ....+.+||+||.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            6899999999999999999997642 12222  222222222  2221                   2357999999997


Q ss_pred             ccccc----c---hhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHHH-----------------------
Q 028381           73 ERFRT----L---TSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEI-----------------------  112 (210)
Q Consensus        73 ~~~~~----~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~-----------------------  112 (210)
                      ....+    +   ....++.+|++++|+|+++.          +.+..+.. +...+                       
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~-i~~EL~~~d~~~l~k~~~~~~~~~~~~~  158 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEV-VETELLLADLATLERRLERLRKEARADR  158 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHH-HhhHHHHccHHHHHHHHHHHHhhhccch
Confidence            65421    2   23347899999999999862          12221111 10000                       


Q ss_pred             ----------------hh-------------------hccCCCCcEEEEEeCCCCC--CC-ceecHHHHHHHHHHhCCeE
Q 028381          113 ----------------DL-------------------YSTNQDCIKLLVGNKVDKE--SE-RVVTKKEGINFAREYGCLF  154 (210)
Q Consensus       113 ----------------~~-------------------~~~~~~~p~ivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~  154 (210)
                                      ..                   +.....+|+++++|+.|..  +. .....+.+..++...+.++
T Consensus       159 ~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~v  238 (368)
T 2dby_A          159 ERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEV  238 (368)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEE
T ss_pred             hHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeE
Confidence                            00                   0012247999999999742  22 1345667788888889999


Q ss_pred             EEEccCCCCCHH
Q 028381          155 IECSAKTRVNVQ  166 (210)
Q Consensus       155 ~~~Sa~~~~~i~  166 (210)
                      +++||+...++.
T Consensus       239 v~iSAk~E~el~  250 (368)
T 2dby_A          239 VVVSARLEAELA  250 (368)
T ss_dssp             EEECHHHHHHHH
T ss_pred             EEeechhHHHHH
Confidence            999988743333

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.57  E-value=3.7e-14  Score=120.81  Aligned_cols=124  Identities=13%  Similarity=0.128  Sum_probs=84.3

Q ss_pred             CcccccccceeeEEEEEcCCCCcHHHHHHHHhcC--------C------CCCC---CCCceeeeEE--EEEEEC-----C
Q 028381            4 SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSD--------N------FEEL---SPTIGVDFKV--KYVDVG-----G   59 (210)
Q Consensus         4 ~~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~--------~------~~~~---~~~~~~~~~~--~~~~~~-----~   59 (210)
                      .++...+.++.-||+|+|+.++|||||..+|+..        .      +.+.   ...-+.++..  ..+.+.     .
T Consensus         3 ~m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~   82 (709)
T 4fn5_A            3 HMARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQY   82 (709)
T ss_dssp             ---CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCS
T ss_pred             CCCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCC
Confidence            4555566788899999999999999999998621        1      1111   1122333322  222222     2


Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      ..+.++|+|||||..|.......++-+|++|+|+|+...-.-+...- |.....     .++|.++++||+|.+
T Consensus        83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~~-----~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQANK-----YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH-----HTCCEEEEEECSSST
T ss_pred             CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHHH-----cCCCeEEEEcccccc
Confidence            36899999999999999999999999999999999998766554433 544433     368999999999975

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.57  E-value=4.3e-15  Score=112.15  Aligned_cols=113  Identities=16%  Similarity=-0.001  Sum_probs=70.7

Q ss_pred             EEEEEEeCCCccccccchh------hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTS------SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      +.+.+|||||.........      ..+.. +++++++|+............+...... ....+.|+++|+||+|+...
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~iv~NK~D~~~~  186 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI-DLRLGATTIPALNKVDLLSE  186 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH-HHHHTSCEEEEECCGGGCCH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH-hcccCCCeEEEEeccccccc
Confidence            5789999999865443211      23456 8999999987554433332211111111 11235799999999998644


Q ss_pred             ceecHHHHHH----------------------------HHHHhC--CeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          136 RVVTKKEGIN----------------------------FAREYG--CLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       136 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ...  +++..                            ++...+  .+++++||+++.|++++++++.+.+..
T Consensus       187 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          187 EEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            321  11111                            123333  479999999999999999999987753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.56  E-value=2.2e-14  Score=112.63  Aligned_cols=102  Identities=10%  Similarity=0.099  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK  141 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  141 (210)
                      +.+.++||+|....   .......+|++++|+|++.+.....+..    .+      ...|.++|+||+|+....... .
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~----~i------l~~~~ivVlNK~Dl~~~~~~~-~  232 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR----GI------IEMADLVAVTKSDGDLIVPAR-R  232 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGHHHHH-H
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH----HH------HhcCCEEEEeeecCCCchhHH-H
Confidence            56789999995322   2344678999999999987643322211    11      135789999999985321110 1


Q ss_pred             HHHHHHH----------HhCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          142 EGINFAR----------EYGCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       142 ~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ....+..          ....+++.+||+++.|+++++++|.+.+.
T Consensus       233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            1122211          12456899999999999999999988763

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.55  E-value=2.9e-15  Score=117.32  Aligned_cols=104  Identities=15%  Similarity=0.134  Sum_probs=65.7

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028381           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK  140 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  140 (210)
                      .+.+.+|||||......   .....+|++++|+|++....+..+..    ..      .+.|.++|+||+|+........
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~----~~------~~~p~ivv~NK~Dl~~~~~~~~  214 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK----GL------MEVADLIVINKDDGDNHTNVAI  214 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH----HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH----hh------hcccCEEEEECCCCCChHHHHH
Confidence            35789999999654332   24578999999999976543221110    00      1357899999999864322211


Q ss_pred             --HHHHHHHHHh-------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          141 --KEGINFAREY-------GCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       141 --~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                        ++........       ..+++++||+++.|+++++++|.+.+.
T Consensus       215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence              1222221221       356899999999999999999998764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.51  E-value=9.2e-14  Score=109.35  Aligned_cols=155  Identities=16%  Similarity=0.082  Sum_probs=90.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc-------chhhccc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-------LTSSYYR   84 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~   84 (210)
                      .-..+|+++|.||||||||+|+|++... .....+++|.......+...+.++.++|+||......       .....++
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            3457999999999999999999998653 2223333443333333323345688899999533221       1233567


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCC--------ceecHHHHHHHHHHhCCeEE
Q 028381           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESE--------RVVTKKEGINFAREYGCLFI  155 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~--------~~~~~~~~~~~~~~~~~~~~  155 (210)
                      .+|++++|+|++++..-...   +...+... ..-...|.+++.||.|....        .....+++..+...+.+..-
T Consensus       149 ~ad~il~vvD~~~p~~~~~~---i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k  225 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLHHKQI---IEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA  225 (376)
T ss_dssp             HCSEEEEEEETTSHHHHHHH---HHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred             hcCccccccccCccHHHHHH---HHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence            89999999999987433222   22222221 11234677899999997321        23445566666555554322


Q ss_pred             EEccCCCCCHHHHHH
Q 028381          156 ECSAKTRVNVQQCFE  170 (210)
Q Consensus       156 ~~Sa~~~~~i~~~~~  170 (210)
                      ++--..+.+.+++.+
T Consensus       226 pv~~~~nv~eddl~d  240 (376)
T 4a9a_A          226 EIAFRCDATVDDLID  240 (376)
T ss_dssp             EEEECSCCCHHHHHH
T ss_pred             CeeecccCCHHHHHH
Confidence            333334445555443

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.45  E-value=2.2e-13  Score=115.42  Aligned_cols=158  Identities=20%  Similarity=0.141  Sum_probs=96.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee-----------------------------------------
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF-----------------------------------------   50 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~-----------------------------------------   50 (210)
                      ....+|+|+|.+++|||||+|+|++..+.+......+.+                                         
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            456799999999999999999999987632221111100                                         


Q ss_pred             -----------EEEEEEECCeEEEEEEEeCCCcccc-------------ccchhhcc-cCccEEEEEEECCCcccHHHHH
Q 028381           51 -----------KVKYVDVGGKKLKLAIWDTAGQERF-------------RTLTSSYY-RGAQGIIMVYDVTRRDTFTNLS  105 (210)
Q Consensus        51 -----------~~~~~~~~~~~~~~~l~D~~g~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  105 (210)
                                 ....+...+ ...+.|+||||....             ......++ ..+|++++|+|++.........
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                       000011111 124789999995431             11222233 5789999999998764433322


Q ss_pred             HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-H-HHHhC-CeEEEEccCCCCCHHHHHHHHHHH
Q 028381          106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-F-AREYG-CLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       106 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~  175 (210)
                      . +...+.    ..+.|+++|+||+|+............. . ....+ .+++.+||+++.|++++++.+.+.
T Consensus       208 ~-ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 K-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             H-HHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             H-HHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            2 333333    4578999999999996554332221110 0 00112 357889999999999999998873

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.43  E-value=7.9e-13  Score=101.78  Aligned_cols=97  Identities=20%  Similarity=0.164  Sum_probs=76.8

Q ss_pred             ccccccchhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-HHHHHHHHHH
Q 028381           72 QERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-KKEGINFARE  149 (210)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~  149 (210)
                      ++.+..+.+.+++++|++++|+|++++. ++..+.. |+..+..    .++|+++|+||+|+.+...+. .++...++..
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~  140 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD  140 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence            4566677778899999999999999986 7877666 7766553    578999999999996543322 4455666777


Q ss_pred             hCCeEEEEccCCCCCHHHHHHHHH
Q 028381          150 YGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus       150 ~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      .+.+++++||+++.|+++++..+.
T Consensus       141 ~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          141 AGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHhhcc
Confidence            789999999999999999987753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.40  E-value=1.6e-13  Score=107.18  Aligned_cols=104  Identities=8%  Similarity=0.056  Sum_probs=63.5

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028381           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK  140 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  140 (210)
                      .+.+.|+||+|.....   ......+|.+++|+|+...+....+..    .+.      ..+.++++||.|+........
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~----~i~------~~~~ivvlNK~Dl~~~~~~s~  213 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK----GIF------ELADMIAVNKADDGDGERRAS  213 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT----THH------HHCSEEEEECCSTTCCHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH----HHh------ccccEEEEEchhccCchhHHH
Confidence            3568999999965322   233568999999999875432211111    011      235577789999743322222


Q ss_pred             HHHHHHHHHh----------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          141 KEGINFAREY----------GCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       141 ~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      .....+....          ..+++.+||+++.|++++++.|.+.+.
T Consensus       214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2223332211          356899999999999999999988653

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.39  E-value=4.2e-13  Score=96.21  Aligned_cols=106  Identities=9%  Similarity=-0.032  Sum_probs=69.7

Q ss_pred             CCccccccchhhcccCccEEEEEEECCCcccHHHHHHHH---HHHHhhhccCCCCcEEEEEeCC-CCCCCceecHHHHHH
Q 028381           70 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVW---AKEIDLYSTNQDCIKLLVGNKV-DKESERVVTKKEGIN  145 (210)
Q Consensus        70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~  145 (210)
                      +|+..++++|..++.++|++|||+|.+|.+.++ ....+   ...+.......++|++|++||. |++..  +...++.+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHH
Confidence            378889999999999999999999999987655 33324   2222221112578999999995 67533  44444433


Q ss_pred             HHHH----hCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          146 FARE----YGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       146 ~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ....    ....+..|||.+|+|+.+.++||.+.+.+
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence            3221    23458999999999999999999877643

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.28  E-value=4.4e-11  Score=94.75  Aligned_cols=88  Identities=22%  Similarity=0.211  Sum_probs=58.0

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCe---------------EEEEEEEeCCCc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQ   72 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~   72 (210)
                      ......+|+++|++|||||||+|.|++.....  .++........-.+.+.+.               ...+.+||+||.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            34556899999999999999999999876422  2232222222223334431               135889999994


Q ss_pred             cc-------cccchhhcccCccEEEEEEECCC
Q 028381           73 ER-------FRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        73 ~~-------~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                      ..       +...+...++.+|++++|+|+.+
T Consensus        96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            32       22234455789999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.26  E-value=4.9e-12  Score=95.01  Aligned_cols=107  Identities=9%  Similarity=-0.028  Sum_probs=74.6

Q ss_pred             CCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHH---HHHhhhccCCCCcEEEEEeC-CCCCCCceecHHHHH
Q 028381           69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA---KEIDLYSTNQDCIKLLVGNK-VDKESERVVTKKEGI  144 (210)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~~~p~ivv~nK-~Dl~~~~~~~~~~~~  144 (210)
                      .+|+..++++|..++.++|++|||+|.+|.+.++ ....+.   ..+.......++|++|++|| .|++..  +...++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHH
Confidence            4578889999999999999999999999998765 322232   23322111367899999996 687543  4444433


Q ss_pred             HHHHH----hCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          145 NFARE----YGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       145 ~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      +....    ....+..|||.+|+|+.+.++|+.+.+.+
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            33221    23448999999999999999999988743

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.24  E-value=6.6e-12  Score=99.25  Aligned_cols=91  Identities=23%  Similarity=0.217  Sum_probs=51.5

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCe---------------EEEEEEEeCCCcc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQE   73 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~   73 (210)
                      .....++|+++|.+|||||||+++|++..+. ..++..........+.+.+.               ...+.+||+||..
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~   97 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV   97 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence            3355689999999999999999999987652 12221111122222333332               2358999999976


Q ss_pred             cccc-------chhhcccCccEEEEEEECCCccc
Q 028381           74 RFRT-------LTSSYYRGAQGIIMVYDVTRRDT  100 (210)
Q Consensus        74 ~~~~-------~~~~~~~~~d~~i~v~d~~~~~s  100 (210)
                      ...+       .+...++.+|++++|+|+.+..+
T Consensus        98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A           98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             ---------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            5433       44567889999999999986543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.10  E-value=1.6e-11  Score=96.93  Aligned_cols=141  Identities=15%  Similarity=0.148  Sum_probs=85.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC-----CCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD-----NFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSS   81 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~   81 (210)
                      .+|+++|.+|+|||||+|+|++.     ........+++|.....+.++..   +.++||||.......        ...
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~  239 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI  239 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence            57999999999999999999975     22223334455555555555543   788999995432211        111


Q ss_pred             cc--cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc
Q 028381           82 YY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        82 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      ++  ...+.++++++......+..+.  .   +. .....+.|+++++||.|....... ......+.+..+..+.+.++
T Consensus       240 ~~~~~~i~~~~~~l~~~~~~~~g~l~--~---l~-~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          240 ITPKREIHPRVYQLNEGQTLFFGGLA--R---LD-YIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HSCSSCCCCEEEEECTTEEEEETTTE--E---EE-EEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred             HhcccccCceEEEEcCCceEEECCEE--E---EE-EccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence            22  5679999999985432111111  0   11 123456899999999998544333 23334555566776666666


Q ss_pred             CCCCCH
Q 028381          160 KTRVNV  165 (210)
Q Consensus       160 ~~~~~i  165 (210)
                      .+..++
T Consensus       313 ~~~~~~  318 (369)
T 3ec1_A          313 RYAAEF  318 (369)
T ss_dssp             GGTTTC
T ss_pred             hhhhhc
Confidence            554443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.96  E-value=8.2e-11  Score=92.86  Aligned_cols=135  Identities=13%  Similarity=0.142  Sum_probs=78.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC------CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hh
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN------FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TS   80 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~   80 (210)
                      .+|+++|.+|+|||||+|+|++..      .......+++|.....+.+...   +.++||||.......        ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            579999999999999999998753      2222335566665555655543   789999995432211        11


Q ss_pred             hc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEc
Q 028381           81 SY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus        81 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (210)
                      .+  ....+.++++++......+..+.  .   +. .....+.|+++++||.|....... ......+.+..+..+.+.+
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~---~d-~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLA--R---FD-YVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTE--E---EE-EEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred             HhccccccCceEEEEcCCCEEEEcceE--E---EE-EecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence            11  35678889999875332211110  0   11 123456899999999998543322 2223444455566555444


Q ss_pred             c
Q 028381          159 A  159 (210)
Q Consensus       159 a  159 (210)
                      +
T Consensus       311 ~  311 (368)
T 3h2y_A          311 P  311 (368)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.91  E-value=1.8e-09  Score=86.12  Aligned_cols=141  Identities=20%  Similarity=0.247  Sum_probs=72.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECC--eEEEEEEEeCCCccccc----------
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGG--KKLKLAIWDTAGQERFR----------   76 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~----------   76 (210)
                      ...++++|+|++|+|||||++.|.+..+.....   ..+.......+....  ....++++|++|.....          
T Consensus        40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~  119 (427)
T 2qag_B           40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV  119 (427)
T ss_dssp             CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence            345679999999999999999999875422111   122222222222222  23478899998743210          


Q ss_pred             ----cch----hh---------cccC--ccE-EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028381           77 ----TLT----SS---------YYRG--AQG-IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        77 ----~~~----~~---------~~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (210)
                          ..+    ..         .+..  +|+ ++++.|+..+-+-..+.  ++..+     ..++|+|+|.||+|.....
T Consensus       120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Die--ilk~L-----~~~~~vI~Vi~KtD~Lt~~  192 (427)
T 2qag_B          120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLV--TMKKL-----DSKVNIIPIIAKADAISKS  192 (427)
T ss_dssp             HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHH--HHHHT-----CSCSEEEEEESCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHH--HHHHH-----hhCCCEEEEEcchhccchH
Confidence                001    01         1112  233 55566665544333321  22222     2578999999999975443


Q ss_pred             eec--HHHHHHHHHHhCCeEEEEcc
Q 028381          137 VVT--KKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       137 ~~~--~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      .+.  ...+.......|++++.+|.
T Consensus       193 E~~~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          193 ELTKFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHHHHHcCCcEEecCC
Confidence            321  11222223345677777764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.89  E-value=2.3e-09  Score=87.49  Aligned_cols=151  Identities=13%  Similarity=0.128  Sum_probs=84.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh------cCCC----CCC-CCCc-----------eeeeEEEEEE-------------
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFT------SDNF----EEL-SPTI-----------GVDFKVKYVD-------------   56 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~------~~~~----~~~-~~~~-----------~~~~~~~~~~-------------   56 (210)
                      .....|+|+|.+||||||++++|.      +.+.    .+. .+..           +..+......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            456789999999999999999997      3321    000 0100           0111100000             


Q ss_pred             ECCeEEEEEEEeCCCcccccc-chhh---c--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeC
Q 028381           57 VGGKKLKLAIWDTAGQERFRT-LTSS---Y--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNK  129 (210)
Q Consensus        57 ~~~~~~~~~l~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK  129 (210)
                      .....+.+.|+||||...... .+..   .  +..+|.+++|+|+.........    ...+..     .+|+ ++|+||
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~-----~~~i~gvVlNK  249 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD-----KVDVASVIVTK  249 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH-----HHCCCCEEEEC
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh-----hcCceEEEEeC
Confidence            000235689999999654321 1111   1  2278999999999876432211    122222     1464 899999


Q ss_pred             CCCCCCceecHHHHHHHHHHhCCeE------------------EEEccCCCCC-HHHHHHHHHHH
Q 028381          130 VDKESERVVTKKEGINFAREYGCLF------------------IECSAKTRVN-VQQCFEELVLK  175 (210)
Q Consensus       130 ~Dl~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~  175 (210)
                      .|......    .+.......+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       250 ~D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          250 LDGHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TTSCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CccccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99863321    1222334455553                  3368888988 98888888765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.89  E-value=7.7e-09  Score=78.19  Aligned_cols=136  Identities=18%  Similarity=0.149  Sum_probs=72.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------C-CceeeeEEEEEEECCeE--EEEEEEeCCCccccc-------
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-------P-TIGVDFKVKYVDVGGKK--LKLAIWDTAGQERFR-------   76 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~--~~~~l~D~~g~~~~~-------   76 (210)
                      .++++++|++|+|||||++.|++...+...       + ..........+......  ..++++|++|.....       
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            589999999999999999999865332111       0 00001111222222222  367899999832100       


Q ss_pred             ---cc------------------hhhcccCccEEEEEEECC-CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           77 ---TL------------------TSSYYRGAQGIIMVYDVT-RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        77 ---~~------------------~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                         ..                  -+..+..+.+.++++|.. .+-.-... . ++..+..    . +++++|.+|.|...
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~-~-~l~~L~~----~-~~vI~Vi~K~D~lt  154 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL-E-FMKHLSK----V-VNIIPVIAKADTMT  154 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH-H-HHHHHHT----T-SEEEEEETTGGGSC
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH-H-HHHHHHh----c-CcEEEEEeccccCC
Confidence               00                  011233468888999855 33222221 1 3333332    2 89999999999864


Q ss_pred             Cceec--HHHHHHHHHHhCCeEEE
Q 028381          135 ERVVT--KKEGINFAREYGCLFIE  156 (210)
Q Consensus       135 ~~~~~--~~~~~~~~~~~~~~~~~  156 (210)
                      .....  ...+.......++.+++
T Consensus       155 ~~e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          155 LEEKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHcCccccC
Confidence            43322  23344455566777664

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.88  E-value=3.3e-09  Score=83.75  Aligned_cols=97  Identities=15%  Similarity=0.201  Sum_probs=71.6

Q ss_pred             CccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH----H
Q 028381           71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN----F  146 (210)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~  146 (210)
                      ..+.|...+..+.+.+|++++|+|++++.      ..|...+..+.  .++|+++|+||+|+.... ...+....    +
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~  125 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFV--GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYS  125 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHS--SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHh--CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHH
Confidence            34677888888888999999999999853      12555555543  368999999999996443 22233333    3


Q ss_pred             HHHhCC---eEEEEccCCCCCHHHHHHHHHHHH
Q 028381          147 AREYGC---LFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       147 ~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      +...+.   +++.+||+++.|++++++.+.+..
T Consensus       126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            556677   799999999999999999997755

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.83  E-value=2.6e-08  Score=79.43  Aligned_cols=160  Identities=18%  Similarity=0.171  Sum_probs=85.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--Cceeee--EEEEEEECCeEEEEEEEeCCCcccccc----c-hhhcc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRT----L-TSSYY   83 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~----~-~~~~~   83 (210)
                      ....++|+|++|||||||+|.+.+...+....  ..+...  ....+. ......+.+||++|......    . ....+
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L  146 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  146 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence            34589999999999999999999743221111  111111  111111 11112478899998532111    1 11123


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC-------CCceec----HHHHHHHH----H
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE-------SERVVT----KKEGINFA----R  148 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-------~~~~~~----~~~~~~~~----~  148 (210)
                      ...+.+++ ++...... ..+ . +...+.    ..+.|+++|.||.|+.       .-....    .+.+..+.    .
T Consensus       147 ~~~~~~~~-lS~G~~~k-qrv-~-la~aL~----~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~  218 (413)
T 1tq4_A          147 YEYDFFII-ISATRFKK-NDI-D-IAKAIS----MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  218 (413)
T ss_dssp             GGCSEEEE-EESSCCCH-HHH-H-HHHHHH----HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CccCCeEE-eCCCCccH-HHH-H-HHHHHH----hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            34455554 77653221 111 1 222222    2357999999999862       111111    22233332    1


Q ss_pred             HhC---CeEEEEcc--CCCCCHHHHHHHHHHHHHcCCC
Q 028381          149 EYG---CLFIECSA--KTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       149 ~~~---~~~~~~Sa--~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      ..+   ..++.+|+  .++.|++++.+.+.+.+.+.+.
T Consensus       219 ~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~  256 (413)
T 1tq4_A          219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR  256 (413)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred             hcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence            222   25788999  5666799999999988865553

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.81  E-value=3.8e-09  Score=80.40  Aligned_cols=59  Identities=29%  Similarity=0.450  Sum_probs=38.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      ...++|+++|.||+|||||+|+|.+.....+...+++|.....+..+.   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            456899999999999999999999887666666666655444444433   47899999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.78  E-value=2.5e-09  Score=80.53  Aligned_cols=57  Identities=18%  Similarity=0.358  Sum_probs=37.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      ++++++|.+|+|||||+|+|.+.......++++.+.....+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            699999999999999999999887655555666665544444332   478999999654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.77  E-value=4.1e-09  Score=83.23  Aligned_cols=97  Identities=18%  Similarity=0.195  Sum_probs=70.2

Q ss_pred             CccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH----
Q 028381           71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF----  146 (210)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----  146 (210)
                      .++.|.+.+..++..++++++|+|+++..+.      |...+..+.  .+.|+++|+||+|+..... ..+....+    
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s------~~~~l~~~l--~~~piilV~NK~DLl~~~~-~~~~~~~~l~~~  127 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGS------FIPGLPRFA--ADNPILLVGNKADLLPRSV-KYPKLLRWMRRM  127 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGGG------CCSSHHHHC--TTSCEEEEEECGGGSCTTC-CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCCc------hhhHHHHHh--CCCCEEEEEEChhcCCCcc-CHHHHHHHHHHH
Confidence            4677888888888899999999999997741      333333332  3689999999999965432 22333333    


Q ss_pred             HHHhCC---eEEEEccCCCCCHHHHHHHHHHHH
Q 028381          147 AREYGC---LFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       147 ~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      +...+.   +++.+||+++.|++++++.+.+..
T Consensus       128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            455676   689999999999999999987765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.75  E-value=1.6e-08  Score=76.91  Aligned_cols=99  Identities=11%  Similarity=0.048  Sum_probs=68.6

Q ss_pred             EeCCCcc-ccccchhhcccCccEEEEEEECCCcccHHH--HHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHH
Q 028381           67 WDTAGQE-RFRTLTSSYYRGAQGIIMVYDVTRRDTFTN--LSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEG  143 (210)
Q Consensus        67 ~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  143 (210)
                      -..|||. .........+..+|+++.|+|+.++.+...  +.. |   +      .++|.++|+||+|+.+..  ..+..
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~-~---l------~~kp~ilVlNK~DL~~~~--~~~~~   71 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIED-I---L------KNKPRIMLLNKADKADAA--VTQQW   71 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHH-H---C------SSSCEEEEEECGGGSCHH--HHHHH
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHH-H---H------CCCCEEEEEECcccCCHH--HHHHH
Confidence            3578875 333455667889999999999999877642  222 2   1      468999999999996531  12223


Q ss_pred             HHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          144 INFAREYGCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       144 ~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ..+....+.+++.+||+++.|++++++.+.+.+.
T Consensus        72 ~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           72 KEHFENQGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            3444456789999999999999999998877764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.54  E-value=2.2e-07  Score=74.56  Aligned_cols=86  Identities=17%  Similarity=0.135  Sum_probs=51.2

Q ss_pred             EEEEEEeCCCccccccch----h--hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLT----S--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      +.+.++||+|........    .  .....+|.+++|+|+..........    ..+..    .-.+..||.||.|....
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a----~~f~~----~~~i~gVIlTKlD~~~~  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA----LAFKE----ATPIGSIIVTKLDGSAK  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH----HHHHH----SCTTEEEEEECCSSCSS
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH----HHHHh----hCCCeEEEEECCCCccc
Confidence            568899999954322211    1  1123578999999988754332221    22221    11345689999998533


Q ss_pred             ceecHHHHHHHHHHhCCeEEEEcc
Q 028381          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      .    ..+..+....+.|+.+++.
T Consensus       255 g----G~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          255 G----GGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             H----HHHHHHHHTTCCCEEEEEC
T ss_pred             c----cHHHHHHHHHCCCEEEEEc
Confidence            2    2344555667889877775

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.35  E-value=3.5e-07  Score=70.16  Aligned_cols=89  Identities=15%  Similarity=0.105  Sum_probs=61.7

Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhCCeEE
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYGCLFI  155 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~  155 (210)
                      +.+..+.++|.+++|+|+.++..-......++....    ..++|.++|+||+|+.+...  ...+....+....|.+++
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            445568899999999999987654433332433332    45788899999999976532  112344555556788999


Q ss_pred             EEccCCCCCHHHHHH
Q 028381          156 ECSAKTRVNVQQCFE  170 (210)
Q Consensus       156 ~~Sa~~~~~i~~~~~  170 (210)
                      .+||.++.|+++++.
T Consensus       155 ~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          155 LTSSKDQDSLADIIP  169 (307)
T ss_dssp             ECCHHHHTTCTTTGG
T ss_pred             EEecCCCCCHHHHHh
Confidence            999999888776554

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.35  E-value=6.5e-07  Score=74.38  Aligned_cols=63  Identities=16%  Similarity=0.106  Sum_probs=40.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC-CceeeeEEEEE--EE-CCeEEEEEEEeCCCccc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP-TIGVDFKVKYV--DV-GGKKLKLAIWDTAGQER   74 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~-~~~~~~~~~~~--~~-~~~~~~~~l~D~~g~~~   74 (210)
                      ...++|+|+|.||+|||||+|+|++.... .... +.+.+.....+  .. ......+.++||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            46789999999999999999999987632 2222 22323222222  11 12234688999999643

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.33  E-value=3e-07  Score=69.12  Aligned_cols=93  Identities=16%  Similarity=0.119  Sum_probs=61.8

Q ss_pred             CCCcccc-ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q 028381           69 TAGQERF-RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA  147 (210)
Q Consensus        69 ~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  147 (210)
                      .|||... .......+.++|+++.|+|+.++.+.....      +. ..   ++|.++|+||+|+.+...  .+....+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~------l~-ll---~k~~iivlNK~DL~~~~~--~~~~~~~~   71 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG------VD-FS---RKETIILLNKVDIADEKT--TKKWVEFF   71 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT------SC-CT---TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH------HH-hc---CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence            4665432 234556788999999999999987654321      11 11   689999999999965321  22334445


Q ss_pred             HHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028381          148 REYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       148 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (210)
                      ...+.++ .+||+++.|+++++..+..
T Consensus        72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           72 KKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            5667888 9999999999998876644

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.26  E-value=7.7e-07  Score=71.34  Aligned_cols=91  Identities=16%  Similarity=0.167  Sum_probs=53.8

Q ss_pred             EEEEEEEeCCCccc--ccc----chhhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028381           61 KLKLAIWDTAGQER--FRT----LTSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        61 ~~~~~l~D~~g~~~--~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (210)
                      .+.+.++||||...  ...    .....  ....+.+++|+|+...........    .+..    .-.+..||.||.|.
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~----~f~~----~~~~~gVIlTKlD~  250 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS----RFHQ----ASPIGSVIITKMDG  250 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH----HHHH----HCSSEEEEEECGGG
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH----HHhc----ccCCcEEEEecccc
Confidence            35678899999544  221    11111  124689999999987544333222    2221    11356789999997


Q ss_pred             CCCceecHHHHHHHHHHhCCeEEEEccCCCCCH
Q 028381          133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (210)
                      ..    ....+.......+.|+.+++.  |+++
T Consensus       251 ~a----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          251 TA----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             CS----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             cc----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence            52    223455566677999888876  5443

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.17  E-value=3.2e-06  Score=67.92  Aligned_cols=85  Identities=20%  Similarity=0.154  Sum_probs=49.2

Q ss_pred             EEEEEEEeCCCcccccc-ch---h--hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCC-c-EEEEEeCCCC
Q 028381           61 KLKLAIWDTAGQERFRT-LT---S--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC-I-KLLVGNKVDK  132 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~-~~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl  132 (210)
                      .+.+.++||||...... ..   .  ..+..+|.+++|+|+.....   ... ....+.     ... | ..+|.||.|.
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~-----~~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-QAKAFK-----EAVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-HHHHHH-----TTSCSCEEEEEECSSS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-HHHHHh-----hcccCCeEEEEeCCCC
Confidence            45688999999654321 11   1  11236899999999876542   211 111121     224 4 7899999997


Q ss_pred             CCCceecHHHHHHHHHHhCCeEEEEc
Q 028381          133 ESERVVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (210)
                      ....    ..+..+....+.|+..++
T Consensus       251 ~~~~----g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          251 SAKG----GGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             CSTT----HHHHHHHHHSSCCEEEEC
T ss_pred             ccch----HHHHHHHHHHCCCEEEee
Confidence            5321    123445666787766654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.11  E-value=2e-06  Score=65.78  Aligned_cols=92  Identities=16%  Similarity=0.173  Sum_probs=54.5

Q ss_pred             EEEEEEEeCCCccc--ccc-chh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCC
Q 028381           61 KLKLAIWDTAGQER--FRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVD  131 (210)
Q Consensus        61 ~~~~~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D  131 (210)
                      .+.+.++||||...  ... ...     ..+..+|.+++|+|+....   .... ....+..     ..+ ..+|.||.|
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~-~~~~~~~-----~~~i~gvVlnk~D  250 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYD-LASKFNQ-----ASKIGTIIITKMD  250 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHH-HHHHHHH-----TCTTEEEEEECGG
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHH-HHHHHHh-----hCCCCEEEEeCCC
Confidence            35688999999765  321 111     1234689999999987532   2222 1122221     244 678899999


Q ss_pred             CCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381          132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      ....    ...+..+....+.|+..++  .|.++++
T Consensus       251 ~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          251 GTAK----GGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             GCTT----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             CCcc----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            7432    2345566777888987776  4555443

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.09  E-value=5.7e-06  Score=69.44  Aligned_cols=25  Identities=32%  Similarity=0.510  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFE   40 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~   40 (210)
                      .|+|+|++|||||||++.+.+-..+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCC
Confidence            4999999999999999999986433

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.98  E-value=2.7e-05  Score=60.92  Aligned_cols=86  Identities=17%  Similarity=0.186  Sum_probs=55.8

Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHhCCeEEEEcc
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      ..+.++|.+++|.+. ++..-......++....    ..++|.++|+||+|+.+.... ..+.........|.+++.+||
T Consensus       126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa  200 (358)
T 2rcn_A          126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSS  200 (358)
T ss_dssp             EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBT
T ss_pred             HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEec
Confidence            357889999988665 45443333232433332    235778999999999754321 122233444567889999999


Q ss_pred             CCCCCHHHHHHH
Q 028381          160 KTRVNVQQCFEE  171 (210)
Q Consensus       160 ~~~~~i~~~~~~  171 (210)
                      .++.|++++...
T Consensus       201 ~~~~gl~~L~~~  212 (358)
T 2rcn_A          201 HTQDGLKPLEEA  212 (358)
T ss_dssp             TTTBTHHHHHHH
T ss_pred             CCCcCHHHHHHh
Confidence            999999987654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.92  E-value=9.6e-06  Score=62.86  Aligned_cols=90  Identities=12%  Similarity=0.146  Sum_probs=49.6

Q ss_pred             EEEEEeCCCccccccchhh------cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028381           63 KLAIWDTAGQERFRTLTSS------YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (210)
                      .+.++|++|..........      ..-..|-.+++.|+.....   +.. ....+..   ..+ .-+++.||.|.... 
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~---~~~-~~~~~~~---~~~-it~iilTKlD~~a~-  283 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA---IVE-QARQFNE---AVK-IDGIILTKLDADAR-  283 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHH-HHHHHHH---HSC-CCEEEEECGGGCSC-
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH---HHH-HHHHHHH---hcC-CCEEEEeCcCCccc-
Confidence            3567899996432221111      1124688899999776532   222 1122221   112 23788999996322 


Q ss_pred             eecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381          137 VVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                         .-.+..+....+.|+..++  +|.+++
T Consensus       284 ---~G~~l~~~~~~~~pi~~i~--~Ge~v~  308 (328)
T 3e70_C          284 ---GGAALSISYVIDAPILFVG--VGQGYD  308 (328)
T ss_dssp             ---CHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred             ---hhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence               2234566777899988777  555543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.89  E-value=6.3e-07  Score=73.00  Aligned_cols=101  Identities=15%  Similarity=0.069  Sum_probs=56.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--cccch--------hh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--FRTLT--------SS   81 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~--------~~   81 (210)
                      .....|+++|.+||||||+.++|.........++.............+......+||..|...  ....+        ..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            445789999999999999999987442211111221110000000111112345788888632  22222        34


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHhh
Q 028381           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL  114 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  114 (210)
                      ++...++.++|+|.++. +...... |...+..
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~-~~~~~~~  147 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAM-IFNFGEQ  147 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHH-HHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHH-HHHHHHh
Confidence            45567888999999987 4444443 6655554

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.83  E-value=3.3e-05  Score=62.14  Aligned_cols=25  Identities=20%  Similarity=0.134  Sum_probs=22.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ....-|.|+|++++|||||+|+|++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            4567789999999999999999985

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.59  E-value=3.6e-05  Score=54.28  Aligned_cols=22  Identities=32%  Similarity=0.726  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      +++++|++|||||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.50  E-value=0.00043  Score=55.64  Aligned_cols=84  Identities=17%  Similarity=0.101  Sum_probs=46.0

Q ss_pred             EEEEEEEeCCCcccccc-chh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCC
Q 028381           61 KLKLAIWDTAGQERFRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKE  133 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~  133 (210)
                      .+.+.|+||||...... ...     ..+..++.+++|+|+.........    ...+..     ..+ .-+|.||.|..
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~----~~~f~~-----~l~i~gvVlnK~D~~  253 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT----AKAFNE-----ALPLTGVVLTKVDGD  253 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH----HHHHHH-----HSCCCCEEEECTTSS
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH----HHHHhc-----cCCCeEEEEecCCCC
Confidence            35688999999654322 111     113468899999998755332211    112221     123 24789999974


Q ss_pred             CCceecHHHHHHHHHHhCCeEEEE
Q 028381          134 SERVVTKKEGINFAREYGCLFIEC  157 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      ...    ..+..+....+.|+..+
T Consensus       254 ~~~----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          254 ARG----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             SCC----THHHHHHHHHCCCEEEE
T ss_pred             ccH----HHHHHHHHHHCCCeEEE
Confidence            221    13345555567664444

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.48  E-value=5.6e-05  Score=53.29  Aligned_cols=22  Identities=23%  Similarity=0.593  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5889999999999999999864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.47  E-value=6.5e-05  Score=53.77  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=22.7

Q ss_pred             cccccccceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus         5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      +....+....--|+|+|++|||||||++.|...
T Consensus        10 ~~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           10 GRENLYFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             ------CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccccCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            333444445567899999999999999999854

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.45  E-value=4.9e-05  Score=58.25  Aligned_cols=24  Identities=42%  Similarity=0.566  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -.++|+|++|||||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            478999999999999999998654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.44  E-value=6.7e-05  Score=53.79  Aligned_cols=21  Identities=38%  Similarity=0.608  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .++|+|++|||||||++.|.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999975

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.43  E-value=0.00012  Score=57.20  Aligned_cols=24  Identities=42%  Similarity=0.475  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      .++|+|++|||||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999997654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.37  E-value=9.6e-05  Score=52.38  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.|+++|++|||||||++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            346899999999999999999865

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.36  E-value=9.4e-05  Score=53.00  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -++++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4889999999999999999864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.34  E-value=0.00048  Score=52.72  Aligned_cols=23  Identities=48%  Similarity=0.732  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -.++++|++|||||||+|.+. ..
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh
Confidence            357899999999999999998 54

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.34  E-value=0.0001  Score=51.56  Aligned_cols=20  Identities=35%  Similarity=0.554  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.31  E-value=0.00012  Score=52.86  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .---++|+|++|||||||++.+.+..
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            33458899999999999999998653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.30  E-value=0.00014  Score=52.03  Aligned_cols=32  Identities=19%  Similarity=0.371  Sum_probs=23.4

Q ss_pred             cccccccceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus         5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      +.+.........|+|.|++||||||+.+.|..
T Consensus        11 ~~~~~~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           11 SSGLVPRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             -----CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34445556677899999999999999999864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.30  E-value=0.00012  Score=53.33  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++|+|++|||||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999998653

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.27  E-value=0.00013  Score=53.09  Aligned_cols=24  Identities=33%  Similarity=0.660  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -.++|+|++|||||||++.+.+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358999999999999999998643

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.25  E-value=0.00017  Score=51.21  Aligned_cols=21  Identities=38%  Similarity=0.684  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999743

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.24  E-value=0.00015  Score=52.27  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -|+|+|++|||||||++.|....
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            58899999999999999998653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.22  E-value=0.00015  Score=52.29  Aligned_cols=26  Identities=23%  Similarity=0.239  Sum_probs=22.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .....|+|+|++|||||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44578999999999999999988753

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.20  E-value=0.0012  Score=52.94  Aligned_cols=86  Identities=19%  Similarity=0.202  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCcccccc-chh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           62 LKLAIWDTAGQERFRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      +.+.++||||...... ...     .....+|.+++|+|+.....   ... ....+..   ..+ ..-||.||.|....
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~-~a~~f~~---~l~-i~GVIlTKlD~~~~  252 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALS-VARAFDE---KVG-VTGLVLTKLDGDAR  252 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHH-HHHHHHH---HTC-CCEEEEESGGGCSS
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHH-HHHHHHh---cCC-ceEEEEeCcCCccc
Confidence            4688999999654321 111     11225788999999874322   212 1122221   111 24578899996422


Q ss_pred             ceecHHHHHHHHHHhCCeEEEEcc
Q 028381          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      .    ..+..+....+.|+..+..
T Consensus       253 ~----g~alsi~~~~g~PI~flg~  272 (425)
T 2ffh_A          253 G----GAALSARHVTGKPIYFAGV  272 (425)
T ss_dssp             C----HHHHHHHHHHCCCEEEEEC
T ss_pred             H----HHHHHHHHHHCCCEEEEeC
Confidence            1    2345566677888766653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.19  E-value=0.00019  Score=49.49  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999998754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.18  E-value=0.0002  Score=52.83  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.18  E-value=0.00021  Score=49.64  Aligned_cols=19  Identities=32%  Similarity=0.482  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 028381           16 KLLMIGDSGVGKSSLLLSF   34 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l   34 (210)
                      -|+|.|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999999

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.16  E-value=0.00023  Score=51.18  Aligned_cols=23  Identities=39%  Similarity=0.583  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999743

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.16  E-value=0.00022  Score=49.64  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.14  E-value=0.00022  Score=52.11  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.14  E-value=0.00022  Score=51.10  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      ..|+|+|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999998654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.14  E-value=0.00023  Score=50.42  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -++++|++|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.13  E-value=0.00026  Score=50.98  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ....|+++|++|||||||++.|.+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.13  E-value=0.00031  Score=49.09  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..|++.|++||||||+++.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4589999999999999999986

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.12  E-value=0.00027  Score=49.01  Aligned_cols=21  Identities=14%  Similarity=0.205  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999863

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.12  E-value=0.00029  Score=52.16  Aligned_cols=22  Identities=23%  Similarity=0.581  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      .-.|+|+|++|||||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999998

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.11  E-value=0.00027  Score=52.23  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.10  E-value=0.00026  Score=50.64  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      -.|+++|++||||||+++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.10  E-value=0.00028  Score=51.01  Aligned_cols=20  Identities=20%  Similarity=0.453  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      +|+|.|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999999985

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.09  E-value=0.00031  Score=50.70  Aligned_cols=20  Identities=25%  Similarity=0.506  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      +|+|+|+|||||+|...+|.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La   21 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLA   21 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999886

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.08  E-value=0.0003  Score=50.92  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      +|+|+|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999985

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.08  E-value=0.0003  Score=51.07  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|+.|||||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.08  E-value=0.00029  Score=53.19  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.08  E-value=0.00027  Score=50.30  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5789999999999999988753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.08  E-value=0.00029  Score=52.80  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.06  E-value=0.00034  Score=51.64  Aligned_cols=23  Identities=35%  Similarity=0.577  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.05  E-value=0.00026  Score=49.67  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.05  E-value=0.00039  Score=48.51  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      -.|+++|++||||||+++.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.04  E-value=0.00032  Score=52.41  Aligned_cols=23  Identities=39%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.04  E-value=0.00033  Score=52.62  Aligned_cols=23  Identities=39%  Similarity=0.515  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.04  E-value=0.00034  Score=48.85  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -|++.|++||||||+.+.|..
T Consensus         5 ~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999874

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.03  E-value=0.00038  Score=51.53  Aligned_cols=23  Identities=26%  Similarity=0.314  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998653

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.03  E-value=0.00039  Score=49.72  Aligned_cols=23  Identities=26%  Similarity=0.587  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .-.|+++|++||||||+.+.|..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34799999999999999998863

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.02  E-value=0.00035  Score=52.37  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999998653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.02  E-value=0.00036  Score=51.20  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|+.|||||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.02  E-value=0.00038  Score=51.66  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998764

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.01  E-value=0.00036  Score=51.60  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|+.|||||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.01  E-value=0.00037  Score=52.02  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|+.|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.00  E-value=0.00038  Score=51.74  Aligned_cols=23  Identities=35%  Similarity=0.574  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998664

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.99  E-value=0.00038  Score=53.25  Aligned_cols=23  Identities=35%  Similarity=0.265  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      =.++|+|++|+|||||++.|.+-
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhhh
Confidence            36899999999999999998754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.99  E-value=0.00039  Score=49.77  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .+|+|+|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999876

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.99  E-value=0.00038  Score=49.79  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..|+|+|++||||||+++.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.99  E-value=0.0004  Score=51.68  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++++|++|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999975

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.99  E-value=0.00049  Score=49.34  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999975

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.98  E-value=0.00037  Score=52.20  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      =.++|+|++|||||||++.+.+.
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            36899999999999999998753

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.97  E-value=0.00044  Score=48.80  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .|+|.|++||||||+++.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998863

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.97  E-value=0.00056  Score=48.10  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ...|++.|++||||||+.+.|.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999986

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.97  E-value=0.00043  Score=52.01  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999975

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.97  E-value=0.00055  Score=48.93  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHh
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ......|+|.|++||||||+.+.|.
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHH
Confidence            3455689999999999999999886

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.97  E-value=0.00045  Score=51.67  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++++|++|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999999875

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.96  E-value=0.00051  Score=50.80  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ....+|+|+|++||||||+.+.|.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            356899999999999999999986

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.96  E-value=0.00042  Score=52.18  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++|+|++|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.95  E-value=0.00045  Score=48.44  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-++|+|++|||||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            45789999999999999999854

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.95  E-value=0.00048  Score=52.09  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|+.|||||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.95  E-value=0.00049  Score=48.40  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028381           15 FKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~   35 (210)
                      ..|+++|++||||||+.+.|.
T Consensus         6 ~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            469999999999999999985

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.95  E-value=0.0006  Score=52.42  Aligned_cols=27  Identities=22%  Similarity=0.171  Sum_probs=23.3

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .....-|+|+|++|||||||++.|.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            456678999999999999999998754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.94  E-value=0.00048  Score=50.11  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..|+++|++||||||+++.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.94  E-value=0.00044  Score=49.47  Aligned_cols=25  Identities=28%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..--|+++|++||||||+++.|.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999988643

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.93  E-value=0.00046  Score=51.43  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.93  E-value=0.00064  Score=48.81  Aligned_cols=27  Identities=19%  Similarity=0.217  Sum_probs=22.8

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ......|+|+|++||||||+++.|...
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            344578999999999999999999754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.93  E-value=0.00028  Score=51.71  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh-cC
Q 028381           16 KLLMIGDSGVGKSSLLLSFT-SD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~-~~   37 (210)
                      -++|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 54

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.93  E-value=0.00058  Score=52.24  Aligned_cols=24  Identities=46%  Similarity=0.401  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      .++++|++|||||||++.+.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999987654

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.92  E-value=0.00048  Score=49.77  Aligned_cols=21  Identities=14%  Similarity=0.359  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      +|+|.|++||||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.92  E-value=0.00034  Score=50.57  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++++|+.|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.0013  Score=47.87  Aligned_cols=89  Identities=15%  Similarity=0.115  Sum_probs=46.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEE-eCCCc-cc----c-ccchhhcccC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIW-DTAGQ-ER----F-RTLTSSYYRG   85 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~g~-~~----~-~~~~~~~~~~   85 (210)
                      ..+=|++-|+++.|||.|++++.+.........     ......-.+....+-|| |.-.. ..    | ..........
T Consensus        28 nkilvl~~~~~~~~~~~~~~~lf~~~~~~~~i~-----k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~v  102 (233)
T 3uc9_A           28 NKILVLSDHPHNFLKTQFLQDLFHCSSTGISIV-----KDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRNV  102 (233)
T ss_dssp             CEEEEEEEGGGHHHHHHHHHHHHCCCCCSSCEE-----EEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHHT
T ss_pred             CceEEEecCcccccHHHHHHHHhcccccccccc-----cCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHHh
Confidence            344455559999999999999997743221111     11222223344455554 44321 11    0 0111111223


Q ss_pred             ccEEEEEEECCCcccHHHHHH
Q 028381           86 AQGIIMVYDVTRRDTFTNLSD  106 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~  106 (210)
                      .+++|+|++.......+.+.+
T Consensus       103 iggII~~f~~p~~~~~~~i~~  123 (233)
T 3uc9_A          103 MAGIILITDIRQTKPQELLHQ  123 (233)
T ss_dssp             EEEEEEEECHHHHCGGGTHHH
T ss_pred             cceEEEEEeCCCcchHHHHHH
Confidence            588999998666555544433

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.92  E-value=0.00048  Score=51.74  Aligned_cols=23  Identities=39%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999998653

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.92  E-value=0.00055  Score=48.26  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..|+|.|++||||||+++.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998853

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.91  E-value=0.00055  Score=48.80  Aligned_cols=21  Identities=29%  Similarity=0.578  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999998864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.91  E-value=0.00058  Score=48.25  Aligned_cols=23  Identities=17%  Similarity=0.379  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ...|++.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.89  E-value=0.00048  Score=50.11  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      =-++|+|++|||||||++.+.+.
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.89  E-value=0.00056  Score=49.65  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ...|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998853

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.88  E-value=0.00065  Score=48.01  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ...|+|.|.+||||||+.+.|.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999885

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.88  E-value=0.00061  Score=51.05  Aligned_cols=23  Identities=30%  Similarity=0.596  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999764

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.87  E-value=0.00053  Score=47.85  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998853

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.86  E-value=0.0003  Score=50.06  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ....|++.|++||||||+.+.|..
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.86  E-value=0.00032  Score=49.06  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++|+|++|||||||++.|.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999998854

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.86  E-value=0.00054  Score=51.66  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.85  E-value=0.00059  Score=49.78  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ...|+|.|++||||||+++.|.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999885

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.85  E-value=0.00067  Score=47.85  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..+|+++|++||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999988643

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.84  E-value=0.00057  Score=53.69  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-+++|+|++|||||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999999865

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.82  E-value=0.00079  Score=48.27  Aligned_cols=22  Identities=27%  Similarity=0.274  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..|+|.|++||||||+++.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.82  E-value=0.00093  Score=47.07  Aligned_cols=25  Identities=16%  Similarity=0.314  Sum_probs=21.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .....|++.|.+||||||+++.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.82  E-value=0.00073  Score=49.96  Aligned_cols=25  Identities=20%  Similarity=0.207  Sum_probs=21.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .....|+|+|+.|||||||++.|.+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998875

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.81  E-value=0.00071  Score=49.18  Aligned_cols=20  Identities=20%  Similarity=0.469  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      -|+|+|+|||||+|....|.
T Consensus        31 iI~llGpPGsGKgTqa~~L~   50 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLV   50 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            36678999999999999886

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.80  E-value=0.00053  Score=52.53  Aligned_cols=22  Identities=36%  Similarity=0.526  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++|+|++|||||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5899999999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.79  E-value=0.00079  Score=50.01  Aligned_cols=27  Identities=22%  Similarity=0.202  Sum_probs=21.4

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      +....+.|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            344568899999999999999998854

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.79  E-value=0.00073  Score=51.30  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=21.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ....-|++.|++||||||+++.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999964

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.79  E-value=0.00072  Score=49.02  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ...|+|.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998853

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.79  E-value=0.0026  Score=51.16  Aligned_cols=63  Identities=22%  Similarity=0.263  Sum_probs=40.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc------------------CCCC---CCC-CCceeeeEEEEEEE---CCeEEEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTS------------------DNFE---ELS-PTIGVDFKVKYVDV---GGKKLKLAI   66 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~------------------~~~~---~~~-~~~~~~~~~~~~~~---~~~~~~~~l   66 (210)
                      ....=|.|+|+.++|||+|+|.|+.                  ..|.   ... .|.|...+...+.+   ++....+.+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll  144 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred             CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence            3556677999999999999995541                  1221   111 15555444333322   667789999


Q ss_pred             EeCCCccc
Q 028381           67 WDTAGQER   74 (210)
Q Consensus        67 ~D~~g~~~   74 (210)
                      +||.|...
T Consensus       145 lDTEG~~d  152 (457)
T 4ido_A          145 MDTQGTFD  152 (457)
T ss_dssp             EEECCBTC
T ss_pred             EeccCCCC
Confidence            99999543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.78  E-value=0.00085  Score=46.33  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.78  E-value=0.00069  Score=53.01  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      -++++|++|||||||++.+.+-..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            368999999999999999987643

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.78  E-value=0.0007  Score=50.22  Aligned_cols=21  Identities=33%  Similarity=0.708  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.77  E-value=0.0008  Score=49.04  Aligned_cols=20  Identities=25%  Similarity=0.406  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      .|+|.|++||||||+++.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999885

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.77  E-value=0.00061  Score=49.51  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ...|+|.|++||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999885

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.77  E-value=0.00078  Score=51.22  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|+.|||||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999998653

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.76  E-value=0.00078  Score=47.18  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ...|++.|++||||||+.+.|.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHH
Confidence            4568999999999999999986

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.74  E-value=0.00099  Score=51.35  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=22.1

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ....+-|+|.|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988854

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.73  E-value=0.00082  Score=52.52  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.72  E-value=0.00048  Score=46.99  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++++|++|+|||||++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.72  E-value=0.001  Score=46.53  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -.+++.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988643

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.71  E-value=0.00078  Score=52.73  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++|+|++|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999998753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.71  E-value=0.00088  Score=52.49  Aligned_cols=23  Identities=35%  Similarity=0.405  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            46899999999999999998754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.71  E-value=0.00087  Score=52.49  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            47899999999999999998754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.70  E-value=0.0011  Score=46.63  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..|+|.|++||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998863

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.70  E-value=0.0011  Score=50.42  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=21.5

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHh
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ......|+|.|++|||||||++.|.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3456889999999999999998775

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.70  E-value=0.00095  Score=47.62  Aligned_cols=24  Identities=13%  Similarity=0.144  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ...|+|.|++||||||+++.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999999754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.70  E-value=0.0009  Score=52.75  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            47899999999999999998764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.70  E-value=0.00091  Score=52.44  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            46899999999999999998754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.70  E-value=0.0011  Score=47.22  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=22.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ....|+|.|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4568999999999999999999764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.69  E-value=0.001  Score=47.11  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ...|+|.|++||||||+.+.|.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999886

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.68  E-value=0.00095  Score=49.69  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999863

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.67  E-value=0.0011  Score=46.20  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..+.|+|++|||||||+.+|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.67  E-value=0.0011  Score=48.68  Aligned_cols=24  Identities=17%  Similarity=0.347  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ...+|+|.|++||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999998863

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.67  E-value=0.0011  Score=50.74  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=22.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .....|+|+|++|||||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            44567999999999999999998763

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.66  E-value=0.00093  Score=51.16  Aligned_cols=84  Identities=14%  Similarity=0.060  Sum_probs=46.2

Q ss_pred             EEEEEeCCCcccccc------------chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028381           63 KLAIWDTAGQERFRT------------LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  130 (210)
                      .+.++|++|......            +.+......+.++++.|+.........   ...+...    .+. .++++||.
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~---~~~~~~~----~~~-t~iivTh~  257 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ---AKKFHEA----VGL-TGVIVTKL  257 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH---HHHHHHH----HCC-SEEEEECT
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHH---HHHHHHH----cCC-cEEEEECC
Confidence            356789998532211            112234457788889998765433222   1111111    122 37889999


Q ss_pred             CCCCCceecHHHHHHHHHHhCCeEEEEc
Q 028381          131 DKESERVVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus       131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (210)
                      |....    .-.+..+....+.|+.++.
T Consensus       258 d~~a~----gg~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          258 DGTAK----GGVLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             TSSCC----CTTHHHHHHHHCCCEEEEE
T ss_pred             ccccc----ccHHHHHHHHHCCCeEEEe
Confidence            86422    1234456667788876665

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.65  E-value=0.001  Score=52.38  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46899999999999999998653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.65  E-value=0.00099  Score=52.45  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            47899999999999999998764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.65  E-value=0.0011  Score=45.99  Aligned_cols=21  Identities=19%  Similarity=0.482  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998863

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.65  E-value=0.00073  Score=50.25  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=22.1

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ......|+++|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34557899999999999999999864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.65  E-value=0.0012  Score=47.18  Aligned_cols=25  Identities=24%  Similarity=0.154  Sum_probs=21.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ....-|+++|++|||||||++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.63  E-value=0.00045  Score=49.74  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999863

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.63  E-value=0.0012  Score=46.68  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.63  E-value=0.00098  Score=51.69  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.63  E-value=0.001  Score=50.86  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..--++++|++||||||+++.+.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            445789999999999999998864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.62  E-value=0.0011  Score=47.61  Aligned_cols=23  Identities=17%  Similarity=0.134  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ...|+|.|.+||||||+++.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999863

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.62  E-value=0.001  Score=51.48  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++|+|++|||||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.62  E-value=0.0011  Score=46.50  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .|++.|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998853

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.62  E-value=0.0007  Score=47.42  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=16.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999863

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.61  E-value=0.00082  Score=52.42  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999998654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.61  E-value=0.0013  Score=49.12  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..|++.|.+||||||+++.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999874

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.61  E-value=0.0011  Score=49.96  Aligned_cols=21  Identities=33%  Similarity=0.708  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      ++++|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.60  E-value=0.0012  Score=47.33  Aligned_cols=23  Identities=17%  Similarity=0.023  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ...|+|.|.+||||||+++.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999863

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.60  E-value=0.0014  Score=45.34  Aligned_cols=21  Identities=43%  Similarity=0.531  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028381           15 FKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~   35 (210)
                      -.|++.|.+||||||+.+.|.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            478999999999999999885

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.60  E-value=0.0013  Score=48.92  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028381           15 FKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~   35 (210)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999987

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.58  E-value=0.0011  Score=52.00  Aligned_cols=23  Identities=22%  Similarity=0.577  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -.++|+|++|||||||++.+.+.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            47899999999999999999865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.58  E-value=0.0012  Score=52.08  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      -.++|+|++||||||+++.+.+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999875

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.57  E-value=0.0015  Score=47.17  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ...|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.52  E-value=0.0013  Score=52.05  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++++|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999999864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.52  E-value=0.0013  Score=47.69  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -++++|++|+|||||++.+.+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4788999999999999998743

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.52  E-value=0.0014  Score=48.75  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.+++.|++|+|||+|++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999999753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.50  E-value=0.0013  Score=52.61  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -++|+|++|||||||++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.50  E-value=0.0018  Score=47.42  Aligned_cols=26  Identities=31%  Similarity=0.502  Sum_probs=22.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ....-|+|.|+.||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            44567999999999999999999865

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.49  E-value=0.0013  Score=45.95  Aligned_cols=24  Identities=25%  Similarity=0.547  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.++|.|++|+|||+|++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346799999999999999888643

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.48  E-value=0.00081  Score=52.56  Aligned_cols=23  Identities=22%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.48  E-value=0.0015  Score=45.77  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -.+|+|+.|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.48  E-value=0.0014  Score=53.76  Aligned_cols=24  Identities=21%  Similarity=0.404  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -.++|+|++||||||+++.+.+--
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358999999999999999998643

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.48  E-value=0.0016  Score=45.52  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..|++.|.+||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998865

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.48  E-value=0.0016  Score=47.75  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ..+.|+|.|++||||||+.+.|.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999999886

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.45  E-value=0.0018  Score=47.13  Aligned_cols=23  Identities=13%  Similarity=0.296  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .-.++|.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.44  E-value=0.0018  Score=46.13  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -.+++.|++|+|||+|++.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988753

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.43  E-value=0.0019  Score=48.88  Aligned_cols=24  Identities=38%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ...+.|+|.|++||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            346789999999999999999986

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.42  E-value=0.0029  Score=42.73  Aligned_cols=26  Identities=12%  Similarity=0.114  Sum_probs=21.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      ....|++.|++|+|||++++.+....
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            34569999999999999999997653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.40  E-value=0.0017  Score=50.81  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..--++++|++||||||+++.|.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            445789999999999999998864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.38  E-value=0.0015  Score=52.93  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      =.++|+|+.|||||||++.|.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            36899999999999999998754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.35  E-value=0.0018  Score=49.17  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.34  E-value=0.0019  Score=48.03  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      -.|+++|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998853

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.34  E-value=0.0021  Score=46.29  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=20.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ....|++.|++||||||+++.|..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999998864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.33  E-value=0.0021  Score=50.14  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      =+++++|++|+|||||++.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999999774

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.33  E-value=0.0019  Score=52.52  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=20.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..--++|+|++|||||||++.|.+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            345689999999999999998863

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.32  E-value=0.0021  Score=46.31  Aligned_cols=21  Identities=24%  Similarity=0.221  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999987

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.32  E-value=0.0022  Score=46.96  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ...-|+|.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4467899999999999999998743

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.30  E-value=0.0022  Score=46.99  Aligned_cols=22  Identities=18%  Similarity=0.283  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5789999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.30  E-value=0.0014  Score=50.47  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++|+|+.|||||||++.+.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            46788999999999999999653

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.30  E-value=0.0018  Score=46.48  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .+++.||||+|||+++..+..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.29  E-value=0.0022  Score=48.74  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999874

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.28  E-value=0.0029  Score=45.01  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .-..|++.|.+||||||+.+.|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.27  E-value=0.0017  Score=48.46  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=21.3

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ......|+|.|..||||||+++.|..
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998874

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.26  E-value=0.0022  Score=48.62  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.+++.|++|+|||++++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999999753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.24  E-value=0.0023  Score=48.18  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..-.+++.|++|+|||+|++.+...
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3456999999999999999999754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.22  E-value=0.003  Score=42.97  Aligned_cols=19  Identities=53%  Similarity=0.711  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028381           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~   35 (210)
                      .+|+|+.|+|||||+..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4688999999999998875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.22  E-value=0.0026  Score=47.19  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..-.|++.|++|+|||++++.+..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999875

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.22  E-value=0.0027  Score=48.25  Aligned_cols=26  Identities=23%  Similarity=0.112  Sum_probs=21.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..+.-+++.|+||+|||+|++.+...
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34456788899999999999998743

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.21  E-value=0.0024  Score=50.31  Aligned_cols=24  Identities=21%  Similarity=0.181  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..-.++++|++|+|||||++.+.+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            334789999999999999999985

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.20  E-value=0.0028  Score=45.37  Aligned_cols=21  Identities=29%  Similarity=0.596  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999998864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.18  E-value=0.0025  Score=48.58  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.|++.|++|+|||+|++.+...
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346899999999999999999854

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.18  E-value=0.0029  Score=45.92  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.17  E-value=0.014  Score=45.76  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=17.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      .+ .+|+|+.|+|||||++.++
T Consensus        24 g~-~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GI-TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EE-EEEECCTTSSHHHHHHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHH
Confidence            35 4589999999999999876

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.17  E-value=0.0033  Score=45.99  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=19.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      -.++.|+|+|||||||+...|.
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~   29 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIK   29 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHH
Confidence            4689999999999999999885

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.08  E-value=0.0031  Score=51.29  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      =-++|+|++|||||||++.+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            3578999999999999998864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.08  E-value=0.0049  Score=50.99  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|+.|||||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.07  E-value=0.0031  Score=48.54  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.+++.|++|+|||+|++.+...
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346899999999999999998753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.07  E-value=0.0021  Score=43.26  Aligned_cols=24  Identities=13%  Similarity=0.274  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ...|++.|++|+|||++++.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            346999999999999999988754

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.06  E-value=0.0039  Score=47.47  Aligned_cols=23  Identities=22%  Similarity=0.514  Sum_probs=19.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ....++|.|++|+|||++++.+.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999998664

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.06  E-value=0.0047  Score=46.21  Aligned_cols=26  Identities=23%  Similarity=0.379  Sum_probs=22.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .....+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            45568999999999999999998754

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.05  E-value=0.0034  Score=50.51  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      =+++++|++|+|||||++.+.+..
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            378999999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.04  E-value=0.0035  Score=52.38  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999998653

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.03  E-value=0.0045  Score=49.47  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ...-|+++|++||||||+.+.|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.02  E-value=0.0047  Score=51.03  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|+.|+|||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.99  E-value=0.0036  Score=47.15  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -++|+|++|+|||||+..+.+
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999998874

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.0037  Score=50.07  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..--|++.||||+|||+|++.+.+.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3446999999999999999999854

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.96  E-value=0.004  Score=52.02  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999998654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.96  E-value=0.0038  Score=50.07  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=22.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..+-.|++.||||+|||+|++.+.+.
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence            34567999999999999999999854

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.96  E-value=0.004  Score=47.28  Aligned_cols=23  Identities=35%  Similarity=0.596  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ...+++.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.96  E-value=0.0054  Score=51.44  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999998754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.94  E-value=0.0045  Score=45.34  Aligned_cols=26  Identities=15%  Similarity=0.148  Sum_probs=21.5

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ......|+|+|++||||||+.+.|..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34556899999999999999998864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.93  E-value=0.0048  Score=43.97  Aligned_cols=21  Identities=29%  Similarity=0.302  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.91  E-value=0.0042  Score=47.90  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.|++.|+||+|||+|++.+...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            357999999999999999999854

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.0042  Score=49.85  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=22.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..+--|++.||||+|||+|++.+.+.
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            34567999999999999999999854

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.88  E-value=0.0035  Score=48.72  Aligned_cols=20  Identities=30%  Similarity=0.600  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028381           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~   36 (210)
                      ++|.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.87  E-value=0.0043  Score=47.27  Aligned_cols=86  Identities=13%  Similarity=0.089  Sum_probs=47.8

Q ss_pred             EEEEEEEeCCCccccccc----hhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028381           61 KLKLAIWDTAGQERFRTL----TSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (210)
                      .+.+.++||+|.......    ....+.  ..+.+++|+|++..  ...+.. +...+.    ..+. .-+|.||.|...
T Consensus       182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~-~~~~~~----~l~~-~giVltk~D~~~  253 (296)
T 2px0_A          182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKH-IVKRFS----SVPV-NQYIFTKIDETT  253 (296)
T ss_dssp             GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHH-HTTTTS----SSCC-CEEEEECTTTCS
T ss_pred             CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHH-HHHHHh----cCCC-CEEEEeCCCccc
Confidence            356889999996543321    112232  36788999987743  233332 222111    1122 346679999753


Q ss_pred             CceecHHHHHHHHHHhCCeEEEEc
Q 028381          135 ERVVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~S  158 (210)
                      .    ...+.......+.|+..++
T Consensus       254 ~----~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          254 S----LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             C----CHHHHHHHHTCSCCCSEEC
T ss_pred             c----hhHHHHHHHHHCcCEEEEE
Confidence            2    1245666777888865554

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.86  E-value=0.0045  Score=51.18  Aligned_cols=24  Identities=17%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      .++|+|+.|||||||++.+.+...
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999997543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.86  E-value=0.0042  Score=48.53  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.++|.|++|+|||||++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999998753

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.86  E-value=0.0043  Score=48.06  Aligned_cols=22  Identities=32%  Similarity=0.688  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++|.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988754

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.85  E-value=0.0054  Score=43.09  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      ++|+|.++||||+|...|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999854

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.85  E-value=0.006  Score=46.40  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -.++|.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999988753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.84  E-value=0.005  Score=45.08  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.84  E-value=0.0052  Score=50.79  Aligned_cols=23  Identities=17%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++|+|+.|+|||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.83  E-value=0.0051  Score=47.32  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ...|++.|+||+|||+|++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999999753

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.0046  Score=49.01  Aligned_cols=26  Identities=19%  Similarity=0.293  Sum_probs=22.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..+--|++.||||+|||+|++.+.+.
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence            34457999999999999999999754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.80  E-value=0.0072  Score=50.68  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|+.|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.80  E-value=0.0035  Score=52.32  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            67899999999999999888653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.78  E-value=0.0056  Score=51.34  Aligned_cols=23  Identities=17%  Similarity=0.478  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|+.|+|||||++.+.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.76  E-value=0.0055  Score=47.16  Aligned_cols=22  Identities=18%  Similarity=0.539  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998863

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.76  E-value=0.0054  Score=46.95  Aligned_cols=87  Identities=17%  Similarity=0.126  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCccccccch-------hhc-----ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028381           62 LKLAIWDTAGQERFRTLT-------SSY-----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (210)
                      +.+.++|+||........       ...     -...+.+++|+|+...  .+.+.. .. .+..   ..++ .-+|.||
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~-~~~~---~~~i-~gvVlTk  258 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AK-IFKE---AVNV-TGIILTK  258 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HH-HHHH---HSCC-CEEEEEC
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HH-HHHh---cCCC-CEEEEeC
Confidence            357889999953322111       111     1247889999998733  222222 21 1221   1222 3567899


Q ss_pred             CCCCCCceecHHHHHHHHHHhCCeEEEEccC
Q 028381          130 VDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus       130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (210)
                      .|....    .-.+..+....+.|+.++..-
T Consensus       259 ~D~~~~----gG~~l~~~~~~~~Pi~~i~~G  285 (306)
T 1vma_A          259 LDGTAK----GGITLAIARELGIPIKFIGVG  285 (306)
T ss_dssp             GGGCSC----TTHHHHHHHHHCCCEEEEECS
T ss_pred             CCCccc----hHHHHHHHHHHCCCEEEEeCC
Confidence            996322    223677778889997777553

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.76  E-value=0.0056  Score=47.99  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.75  E-value=0.0049  Score=43.99  Aligned_cols=23  Identities=43%  Similarity=0.694  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..|+|+|++|+|||+|...|...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.71  E-value=0.0041  Score=52.14  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68999999999999999998653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.70  E-value=0.0059  Score=47.34  Aligned_cols=22  Identities=23%  Similarity=0.594  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .-|+|.|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988863

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.70  E-value=0.0073  Score=47.05  Aligned_cols=23  Identities=26%  Similarity=0.588  Sum_probs=19.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ...+|+++|++|+||||+.+.|.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHH
Confidence            34689999999999999998764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.69  E-value=0.0055  Score=47.82  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      --+.|+|++|+|||||+..+...
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999865

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.0051  Score=47.32  Aligned_cols=26  Identities=8%  Similarity=-0.004  Sum_probs=21.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ...-.++|.|+||+|||++++.+...
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999999998743

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.66  E-value=0.0058  Score=47.30  Aligned_cols=21  Identities=38%  Similarity=0.762  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988643

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.66  E-value=0.0063  Score=47.49  Aligned_cols=22  Identities=23%  Similarity=0.576  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      -.++|.|+||+|||++++.+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.66  E-value=0.0024  Score=47.61  Aligned_cols=21  Identities=29%  Similarity=0.566  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .+++.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999999874

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.65  E-value=0.0067  Score=46.44  Aligned_cols=23  Identities=39%  Similarity=0.576  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.0063  Score=51.03  Aligned_cols=23  Identities=30%  Similarity=0.598  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~~   39 (210)
                      ++++|+.|+|||||++.+.+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            78999999999999999987643

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.64  E-value=0.0048  Score=51.58  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999988643

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.63  E-value=0.0062  Score=47.61  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.|++.|++|+|||+|++.+...
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999998754

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.57  E-value=0.0072  Score=44.97  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      ...|+|.|++|+|||++++.+....
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhc
Confidence            3579999999999999999998553

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.56  E-value=0.006  Score=49.55  Aligned_cols=22  Identities=27%  Similarity=0.578  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      -+++++|+||+|||++++.+..
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.56  E-value=0.007  Score=46.72  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ...|++.|++|+|||+|++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999999644

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.55  E-value=0.0068  Score=48.41  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=22.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ...--|++.||||+|||+|++.+.+.
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHH
Confidence            34567999999999999999999854

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.55  E-value=0.0072  Score=47.29  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ....|++.|+||+|||++++.+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998743

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.54  E-value=0.0065  Score=50.32  Aligned_cols=23  Identities=39%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -.++++|++|+|||||++.+.+.
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999988643

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.53  E-value=0.0077  Score=46.14  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -|+|+||+|||||||...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            4789999999999999999743

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.53  E-value=0.0073  Score=47.48  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ...+++.|++|+|||++++.+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998743

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.52  E-value=0.0085  Score=42.93  Aligned_cols=19  Identities=53%  Similarity=0.711  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028381           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~   35 (210)
                      .+|+|+.|+|||||+..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4677999999999998874

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.52  E-value=0.0068  Score=48.82  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .-.++|.|++|+|||+|++.+.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998874

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.52  E-value=0.0068  Score=49.58  Aligned_cols=22  Identities=32%  Similarity=0.659  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -|+++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.51  E-value=0.0062  Score=47.65  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..-.++|.|++|+|||++++.+..
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998874

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.51  E-value=0.0072  Score=49.15  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -.|+++|+||+|||+|++.+.+.
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999999863

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.48  E-value=0.0079  Score=46.54  Aligned_cols=21  Identities=33%  Similarity=0.700  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -|+|+|++|||||||...|..
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999874

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.48  E-value=0.0077  Score=47.09  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ....|+|.|++|+|||+|++.+...
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999753

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.46  E-value=0.006  Score=47.01  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .+++.|+||+|||+|++.+..
T Consensus        48 ~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            699999999999999999864

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.41  E-value=0.0079  Score=43.32  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999988854

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=95.40  E-value=0.011  Score=46.99  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=20.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHH
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSF   34 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l   34 (210)
                      .+.+|++++|...|||||+++.+
T Consensus        38 ~~~~klLLLG~geSGKSTi~KQm   60 (402)
T 1azs_C           38 RATHRLLLLGAGESGKSTIVKQM   60 (402)
T ss_dssp             TTEEEEEEEESTTSSHHHHHHHH
T ss_pred             hccceEEEecCCCCchhhHHHHH
Confidence            46799999999999999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	7e-54
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-52
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-50
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	9e-50
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	7e-49
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-48
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	8e-48
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-47
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-45
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-45
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	7e-45
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	6e-41
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-40
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	8e-39
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	6e-38
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-37
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	3e-37
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	4e-36
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	6e-36
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	7e-36
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	8e-35
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-34
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	7e-34
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	8e-34
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-33
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	8e-33
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-32
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-32
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-32
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-32
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-32
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-31
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-31
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	5e-31
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-30
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-30
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	9e-30
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-28
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-28
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-28
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-27
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-27
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-27
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-27
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-27
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	3e-26
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	3e-24
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-23
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-23
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-22
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	5e-22
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-20
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-18
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-18
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	9e-17
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-16
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-08
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-08
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-07
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	3e-06
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	4e-06
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	3e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	6e-05
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	6e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	2e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	3e-04
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	7e-04

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  168 bits (425), Expect = 7e-54
 Identities = 78/170 (45%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
           + +DYLFKLL+IGDSGVGK+ +L  F+ D F      TIG+DFK++ +++ GK++KL IW
Sbjct: 1   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ +           + D  K+++G
Sbjct: 61  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI--RNIEEHASADVEKMILG 118

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           NK D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I 
Sbjct: 119 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 168

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (413), Expect = 5e-52
 Identities = 67/169 (39%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           ++D+LFK+++IG++GVGK+ L+  FT   F      TIGVDF +K V++ G+K+KL IWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFR++T SYYR A  +I+ YD+T  ++F  L +           +   I +LVGN
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWL--REIEQYASNKVITVLVGN 118

Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           K+D    R V+++    F+      ++E SAK   NV++ F +L  +++
Sbjct: 119 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 167

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  158 bits (399), Expect = 6e-50
 Identities = 87/166 (52%), Positives = 108/166 (65%), Gaps = 4/166 (2%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ GKK+KL IWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           ERFRT+T++YYRGA GII+VYD+T   TFTN+   +  +      N +   LLVGNK D 
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWF--KTVNEHANDEAQLLLVGNKSDM 119

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           E  RVVT  +G   A+E G  FIE SAK   NV + F  L   I +
Sbjct: 120 E-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  158 bits (400), Expect = 9e-50
 Identities = 86/185 (46%), Positives = 113/185 (61%), Gaps = 3/185 (1%)

Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IG+SGVGKS LLL F+ D +  +   TIGVDFK+K V++ GK +KL IWD
Sbjct: 2   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +     +           +KLLVGN
Sbjct: 62  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA--TSTVLKLLVGN 119

Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSK 188
           K D + +RVV       FA      F+E SA    NV+  F  +  +I ++ S       
Sbjct: 120 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 179

Query: 189 GLKKN 193
             KK 
Sbjct: 180 TQKKE 184

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (392), Expect = 7e-49
 Identities = 71/169 (42%), Positives = 107/169 (63%), Gaps = 4/169 (2%)

Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
            +D  FK++++GDSGVGK+ LL+ F    F       T+G+DF+ K +DV G K+KL +W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFR++T +YYR A  ++++YDVT + +F N+     +  +      D   +L+G
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA--QHDVALMLLG 119

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NKVD   ERVV +++G   A+EYG  F+E SAKT +NV   F  +  ++
Sbjct: 120 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (391), Expect = 1e-48
 Identities = 99/177 (55%), Positives = 118/177 (66%), Gaps = 5/177 (2%)

Query: 10  EFDYL--FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAI 66
           + D L   K+L+IG+SGVGKSSLLL FT D F  EL+ TIGVDFKVK + V G K KLAI
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 67  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
           WDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L +   +     + N      ++
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN--ML 118

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
                 +  R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L 
Sbjct: 119 VGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLW 175

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  152 bits (385), Expect = 8e-48
 Identities = 78/169 (46%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           FDY+FK+L+IG+S VGK+S L  +  D+F      T+G+DFKVK +    K++KL IWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQER+RT+T++YYRGA G I++YD+T  ++F  + D          +  +   LLVGNK
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS--TQIKTYSWDNAQVLLVGNK 119

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
            D E ERVV+ + G   A   G  F E SAK  +NV+Q FE LV  I +
Sbjct: 120 CDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (383), Expect = 1e-47
 Identities = 84/167 (50%), Positives = 110/167 (65%), Gaps = 3/167 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           + Y+FK ++IGD GVGKS LL  FT   F  +   TIGV+F  + ++V G+K+KL IWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQERFR +T SYYRGA G +MVYD+TRR T+ +LS       +   TN + + +L+GNK
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN--LTNPNTVIILIGNK 118

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI
Sbjct: 119 ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (371), Expect = 2e-45
 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 12/179 (6%)

Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGK-------- 60
           ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V    +        
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 61  --KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN 118
             K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ +  ++        
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 119 QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
              I L +GNK D   +R V +++    A +YG  + E SA T  NV++  E L+  I+
Sbjct: 121 NPDIVL-IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 178

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (368), Expect = 3e-45
 Identities = 78/169 (46%), Positives = 113/169 (66%), Gaps = 3/169 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           +D+LFK L+IG++G GKS LL  F    F ++ + TIGV+F  K ++VGGK +KL IWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQERFR++T SYYRGA G ++VYD+T R+T+  L++       L   +Q+ + +L GNK
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA--SQNIVIILCGNK 119

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
            D +++R VT  E   FA+E   +F+E SA T  NV++ F +   KIL+
Sbjct: 120 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (366), Expect = 7e-45
 Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           +DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+     KE+  ++ + + + +LVGNK
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHA-DSNIVIMLVGNK 118

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            D    R V   E   FA +    FIE SA    NV++ F+ ++ +I 
Sbjct: 119 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 166

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (339), Expect = 6e-41
 Identities = 60/168 (35%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           Y FK++++G+  VGK+SL+L +  + F ++   T+G  F  K +++GGK++ LAIWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERF  L   YYR + G I+VYD+T  D+F  + +   +         +    +VGNK+D
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR--KMLGNEICLCIVGNKID 119

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
            E ER V+ +E  ++A   G      SAK    +++ F +L  ++++T
Sbjct: 120 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 167

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 2e-40
 Identities = 82/166 (49%), Positives = 116/166 (69%), Gaps = 3/166 (1%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           YLFK ++IGD+GVGKS LLL FT   F      TIGV+F  + V++ GK++KL IWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QE FR++T SYYRGA G ++VYD+TRR+TF +L+    ++   +S++ + + +L+GNK D
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWL-EDARQHSSS-NMVIMLIGNKSD 119

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            ES R V ++EG  FARE+G +F+E SAKT  NV++ F     +I 
Sbjct: 120 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 165

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 8e-39
 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F      TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR+L  SY R +   ++VYD+T  ++F   +              D I +LVGNK D  
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT--ERGSDVIIMLVGNKTDLA 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            +R V+ +EG   A+E   +FIE SAK   NV+Q F  +   +
Sbjct: 119 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 6e-38
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 1/163 (0%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +K++++G  GVGKS+L + F +  F E       DF  K ++V      L I DTAG E+
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F ++   Y +  QG I+VY +  + +F ++  +   +I      +    +LVGNKVD ES
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMR-DQIIRVKRYEKVPVILVGNKVDLES 122

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           ER V+  EG   A E+GC F+E SAK++  V + F E+V ++ 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 1e-37
 Identities = 63/164 (38%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    +    +      + + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV--KELQRQASPNIVIALSGNKADLA 124

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+ 
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  125 bits (314), Expect = 3e-37
 Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 1/164 (0%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           L K++M+G  GVGKS+L L F  D F E       D   K V + G+++++ I DTAGQE
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D E
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLE 122

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I 
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 4e-36
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 15/179 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            K +++GD  VGK+ LL+S+T++ F         D     V V GK + L +WDTAGQE 
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L    Y      ++ + +    +F N+   W  E+  +  N     +LVG K+D   
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN--TPIILVGTKLDLRD 123

Query: 135 ERVVTKK------------EGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKILDTP 180
           ++   +K            +G+  A+E G   ++ECSA T+  ++  F+E +  +L  P
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 6e-36
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 16/187 (8%)

Query: 7   SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAI 66
           +      + K +++GD  VGK+ LL+S+ +D F E       D     V VGGK+  L +
Sbjct: 2   AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGL 61

Query: 67  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
           +DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y    +   LL+
Sbjct: 62  YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLI 119

Query: 127 GNKVDKESERV------------VTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELV 173
           G ++D   +              +  ++G   A+E G C ++ECSA T+  ++  F+E +
Sbjct: 120 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179

Query: 174 LKILDTP 180
           + IL TP
Sbjct: 180 IAIL-TP 185

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 7e-36
 Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 5/172 (2%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
             LFK++++GD GVGKSSL+  + ++ F  +L  TIGV+F  K ++V G  + + IWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC--IKLLVGN 128
           GQERFR+L + +YRG+   ++ + V    +F N    W KE   Y+  ++      ++  
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILG 122

Query: 129 KVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKILDT 179
                SER V+ +E   + R+ G   + E SAK   NV   FEE V ++L T
Sbjct: 123 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 174

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 8e-35
 Identities = 56/166 (33%), Positives = 78/166 (46%), Gaps = 1/166 (0%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
               KL+++G  GVGKS+L + F    F         D   K   V G   +L I DTAG
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QE F  +   Y R   G ++V+ +  R +F N       +I       D   +LVGNK D
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSF-NEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            ES+R V + E   F   +   + E SAK R+NV + FE+LV  + 
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 168

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 3e-34
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 2/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +KL+++G  GVGKS+L +    ++F +       D   K V + G+   L I DTAGQE 
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  +   Y R  +G + V+ +    +F +    + ++I     + D   +LVGNK D   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFED-IHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 7e-34
 Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 17/180 (9%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D     V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + V    +F N+ + W  EI           LLVG ++D  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCPKTPFLLVGTQIDLR 120

Query: 134 SERVV------------TKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKILDTP 180
            +               T +     AR+     ++ECSA T+  ++  F+E +L  L+ P
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (291), Expect = 8e-34
 Identities = 60/164 (36%), Positives = 87/164 (53%), Gaps = 6/164 (3%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           +FK+++IGDS VGK+ L   F +  F +    TIGVDF+ + VD+ G+++K+ +WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 73  ERFRTL-TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           ERFR      YYR    ++ VYD+T   +F +L     +E   +    D  ++LVGNK D
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWI-EECKQHLLANDIPRILVGNKCD 120

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTR---VNVQQCFEEL 172
             S   V       FA  +     E SAK      +V+  F  L
Sbjct: 121 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 3e-33
 Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++L+++G  GVGKS+L + F    F         D   K   +  +  +L I DTAGQE 
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +   Y R  +G ++V+ VT R +F  +   + ++I       +   +L+GNK D + 
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +R VT++EG   AR+    ++E SAK R+NV Q F ELV  I 
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (285), Expect = 8e-33
 Identities = 70/165 (42%), Positives = 95/165 (57%), Gaps = 6/165 (3%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++G++ VGKSS++L F S++F E   PTIG  F  + V +    +K  IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           F +L   YYR AQ  ++VYDVT+  +F        +       ++D I  LVGNK+D   
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELH--EQASKDIIIALVGNKIDMLQ 122

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +  ER V ++EG   A E G LF E SAKT  NV   F  +  KI
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (284), Expect = 1e-32
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 2/164 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +KL+++GD GVGKS+L + F    F         D  +K+ ++  +   L + DTAGQE 
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 64

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +   Y R   G ++VY VT + +F ++       + +       + +LV NKVD   
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM-ILVANKVDLMH 123

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTR-VNVQQCFEELVLKIL 177
            R VT+ +G   A +Y   +IE SAK   +NV + F +LV  I 
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 167

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 1e-32
 Identities = 63/163 (38%), Positives = 93/163 (57%), Gaps = 2/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +KL+++G  GVGKS+L + F    F E       D   K V+V  ++  L I DTAG E+
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +   Y +  QG  +VY +T + TF N      ++I      +D   +LVGNK D E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 135 ERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKI 176
           ERVV K++G N AR++  C F+E SAK+++NV + F +LV +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (282), Expect = 2e-32
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+ ++GD+GVGKSS++  F  D+F   ++PTIG  F  K V    +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR L   YYRG+   I+VYD+T+ +TF+ L +   +           +  + GNK D  
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR--QHGPPSIVVAIAGNKCDLT 122

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             R V +++  ++A     +F+E SAK  +N+ + F E+  +I
Sbjct: 123 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  112 bits (281), Expect = 2e-32
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 6/163 (3%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L             T           V  K +   +WD  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 57

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV--DKE 133
           R L   Y++  QG+I V D   R+      +   + +         + +    +   +  
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 117

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +   +T K G++  R          A +   + +  + L  ++
Sbjct: 118 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  112 bits (281), Expect = 4e-32
 Identities = 60/167 (35%), Positives = 97/167 (58%), Gaps = 3/167 (1%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GDSGVGK+SL+  + +  F  +   TIG DF  K V V  + + + IWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKV 130
           ERF++L  ++YRGA   ++V+DVT  +TF  L     + +   S    ++   +++GNK+
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           D E+ +V TK+       +    + E SAK  +NV+Q F+ +    L
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 168

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-31
 Identities = 47/159 (29%), Positives = 73/159 (45%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +++ + G  GVGKSSL+L F    F E       D   + +        L I DT G  +
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +           I+VY +T R +   L  ++ +  ++    +    +LVGNK D+  
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
            R V   E    AR + C F+E SAK   NV++ F+EL+
Sbjct: 123 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 161

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  110 bits (274), Expect = 3e-31
 Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 8/165 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G + +        K +K  +WD  GQ++
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 68

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE- 133
            R L   YY G QG+I V D   RD            I      +D I L+  NK D   
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ-ELHRIINDREMRDAIILIFANKQDLPD 127

Query: 134 --SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                 + +K G+   R+         A +   + +    L    
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 5e-31
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 15/176 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            KL+++GD   GK+ LL+  + D F E+      +  V  ++V GK+++LA+WDTAG E 
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I   VGNK D  +
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL--VGNKKDLRN 120

Query: 135 ERVVTKK------------EGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           +    ++            EG + A   G   ++ECSAKT+  V++ FE      L
Sbjct: 121 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 1e-30
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 4/163 (2%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++G+  VGKSS++  +    F ++   TIGVDF  + + V  + ++L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +T +YYRGAQ  ++V+  T R++F  +S    K     +   D    LV NK+D   
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV---VAEVGDIPTALVQNKIDLLD 120

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +  +  +E    A+     F   S K  +NV + F+ L  K L
Sbjct: 121 DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  108 bits (270), Expect = 2e-30
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 8/167 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++L++G  G GK+++L            PTIG + +     +  K LKL +WD  GQ  
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVET----LSYKNLKLNVWDLGGQTS 73

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE- 133
            R     YY     +I V D T +D  +  S      +      QD   L+  NK D+  
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 134 --SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
             S   V+K+  +   ++     +  SA     + +  + L+  I +
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (265), Expect = 9e-30
 Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 6/170 (3%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKL-KLAIWDTAG 71
           + K++++GDSGVGK+SL+  + +D + ++   TIG DF  K V V G K+  + +WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN--QDCIKLLVGNK 129
           QERF++L  ++YRGA   ++VYDVT   +F N+     + +   + N  +    +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 130 VDKESER-VVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKIL 177
           +D E  + +V++K     A+  G       SAK  +NV   FEE+    L
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (256), Expect = 2e-28
 Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 16/177 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           K++++GDS  GK++LL  F  D F E       +      ++  ++++L++WDT+G   +
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 63

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD---- 131
             +    Y  +  +++ +D++R +T  ++   W  EI  +    +   LLVG K D    
Sbjct: 64  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTD 121

Query: 132 --------KESERVVTKKEGINFAREYG-CLFIECSAKTRVN-VQQCFEELVLKILD 178
                      +  V+  +G N A++ G   +IECSA    N V+  F    L  ++
Sbjct: 122 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 3e-28
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 3/164 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            KL + G +GVGKS+L++ F +  F                 +  + + + I DTAGQE 
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
                  + R  +G ++VYD+T R +F  +  +    +D     ++   +LVGNK D + 
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLK-NILDEIKKPKNVTLILVGNKADLDH 120

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKT-RVNVQQCFEELVLKIL 177
            R V+ +EG   A E  C F ECSA T   N+ + F EL  ++ 
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 164

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (253), Expect = 4e-28
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 6/169 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD G GK++ +    +  F ++   T+GV+            +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY  AQ  I+++DVT R T+ N+ +      DL    ++   +L GNKVD +
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIVLCGNKVDIK 120

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +V  K   I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 121 DRKVKAKS--IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 1e-27
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 1/162 (0%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            K+ ++G   VGKSSL + F    F +       +   K + V G++  L + DTAGQ+ 
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +     +Y     G I+VY VT   +F  +  +  K +D          +LVGNK D   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD-MVGKVQIPIMLVGNKKDLHM 123

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ERV++ +EG   A  +   F+E SAK        F  ++L+ 
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  100 bits (250), Expect = 1e-27
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 8/165 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            +LLM+G    GK+++L  F  ++ +    TI          +  +  KL IWD  GQ+ 
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD----TISPTLGFNIKTLEHRGFKLNIWDVGGQKS 58

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
            R+   +Y+    G+I V D   R    +      + + +         L+  NK D   
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQREL-QSLLVEERLAGATLLIFANKQDLPG 117

Query: 135 ERVVTK---KEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                       ++  R +      CSA T  ++    + L+  I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  100 bits (250), Expect = 2e-27
 Identities = 34/165 (20%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            K++++G    GK+++L  F+ +     SPTIG + +   ++      +  +WD  GQE 
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 71

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE- 133
            R+  ++YY   + +I+V D T R+  +   +   K +      +  + L+  NK D + 
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL-LIFANKQDVKE 130

Query: 134 --SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             +   +++   +   +++      C A T   + Q  E ++ ++
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 2/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +K+L++G  GVGKS+L   F        +   G     + + V G++  L ++D   Q+ 
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
            R L           ++VY VT + +F   S++  +         D   +LVGNK D   
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRR-ARQTDDVPIILVGNKSDLVR 119

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            R V+  EG   A  + C FIE SA    NVQ  FE +V +I 
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 162

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 99.3 bits (246), Expect = 7e-27
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 8/168 (4%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           D   ++L++G    GK++LL    S++   ++PT G + K        +  KL +WD  G
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS----QGFKLNVWDIGG 69

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           Q + R    SY+     +I V D   R  F   +     E+           L+  NK D
Sbjct: 70  QRKIRPYWRSYFENTDILIYVIDSADRKRFEE-TGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 132 ---KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                    + +   ++  R+       CSA T   VQ     +   +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (241), Expect = 3e-26
 Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 2/168 (1%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTS--DNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           +  +++++IG+ GVGKS+L   F    D+ +     +G D   + + V G+   + + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
              +        +        ++            +     ++      +D   +LVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            D    R V+  EG   A  + C FIE SA  + NV++ FE +V ++ 
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR 168

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.1 bits (227), Expect = 3e-24
 Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 15/168 (8%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           KLL +G    GK++LL    +D    L PT          ++    +K   +D  G  + 
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWH----PTSEELAIGNIKFTTFDLGGHIQA 57

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135
           R L   Y+    GI+ + D    + F          +   +  +D   +++GNK+D  + 
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 136 RVVTK----------KEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
               +                  +       CS   R    + F+ L 
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 1e-23
 Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 4/164 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            +L ++GD+  GKSSL+  F + +++ L  T    +K K + V G+   + I + AG   
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLVDGQTHLVLIREEAGAPD 64

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
            +    +       +  + D       + L    +              +   +++   S
Sbjct: 65  AKFSGWADA--VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS 122

Query: 135 ERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQCFEELVLKIL 177
            RVV          +   C + E  A   +NV + F+E+  K++
Sbjct: 123 PRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV 166

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 8e-23
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++L++G  G GK+++L            PTIG + +        K LK  +WD  G   
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVT----YKNLKFQVWDLGGLTS 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL--VGNKVDK 132
            R     YY     +I V D   RD            ++     +  + +     +    
Sbjct: 62  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 121

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
            +   +    G+   ++      + SA     + +  E LV  +  
Sbjct: 122 MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 86.7 bits (213), Expect = 3e-22
 Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 9/163 (5%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            +L ++G    GK++ +    S  F E++ PT           +    + + +WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPT----VGFNMRKITKGNVTIKLWDIGGQP 58

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR++   Y RG   I+ + D   ++     S      +      Q    L++GNK D  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEA-SKNELHNLLDKPQLQGIPVLVLGNKRDLP 117

Query: 134 S---ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
               E+ + +K  ++  ++        S K + N+    + L+
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.5 bits (216), Expect = 5e-22
 Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 17/180 (9%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           Q +    +LL++G    GKS+++      +      T G+            K+   ++D
Sbjct: 1   QVYRATHRLLLLGAGESGKSTIVKQMRILHV---VLTSGIFET----KFQVDKVNFHMFD 53

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL---------SDVWAKEIDLYSTNQ 119
             GQ   R      +     II V   +  +              +    K I      +
Sbjct: 54  VGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 113

Query: 120 DCIKLLVGNKVDKESERVVTKKEGI-NFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
               +L  NK D  +E+V+  K  I ++  E+        A                I D
Sbjct: 114 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRD 173

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.7 bits (203), Expect = 3e-20
 Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 40/198 (20%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            KLL++G    GKS+ +      +   + PT G+      +     +    + D  GQ  
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSGV-PTTGIIEYPFDLQSVIFR----MVDVGGQRS 57

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNL---------SDVWAKEIDLYSTNQDCIKLL 125
            R      +     I+ +  ++  D              S    + I  Y   Q+   +L
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117

Query: 126 VGNKVDKESERVVTKKEGINFAREYG--------------------------CLFIECSA 159
             NK D   E+++       F    G                                 A
Sbjct: 118 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCA 177

Query: 160 KTRVNVQQCFEELVLKIL 177
               N++  F  +   IL
Sbjct: 178 TDTENIRFVFAAVKDTIL 195

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.0 bits (191), Expect = 1e-18
 Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 17/168 (10%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           L K+L++G    GKS+ L      + ++  PT G+       D   K +   + D  GQ 
Sbjct: 2   LVKILLLGAGESGKSTFLKQMRIIHGQD--PTKGIHEY----DFEIKNVPFKMVDVGGQR 55

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL---------SDVWAKEIDLYSTNQDCIKL 124
             R      +     I+ +   +  D              S    + I       +   +
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
           L  NK D   E+V        F    G        +    + +CF   
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK--FLVECFRGK 161

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 77.0 bits (188), Expect = 3e-18
 Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 20/177 (11%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            KL+ +G    GK++LL     D   +  PT+         ++    +    +D  G  +
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH----PTSEELTIAGMTFTTFDLGGHIQ 69

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
            R +  +Y     GI+ + D    +      +     +    T  +   L++GNK+D+  
Sbjct: 70  ARRVWKNYLPAINGIVFLVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE 128

Query: 135 ERVVTK---------------KEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                +                  +            CS   R    + F  +   I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.1 bits (178), Expect = 9e-17
 Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 10/182 (5%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
            +L +G    GK+ L +   +  + +   +I     +  V+         I     +   
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI--DLYSTNQDCIKLLVGNKVDKE 133
             L   +   A+ ++ V D             +  ++  D  +       L+  NK D  
Sbjct: 62  FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121

Query: 134 SERVVT------KKE--GINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAE 185
             +         +KE   +   R      ++ S+     + +  +E     L       E
Sbjct: 122 MAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLE 181

Query: 186 GS 187
            S
Sbjct: 182 CS 183

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.3 bits (176), Expect = 2e-16
 Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 43/198 (21%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            KLL++G    GKS+++      +        G    +       K L   ++D  GQ  
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE----AGTG----IVETHFTFKDLHFKMFDVGGQRS 54

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY---------STNQDCIKLL 125
            R      + G   II    ++  D      +   +  +               D   +L
Sbjct: 55  ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL 114

Query: 126 VGNKVDKESERVVTKKEGINFAREYG--------------------------CLFIECSA 159
             NK D   E++      I +    G                                 A
Sbjct: 115 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCA 174

Query: 160 KTRVNVQQCFEELVLKIL 177
               NVQ  F+ +   I+
Sbjct: 175 TDTKNVQFVFDAVTDVII 192

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 50.5 bits (119), Expect = 1e-08
 Identities = 31/166 (18%), Positives = 48/166 (28%), Gaps = 18/166 (10%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTA---- 70
            K+++ G    GKSSLL +        ++   G    V    +    + L I DTA    
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 71  ----GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
                +             A  ++ + D T  D              +          +V
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA---EIWPEFIARLPAKLPITVV 118

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
            NK D          E +  +   G   I  SA+T   V      L
Sbjct: 119 RNKADI-------TGETLGMSEVNGHALIRLSARTGEGVDVLRNHL 157

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 36/201 (17%), Positives = 63/201 (31%), Gaps = 20/201 (9%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           Y   +++ G    GK+SLL   T+D+     PT+     +   D  G  +   + D  G 
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSV---RPTVVSQEPLSAADYDGSGVT--LVDFPGH 56

Query: 73  ERFRTLTSSYY-----RGAQGIIMVYDVTRRDTFTNLSDVWAK--EIDLYSTNQDCIKLL 125
            + R   S Y           I MV         T  ++       I   S       L+
Sbjct: 57  VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 116

Query: 126 VGNKVDKESERVVTKK--------EGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
             NK +  + R  +K         + +   R+     +E         +   + L     
Sbjct: 117 ACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDG 176

Query: 178 DTPSLLAEGSKGLKKNIFKQK 198
              + L       + +I K+K
Sbjct: 177 FKFANLEASVVAFEGSINKRK 197

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 23/166 (13%), Positives = 46/166 (27%), Gaps = 4/166 (2%)

Query: 19  MIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----ER 74
           ++G    GKSSLL + T  + +              V    ++ +  + D  G       
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
            + L   + R      ++  V         +    ++           +  +      + 
Sbjct: 66  GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL 125

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
                 K   +     G   +  SA T   +    E L   +  TP
Sbjct: 126 LEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP 171

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.6 bits (101), Expect = 3e-06
 Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 2/166 (1%)

Query: 19  MIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78
           ++G   VGKS+LL +        +SP      K     +   + ++   DT G  +    
Sbjct: 10  IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDA 69

Query: 79  TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 138
              +        +                  ++  +    +  +  +    V  + +   
Sbjct: 70  LGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 129

Query: 139 TKKEGINFAREYGCL--FIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +E +    E          SA     V +   +L+  + + P  
Sbjct: 130 YPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFF 175

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.5 bits (101), Expect = 4e-06
 Identities = 30/181 (16%), Positives = 51/181 (28%), Gaps = 11/181 (6%)

Query: 7   SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAI 66
           S+ E     K+ ++G   VGKS+L  +  +     +SP  G        +V     K   
Sbjct: 1   SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF 60

Query: 67  WDTAGQERFRTLTSSYYRGAQGI----------IMVYDVTRRDTFTNLSDVWAKEIDLYS 116
            DTAG  R   +                     ++V  +      T      A  ++   
Sbjct: 61  VDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRG 120

Query: 117 TNQDCIKLLVGNKVDKESERVVTKKE-GINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
                +       V +E       K              I  SA    N+ +  + + L 
Sbjct: 121 RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 180

Query: 176 I 176
            
Sbjct: 181 Y 181

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 23/167 (13%), Positives = 60/167 (35%), Gaps = 20/167 (11%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG---- 71
           +++++G   VGKS+LL    +++   ++   G    V   ++  + +   I DTAG    
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 72  -----QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
                +      T      A  ++ V D +      +   +   +   Y    + + ++ 
Sbjct: 62  TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVE 121

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
               ++   ++ T +             ++ SA     +++  E + 
Sbjct: 122 KINEEEIKNKLGTDRH-----------MVKISALKGEGLEKLEESIY 157

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 4/186 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             +L++G  GVGKSS + S   +    +SP      +   V        L I DT G   
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
              +        +  ++   +        L       +D        I    G  +  ++
Sbjct: 93  GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKL--VAKAITDSFGKGIWNKA 150

Query: 135 ERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQCFEELVLKIL-DTPSLLAEGSKGLKK 192
              +T  +        Y   F + S      V+            D P +L E S    K
Sbjct: 151 IVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNK 210

Query: 193 NIFKQK 198
           N   +K
Sbjct: 211 NDSDEK 216

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 6e-05
 Identities = 21/170 (12%), Positives = 48/170 (28%), Gaps = 9/170 (5%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT-- 69
           D   ++   G S  GKSS L + T+      +       ++  +       +L       
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 70  ------AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
                   + +++     Y    Q +  +  +          D    E  + S     + 
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEEL 172
           L   +K+   + +              G       S+  +  V +  ++L
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 27/170 (15%), Positives = 45/170 (26%), Gaps = 3/170 (1%)

Query: 19  MIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78
           ++G   VGKS+LL           S                   +    DT G       
Sbjct: 10  IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69

Query: 79  TSSYYRGAQGIIMVYDVTRRDTFTNLSD--VWAKEIDLYSTNQDCIKLLVGNKVDKESER 136
             +          + DV         +      + +           +L  NKVD   E+
Sbjct: 70  AINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEK 129

Query: 137 VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTPSLLAE 185
                     A +   L  +  SA+T +NV      +   + +      E
Sbjct: 130 ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPE 179

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 17/167 (10%)

Query: 19  MIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE----- 73
           ++G   VGKS+L           +    GV        V        + DT G       
Sbjct: 5   IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD 64

Query: 74  ----RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
               + + +T +  R A  ++ V D  R  T  + S           T     K      
Sbjct: 65  IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANK---AEN 121

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + +    V  +   + F        I  SA+  +N+    E ++ K+
Sbjct: 122 LREFEREVKPELYSLGFGE-----PIPVSAEHNINLDTMLETIIKKL 163

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 8/194 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFT-SDNFEELSPTIGVDFKVK--YVDVGGKKLKLAIWDTAG 71
             + + G++G GKSS + +     N EE +   GV       +         +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
                    +Y    +     YD     + T        +I    +        V  KVD
Sbjct: 117 IGSTNFPPDTYL--EKMKFYEYDFFIIISATRFKK-NDIDIAKAISMMKKEFYFVRTKVD 173

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLK 191
            +       +    F +E     I  +           E  +  +L   ++       L 
Sbjct: 174 SDITNEADGEP-QTFDKEKVLQDIRLNCVNTFRENGIAEPPIF-LLSNKNVCHYDFPVLM 231

Query: 192 KNIFKQKPPEADAA 205
             +    P      
Sbjct: 232 DKLISDLPIYKRHN 245

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 16/174 (9%)

Query: 19  MIGDSGVGKSSLLLSFT-------SDNFEELSPTIGVDF-----KVKYVDVGGKKLKLAI 66
           ++G   VGKS+LL   +         +F  L P +G+            D+ G       
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 65

Query: 67  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
               G +  R +  +        +   +           +    E +L  T +  I +  
Sbjct: 66  GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 125

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
              + + +E +    E               SA TR  +++   E+  ++ +TP
Sbjct: 126 KMDMPEAAENL----EAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.89
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.85
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.85
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.84
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.84
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.83
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.79
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.78
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.73
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.71
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.69
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.69
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.66
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.6
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.54
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.52
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.41
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.41
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.37
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.23
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.19
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.0
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.97
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.94
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.9
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.47
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.32
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.3
d1okkd2	207	GTPase domain of the signal recognition particle r	98.23
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.23
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.2
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.18
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.18
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.17
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.08
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.07
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.06
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.83
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.78
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.73
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.71
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.69
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.64
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.63
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.61
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.61
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.6
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.59
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.57
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.53
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.51
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.5
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.47
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.45
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.44
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.43
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.38
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.35
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.33
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.32
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.32
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.31
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.29
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.26
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.24
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.24
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.22
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.22
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.2
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.19
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.19
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.18
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.16
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.14
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.13
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.12
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.12
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.11
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.11
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.1
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.1
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.09
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.09
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.09
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.06
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.06
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.05
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.04
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.04
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.03
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.97
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.97
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.96
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.91
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.91
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.9
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.89
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.89
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.89
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.85
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.84
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.83
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.8
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.77
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.77
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.76
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.75
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.7
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.68
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.63
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.59
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.59
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.59
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.54
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.53
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.52
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.5
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.5
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.49
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.48
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.46
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.42
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.39
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.38
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.34
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.21
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.13
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.97
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.97
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.97
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.92
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.84
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.82
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.81
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.7
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.64
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.64
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.62
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.57
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.53
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.51
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.47
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.47
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.41
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.4
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.39
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.29
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.29
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.28
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.23
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.11
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.05
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.04
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.93
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.88
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.88
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.87
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.84
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.76
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.7
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.69
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.62
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.57
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.49
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.22
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.2
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.14
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.14
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.06
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.96
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.88
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.72
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.59
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.27
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.16
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.12
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.1
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.01
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.93
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.97
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.97
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.95
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	90.45
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.15
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.01
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.0
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.99
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.58
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.03
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	87.49
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.67
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.47
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	86.18
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	85.72
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.37
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	84.81
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	84.67
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	84.08
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	83.93
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.49
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.91
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	81.39

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-38  Score=222.51  Aligned_cols=171  Identities=32%  Similarity=0.471  Sum_probs=153.7

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ++...+||+++|++|||||||+++|..+.+...+.+.........+.+++..+.+.+||++|.+.+...+..+++.+|++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            56678999999999999999999999999887777555666667788899999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|||++++.+|+.+.. |...+.......++|+++|+||.|+...+....++++.++...++++++|||++|.||+++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeecccccccccchhhh-hhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999988 76666655556789999999999998877888899999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028381          170 EELVLKILDTPS  181 (210)
Q Consensus       170 ~~l~~~~~~~~~  181 (210)
                      .++++.+.+.++
T Consensus       161 ~~l~~~i~k~~~  172 (173)
T d2fn4a1         161 EQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999977654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.8e-37  Score=215.90  Aligned_cols=167  Identities=48%  Similarity=0.842  Sum_probs=149.7

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      -++.+||+++|++|||||||+++|.++.+...+. +.+.+.....+...+..+.+.+||+||++.+..++..+++++|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            3678999999999999999999999998876655 788888888888899999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      |+|||+++++++..... |...+.. ......|+++|+||.|+.....+..++++.+++..++++++|||++|.||+++|
T Consensus        82 ilv~d~~~~~s~~~~~~-~~~~~~~-~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  159 (169)
T d3raba_          82 ILMYDITNEESFNAVQD-WSTQIKT-YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  159 (169)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHH-HCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECccchhhhhhhh-hhhhhhc-ccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHH
Confidence            99999999999999988 4444443 345678999999999998888888899999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028381          170 EELVLKILDT  179 (210)
Q Consensus       170 ~~l~~~~~~~  179 (210)
                      ++|++.++++
T Consensus       160 ~~l~~~i~ek  169 (169)
T d3raba_         160 ERLVDVICEK  169 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhhC
Confidence            9999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-37  Score=218.58  Aligned_cols=163  Identities=30%  Similarity=0.385  Sum_probs=132.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+++|.+..+....++.+. .+...+.+++..+.+.+||++|++.+..++..+++.+|++++|||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d   80 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGH-TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CE-EEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeee-eecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence            7999999999999999999998877655444444 345567889999999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (210)
                      ++++.+++.+.. |...+........+|+++|+||+|+...+.+...+++.++..+++++++|||++|.||+++|.+|++
T Consensus        81 ~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          81 VTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             TTCHHHHHHHHH-HHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccc-ccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            999999999988 7777776666677999999999999888888899999999999999999999999999999999999


Q ss_pred             HHHcC
Q 028381          175 KILDT  179 (210)
Q Consensus       175 ~~~~~  179 (210)
                      .+..+
T Consensus       160 ~i~~~  164 (168)
T d2gjsa1         160 QIRLR  164 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-36  Score=214.25  Aligned_cols=165  Identities=33%  Similarity=0.482  Sum_probs=147.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .+||+++|++|||||||++++.++.+.+.+.+.....+...+..++..+.+.+||++|.+.+...+..+++.+|++++||
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~   83 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVY   83 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEec
Confidence            58999999999999999999999988766653333444566788999999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC-CHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCFEEL  172 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l  172 (210)
                      |++++.||+++.. |...+.......++|+++|+||+|+...+.+..+++.+++++++++|++|||+++. ||+++|..+
T Consensus        84 d~~d~~Sf~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1          84 SVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             ccccchhhhccch-hhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHH
Confidence            9999999999988 77777666666789999999999998888899999999999999999999999986 999999999


Q ss_pred             HHHHHcC
Q 028381          173 VLKILDT  179 (210)
Q Consensus       173 ~~~~~~~  179 (210)
                      ++.++++
T Consensus       163 ~~~i~~~  169 (169)
T d1x1ra1         163 VRVIRQQ  169 (169)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1e-36  Score=215.03  Aligned_cols=164  Identities=35%  Similarity=0.566  Sum_probs=144.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|||||||+++++.+.|...+. |.+..+ ...+.+++..+.+.+||++|...+..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            35899999999999999999999999876665 666544 4567789999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      |||++++.+++.+.. |+..+.......++|+++|+||.|+.+.+.+..++++.++...++++++|||++|.||+++|.+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_          82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeeccchhhhhhHHH-HHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999988 8777777666778999999999999887888999999999999999999999999999999999


Q ss_pred             HHHHHHc
Q 028381          172 LVLKILD  178 (210)
Q Consensus       172 l~~~~~~  178 (210)
                      |++.+.+
T Consensus       161 l~~~i~~  167 (168)
T d1u8za_         161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9998865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=214.18  Aligned_cols=164  Identities=30%  Similarity=0.447  Sum_probs=146.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      .+.+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||++|.+.+..++..+++.+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            456899999999999999999999998876654 666554 566788999999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|||++++++|..+.. |...+.......++|+++|+||+|+...+.+..++++.++.+++++|++|||++|.||+++|.
T Consensus        81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  159 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  159 (167)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhh-hhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHH
Confidence            9999999999999988 766666656677899999999999988888899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028381          171 ELVLKIL  177 (210)
Q Consensus       171 ~l~~~~~  177 (210)
                      .|++.+.
T Consensus       160 ~li~~~~  166 (167)
T d1xtqa1         160 RIILEAE  166 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998874

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=214.79  Aligned_cols=164  Identities=38%  Similarity=0.729  Sum_probs=141.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +.+||+|+|++|||||||+++|..+.+...+. +.+..........++..+.+.+||++|+..+..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            67999999999999999999999999877665 77878888888889999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      |||+++++||+.+.. |+..+... .....|+++|+||.|+...+.+..++++.++..+++++++|||++|.||+++|.+
T Consensus        82 v~d~~~~~Sf~~~~~-~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~  159 (167)
T d1z08a1          82 VYDITDEDSFQKVKN-WVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  159 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEeCCchhHHHhhhh-hhhhcccc-cccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHH
Confidence            999999999999988 55555432 2456789999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHc
Q 028381          172 LVLKILD  178 (210)
Q Consensus       172 l~~~~~~  178 (210)
                      |++++++
T Consensus       160 l~~~i~~  166 (167)
T d1z08a1         160 LCKRMIE  166 (167)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=214.88  Aligned_cols=167  Identities=43%  Similarity=0.803  Sum_probs=149.0

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      -++.+||+++|++|||||||+++|..+.+...+. +.+.++....+.+++..+.+.+|||||++.+..++..++++++++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            3578999999999999999999999999876554 778888888889999999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|+|++++.++..+.. |...+... .....|+++|+||+|+.....+..++++.++...++++++|||++|.||+++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f  159 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPE-WLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF  159 (171)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEeeecccchhhhhhhh-hhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHH
Confidence            99999999999999988 55555442 34568999999999998777888899999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028381          170 EELVLKILDT  179 (210)
Q Consensus       170 ~~l~~~~~~~  179 (210)
                      .+|++.++..
T Consensus       160 ~~l~~~l~~~  169 (171)
T d2ew1a1         160 LDLACRLISE  169 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=214.28  Aligned_cols=167  Identities=33%  Similarity=0.525  Sum_probs=144.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..+||+++|++|||||||++++.++.+...+...........+.+++..+.+.+||++|...+...+..+++.+|++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            45899999999999999999999998876665333355667788899999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      ||.+++.+++.+.. |...+.........|++||+||+|+...+.+..+++..+++.++++|++|||++|.||+++|.+|
T Consensus        84 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          84 FSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eccccccchhhHHH-HhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            99999999999988 66666555556789999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHcCC
Q 028381          173 VLKILDTP  180 (210)
Q Consensus       173 ~~~~~~~~  180 (210)
                      ++.+.+.+
T Consensus       163 ~~~i~k~~  170 (171)
T d2erya1         163 VRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99986654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-36  Score=213.93  Aligned_cols=162  Identities=33%  Similarity=0.591  Sum_probs=147.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|..+.+...+ ++.+.+........++..+.+.+||++|+..+...+..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            489999999999999999999998886655 4888888888889999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      ||++++.+++.+.. |+..+..+.  .++|+++|+||+|+.+.+.+..++++.+++.+++++++|||++|.||+++|++|
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  158 (164)
T d1z2aa1          82 FSTTDRESFEAISS-WREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  158 (164)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             Eeccchhhhhhccc-ccccccccC--CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHH
Confidence            99999999999987 877776543  568999999999998888888899999999999999999999999999999999


Q ss_pred             HHHHHc
Q 028381          173 VLKILD  178 (210)
Q Consensus       173 ~~~~~~  178 (210)
                      ++.+++
T Consensus       159 ~~~~lq  164 (164)
T d1z2aa1         159 AEKHLQ  164 (164)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-36  Score=211.97  Aligned_cols=163  Identities=53%  Similarity=0.868  Sum_probs=148.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ++.+||+++|++|||||||++++.++.+...++ +.+.++.......++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            578999999999999999999999999877666 7777888888899999999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|||+++.+++..+.. |...+.. ......|+++++||.|+........++++.+++..++++++|||++|.||+++|.
T Consensus        82 lv~d~~~~~s~~~~~~-~~~~~~~-~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~  159 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSS-WLTDARN-LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  159 (166)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeccCchHHHHHHHH-HHHHHHh-hccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999988 5555554 3456789999999999988888888899999999999999999999999999999


Q ss_pred             HHHHHH
Q 028381          171 ELVLKI  176 (210)
Q Consensus       171 ~l~~~~  176 (210)
                      ++++.+
T Consensus       160 ~i~~~i  165 (166)
T d1z0fa1         160 EAAKKI  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999886

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=212.04  Aligned_cols=167  Identities=32%  Similarity=0.594  Sum_probs=146.5

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .+....+||+++|++|||||||+++|+.+.|...+. |.+ ......+...+..+.+.+||++|++.+...+..+++.+|
T Consensus         4 ~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~   82 (185)
T d2atxa1           4 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   82 (185)
T ss_dssp             CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccc
Confidence            357788999999999999999999999999877665 554 455666778888999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhC-CeE
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYG-CLF  154 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~  154 (210)
                      ++++|||+++++||++...+|...++..  ..+.|+++|+||+|+.+            .+.+..+++..++..++ +.|
T Consensus        83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~  160 (185)
T d2atxa1          83 VFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY  160 (185)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred             eeeeccccchHHHHHHHHHHHHHHHHhc--CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEE
Confidence            9999999999999999888788888764  45789999999999864            35678888999999988 689


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHc
Q 028381          155 IECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       155 ~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ++|||++|.||+++|+.++++++.
T Consensus       161 ~E~SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         161 VECSALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEecCCCCcCHHHHHHHHHHHHcC
Confidence            999999999999999999998854

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-36  Score=213.45  Aligned_cols=162  Identities=30%  Similarity=0.451  Sum_probs=140.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|+++.+...+. |.+..+ ......++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            5899999999999999999999999876654 665443 45567899999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHh-hhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEID-LYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      ||+++++++..+.. |...+. ......++|+++|+||+|+...+.+..++++.+++.+++++++|||++|.||+++|..
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          81 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             eecccccchhcccc-hhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999988 554443 3334567999999999999888888899999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028381          172 LVLKIL  177 (210)
Q Consensus       172 l~~~~~  177 (210)
                      |++.+.
T Consensus       160 l~~~~~  165 (171)
T d2erxa1         160 LLNLEK  165 (171)
T ss_dssp             HHHTCC
T ss_pred             HHHHHH
Confidence            998653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-35  Score=213.09  Aligned_cols=172  Identities=51%  Similarity=0.822  Sum_probs=153.8

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ..++.+||+|+|++|||||||+++|..+.+...+. +.+.++....+.+++..+.+.+||+||++.+..+|..+++++|+
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            35788999999999999999999999998876654 88888888888899999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      +|+|||+++++++..... |...+.. ....++|+++|+||.|+.+...+..++...++...+++++++||++|.||+++
T Consensus        82 ~i~v~d~t~~~s~~~~~~-~~~~~~~-~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~  159 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKM-WLQEIDR-YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA  159 (194)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHH-HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHH
T ss_pred             EEEEEeCcchhhhhhHhh-hhhhhhh-cccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHH
Confidence            999999999999999988 4444543 24677999999999999988889999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcc
Q 028381          169 FEELVLKILDTPSLL  183 (210)
Q Consensus       169 ~~~l~~~~~~~~~~~  183 (210)
                      |.++++.+.+.....
T Consensus       160 f~~l~~~i~~~~~~~  174 (194)
T d2bcgy1         160 FLTMARQIKESMSQQ  174 (194)
T ss_dssp             HHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999997766443

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-36  Score=211.13  Aligned_cols=164  Identities=35%  Similarity=0.569  Sum_probs=146.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +.+||+++|++|||||||+++|+++.+...+.+...+.+.....+++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            56899999999999999999999999877766444456667788899999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      ||++++.++..+.. |...+.......++|++|||||+|+...+.+..++++.++...++++++|||++|.||+++|.++
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          82 YSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeecchhhhhhhhc-hhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            99999999999998 66666554556789999999999998877888899999999999999999999999999999999


Q ss_pred             HHHHH
Q 028381          173 VLKIL  177 (210)
Q Consensus       173 ~~~~~  177 (210)
                      ++++.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-35  Score=210.87  Aligned_cols=166  Identities=49%  Similarity=0.877  Sum_probs=145.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      .+.+||+|+|++|||||||++++.++.+...+. +...+.........+..+.+.+||++|+..+...+..++..+|+++
T Consensus         1 ~y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CeeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            367999999999999999999999999876665 6667777777788889999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|||++++.+|+.+.. |...+... ...++|++||+||+|+...+....+++..++...++++++|||++|.||+++|.
T Consensus        81 lv~d~~~~~sf~~~~~-~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~  158 (173)
T d2a5ja1          81 LVYDITRRETFNHLTS-WLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI  158 (173)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEeecChHHHHhHHH-HHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            9999999999999998 55555543 356799999999999988788888999999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 028381          171 ELVLKILDT  179 (210)
Q Consensus       171 ~l~~~~~~~  179 (210)
                      ++++.++++
T Consensus       159 ~i~~~i~~~  167 (173)
T d2a5ja1         159 NTAKEIYRK  167 (173)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=209.83  Aligned_cols=166  Identities=48%  Similarity=0.820  Sum_probs=149.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ++.+||+++|++|||||||+++|..+.+...+. +.+.+.....+..++....+.+||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            578999999999999999999999998876655 7788877787888999999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|+|.++++++..+.. |...+... ...+.|+++|+||+|+........+.+..++...++++++|||++|.|++++|.
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1          83 LVYDITSRETYNALTN-WLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEecccchhHHHHhh-hhcccccc-cCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            9999999999999988 55555543 356799999999999988788888889999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 028381          171 ELVLKILDT  179 (210)
Q Consensus       171 ~l~~~~~~~  179 (210)
                      ++++.++++
T Consensus       161 ~l~~~i~~~  169 (174)
T d2bmea1         161 QCARKILNK  169 (174)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-35  Score=210.16  Aligned_cols=163  Identities=29%  Similarity=0.520  Sum_probs=142.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|..+.|...+. +.+ .........++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            5899999999999999999999999877665 555 44566677888999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhC-CeEEEEcc
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYG-CLFIECSA  159 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa  159 (210)
                      ||+++++||+++..+|...+...  ..+.|+++|+||.|+.+            ...+..++++.++...+ ++|++|||
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             cccchHHHHHHHHHHHHHHHhhc--CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            99999999999988787777754  46799999999999853            34578888999999865 78999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcC
Q 028381          160 KTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ++|.||+++|+.++..+++.
T Consensus       160 k~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTSC
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            99999999999999888544

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-35  Score=207.72  Aligned_cols=163  Identities=32%  Similarity=0.561  Sum_probs=143.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      ..||+++|++|||||||+++|..+.+...+.+............++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            47999999999999999999999998876653333555666788999999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CeEEEEccC
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFIECSAK  160 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  160 (210)
                      |+++++||+++..+|...+..+  ..++|++||+||+|+...            +.+..++++.+++..+ .+|++|||+
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAk  159 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK  159 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHh--CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCC
Confidence            9999999999988788877764  457999999999999643            3567888999999988 479999999


Q ss_pred             CCCCHHHHHHHHHHHHHc
Q 028381          161 TRVNVQQCFEELVLKILD  178 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~  178 (210)
                      +|.||+++|+.+.+++++
T Consensus       160 t~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         160 TKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHhC
Confidence            999999999999998874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-35  Score=208.31  Aligned_cols=165  Identities=45%  Similarity=0.777  Sum_probs=145.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ++.+||+|+|++|||||||+++|.++.+...+. +.+.+.....+..++..+.+.+||++|++.+...+..+++.+|++|
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            578999999999999999999999998876554 7777777888889999999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|||.+++.++..+.. |+..+..+. ..++|+++|+||+|+.+......+....+....+.++++|||++|.|++++|.
T Consensus        82 ~v~d~~~~~S~~~~~~-~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~  159 (175)
T d2f9la1          82 LVYDIAKHLTYENVER-WLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK  159 (175)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCcccchhHHH-HHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHH
Confidence            9999999999999998 666666543 46799999999999987777777778888888999999999999999999999


Q ss_pred             HHHHHHHc
Q 028381          171 ELVLKILD  178 (210)
Q Consensus       171 ~l~~~~~~  178 (210)
                      ++++.+.+
T Consensus       160 ~l~~~i~~  167 (175)
T d2f9la1         160 NILTEIYR  167 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-35  Score=206.40  Aligned_cols=164  Identities=33%  Similarity=0.561  Sum_probs=145.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|||||||+++|+++.+...+. +.+..+ ...+...+..+.+.+||++|.+.+...+..+++.++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceee-ccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            45899999999999999999999999877665 555444 4556778899999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      |||.+++.+++.+.. |...+.......++|+++|+||+|+. .+.+..++++.++...++++++|||++|.||+++|.+
T Consensus        81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eecccccccHHHHHH-HHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999988 88888877667789999999999985 4566778899999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028381          172 LVLKILDT  179 (210)
Q Consensus       172 l~~~~~~~  179 (210)
                      +++.+.++
T Consensus       159 i~~~i~~~  166 (166)
T d1ctqa_         159 LVREIRQH  166 (166)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhC
Confidence            99998653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=208.60  Aligned_cols=163  Identities=40%  Similarity=0.616  Sum_probs=143.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +.+||+++|++|||||||+++|..+.|...+. +.+. .....+..++..+.+.+||++|...+...+..+++.+|++++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEE-EEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccc-ccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            56899999999999999999999999987665 5554 445667788999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCeEEEEccCCCCCHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      |||++++.+|+.+.. |...+.......++|+++|+||+|+........+++..++... ++++++|||++|.||+++|.
T Consensus        81 v~d~~~~~sf~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             eeeccchhhhHhHHH-HHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            999999999999998 6665555455678999999999999888888888889998874 68999999999999999999


Q ss_pred             HHHHHHH
Q 028381          171 ELVLKIL  177 (210)
Q Consensus       171 ~l~~~~~  177 (210)
                      +|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999874

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=207.57  Aligned_cols=161  Identities=39%  Similarity=0.690  Sum_probs=144.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.++++...+. +.+.+........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            699999999999999999999999877665 7777888888888999999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHH
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (210)
                      |++++.++..+.. |...+... ...+.|+++|+||.|+.+......+++..++..+++++++|||++|.||+++|.+|+
T Consensus        81 d~~~~~s~~~i~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~  158 (164)
T d1yzqa1          81 DITNVNSFQQTTK-WIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  158 (164)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccccchhhhHh-hHHHHHHh-cCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            9999999999998 55545443 246799999999999988788888899999999999999999999999999999999


Q ss_pred             HHHH
Q 028381          174 LKIL  177 (210)
Q Consensus       174 ~~~~  177 (210)
                      +++.
T Consensus       159 ~~l~  162 (164)
T d1yzqa1         159 AALP  162 (164)
T ss_dssp             HHSC
T ss_pred             HhhC
Confidence            9874

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=209.07  Aligned_cols=163  Identities=31%  Similarity=0.495  Sum_probs=140.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++++.+.|.+.+. |.+..+. .....++..+.+.+||++|...+. ....+++.+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            5899999999999999999999999876655 6666554 445678999999999999987764 455678899999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCC-CHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCFEE  171 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~  171 (210)
                      ||++++.++..+.. |...+.......+.|+++|+||+|+...+.+..++++.++++++++|++|||++|. ||+++|..
T Consensus        80 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~  158 (168)
T d2atva1          80 YDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE  158 (168)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred             cccCCccchhhhhh-hcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHH
Confidence            99999999999988 65555555556789999999999998778899999999999999999999999998 59999999


Q ss_pred             HHHHHHcC
Q 028381          172 LVLKILDT  179 (210)
Q Consensus       172 l~~~~~~~  179 (210)
                      |++.+.++
T Consensus       159 l~~~i~~~  166 (168)
T d2atva1         159 LCREVRRR  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-35  Score=206.01  Aligned_cols=162  Identities=37%  Similarity=0.672  Sum_probs=146.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +.+||+++|++|||||||+++|..+.+...+. +.+..........++....+.+||++|++.+..++..+++.+|++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            57999999999999999999999999877665 77888888888889999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      |||++++++|+.+.. |...+... ...+.|+++|+||+|+.+.+.+..++++.++...+++|++|||++|.||+++|.+
T Consensus        83 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1          83 VYDITKEETFSTLKN-WVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeeechhhhhhhHHH-hhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999988 55555443 3567999999999999888888999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028381          172 LVLKI  176 (210)
Q Consensus       172 l~~~~  176 (210)
                      |++++
T Consensus       161 l~~~i  165 (167)
T d1z0ja1         161 ISRRI  165 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99876

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-35  Score=206.70  Aligned_cols=172  Identities=62%  Similarity=0.960  Sum_probs=153.3

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .-..+||+++|++|||||||+++|.++.+...+. +.+.+.....+.+++..+.+.+||+||++.+..++..++..+|++
T Consensus         4 ~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~i   83 (177)
T d1x3sa1           4 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   83 (177)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             ccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            3456999999999999999999999999876655 777777777888999999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|||++++.++..+.. |...+.........|+++++||.|. ..+.+..++++.+++.+++++++|||++|.|++++|
T Consensus        84 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~i~~~~nk~d~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f  161 (177)
T d1x3sa1          84 ILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF  161 (177)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTS-SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEECCCccccccchh-hhhhhcccccccceeeEEEeecccc-ccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999988 7777766666778999999999996 456677888999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCccc
Q 028381          170 EELVLKILDTPSLLA  184 (210)
Q Consensus       170 ~~l~~~~~~~~~~~~  184 (210)
                      +++++.+++++...+
T Consensus       162 ~~l~~~l~~~p~l~~  176 (177)
T d1x3sa1         162 EELVEKIIQTPGLWE  176 (177)
T ss_dssp             HHHHHHHHTSGGGTC
T ss_pred             HHHHHHHccCccccc
Confidence            999999999876653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-35  Score=207.54  Aligned_cols=165  Identities=40%  Similarity=0.690  Sum_probs=148.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      .-.+||+++|++|||||||+++|..+.+...+. +.+.+.........+..+.+.+||++|++.+...+..+++.+|+++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            446899999999999999999999999876654 8888888888888999999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      +|||.++.++++.+.. |...+.. ....++|+++|+||+|+...+.+..++++.++...++++++|||++|.||+++|.
T Consensus        84 lv~d~~~~~s~~~~~~-~~~~~~~-~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~  161 (170)
T d1r2qa_          84 VVYDITNEESFARAKN-WVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM  161 (170)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeccchhhHHHHHHH-Hhhhhhh-ccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHH
Confidence            9999999999999988 4444443 2356799999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHc
Q 028381          171 ELVLKILD  178 (210)
Q Consensus       171 ~l~~~~~~  178 (210)
                      +|++.+.+
T Consensus       162 ~l~~~i~~  169 (170)
T d1r2qa_         162 AIAKKLPK  169 (170)
T ss_dssp             HHHHTSCC
T ss_pred             HHHHHHhh
Confidence            99988754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-36  Score=215.96  Aligned_cols=169  Identities=37%  Similarity=0.688  Sum_probs=146.9

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECC----------eEEEEEEEeCCCccccccch
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGG----------KKLKLAIWDTAGQERFRTLT   79 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~l~D~~g~~~~~~~~   79 (210)
                      -++.+||+++|++|||||||+++|+++.+...+. +.+.++....+.+++          ..+.+.+||++|++.+..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            3578999999999999999999999998876554 666665555554432          35789999999999999999


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEcc
Q 028381           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                      ..+++++|++|+|||++++.+++.+.. |...+.........|+++|+||.|+...+.+..+++..+++.+++++++|||
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHhcCCEEEEEEeccccccceeeee-ccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeC
Confidence            999999999999999999999999988 7777766555677899999999999888889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCC
Q 028381          160 KTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ++|.||+++|.++++.+.++.
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~  181 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRM  181 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999987643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=204.08  Aligned_cols=165  Identities=43%  Similarity=0.771  Sum_probs=139.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-C-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-P-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      +..+||+++|+++||||||++++..+.+...+ + +.+.++....+..++..+.+.+|||+|++.+..++..+++++|++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            56799999999999999999999998875443 3 567788888888999999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      ++|||++++.++..+..+|......  .....|+++|+||.|+.....+..+++..++...++++++|||++|.||+++|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f  161 (170)
T d2g6ba1          84 LLLYDVTNKASFDNIQAWLTEIHEY--AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  161 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEecCCcccchhhhhhhhhhhhhc--cCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            9999999999999999855444443  35578999999999998888899999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 028381          170 EELVLKILD  178 (210)
Q Consensus       170 ~~l~~~~~~  178 (210)
                      .+|++.+.+
T Consensus       162 ~~l~~~i~k  170 (170)
T d2g6ba1         162 TAIAKELKR  170 (170)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHcCC
Confidence            999998854

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-35  Score=207.97  Aligned_cols=167  Identities=48%  Similarity=0.896  Sum_probs=121.1

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .++.+||+++|+++||||||+++|.++.+...+. +.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            4688999999999999999999999988766554 777788888889999999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      |+|||++++.++..+.. |...+.. ....+.|+++|+||.|+........+++..++...++++++|||++|.||+++|
T Consensus        83 i~v~d~~~~~s~~~~~~-~~~~~~~-~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f  160 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRN-WIRNIEE-HASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF  160 (173)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHH-HSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred             EEEEECCChhhHHHHHH-HHHHhhh-hccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999988 5555543 346679999999999998877888888899999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028381          170 EELVLKILDT  179 (210)
Q Consensus       170 ~~l~~~~~~~  179 (210)
                      .+|++.+.++
T Consensus       161 ~~l~~~i~~k  170 (173)
T d2fu5c1         161 FTLARDIKAK  170 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988553

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-36  Score=210.44  Aligned_cols=163  Identities=33%  Similarity=0.571  Sum_probs=138.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|+++.+...+. |.+.++....+..++..+.+.+||++|+..+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            4799999999999999999999998876654 778888888888899999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      ||+++++||+.+.. |+..+...  ..++|+++|+||+|+......  ++...++...++++++|||++|.||+++|.+|
T Consensus        83 ~d~~~~~Sf~~~~~-~~~~~~~~--~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  157 (170)
T d1i2ma_          83 FDVTSRVTYKNVPN-WHRDLVRV--CENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  157 (170)
T ss_dssp             EETTSGGGGTTHHH-HHHHHHHH--HCSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHH
T ss_pred             cccccccccchhHH-HHHHHhhc--cCCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999988 66666554  357999999999999655433  34567788889999999999999999999999


Q ss_pred             HHHHHcCCC
Q 028381          173 VLKILDTPS  181 (210)
Q Consensus       173 ~~~~~~~~~  181 (210)
                      ++.+++++.
T Consensus       158 ~~~l~~~~~  166 (170)
T d1i2ma_         158 ARKLIGDPN  166 (170)
T ss_dssp             HHHHHTCTT
T ss_pred             HHHHccCCC
Confidence            999987654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=205.37  Aligned_cols=167  Identities=26%  Similarity=0.361  Sum_probs=141.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhcccCccEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-TLTSSYYRGAQGI   89 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~   89 (210)
                      ..+||+++|++|||||||+++|.+..+..  ..++.+.+.+...+.+++..+.+.+||+++..... -++..+++.+|++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~   81 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence            46999999999999999999999877643  33467777778888899999999999987643222 2566788999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      |+|||++++.+++.+.. |...+.......++|+++|+||+|+...+.+..++++.++..+++++++|||++|.||+++|
T Consensus        82 ilvfd~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1          82 LIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccchhhhhhh-hhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHH
Confidence            99999999999999988 66666655556789999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028381          170 EELVLKILDTP  180 (210)
Q Consensus       170 ~~l~~~~~~~~  180 (210)
                      .+|++.+..++
T Consensus       161 ~~l~~~i~~rr  171 (172)
T d2g3ya1         161 EGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHcc
Confidence            99999986654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-34  Score=204.48  Aligned_cols=166  Identities=30%  Similarity=0.523  Sum_probs=143.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      .+.+||+|+|++|||||||+++|+.+.|...+. +.+ ......+..++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            467999999999999999999999999877665 544 455566788999999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CeEEEE
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~  157 (210)
                      +|||++++++|+++..+|...+..+  ..++|+++|+||+|+...            ......++..+++.++ ++|++|
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~  159 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHh--CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEc
Confidence            9999999999999987788777764  457899999999998543            2345667888888887 789999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCC
Q 028381          158 SAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ||++|.||+++|..+++.++..+
T Consensus       160 SAk~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         160 SALTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCCCcCHHHHHHHHHHHHcCCC
Confidence            99999999999999999987553

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=198.84  Aligned_cols=163  Identities=55%  Similarity=0.873  Sum_probs=139.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|+.+.+...+ ++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            589999999999999999999999987665 4888888888899999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (210)
                      ||++++.+++.+.. |...+.. ......|++++++|.|+. .+....+++..++..+++++++|||++|.||+++|++|
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~-~~~~~~~~i~~~~k~d~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l  158 (166)
T d1g16a_          82 YDITDERTFTNIKQ-WFKTVNE-HANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  158 (166)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHH-HSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCccCHHHHHh-hhhhhhc-cccCcceeeeecchhhhh-hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHH
Confidence            99999999999988 4444444 235567889999999974 45566778899999999999999999999999999999


Q ss_pred             HHHHHcC
Q 028381          173 VLKILDT  179 (210)
Q Consensus       173 ~~~~~~~  179 (210)
                      ++.+.++
T Consensus       159 ~~~i~~k  165 (166)
T d1g16a_         159 AKLIQEK  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-33  Score=198.46  Aligned_cols=159  Identities=38%  Similarity=0.671  Sum_probs=140.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhcccCccEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-LTSSYYRGAQGII   90 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i   90 (210)
                      +.+||+++|++|||||||+++|..+.+...++ +.+.........+......+.+||++|...... .+..+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            46899999999999999999999999877666 777777778888899999999999999877654 5677899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCC---CCCHHH
Q 028381           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT---RVNVQQ  167 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~  167 (210)
                      +|||++++++|+.+.. |...+..+....++|++|||||+|+...+.+..++++.+++.+++++++|||++   +.||++
T Consensus        81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e  159 (165)
T d1z06a1          81 FVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  159 (165)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEeehhhhhhhhhh-hhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHH
Confidence            9999999999999988 777777666677899999999999988888899999999999999999999997   459999


Q ss_pred             HHHHH
Q 028381          168 CFEEL  172 (210)
Q Consensus       168 ~~~~l  172 (210)
                      +|.+|
T Consensus       160 ~F~~l  164 (165)
T d1z06a1         160 IFMTL  164 (165)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99886

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=199.51  Aligned_cols=162  Identities=44%  Similarity=0.709  Sum_probs=143.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|||||||+++|.++.+.+.+. +.+.++....+..++..+.+.+||++|++.+...+..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            46899999999999999999999999877665 88888888888999999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC---CceecHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES---ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      |||++++.+++.+.. |...+... .....|+++|+||.|+.+   .+.+..+++..+++..+++|++|||++|.||+++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~  159 (170)
T d1ek0a_          82 VYDVTKPQSFIKARH-WVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEeCCcccchhhhhh-hhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHH
Confidence            999999999999988 44444432 355789999999999843   4677888999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028381          169 FEELVLKI  176 (210)
Q Consensus       169 ~~~l~~~~  176 (210)
                      |.+|++.+
T Consensus       160 F~~i~~~i  167 (170)
T d1ek0a_         160 FLGIGEKI  167 (170)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHHh
Confidence            99988754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-33  Score=200.76  Aligned_cols=164  Identities=26%  Similarity=0.510  Sum_probs=142.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .+||+++|++|||||||++++..+.|.+.+.+.........+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            57999999999999999999999998876653333455566778899999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhC-CeEEEEccC
Q 028381           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYG-CLFIECSAK  160 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~  160 (210)
                      |+++++||+.+..+|...+...  ..+.|+++||||.|+..            .+.+..+++..+++..+ .+|++|||+
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~--~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk  159 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  159 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred             ecccCCCHHHHHHHHHHHHhcc--CCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCC
Confidence            9999999999988787777654  45799999999999853            35578889999999987 479999999


Q ss_pred             CCC-CHHHHHHHHHHHHHcC
Q 028381          161 TRV-NVQQCFEELVLKILDT  179 (210)
Q Consensus       161 ~~~-~i~~~~~~l~~~~~~~  179 (210)
                      +|. +++++|+.+++.++++
T Consensus       160 ~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         160 QSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             TBHHHHHHHHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            998 5999999999998763

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-33  Score=196.21  Aligned_cols=166  Identities=40%  Similarity=0.715  Sum_probs=143.9

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....+||+|+|++|||||||+++|..+.+...+. +.+.+........++..+.+.+||++|.......+...+..+|++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            4567899999999999999999999999877665 788888888888899999999999999999888999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhc---cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CeEEEEccCCCCCH
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYS---TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNV  165 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  165 (210)
                      ++++|.+++.+++.+.. |...+....   ...++|+++|+||.|+. .+.+..++++.++++.+ ++|++|||++|.||
T Consensus        83 i~~~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilVgnK~Dl~-~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI  160 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  160 (174)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEeeecccccchhhh-HHHHHHHHhccccCCCceEEEeccccchh-hccCcHHHHHHHHHHcCCCeEEEEcCCCCcCH
Confidence            99999999999999888 776665432   23568999999999985 45678888999998874 78999999999999


Q ss_pred             HHHHHHHHHHHHc
Q 028381          166 QQCFEELVLKILD  178 (210)
Q Consensus       166 ~~~~~~l~~~~~~  178 (210)
                      +++|+++++.++.
T Consensus       161 ~e~f~~l~~~il~  173 (174)
T d1wmsa_         161 AAAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-33  Score=199.09  Aligned_cols=165  Identities=38%  Similarity=0.695  Sum_probs=128.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .+||+++|++|||||||+++|.++++...+. +.+.+........ +.....+.+||++|++.+...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            5899999999999999999999998876654 5555555554443 4445778999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCc-eecHHHHHHHHHHhC-CeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESER-VVTKKEGINFAREYG-CLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~  166 (210)
                      |||++++.+|+.+.. |+..+..+..   ..++|+++|+||+|+.+.+ .+..++++.++..++ +++++|||++|.||+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          82 VYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             Eeecccccccchhhh-cchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            999999999999887 7776654322   3478999999999997654 467788899998886 789999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028381          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|.+|++.++++
T Consensus       161 e~f~~l~~~~l~~  173 (175)
T d1ky3a_         161 TAFEEIARSALQQ  173 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-33  Score=200.70  Aligned_cols=167  Identities=37%  Similarity=0.643  Sum_probs=143.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+|+|.+|||||||+++|+++++...+. +.+.+.....+...+..+.+.+||++|...+...+...+..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            5899999999999999999999999876665 888888888889999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCeEEEEccCCCCCHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~  168 (210)
                      +|.++..++..+.. |+..+.....   ..++|+++|+||+|+.+ ..+..++...++.. .++++++|||++|.||+++
T Consensus        82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          82 FDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             ecccchhhhhcchh-hHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHH
Confidence            99999999999988 7776655432   34589999999999865 44556666667655 5789999999999999999


Q ss_pred             HHHHHHHHHcCCCc
Q 028381          169 FEELVLKILDTPSL  182 (210)
Q Consensus       169 ~~~l~~~~~~~~~~  182 (210)
                      |.++++.+++++..
T Consensus       160 f~~l~~~i~~~~~~  173 (184)
T d1vg8a_         160 FQTIARNALKQETE  173 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccc
Confidence            99999998876543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=1e-31  Score=188.62  Aligned_cols=159  Identities=24%  Similarity=0.387  Sum_probs=127.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +.+||+|+|++|||||||+++|.+..+....++.+.....  +.  ...+.+.+||+||++.+...+..+++.++++++|
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKT--LE--HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEE--EE--ETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeee--cc--ccccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            3589999999999999999999998887666676654433  23  3457899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      +|+++..++......|...+.. ....++|++||+||.|+++.......  ....     ....+++++|||++|.|+++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVE-ERLAGATLLIFANKQDLPGALSCNAI--QEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHH--HHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eecccchhHHHHHHhhhhhhhh-cccCCCceEEEEeccccccccCHHHH--HHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            9999999999988866665543 34567999999999999754433322  2221     12245699999999999999


Q ss_pred             HHHHHHHHHHc
Q 028381          168 CFEELVLKILD  178 (210)
Q Consensus       168 ~~~~l~~~~~~  178 (210)
                      +|+||++.+.+
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999998865

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.4e-31  Score=188.25  Aligned_cols=161  Identities=22%  Similarity=0.343  Sum_probs=133.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..+||+++|++|||||||++++.++.+....++.+..+ ...+.+++..+.+.+||++|+..+     .+++.+|++|+|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            36999999999999999999999999877665555544 566788999999999999997653     367889999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCC--CceecHHHHHHHHHH-hCCeEEEEccCCCCCHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKES--ERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~  167 (210)
                      ||++++.||+++.. |...+....  ....+|+++|+||.|+..  .+.+..+++..++.. .+++|++|||+++.|+++
T Consensus        78 fd~~~~~Sf~~~~~-~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          78 FSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             eecccchhhhhhHH-HHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            99999999999988 777775432  245689999999988743  455677888888765 468999999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 028381          168 CFEELVLKILDTP  180 (210)
Q Consensus       168 ~~~~l~~~~~~~~  180 (210)
                      +|..+++.+++..
T Consensus       157 ~F~~l~~~i~~~~  169 (175)
T d2bmja1         157 VFQEVAQKVVTLR  169 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=6.7e-32  Score=189.44  Aligned_cols=158  Identities=22%  Similarity=0.344  Sum_probs=123.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|||||||+++|..+.+...+ +|.+.++...  ..  ..+.+.+||+||+..+...+..++..++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI--TK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE--EE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeee--ee--eeEEEEEeeccccccccccccccccccchhhc
Confidence            3689999999999999999999999886644 4666555433  33  45789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec---HHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT---KKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      |||+++..++.....+|...+.. ....++|+++|+||.|+.+.....   .......+...+++++++||++|.|++++
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             ccccccccccchhhhhhhhhhhh-hcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            99999999999998845444443 446679999999999986543211   11111222234567999999999999999


Q ss_pred             HHHHHHH
Q 028381          169 FEELVLK  175 (210)
Q Consensus       169 ~~~l~~~  175 (210)
                      |+||++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=7.9e-33  Score=197.43  Aligned_cols=163  Identities=23%  Similarity=0.350  Sum_probs=125.7

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ...+.+||+++|++|||||||+++|.++.+....++.+........    ..+.+.+||++|++.+...+..++..+|++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSY----KNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEE----TTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEee----CCEEEEEEecccccccchhHHhhhccceeE
Confidence            4567899999999999999999999988887666666655543322    457899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCeEEEEccCCCCC
Q 028381           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-----FAREYGCLFIECSAKTRVN  164 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~  164 (210)
                      ++|+|+++..++.....+|...+.. ....+.|++||+||+|+....  ..+++..     .+...++++++|||++|.|
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~-~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQE-EELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTS-STTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEeeecccccchhHHHHHHHHHHh-hccCCcceEEEEEeecccccc--CHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            9999999999999988844444443 445679999999999996432  2222222     2233456799999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 028381          165 VQQCFEELVLKILDT  179 (210)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (210)
                      ++++|+||++.+.++
T Consensus       166 v~e~~~~l~~~i~~~  180 (182)
T d1moza_         166 ITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999998653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=2.9e-32  Score=193.39  Aligned_cols=161  Identities=24%  Similarity=0.347  Sum_probs=126.0

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ..+..+.+||+++|++|||||||+++|.++.+....++.+.+...  +..  ..+.+.+||++|++.+...+..+++.+|
T Consensus        10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~--i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS--VQS--QGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEE--EEE--TTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEE--ecc--CCeeEeEeeccccccchhHHHHHhhccc
Confidence            345567799999999999999999999999887655555544432  333  3478999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCeEEEEccCCC
Q 028381           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-----FAREYGCLFIECSAKTR  162 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~  162 (210)
                      ++++|||+++..++..+..+|.. +.......++|++||+||+|+......  ....+     .+....+++++|||++|
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~-~~~~~~~~~~pillv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SA~tg  162 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTE-LLEEEKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTG  162 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHH-HTTCGGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             eeEEeeccccccchhhhhhhhhh-hhhhhccCCCeEEEEEEeccccccccH--HHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            99999999999999999884444 444445667999999999999654322  22211     12233567999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028381          163 VNVQQCFEELVLK  175 (210)
Q Consensus       163 ~~i~~~~~~l~~~  175 (210)
                      .|++++|+||++.
T Consensus       163 ~gv~e~~~~l~~~  175 (176)
T d1fzqa_         163 EGVQDGMNWVCKN  175 (176)
T ss_dssp             TTHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=7.2e-32  Score=190.89  Aligned_cols=160  Identities=25%  Similarity=0.399  Sum_probs=124.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .+.+||+++|++|||||||+++|.++.+....++.+.....    .....+.+.+||+||...+...+..+++.++++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEE----EEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEE----eeccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            45699999999999999999999988876555555544332    23345789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee---cHHHHHHHHHHhCCeEEEEccCCCCCHHHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV---TKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (210)
                      |+|+++..++..+..+|...+.. ....+.|+++++||+|+++....   ..+.....+...++.+++|||++|+||+++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~-~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~  164 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  164 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEecccchhHHHHHHHHHHHhhh-cccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence            99999999999998855555543 34567999999999999654222   111111222333567999999999999999


Q ss_pred             HHHHHHHH
Q 028381          169 FEELVLKI  176 (210)
Q Consensus       169 ~~~l~~~~  176 (210)
                      |+||.+.+
T Consensus       165 ~~~l~~~~  172 (173)
T d1e0sa_         165 LTWLTSNY  172 (173)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=1.7e-29  Score=175.96  Aligned_cols=157  Identities=22%  Similarity=0.401  Sum_probs=122.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEE
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+++|.++++....+......    ...+...+.+.+||++|...+...+...+..++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE----EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEE----EEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            589999999999999999999988866555333222    2334566889999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec---HHHHHHHHHHhCCeEEEEccCCCCCHHHHHHH
Q 028381           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT---KKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (210)
                      ..++.++..+..++...+. ......+|+++++||.|+.+.....   .+....++...++++++|||++|.|++++|+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLA-EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             ecChHHHHHHHHHHHHHHH-hhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            9999999999884444443 3455678999999999986543221   12222333445678999999999999999999


Q ss_pred             HHHHH
Q 028381          172 LVLKI  176 (210)
Q Consensus       172 l~~~~  176 (210)
                      |.+++
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.95  E-value=8.6e-28  Score=170.13  Aligned_cols=158  Identities=23%  Similarity=0.351  Sum_probs=119.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .+.+||+|+|.+|||||||++++.++++....++.+.......  .  ....+.+||+++.+.....+...+..++++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV--I--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEE--E--TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEe--e--cceEEEEeccccccccccchhhhhccceeeee
Confidence            4568999999999999999999999988765555554333222  2  34678999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCeEEEEccCCCCCHH
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  166 (210)
                      ++|.++..++..... +...........+.|+++|+||+|++.....  +++....     ...+++++++||++|+|++
T Consensus        89 v~d~~d~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          89 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMTV--AEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             ecccccccchhhhhh-hhhhhhhcccccceEEEEEEEcccccccCcH--HHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            999999999988776 3344444445578999999999998655332  2222222     2335679999999999999


Q ss_pred             HHHHHHHHHH
Q 028381          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      ++|+||.+++
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.95  E-value=7.2e-27  Score=163.73  Aligned_cols=162  Identities=22%  Similarity=0.358  Sum_probs=127.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +.+||+++|++|||||||++++.++.+....++.+......  ..  ..+.+.+||.+|.......+...+...++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETV--TY--KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEE--EE--TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeee--cc--CceEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            45899999999999999999999999887666655444322  22  456788999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHHhCCeEEEEccCCCCCHHHHH
Q 028381           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV---VTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (210)
                      +|+.+..++......+..... .......|+++++||.|+.....   +..+....++...++++++|||++|.||+++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLE-EEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhcchhhhccchhhhhhh-hhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            999999998888774444443 34466789999999999965433   22222233444556789999999999999999


Q ss_pred             HHHHHHHHcC
Q 028381          170 EELVLKILDT  179 (210)
Q Consensus       170 ~~l~~~~~~~  179 (210)
                      ++|++.+.++
T Consensus       159 ~~l~~~l~~k  168 (169)
T d1upta_         159 EWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999988654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=9e-27  Score=165.13  Aligned_cols=167  Identities=18%  Similarity=0.150  Sum_probs=115.8

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSY   82 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~   82 (210)
                      +.+.-.|+|+|.+|||||||+++|++..........+++..............+.+|||||......        .....
T Consensus         2 ~~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           2 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             CccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccc
Confidence            3455689999999999999999999887654444444433333333333345789999999644322        22345


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CeEEEEccCC
Q 028381           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKT  161 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  161 (210)
                      +.++|++++|+|++++.....  ..|...+...  ..++|+++|+||+|+....   .+....+....+ ..++++||++
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~--~~i~~~l~~~--~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~  154 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPED--ELVARALKPL--VGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALD  154 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG--TTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTC
T ss_pred             cccccceeeeechhhhhcccc--cchhhheecc--ccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCC
Confidence            788999999999998765433  3255566543  3468999999999986542   222333444444 4689999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCccc
Q 028381          162 RVNVQQCFEELVLKILDTPSLLA  184 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~~~~~~  184 (210)
                      +.|+++++++|++.+.+.+..++
T Consensus       155 ~~gi~~L~~~i~~~lpe~p~~~p  177 (178)
T d1wf3a1         155 ERQVAELKADLLALMPEGPFFYP  177 (178)
T ss_dssp             HHHHHHHHHHHHTTCCBCCCSSC
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999988766555443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2e-25  Score=155.58  Aligned_cols=152  Identities=22%  Similarity=0.312  Sum_probs=119.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEEC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      ||+++|++|||||||+++|.++++....++.+.+..    ..........+||++|...+...+...+..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            899999999999999999999998776666665443    3333456788999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH------------HHhCCeEEEEccCCCC
Q 028381           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA------------REYGCLFIECSAKTRV  163 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~  163 (210)
                      ++..++..... |...........+.|++++++|.|+....  ...++....            ....+++++|||++|+
T Consensus        78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          78 ADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TCGGGHHHHHH-HHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             cchhhhhhhhH-HHHhhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            99999988877 44445444566789999999999986432  222222221            1223569999999999


Q ss_pred             CHHHHHHHHHH
Q 028381          164 NVQQCFEELVL  174 (210)
Q Consensus       164 ~i~~~~~~l~~  174 (210)
                      |++++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.9e-26  Score=159.16  Aligned_cols=152  Identities=22%  Similarity=0.219  Sum_probs=109.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccCc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRGA   86 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~   86 (210)
                      +||+++|++|||||||+++|++.+.......++.+.......+......+.+||+||......        .....+..+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA   81 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence            799999999999999999999887654444344443333333333345788999999543322        123446789


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |++++++|..+..++..... |...+...  ..++|+++|+||+|+........+       ..+.+++++||+++.|++
T Consensus        82 d~~i~~~d~~~~~~~~~~~~-~~~~~~~~--~~~~~iilv~NK~Dl~~~~~~~~~-------~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          82 DRVLFMVDGTTTDAVDPAEI-WPEFIARL--PAKLPITVVRNKADITGETLGMSE-------VNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             SEEEEEEETTTCCCCSHHHH-CHHHHHHS--CTTCCEEEEEECHHHHCCCCEEEE-------ETTEEEEECCTTTCTTHH
T ss_pred             cccceeeccccccchhhhhh-hhhhhhhc--ccccceeeccchhhhhhhHHHHHH-------hCCCcEEEEECCCCCCHH
Confidence            99999999999888776665 66666543  356899999999998544322111       235689999999999999


Q ss_pred             HHHHHHHHHH
Q 028381          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      +++++|.+.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998753

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.92  E-value=1e-24  Score=154.87  Aligned_cols=158  Identities=18%  Similarity=0.284  Sum_probs=114.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .+..||+++|++|||||||+++|.++.+....++.+.+....  .+++  ..+.+||+.+...+...+...+...+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL--TIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEE--EETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEE--Eecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            567899999999999999999999998877766666555443  3333  567899999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----------------hCCeE
Q 028381           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----------------YGCLF  154 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  154 (210)
                      ++|+++...+......+..... .....++|+++++||.|++..  .....+......                 .++++
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMT-DETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHT-CGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeccCccchHHHHHHHHHhhc-ccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            9999999988887764443333 234567999999999998644  333333333321                 13458


Q ss_pred             EEEccCCCCCHHHHHHHHHHHH
Q 028381          155 IECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       155 ~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      ++|||++|+|++++|+||.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.6e-24  Score=155.23  Aligned_cols=158  Identities=20%  Similarity=0.193  Sum_probs=114.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +.+||+++|+.|||||||+++|..+.++.    .+..    ...++...+.+.+||++|++.+...|..+++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t----~~~~----~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAG----TGIV----ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCC----CSEE----EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCC----ccEE----EEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            46899999999999999999998776643    2221    223344567899999999999999999999999999999


Q ss_pred             EECCCcccHH----------HHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC---------------ceecHHHHHHHH
Q 028381           93 YDVTRRDTFT----------NLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE---------------RVVTKKEGINFA  147 (210)
Q Consensus        93 ~d~~~~~s~~----------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---------------~~~~~~~~~~~~  147 (210)
                      +|+++..++.          .....|...+.. ......|+++++||.|+...               ......++..+.
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~-~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNN-KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTC-GGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcc-cccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            9999887652          233335555543 34567899999999996210               011122221111


Q ss_pred             ----HH-------hCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          148 ----RE-------YGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       148 ----~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                          ..       ..+.+++|||+++.||+++|+.+.+.++++
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence                11       124578999999999999999999988753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=4.9e-24  Score=151.13  Aligned_cols=160  Identities=19%  Similarity=0.098  Sum_probs=105.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccCccE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRGAQG   88 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d~   88 (210)
                      +|+|+|.+|||||||+|+|++............+..............+.+|||||.....       ......+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            5899999999999999999977653332222222222223333344568899999943211       122334678999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381           89 IIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      +++++|..... ...... +...+... ....++|+++|+||+|+...+.  .+...+.....+.+++++||++|.|+++
T Consensus        83 ~~~~~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          83 LLYVLDAADEP-LKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEETTSCH-HHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhccccccc-ccchhh-hhhhhhccccccchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999986542 233222 22222211 1123579999999999965432  2344555666788999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028381          168 CFEELVLKILDT  179 (210)
Q Consensus       168 ~~~~l~~~~~~~  179 (210)
                      +++.|.+.+...
T Consensus       159 L~~~i~~~l~~~  170 (180)
T d1udxa2         159 LKEALHALVRST  170 (180)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhc
Confidence            999998888543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.7e-24  Score=152.24  Aligned_cols=158  Identities=20%  Similarity=0.165  Sum_probs=101.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccchhhcccCc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF---------RTLTSSYYRGA   86 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~~~~   86 (210)
                      .|+++|++|||||||+++|++..........+.+.......+......+.+||++|....         .......+..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            699999999999999999998776544444444444334444445567889999993221         12233456789


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHH
Q 028381           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (210)
                      |+++++.|.+........ . +...+..    .++|+++|+||+|+.++  ...+...++......+++++||++|.|++
T Consensus        82 d~i~~~~~~~~~~~~~~~-~-~~~~l~~----~~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          82 DLVLFVVDGKRGITKEDE-S-LADFLRK----STVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             SEEEEEEETTTCCCHHHH-H-HHHHHHH----HTCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cEEEEeeccccccccccc-c-ccccccc----ccccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            999999998877655432 2 4444443    35799999999998532  12222222222223458999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 028381          167 QCFEELVLKILDTPS  181 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~  181 (210)
                      +++++|++.+.+...
T Consensus       154 ~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         154 TMLETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCC
Confidence            999999999876654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=5.4e-25  Score=158.32  Aligned_cols=161  Identities=18%  Similarity=0.152  Sum_probs=120.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +.+||+++|+.|||||||+++|..+.+. +.||.|.....    +....+.+.+||++|++.+...|..+++.+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeEe
Confidence            4689999999999999999999988874 45677765432    334567899999999999999999999999999999


Q ss_pred             EECCCccc----------HHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc----------------eecHHHHHHH
Q 028381           93 YDVTRRDT----------FTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER----------------VVTKKEGINF  146 (210)
Q Consensus        93 ~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------------~~~~~~~~~~  146 (210)
                      +|+++..+          +......|...+... ...+.|+++++||.|+....                ..+......+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~-~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYP-WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCG-GGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhh-hccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99987643          333344477777653 35678999999999973111                1122222222


Q ss_pred             HH----H------hCCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          147 AR----E------YGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       147 ~~----~------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ..    .      ..+.+++|||+++.||+++|+.+.+.+++.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            22    1      123478999999999999999999988753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.7e-23  Score=148.93  Aligned_cols=161  Identities=24%  Similarity=0.194  Sum_probs=105.2

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccc----------
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFR----------   76 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~----------   76 (210)
                      +.....+||+|+|++|||||||+++|++..........+.+.  ....+..++  ..+.++|+||.....          
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~   80 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKY   80 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCS
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccc
Confidence            344567999999999999999999999876432222122222  222334444  457788999853222          


Q ss_pred             --cchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh----
Q 028381           77 --TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY----  150 (210)
Q Consensus        77 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----  150 (210)
                        ......+..+|++++|+|++.+...... . +...+..    .+.|+|+|+||+|+.........+........    
T Consensus        81 ~~~~~~~~~~~~dvii~v~d~~~~~~~~~~-~-~~~~~~~----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~  154 (186)
T d1mkya2          81 SNYRVVDSIEKADVVVIVLDATQGITRQDQ-R-MAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI  154 (186)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTCCCHHHH-H-HHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG
T ss_pred             hhHHHHHHHhcCCEEEEeecccccchhhHH-H-HHHHHHH----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhccc
Confidence              2233345788999999999876554332 2 4444432    46799999999998655444334433333322    


Q ss_pred             -CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 028381          151 -GCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       151 -~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (210)
                       ..+++++||++|.|+++++++|.+.+.
T Consensus       155 ~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         155 DYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             TTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence             357999999999999999999977664

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=6.9e-24  Score=147.44  Aligned_cols=150  Identities=20%  Similarity=0.173  Sum_probs=101.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc---------cchhhcccC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR---------TLTSSYYRG   85 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~   85 (210)
                      +||+++|.+|||||||+|+|++.+.......++.+.......+......+.+||+||.....         ......+..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK   80 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence            69999999999999999999987654444433333332222233344678899999942211         112223578


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCH
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (210)
                      +|++++|+|++++.......- + ..+      ...++++++||.|+....  ..++... ....+.+++++||++|.|+
T Consensus        81 ad~ii~v~d~~~~~~~~~~~~-~-~~~------~~~~~i~~~~k~d~~~~~--~~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEEDRKI-L-ERI------KNKRYLVVINKVDVVEKI--NEEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             CSEEEEEEETTSCCCHHHHHH-H-HHH------TTSSEEEEEEECSSCCCC--CHHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             CCEEEEEEeCCCCcchhhhhh-h-hhc------ccccceeeeeeccccchh--hhHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            999999999999887654432 2 111      346889999999986543  2222222 1234567999999999999


Q ss_pred             HHHHHHHHHH
Q 028381          166 QQCFEELVLK  175 (210)
Q Consensus       166 ~~~~~~l~~~  175 (210)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998763

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.89  E-value=1.1e-22  Score=143.99  Aligned_cols=162  Identities=14%  Similarity=0.101  Sum_probs=107.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-C-----ceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-T-----IGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG   85 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (210)
                      -+.++|+++|++++|||||+|+|++........ +     .+.+.......+......+.++|++|+..+.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            357899999999999999999999644322221 1     1111111111112233568899999999888888888899


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH--HHHHHHHHH----hCCeEEEEcc
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK--KEGINFARE----YGCLFIECSA  159 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~----~~~~~~~~Sa  159 (210)
                      +|++++|+|+.+......... | ..+.    ..++|+++|+||+|+...+....  +....+...    .+.+++++||
T Consensus        83 ~d~~ilv~d~~~g~~~~~~~~-~-~~~~----~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA  156 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQTGEH-M-LILD----HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  156 (179)
T ss_dssp             CCEEEEEEETTTCSCHHHHHH-H-HHHH----HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             ccccccccccccccchhhhhh-h-hhhh----hcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            999999999998765433221 2 2222    35689999999999975543221  122222222    1357999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcC
Q 028381          160 KTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ++|.|++++++.|.+.+.+.
T Consensus       157 ~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         157 KTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHHHS
T ss_pred             cCCcCHHHHHHHHHhcCCcc
Confidence            99999999999999888553

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.2e-22  Score=145.97  Aligned_cols=159  Identities=19%  Similarity=0.214  Sum_probs=107.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +.+||+++|++|||||||+++|...  ....+|.|....  .+  +.....+.+||++|++.+...|..+++.+++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~f~--~~~~pTiG~~~~--~~--~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMRII--HGQDPTKGIHEY--DF--EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH--HSCCCCSSEEEE--EE--EETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcC--CCCCCeeeeEEE--EE--eeeeeeeeeecccceeeecccccccccccceeEEE
Confidence            4689999999999999999999533  223457775443  23  33557789999999999999999999999999999


Q ss_pred             EECCCccc----------HHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC----------------ceecHHHHHHH
Q 028381           93 YDVTRRDT----------FTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE----------------RVVTKKEGINF  146 (210)
Q Consensus        93 ~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------------~~~~~~~~~~~  146 (210)
                      +|.++..+          +......|...+.. ....++|+++++||.|+...                ..-..+.+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNN-RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTC-GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhC-hhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            99997543          33444424433433 34568999999999997311                01122333333


Q ss_pred             HHHh-----------CCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          147 AREY-----------GCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       147 ~~~~-----------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ....           .+.++++||+++.||+++|+.+.+.+++
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            2221           2446789999999999999999888765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=1.1e-22  Score=144.42  Aligned_cols=151  Identities=19%  Similarity=0.199  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------------ccchh
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF---------------RTLTS   80 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------------~~~~~   80 (210)
                      .|+++|++|||||||+|+|++.+.. ....+++|.....+...+    +.+||+||....               .....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeeccccccccc----ceecccCCceeccccccccccccchhhhhhhh
Confidence            6899999999999999999987653 334555554444444333    578999994211               11223


Q ss_pred             hcccCccEEEEEEECCCcccHHHHH---------HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLS---------DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG  151 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~---------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  151 (210)
                      ..++.+|++++|+|+..........         ..+...+.    ..++|+++|+||+|+.........   .+.....
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~----~~~~p~iiv~NK~D~~~~~~~~~~---~~~~~~~  149 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR----ELDIPTIVAVNKLDKIKNVQEVIN---FLAEKFE  149 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH----HTTCCEEEEEECGGGCSCHHHHHH---HHHHHHT
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH----HcCCCEEEEEeeeehhhhHHHHHH---HHHHHhc
Confidence            3456789999999987543221110         11222222    346899999999997543322111   1222222


Q ss_pred             -------CeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          152 -------CLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       152 -------~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                             ..++++||++|.|+++++++|.+.+.+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   238999999999999999999998864

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=3.6e-21  Score=139.09  Aligned_cols=120  Identities=17%  Similarity=0.262  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhcccCccEEEEEEE
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-TLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~v~d   94 (210)
                      +|+|+|++|||||||+++|+++.+....++.+.+.....+. ++..+.+.+||++|++.+. ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            69999999999999999999998877777666655444332 4556789999999998775 467788899999999999


Q ss_pred             CCCcccH-HHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCc
Q 028381           95 VTRRDTF-TNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        95 ~~~~~s~-~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~  136 (210)
                      +++..++ .....++...+... .....+|++||+||+|++...
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            9987664 34444344444322 234568999999999997543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=1.2e-22  Score=144.53  Aligned_cols=161  Identities=18%  Similarity=0.159  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc----ch---hhcccCc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT----LT---SSYYRGA   86 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~---~~~~~~~   86 (210)
                      .+|+|+|++|||||||+|+|++........ ....+.......+.+ ...+.+|||||......    ..   ...+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            369999999999999999999776432222 111111122222222 23578999999532111    11   1224568


Q ss_pred             cEEEEEEECCCcccHHHHHH--HHHHHHh-hhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCeEEEEccCC
Q 028381           87 QGIIMVYDVTRRDTFTNLSD--VWAKEID-LYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY--GCLFIECSAKT  161 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~--~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~  161 (210)
                      +.++++++............  .+..... ......++|+++|+||+|+.+..    +....+....  +.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCC
Confidence            88888888765543322221  0111111 11223468999999999996532    2223333333  57799999999


Q ss_pred             CCCHHHHHHHHHHHHHcCC
Q 028381          162 RVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~~  180 (210)
                      |.|+++++++|.+.+.+.+
T Consensus       157 g~Gi~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         157 REGLRELLFEVANQLENTP  175 (185)
T ss_dssp             SSTTHHHHHHHHHHHTSCC
T ss_pred             CCCHHHHHHHHHHhhhhCC
Confidence            9999999999999885433

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1.1e-21  Score=143.24  Aligned_cols=160  Identities=19%  Similarity=0.186  Sum_probs=115.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .+.+||+++|+.|||||||++++..+.+.   +|.|...  ..+.++  .+.+.+||++|+..+...|..++..++++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~~---pTiG~~~--~~~~~~--~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHVV---LTSGIFE--TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHCC---CCCSCEE--EEEEET--TEEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCcC---CCCCeEE--EEEEEC--cEEEEEEecCccceeccchhhhcccccceEE
Confidence            35689999999999999999999876553   5666443  333443  4778999999999999999999999999999


Q ss_pred             EEECCCcc----------cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce------------------------
Q 028381           92 VYDVTRRD----------TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV------------------------  137 (210)
Q Consensus        92 v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------------------  137 (210)
                      ++|.++..          .+.....+|...+.. ....++|++|++||+|+.+...                        
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~-~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~  155 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNN-RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT  155 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC-GGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcC-hhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccc
Confidence            99988642          334444435555544 3446799999999999832210                        


Q ss_pred             ------ecHHHHHHHHH-----Hh--------CCeEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028381          138 ------VTKKEGINFAR-----EY--------GCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       138 ------~~~~~~~~~~~-----~~--------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                            ....++..+..     ..        .+.++++||.++.+|+.+|+.+.+.+++.
T Consensus       156 ~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         156 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             ccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                  01222222221     11        13367899999999999999988877653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.85  E-value=2.4e-21  Score=141.91  Aligned_cols=156  Identities=17%  Similarity=0.102  Sum_probs=102.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEE--------------EEECCeEEEEEEEeCCCccccccch
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKY--------------VDVGGKKLKLAIWDTAGQERFRTLT   79 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~--------------~~~~~~~~~~~l~D~~g~~~~~~~~   79 (210)
                      |+|+|++++|||||+++|++........   +.........              ..+......+.++||||+..+....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998643211110   1110011000              1122344578899999999988888


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec--------------------
Q 028381           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT--------------------  139 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--------------------  139 (210)
                      ...+..+|++|+|+|+.+.-.-....  .+..+.    ..++|+|+|+||+|+.......                    
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~~--~~~~~~----~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~  161 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQE--ALNILR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL  161 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccchhH--HHHHhh----cCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHH
Confidence            88889999999999999865544332  222332    3568999999999985433211                    


Q ss_pred             HHHHHHHHH---H---------------hCCeEEEEccCCCCCHHHHHHHHHHHHHc
Q 028381          140 KKEGINFAR---E---------------YGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       140 ~~~~~~~~~---~---------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      .....+...   .               ..++++++||++|.|++++++.+.+...+
T Consensus       162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            000111111   0               11468999999999999999998887644

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.85  E-value=2.8e-21  Score=138.40  Aligned_cols=162  Identities=15%  Similarity=0.116  Sum_probs=107.1

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------CceeeeEEEEEE-------------------ECCeEEEEE
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP------TIGVDFKVKYVD-------------------VGGKKLKLA   65 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~------~~~~~~~~~~~~-------------------~~~~~~~~~   65 (210)
                      +...++|+++|+.++|||||+++|++........      +....+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            4567899999999999999999998643211110      111111111111                   122346789


Q ss_pred             EEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHH
Q 028381           66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEG  143 (210)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~  143 (210)
                      ++|+||+..|.......+..+|++++|+|+.+........+ .+......   ...+++++.||+|+.+....  ..+..
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e-~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~  157 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQII---GQKNIIIAQNKIELVDKEKALENYRQI  157 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHH-HHHHHHHh---cCccceeeeecccchhhHHHHHHHHHH
Confidence            99999999999888888899999999999998754333333 22223221   12457889999998654322  22233


Q ss_pred             HHHHHHh---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          144 INFAREY---GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       144 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      ..+....   .++++++||++|.|++++++.+.+.+
T Consensus       158 ~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         158 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            3443333   36799999999999999999988754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=8.3e-21  Score=133.96  Aligned_cols=165  Identities=18%  Similarity=0.097  Sum_probs=104.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccchhhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF---------RTLTSSY   82 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~   82 (210)
                      .+--.|+|+|.+|||||||+|+|++.+..........+..............+..||++|....         .......
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccc
Confidence            4556799999999999999999998765433321111111111111112334566788874321         1122233


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CeEEEEccCC
Q 028381           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKT  161 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  161 (210)
                      ...+++++++.|.........  . +...+.    ....|.++|+||.|..............+....+ .+++++||++
T Consensus        83 ~~~~~~~l~~~d~~~~~~~~~--~-~~~~l~----~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  155 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTPDDE--M-VLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  155 (179)
T ss_dssp             CCCEEEEEEEEETTCCCHHHH--H-HHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             hhhcceeEEEEecCccchhHH--H-HHHHhh----hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcC
Confidence            456788889999776443222  2 222222    3456889999999986654444444555555555 5799999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcc
Q 028381          162 RVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      |.|+++++++|.+.+.+.+..+
T Consensus       156 g~gi~~L~~~i~~~lpe~~~~y  177 (179)
T d1egaa1         156 GLNVDTIAAIVRKHLPEATHHF  177 (179)
T ss_dssp             TTTHHHHHHHHHTTCCBCCCSS
T ss_pred             CCCHHHHHHHHHHhCCCCCCCC
Confidence            9999999999998876665544

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1.4e-20  Score=134.69  Aligned_cols=158  Identities=15%  Similarity=0.124  Sum_probs=95.9

Q ss_pred             cccceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc------------
Q 028381            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF------------   75 (210)
Q Consensus         9 ~~~~~~~ki~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------------   75 (210)
                      -+.....+|+|+|++|||||||+|+|++... .......+.+...........   +.+.|++|....            
T Consensus        18 ~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~   94 (195)
T d1svia_          18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDE---LHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTT---EEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccccc---ceEEEEEeeccccccccccchhhh
Confidence            3444456899999999999999999997653 333334444443333333332   334566552111            


Q ss_pred             -ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH----h
Q 028381           76 -RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE----Y  150 (210)
Q Consensus        76 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~  150 (210)
                       ...+...+..+|++++++|++++..-... . ++..+..    .++|+++|+||+|+........ ....+...    .
T Consensus        95 ~~~~~~~~~~~~~~vi~viD~~~~~~~~~~-~-~~~~l~~----~~~piivv~NK~D~~~~~~~~~-~~~~~~~~l~~~~  167 (195)
T d1svia_          95 MIETYITTREELKAVVQIVDLRHAPSNDDV-Q-MYEFLKY----YGIPVIVIATKADKIPKGKWDK-HAKVVRQTLNIDP  167 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHH-H-HHHHHHH----TTCCEEEEEECGGGSCGGGHHH-HHHHHHHHHTCCT
T ss_pred             HHhhhhccccchhhhhhhhhcccccccccc-c-ccccccc----ccCcceechhhccccCHHHHHH-HHHHHHHHhcccC
Confidence             11222344577999999999876543222 2 4455543    4689999999999854433322 12222222    3


Q ss_pred             CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          151 GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       151 ~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      ..+++++||++|.|+++++++|.+.+
T Consensus       168 ~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         168 EDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            45799999999999999999998876

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=7.4e-20  Score=131.90  Aligned_cols=160  Identities=18%  Similarity=0.111  Sum_probs=102.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--------CceeeeEEEEEE----------------------ECCeEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--------TIGVDFKVKYVD----------------------VGGKKL   62 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~--------~~~~~~~~~~~~----------------------~~~~~~   62 (210)
                      .-++|+++|+.++|||||+++|++........        ..+.........                      ......
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            34899999999999999999998632211000        011000000000                      011234


Q ss_pred             EEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH--
Q 028381           63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK--  140 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--  140 (210)
                      .+.++|+||+..|.......+..+|++|+|+|+.+.-.....+. .+.....   ..-.|+||+.||+|+........  
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e-~~~~~~~---~~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGI---IGVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHH-HHHHHHH---cCCceeeeccccCCCccchHHHHHH
Confidence            68999999999998888888899999999999998743333333 2222222   12248889999999965432221  


Q ss_pred             HHHHHHHHHh---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          141 KEGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       141 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      .....+....   +++++++||++|.|++++++.|...+
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            1222222222   46799999999999999999888765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.82  E-value=1.6e-20  Score=133.90  Aligned_cols=157  Identities=16%  Similarity=0.079  Sum_probs=108.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC-------C--------CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD-------N--------FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL   78 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (210)
                      -++|+++|++++|||||+++|++.       .        ........+.+.......+......+.++|+||+..|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            489999999999999999999741       0        0111113345555555556666678899999999999888


Q ss_pred             hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee---cHHHHHHHHHHhC----
Q 028381           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV---TKKEGINFAREYG----  151 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~----  151 (210)
                      ....+..+|++++|+|+.+...-+.... | ..+..   ..-.|+||+.||+|+......   ...++..+....+    
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~QT~~~-~-~~a~~---~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMPQTREH-L-LLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHHHH-H-HHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHhhcCeEEEEEEcCCCCchhHHHH-H-HHHHH---hcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            8888899999999999998765443322 2 22222   123578899999998643321   1223444444443    


Q ss_pred             -CeEEEEccCCC----------CCHHHHHHHHHHH
Q 028381          152 -CLFIECSAKTR----------VNVQQCFEELVLK  175 (210)
Q Consensus       152 -~~~~~~Sa~~~----------~~i~~~~~~l~~~  175 (210)
                       ++++++||++|          .++.++++.+.+.
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence             57999999988          4778877776554

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.79  E-value=9.6e-19  Score=126.94  Aligned_cols=154  Identities=21%  Similarity=0.176  Sum_probs=101.3

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHHhcCC--CCC------------------------------CCCCceeeeEEEEE
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDN--FEE------------------------------LSPTIGVDFKVKYV   55 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l~~~~--~~~------------------------------~~~~~~~~~~~~~~   55 (210)
                      +.+....+||+++|+.++|||||+.+|+...  ...                              .....+.+......
T Consensus         3 ~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~   82 (222)
T d1zunb3           3 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR   82 (222)
T ss_dssp             STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred             ccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEE
Confidence            4567788999999999999999999996321  100                              00011112222222


Q ss_pred             EECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCC-cEEEEEeCCCCCC
Q 028381           56 DVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC-IKLLVGNKVDKES  134 (210)
Q Consensus        56 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~  134 (210)
                      .+......+.++|+||+..+.......+..+|++++|+|+.+...-+.... + ....    ..++ .+|++.||+|+.+
T Consensus        83 ~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~-~-~~~~----~~gv~~iiv~vNK~D~~~  156 (222)
T d1zunb3          83 YFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH-S-YIAS----LLGIKHIVVAINKMDLNG  156 (222)
T ss_dssp             EEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH-H-HHHH----HTTCCEEEEEEECTTTTT
T ss_pred             EEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH-H-HHHH----HcCCCEEEEEEEcccccc
Confidence            333344678899999999999888888999999999999998765544332 2 2222    2344 4788999999976


Q ss_pred             CceecH----HHHHHHHHHhC-----CeEEEEccCCCCCHHH
Q 028381          135 ERVVTK----KEGINFAREYG-----CLFIECSAKTRVNVQQ  167 (210)
Q Consensus       135 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  167 (210)
                      ......    +++..+....+     ++++++||.+|.|+.+
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         157 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             ccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            443222    23344554444     3589999999998843

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=1.4e-19  Score=130.06  Aligned_cols=141  Identities=17%  Similarity=0.151  Sum_probs=94.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC--------CC-----CCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDN--------FE-----ELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~--------~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      .++|+++|++++|||||+++|+...        ..     ...+   ..+.+.......+......++++||||+..|..
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~   82 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK   82 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHH
Confidence            4899999999999999999996320        00     0000   114444444445555566788999999999999


Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHhC--
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREYG--  151 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~--  151 (210)
                      .....+..+|++|+|+|+.+....+..+. |. ...    ..++| +||++||+|+.+....   ..+++..+....+  
T Consensus        83 ~~~~~~~~aD~avlVvda~~Gv~~qt~~~-~~-~~~----~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  156 (204)
T d2c78a3          83 NMITGAAQMDGAILVVSAADGPMPQTREH-IL-LAR----QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHTTCSSEEEEEETTTCCCHHHHHH-HH-HHH----HTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHCCEEEEEEECCCCCcHHHHHH-HH-HHH----HcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            88888999999999999999877655443 32 222    23555 6778999998653321   1233444444433  


Q ss_pred             ---CeEEEEccC
Q 028381          152 ---CLFIECSAK  160 (210)
Q Consensus       152 ---~~~~~~Sa~  160 (210)
                         ++++..|+.
T Consensus       157 ~~~i~~i~~sa~  168 (204)
T d2c78a3         157 GDEVPVIRGSAL  168 (204)
T ss_dssp             TTTSCEEECCHH
T ss_pred             cccceeeeeech
Confidence               458888875

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=1.7e-17  Score=123.37  Aligned_cols=115  Identities=18%  Similarity=0.229  Sum_probs=82.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC--C---------------CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD--N---------------FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      +.-+|+++|+.++|||||+.+++..  .               +.+.....+.++......+...+..++++||||+..|
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF   84 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence            3457999999999999999999631  1               1111111222232333344445677999999999999


Q ss_pred             ccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      .......++.+|++|+|+|+.+.-......- |..     +...++|.++++||+|.+
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~-w~~-----a~~~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQ-----AEKYKVPRIAFANKMDKT  136 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHHH-HHH-----HHTTTCCEEEEEECTTST
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHHH-HHH-----HHHcCCCEEEEEeccccc
Confidence            9999999999999999999999876655544 533     224679999999999974

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2.4e-17  Score=116.48  Aligned_cols=166  Identities=14%  Similarity=0.057  Sum_probs=90.2

Q ss_pred             cccccccceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc------
Q 028381            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------   77 (210)
Q Consensus         5 ~~~~~~~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------   77 (210)
                      +-.+.+.+..++|+++|.+|||||||+|+|++.+...... ...................+..++.++......      
T Consensus         7 ~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (188)
T d1puia_           7 DIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQ   86 (188)
T ss_dssp             SGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHH
T ss_pred             ChhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhh
Confidence            3455667888999999999999999999999877644433 222222222222222222232223322111111      


Q ss_pred             ----chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH--HHHHHHHHHh-
Q 028381           78 ----LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK--KEGINFAREY-  150 (210)
Q Consensus        78 ----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~-  150 (210)
                          .........+.++.+.+...........  +.....    ....++++++||.|+........  +...+..... 
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~  160 (188)
T d1puia_          87 RALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN  160 (188)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred             hhhhhhhhhhhheeEEEEeecccccchhHHHH--HHHHhh----hccccccchhhhhhccCHHHHHHHHHHHHHHHHhhC
Confidence                1111233455666777776655443332  333333    24568899999999865433221  2222222222 


Q ss_pred             -CCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          151 -GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       151 -~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                       ..+++++||++|.|++++++.|.+.+
T Consensus       161 ~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         161 GDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             SCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence             34689999999999999999886654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=6.8e-18  Score=121.61  Aligned_cols=118  Identities=20%  Similarity=0.239  Sum_probs=81.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc----ccCccE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY----YRGAQG   88 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~----~~~~d~   88 (210)
                      +..+|+++|++|||||||+|+|+++++....   ...  .....+......+.+||+||+..+...+...    +..++.
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~t---t~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV---VSQ--EPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBC---CCS--SCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCeE---Eec--ceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            4458999999999999999999988765322   111  1223344455678899999988766554443    455689


Q ss_pred             EEEEEECCC-cccHHHHHHHHHH-HH--hhhccCCCCcEEEEEeCCCCCCCc
Q 028381           89 IIMVYDVTR-RDTFTNLSDVWAK-EI--DLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        89 ~i~v~d~~~-~~s~~~~~~~~~~-~~--~~~~~~~~~p~ivv~nK~Dl~~~~  136 (210)
                      +++++|+.+ ..++..... |+. .+  .......++|+++|+||+|+....
T Consensus        77 ~i~~vd~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cceEEEEecccccHHHHHH-HHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            999999775 455665555 332 11  122446789999999999996543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.69  E-value=2.9e-17  Score=120.88  Aligned_cols=154  Identities=19%  Similarity=0.129  Sum_probs=83.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCC--C----------------------------CCCCCceeeeEEEEEEECCeE
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF--E----------------------------ELSPTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~   61 (210)
                      ...++|+++|+.++|||||+.+|+...-  .                            ......+.+.......+....
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            4567999999999999999999942110  0                            000011112211222223344


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccH------HHHHHHHHHHHhhhccCCCC-cEEEEEeCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF------TNLSDVWAKEIDLYSTNQDC-IKLLVGNKVDKES  134 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~  134 (210)
                      ..+.++|+||+..+..........+|++++|+|+.+...-      ....+ .+....    ..++ +++++.||+|++.
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e-~l~l~~----~~~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLAR----TQGINHLVVVINKMDEPS  176 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHH----HTTCSSEEEEEECTTSTT
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHH-HHHHHH----HcCCCeEEEEEEcCCCCc
Confidence            6789999999999999888889999999999999875211      01222 112222    1234 4779999999864


Q ss_pred             Cce--ecHH----HHHHHHHHh-------CCeEEEEccCCCCCHHHHHH
Q 028381          135 ERV--VTKK----EGINFAREY-------GCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus       135 ~~~--~~~~----~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~  170 (210)
                      ...  ...+    +...+....       .++++++||++|+||.++++
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            321  1111    222222222       35799999999999976543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=4.8e-18  Score=124.54  Aligned_cols=150  Identities=15%  Similarity=0.113  Sum_probs=97.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC--CC----------------CC------------CCCceeeeEEEEEEECCeEE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDN--FE----------------EL------------SPTIGVDFKVKYVDVGGKKL   62 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~--~~----------------~~------------~~~~~~~~~~~~~~~~~~~~   62 (210)
                      ..++|+++|+.++|||||+.+|+...  ..                ..            ....+.+.......+.....
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~   84 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   84 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence            45899999999999999999996310  00                00            00112223222233344557


Q ss_pred             EEEEEeCCCccccccchhhcccCccEEEEEEECCCcccH------HHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCC
Q 028381           63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF------TNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESE  135 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~  135 (210)
                      .++|+|+|||..|.......+..+|++|+|+|+.....-      ......| ....    ..++| +||++||+|+.+.
T Consensus        85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~-~~~~----~~gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAF----TLGVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHH----HTTCCEEEEEEECGGGGTT
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH-HHHH----HcCCCeEEEEEECCCCCCC
Confidence            899999999999999989999999999999999875210      1122212 1122    23444 7889999998654


Q ss_pred             ceecH----HHHHHHHHHhC-----CeEEEEccCCCCCHHH
Q 028381          136 RVVTK----KEGINFAREYG-----CLFIECSAKTRVNVQQ  167 (210)
Q Consensus       136 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  167 (210)
                      .....    ++...+....+     ++++++|+..|.|+.+
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            43222    33344444444     4589999999988654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.68  E-value=1.7e-16  Score=117.58  Aligned_cols=113  Identities=13%  Similarity=0.166  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------------C---CceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS--------------P---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~~--------------~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      -+|+++|+.++|||||+.+|+...-....              +   ..+.+.......+...+.+++++||||+..|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            36999999999999999999632110000              0   111222222233333456789999999999999


Q ss_pred             chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      .....++.+|++|+|+|+.+.-....... |....     ..++|.++++||+|..
T Consensus        83 e~~~al~~~D~avlvvda~~Gv~~~t~~~-~~~~~-----~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEAGVQVGTERA-WTVAE-----RLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHH-----HTTCCEEEEEECGGGC
T ss_pred             hhhhhhcccCceEEEeeccCCccchhHHH-HHhhh-----hccccccccccccccc
Confidence            88899999999999999998877665554 54322     3568999999999964

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.66  E-value=3.5e-17  Score=119.15  Aligned_cols=150  Identities=19%  Similarity=0.201  Sum_probs=92.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC------------------------------CCCCCCceeeeEEEEEEECCeEEE
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNF------------------------------EELSPTIGVDFKVKYVDVGGKKLK   63 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   63 (210)
                      .++|+++|+.++|||||+.+|+...-                              .......+.+.......++.....
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            58999999999999999999853100                              000011222333333344455678


Q ss_pred             EEEEeCCCccccccchhhcccCccEEEEEEECCCcccH------HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-
Q 028381           64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF------TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-  136 (210)
Q Consensus        64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-  136 (210)
                      ++++|+|||..|.......++-+|++|+|+|+.+...-      ....+ .+.....   ..-.++|++.||+|+.... 
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e-~l~~~~~---~~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTRE-HIILAKT---MGLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHH-HHHHHHH---TTCTTCEEEEECGGGSSSTT
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHH-HHHHHHH---hCCCceEEEEEcccCCCccc
Confidence            99999999999999999999999999999999986311      11211 1111111   1224678899999986422 


Q ss_pred             -ee----cHHHHHHHHHHhC-----CeEEEEccCCCCCHHH
Q 028381          137 -VV----TKKEGINFAREYG-----CLFIECSAKTRVNVQQ  167 (210)
Q Consensus       137 -~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  167 (210)
                       ..    ...++..+....+     ++++++||..|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence             11    1122334434333     4689999999998853

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.60  E-value=7.8e-15  Score=108.65  Aligned_cols=125  Identities=15%  Similarity=0.090  Sum_probs=76.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeEEEEEEEeCCCcccccc-------chh--
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKKLKLAIWDTAGQERFRT-------LTS--   80 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~--   80 (210)
                      ...++|+++|.+|+|||||+|.+++..........+.|...  .....++  ..+.++||||......       ...  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            56799999999999999999999998766555533333332  3334444  5688999999532211       111  


Q ss_pred             hcccCccEEEEEEECCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec
Q 028381           81 SYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT  139 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  139 (210)
                      ......+++++|++++... +...... +......+....-.+++||.||.|...+....
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~-l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLV-AKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHH-HHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHH-HHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence            1123568999999887642 2222111 22222222223335789999999986554443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=1.5e-14  Score=110.50  Aligned_cols=114  Identities=19%  Similarity=0.269  Sum_probs=80.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC--C----------CCCCC---CCceeeeE--EEEEEE--------------CCeE
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD--N----------FEELS---PTIGVDFK--VKYVDV--------------GGKK   61 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~--~----------~~~~~---~~~~~~~~--~~~~~~--------------~~~~   61 (210)
                      ..-+|+|+|+.++|||||+.+|+..  .          +....   ..-+.+..  ...+..              ++..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            3346999999999999999999621  0          00000   01111111  111111              4467


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (210)
                      +.++++||||+..+.......++.+|++++|+|+.++-......- |....     ..++|+++++||+|.
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~-~~~a~-----~~~~p~i~viNKiDr  160 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQAL-----GERIKPVVVINKVDR  160 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHH-----HTTCEEEEEEECHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHH-HHHHH-----HcCCCeEEEEECccc
Confidence            889999999999999999999999999999999999877665544 44333     356899999999997

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=3.8e-14  Score=111.18  Aligned_cols=159  Identities=19%  Similarity=0.218  Sum_probs=93.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC----CCceeeeEEEEEEECCeEEEEEEEeCCCcccccc-----chhhcc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS----PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-----LTSSYY   83 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~   83 (210)
                      ..++|+|+|.+|+|||||+|+|.|.......    ...+++.....+... ....+.+|||||......     .....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            4699999999999999999999985432211    122233333333322 223478999999543322     122335


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC-------CCceecHHH----H----HHHHH
Q 028381           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE-------SERVVTKKE----G----INFAR  148 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~----~----~~~~~  148 (210)
                      ..+|.++++.|..-  +-... . +...+..    .++|+++|.||+|..       .......+.    +    .....
T Consensus       134 ~~~d~~l~~~~~~~--~~~d~-~-l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         134 YEYDFFIIISATRF--KKNDI-D-IAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             GGCSEEEEEESSCC--CHHHH-H-HHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hcceEEEEecCCCC--CHHHH-H-HHHHHHH----cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            67888888877432  22222 1 3444443    468999999999962       111122211    1    22223


Q ss_pred             HhCC---eEEEEccCCC--CCHHHHHHHHHHHHHcCC
Q 028381          149 EYGC---LFIECSAKTR--VNVQQCFEELVLKILDTP  180 (210)
Q Consensus       149 ~~~~---~~~~~Sa~~~--~~i~~~~~~l~~~~~~~~  180 (210)
                      ..++   ++|.+|..+.  .++..+.+.+.+.+.+..
T Consensus       206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence            3333   4788887643  489999998888775443

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.41  E-value=4.9e-13  Score=101.63  Aligned_cols=152  Identities=11%  Similarity=0.095  Sum_probs=91.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC------C--------CCCC------------CC-CceeeeEEEEEEECC-----
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD------N--------FEEL------------SP-TIGVDFKVKYVDVGG-----   59 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~------~--------~~~~------------~~-~~~~~~~~~~~~~~~-----   59 (210)
                      ...++|.|.|+||+|||||+++|...      +        .+..            .. .....++.......+     
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            46799999999999999999998621      0        0000            00 111122222221111     


Q ss_pred             -------------eEEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEE
Q 028381           60 -------------KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV  126 (210)
Q Consensus        60 -------------~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv  126 (210)
                                   ..+.+.|++|.|.......   ...-+|.+++|......+..+..+. -..         ..+=++|
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~-gil---------E~aDi~v  195 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKK-GIF---------ELADMIA  195 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCT-THH---------HHCSEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhh-hHh---------hhhheee
Confidence                         1246778888886544432   3344999999999998776554422 111         1234899


Q ss_pred             EeCCCCCCCceecHHHHHHHHHH----------hCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          127 GNKVDKESERVVTKKEGINFARE----------YGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       127 ~nK~Dl~~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      +||.|+.............+...          +..+++.+||+++.|+++++++|.+..
T Consensus       196 vNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         196 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            99999876655443333233222          245699999999999999999997654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.41  E-value=2.9e-14  Score=104.49  Aligned_cols=114  Identities=16%  Similarity=-0.012  Sum_probs=67.2

Q ss_pred             EEEEEEeCCCccccccchhhc-----ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028381           62 LKLAIWDTAGQERFRTLTSSY-----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (210)
                      ..+.++|+||+..+.......     ....+.+++++|+.....-......++..... ......|.++|+||+|+....
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLI-DLRLGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHH-HHHHTSCEEEEECCGGGCCHH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHH-HHHhCCCceeeeeccccccHH
Confidence            347888999987654322221     22456899999977544333222212111111 112357899999999986543


Q ss_pred             eecHH--------------------------HHHHHHHH--hCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          137 VVTKK--------------------------EGINFARE--YGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       137 ~~~~~--------------------------~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      .....                          .......+  ..++++++||++|+|++++++.|.+..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            21110                          00011111  246799999999999999999988753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=8.6e-13  Score=100.36  Aligned_cols=152  Identities=20%  Similarity=0.218  Sum_probs=84.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc------CCC-----CCCCC-C---------------ceeeeEEEEEEECCe----
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTS------DNF-----EELSP-T---------------IGVDFKVKYVDVGGK----   60 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~------~~~-----~~~~~-~---------------~~~~~~~~~~~~~~~----   60 (210)
                      .+.++|.|.|+||||||||+++|..      .+.     .+.++ +               .....+.......+.    
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~  131 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  131 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence            4689999999999999999999862      111     01111 0               011111111111110    


Q ss_pred             --------------EEEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEE
Q 028381           61 --------------KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV  126 (210)
Q Consensus        61 --------------~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv  126 (210)
                                    .+.+.+++|.|.....   ..+...+|.+++|.+....+..+.... ....+         +-++|
T Consensus       132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~-gi~e~---------aDi~V  198 (327)
T d2p67a1         132 SQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK-GLMEV---------ADLIV  198 (327)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH-HHHHH---------CSEEE
T ss_pred             hhhhhHHHHHHHhcCCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhch-hhhcc---------ccEEE
Confidence                          1245566666643322   234456899999998877766554433 22111         33788


Q ss_pred             EeCCCCCCCceecH--HHHHHHHH-------HhCCeEEEEccCCCCCHHHHHHHHHHHH
Q 028381          127 GNKVDKESERVVTK--KEGINFAR-------EYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       127 ~nK~Dl~~~~~~~~--~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (210)
                      +||.|++.......  .+......       .+..+++.|||.+|.|++++++.|.+..
T Consensus       199 vNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         199 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             EEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            99999875433221  11122111       1234699999999999999999997644

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.23  E-value=9.2e-11  Score=87.41  Aligned_cols=83  Identities=25%  Similarity=0.226  Sum_probs=51.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEE----------ECCeE---EEEEEEeCCCccc---
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVD----------VGGKK---LKLAIWDTAGQER---   74 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~-~~~~--~~~~~~~~~~~~----------~~~~~---~~~~l~D~~g~~~---   74 (210)
                      .+||.++|.|+||||||++++++.... ..||  |.........+.          ++..+   ..+.++|+||.-.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            379999999999999999999976542 3334  333333332221          01111   2578899999422   


Q ss_pred             ----cccchhhcccCccEEEEEEECC
Q 028381           75 ----FRTLTSSYYRGAQGIIMVYDVT   96 (210)
Q Consensus        75 ----~~~~~~~~~~~~d~~i~v~d~~   96 (210)
                          ........++++|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                1222344578999999999864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.19  E-value=1.5e-10  Score=86.98  Aligned_cols=84  Identities=23%  Similarity=0.190  Sum_probs=56.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCC--CceeeeEEEEEEECC---------------eEEEEEEEeCCCc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF--EELSP--TIGVDFKVKYVDVGG---------------KKLKLAIWDTAGQ   72 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~---------------~~~~~~l~D~~g~   72 (210)
                      ...++|+++|.|+||||||++.+++...  ...+|  |........  .+..               ....+.+.|.||.
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v--~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGL   85 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKV--AVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   85 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEE--EECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEE--eccccchhhhhhcccCCceecccceeeecccc
Confidence            4568999999999999999999997643  34455  223223322  2222               1246888999984


Q ss_pred             ccc-------ccchhhcccCccEEEEEEECCC
Q 028381           73 ERF-------RTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        73 ~~~-------~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                      ..-       .......++.+|+++.|+|+.+
T Consensus        86 v~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          86 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            321       2234455789999999999865

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=6.6e-10  Score=84.30  Aligned_cols=83  Identities=25%  Similarity=0.291  Sum_probs=46.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--Cc----eeeeEEEEE----------------EECCeEEEEEEEeCCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TI----GVDFKVKYV----------------DVGGKKLKLAIWDTAG   71 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~-~~~~~--~~----~~~~~~~~~----------------~~~~~~~~~~l~D~~g   71 (210)
                      .+|+++|.|+||||||+|.|++... ...+|  |.    |.+......                ........+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4799999999999999999997653 22333  11    221111100                0112346799999999


Q ss_pred             ccc-------cccchhhcccCccEEEEEEECCC
Q 028381           72 QER-------FRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        72 ~~~-------~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                      .-.       ........++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            422       11222334678999999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=2.1e-09  Score=80.63  Aligned_cols=117  Identities=24%  Similarity=0.253  Sum_probs=68.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEE-----------CC----------------------
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK-VKYVDV-----------GG----------------------   59 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~-----------~~----------------------   59 (210)
                      ..+|+|+|..++|||||+|+|++.++.+....+.+... ...+.-           .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            44899999999999999999999886433332211110 001000           00                      


Q ss_pred             -----------------eEEEEEEEeCCCcccc-------------ccchhhcccCcc-EEEEEEECCCcccHHHHHHHH
Q 028381           60 -----------------KKLKLAIWDTAGQERF-------------RTLTSSYYRGAQ-GIIMVYDVTRRDTFTNLSDVW  108 (210)
Q Consensus        60 -----------------~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~  108 (210)
                                       ....+.++|+||....             ..+...++...+ ++++|.++....+...... +
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~-~  184 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK-I  184 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH-H
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHH-H
Confidence                             0113789999994321             122334455555 5566777766555544433 4


Q ss_pred             HHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381          109 AKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus       109 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      ...+.    ....++++|.||+|....
T Consensus       185 ~~~~~----~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         185 AKEVD----PQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHC----TTCSSEEEEEECGGGSCT
T ss_pred             HHHhC----cCCCceeeEEeccccccc
Confidence            44332    344678999999998544

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.94  E-value=1.5e-09  Score=81.77  Aligned_cols=29  Identities=28%  Similarity=0.468  Sum_probs=24.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEEL   42 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~~~~~~   42 (210)
                      ..+|+|+|..++|||||+|.|++.++.+.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~   52 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPR   52 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence            45899999999999999999998876433

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.90  E-value=7.8e-10  Score=82.04  Aligned_cols=59  Identities=29%  Similarity=0.447  Sum_probs=39.8

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      ....++|+|+|.||||||||+|+|.+.+...+.+.+|.|.....+..+.   .+.++||||.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCC---CeEEecCCCc
Confidence            4567999999999999999999999998888888888888766666544   3788999995

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=3.5e-07  Score=64.98  Aligned_cols=86  Identities=20%  Similarity=0.166  Sum_probs=59.3

Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH--hCCeEEEEc
Q 028381           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE--YGCLFIECS  158 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~S  158 (210)
                      -...+.|.+++|+++.+|..-....+.|+....    ..+++.+||.||+||.+....  +....+...  .+.+++.+|
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~--~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAE----KNELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHH----HTTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECC
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HcCCCEEEEEeCcccCCHHHH--HHHHHhhcccccceeEEEec
Confidence            356789999999999886543333333554444    357899999999999654322  222333332  346799999


Q ss_pred             cCCCCCHHHHHHHH
Q 028381          159 AKTRVNVQQCFEEL  172 (210)
Q Consensus       159 a~~~~~i~~~~~~l  172 (210)
                      ++++.|++++..++
T Consensus        80 a~~~~g~~~L~~~l   93 (225)
T d1u0la2          80 AKTGMGIEELKEYL   93 (225)
T ss_dssp             TTTCTTHHHHHHHH
T ss_pred             cccchhHhhHHHHh
Confidence            99999999987765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=2.3e-07  Score=65.93  Aligned_cols=59  Identities=25%  Similarity=0.146  Sum_probs=36.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCC---CC----CceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNFEEL---SP----TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      -..+|+|++|||||||+|+|.+......   +.    ...+|.....+.+++.   -.++||||...+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            3568999999999999999986542211   11    2234444555566543   3567999965443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.30  E-value=2.9e-06  Score=57.89  Aligned_cols=23  Identities=30%  Similarity=0.718  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      +||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999999853

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.23  E-value=6e-07  Score=63.12  Aligned_cols=91  Identities=12%  Similarity=0.131  Sum_probs=52.0

Q ss_pred             EEEEEEeCCCccccccc----hhhc---c-----cCccEEEEEEECCCccc-HHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028381           62 LKLAIWDTAGQERFRTL----TSSY---Y-----RGAQGIIMVYDVTRRDT-FTNLSDVWAKEIDLYSTNQDCIKLLVGN  128 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~----~~~~---~-----~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~p~ivv~n  128 (210)
                      +.+.++||+|.......    +..+   +     ...+-+++|+|++.... ...+.. +...+.        +--++.|
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~-~~~~~~--------~~~lI~T  159 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKK-FHEAVG--------LTGVIVT  159 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHH-HHHHHC--------CSEEEEE
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHH-hhhccC--------CceEEEe
Confidence            46889999996544332    1111   1     24567899999887643 222222 222221        1247899


Q ss_pred             CCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381          129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus       129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      |.|....    .-.+..+....+.|+..++.  |.+.++
T Consensus       160 KlDet~~----~G~~l~~~~~~~~Pi~~i~~--Gq~p~D  192 (207)
T d1okkd2         160 KLDGTAK----GGVLIPIVRTLKVPIKFVGV--GEGPDD  192 (207)
T ss_dssp             CTTSSCC----CTTHHHHHHHHCCCEEEEEC--SSSTTC
T ss_pred             ccCCCCC----ccHHHHHHHHHCCCEEEEeC--CCChHh
Confidence            9996422    12355667788999777763  444443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.23  E-value=1.2e-06  Score=64.44  Aligned_cols=90  Identities=9%  Similarity=0.019  Sum_probs=63.8

Q ss_pred             hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCeEEEEc
Q 028381           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (210)
                      ....+..+|++++|.|+.++.+..+-.  +...+      .++|.++|+||+|+.+..  ..+....++...+..++.+|
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~~--l~~~~------~~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~is   78 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNPM--IEDIL------KNKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSIN   78 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCHH--HHHHC------SSSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECC
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCHH--HHHHH------cCCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceee
Confidence            344678899999999999987654321  11111      257999999999996543  22233444455677899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHc
Q 028381          159 AKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~  178 (210)
                      +.++.+..++...+.+.+.+
T Consensus        79 a~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          79 SVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             TTTCTTGGGHHHHHHHHHHH
T ss_pred             cccCCCccccchhhhhhhhh
Confidence            99999998888877776644

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=4.9e-07  Score=64.40  Aligned_cols=87  Identities=10%  Similarity=0.089  Sum_probs=60.8

Q ss_pred             hcccCccEEEEEEECCCccc-HHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHHHhCCeEEEE
Q 028381           81 SYYRGAQGIIMVYDVTRRDT-FTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT--KKEGINFAREYGCLFIEC  157 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~  157 (210)
                      -...+.|.+++|+++.++.. ...+.. ++....    ..+++.+||.||+||.......  .+.........+.+++.+
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~idR-~Lv~a~----~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~   80 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLDR-FLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT   80 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHH-HHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHHH-HHHHHH----HcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceee
Confidence            34678999999999988653 444443 444433    4678889999999996543221  122334455679999999


Q ss_pred             ccCCCCCHHHHHHHH
Q 028381          158 SAKTRVNVQQCFEEL  172 (210)
Q Consensus       158 Sa~~~~~i~~~~~~l  172 (210)
                      |++++.|++++..++
T Consensus        81 Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          81 SSKDQDSLADIIPHF   95 (231)
T ss_dssp             CHHHHTTCTTTGGGG
T ss_pred             ecCChhHHHHHHHhh
Confidence            999999998876554

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=4.9e-06  Score=59.20  Aligned_cols=72  Identities=13%  Similarity=0.140  Sum_probs=39.0

Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCeEEEEccCCCC
Q 028381           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY--GCLFIECSAKTRV  163 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~  163 (210)
                      .+++|.|+|+............+...+..       .=++|+||+|+....    +..+...+..  .+++++++ .-..
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~-------AD~ivlNK~Dl~~~~----~~~~~~l~~lNP~a~Ii~~~-~g~v  189 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVAGEA----EKLHERLARINARAPVYTVT-HGDI  189 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHHT-------CSEEEEECTTTCSCT----HHHHHHHHHHCSSSCEEECC-SSCC
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHHh-------CCcccccccccccHH----HHHHHHHHHHhCCCeEEEee-CCcc
Confidence            58889999988654322221212222321       226889999986432    2344455544  35677654 2234


Q ss_pred             CHHHHH
Q 028381          164 NVQQCF  169 (210)
Q Consensus       164 ~i~~~~  169 (210)
                      .++.+|
T Consensus       190 ~~~~ll  195 (222)
T d1nija1         190 DLGLLF  195 (222)
T ss_dssp             CGGGGS
T ss_pred             CHHHhh
Confidence            555443

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.18  E-value=8.2e-07  Score=62.65  Aligned_cols=92  Identities=16%  Similarity=0.155  Sum_probs=51.9

Q ss_pred             EEEEEEeCCCccccccc----hhhc---cc-----CccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028381           62 LKLAIWDTAGQERFRTL----TSSY---YR-----GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~----~~~~---~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (210)
                      +.+.|+||+|.......    +..+   +.     ..+-.++|+|++...  +.+.+ .......    .+ +-=+|.||
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~-~~~~~~~----~~-~~~lI~TK  165 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEA----VN-VTGIILTK  165 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHH----SC-CCEEEEEC
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhh-hhhhccc----cC-CceEEEec
Confidence            45889999995443321    1111   11     246788999987543  22222 2222221    11 23588999


Q ss_pred             CCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381          130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus       130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      .|...    ..-.+..+....+.|+..++  +|.++++
T Consensus       166 lDe~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         166 LDGTA----KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GGGCS----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             ccCCC----cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            99642    22245677778899987777  4555544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.17  E-value=3.4e-07  Score=65.21  Aligned_cols=57  Identities=28%  Similarity=0.349  Sum_probs=32.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC---CC----CCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNFEE---LS----PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      ..+|+|++|||||||+|+|.+.....   .+    ....+|.....+..++.    .++||||...+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            45799999999999999999763211   11    11112222223445543    367999976654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=3.1e-06  Score=59.48  Aligned_cols=91  Identities=11%  Similarity=0.150  Sum_probs=52.3

Q ss_pred             EEEEEEeCCCccccccc----hh---hccc-----CccEEEEEEECCCccc-HHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028381           62 LKLAIWDTAGQERFRTL----TS---SYYR-----GAQGIIMVYDVTRRDT-FTNLSDVWAKEIDLYSTNQDCIKLLVGN  128 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~----~~---~~~~-----~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~p~ivv~n  128 (210)
                      +.+.|+||+|.......    +.   ..+.     ..+-.++|.|+..... ...+.    .....    .+ +--++.|
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~----~~~~~----~~-~~~lIlT  162 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAK----LFHEA----VG-LTGITLT  162 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHH----HHHHH----SC-CCEEEEE
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHh----hhhhc----cC-CceEEEe
Confidence            45789999995433221    11   1122     2468889999886532 22222    22221    11 2358899


Q ss_pred             CCCCCCCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381          129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus       129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      |.|....    .-.+..+....+.|+..++  .|.++++
T Consensus       163 KlDe~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         163 KLDGTAK----GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             CCTTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             ecCCCCC----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9996432    2345667778899988777  5555544

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.07  E-value=4.7e-06  Score=58.50  Aligned_cols=86  Identities=15%  Similarity=0.213  Sum_probs=50.2

Q ss_pred             EEEEEEeCCCccccccch----hhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLT----SSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (210)
                      +.+.++||+|........    ..+  ..+.+-+++|.|+.....-......+...+.        +-=+|.||.|....
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~--------~~~~I~TKlDe~~~  164 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG--------VTGLVLTKLDGDAR  164 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC--------CCEEEEECGGGCSS
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC--------CCeeEEeecCcccc
Confidence            468899999965444321    112  2356788999998766433222221222221        12388999995422


Q ss_pred             ceecHHHHHHHHHHhCCeEEEEcc
Q 028381          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa  159 (210)
                          .-.+..+....+.|+..++.
T Consensus       165 ----~G~~l~~~~~~~~Pi~~i~~  184 (207)
T d1ls1a2         165 ----GGAALSARHVTGKPIYFAGV  184 (207)
T ss_dssp             ----CHHHHHHHHHHCCCEEEEC-
T ss_pred             ----chHHHHHHHHHCCCEEEEeC
Confidence                33456777788999777753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.06  E-value=5.2e-06  Score=58.36  Aligned_cols=92  Identities=14%  Similarity=0.133  Sum_probs=53.2

Q ss_pred             EEEEEEeCCCcccccc------chhhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028381           62 LKLAIWDTAGQERFRT------LTSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (210)
                      ..+.++||+|...+..      ....+  .-..+-+++|++++....-..  . .......    .+ +--+|.||.|..
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~--~-~~~~~~~----~~-~~~lI~TKlDet  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYD--L-ASKFNQA----SK-IGTIIITKMDGT  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH--H-HHHHHHH----CT-TEEEEEECTTSC
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHH--H-Hhhhhcc----cC-cceEEEecccCC
Confidence            4688999999654332      11111  123567888999886543221  1 2222221    11 224779999964


Q ss_pred             CCceecHHHHHHHHHHhCCeEEEEccCCCCCHHH
Q 028381          134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (210)
                      .    ..-.+..+....+.|+..++  +|.++++
T Consensus       167 ~----~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         167 A----KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             S----CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             C----cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence            2    34456777788899987777  4555543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.83  E-value=4.3e-06  Score=57.20  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      -+|+|.|++|||||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999974

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.78  E-value=6.1e-06  Score=55.91  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=22.6

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .....+|++.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            34568999999999999999999963

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.73  E-value=6.5e-06  Score=55.62  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ..+|++.|+|||||||+++.|.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La   25 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELA   25 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999999985

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.71  E-value=1e-05  Score=55.98  Aligned_cols=26  Identities=23%  Similarity=0.404  Sum_probs=23.3

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..+.+||+|+|+|||||||+...|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            45778999999999999999999974

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=9.8e-06  Score=54.57  Aligned_cols=21  Identities=33%  Similarity=0.417  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -|+|+|++|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            378999999999999999974

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.64  E-value=1.3e-05  Score=54.74  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      +||+|+|+|||||||+++.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998853

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.63  E-value=1.4e-05  Score=52.91  Aligned_cols=20  Identities=40%  Similarity=0.612  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028381           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~   36 (210)
                      |++.|+||||||||++.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.61  E-value=1.6e-05  Score=54.85  Aligned_cols=24  Identities=17%  Similarity=0.347  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..+||+|+|+|||||||+++.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999999873

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.61  E-value=1.2e-05  Score=55.46  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .+.+|+|.|+|||||||+++.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998863

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=1.7e-05  Score=54.30  Aligned_cols=22  Identities=23%  Similarity=0.641  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.59  E-value=2e-05  Score=54.49  Aligned_cols=26  Identities=15%  Similarity=0.233  Sum_probs=22.0

Q ss_pred             cceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           11 FDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        11 ~~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..++..|+|+|+|||||||++++|..
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34557889999999999999999863

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.57  E-value=1.9e-05  Score=54.09  Aligned_cols=22  Identities=18%  Similarity=0.424  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .+|+|+|+|||||||+++.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.2e-05  Score=53.54  Aligned_cols=21  Identities=14%  Similarity=0.381  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028381           15 FKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~   35 (210)
                      .||+|+|+|||||||+.+.|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999998885

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.51  E-value=2.4e-05  Score=52.68  Aligned_cols=20  Identities=30%  Similarity=0.564  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028381           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~   36 (210)
                      |++.|+|||||||+++.|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999974

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=2.6e-05  Score=53.32  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .++|+|+|+|||||||+++.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999963

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=2.7e-05  Score=51.86  Aligned_cols=21  Identities=24%  Similarity=0.562  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999874

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=3.8e-05  Score=53.02  Aligned_cols=23  Identities=17%  Similarity=0.413  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      +..|+|+|+|||||||.++.|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998863

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=7.5e-05  Score=54.61  Aligned_cols=61  Identities=20%  Similarity=0.095  Sum_probs=40.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC--CCC----CCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSDNF--EEL----SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      ...=|.|+|+.++|||+|+|.|++..+  ...    ..|.|...+...+ ..+....+.++||.|...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence            456788999999999999999997653  211    1255544433332 244556788999999543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.43  E-value=3.7e-05  Score=51.71  Aligned_cols=20  Identities=20%  Similarity=0.426  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028381           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~   36 (210)
                      +.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999863

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=2.1e-05  Score=53.83  Aligned_cols=21  Identities=24%  Similarity=0.619  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |+|+||+|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999999843

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.35  E-value=4.1e-05  Score=51.49  Aligned_cols=20  Identities=30%  Similarity=0.507  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      ||+++|++||||||+.+.|.
T Consensus         3 ~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            68999999999999998885

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=5.4e-05  Score=52.71  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .=|+++|.|||||||++++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999873

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=5.2e-05  Score=51.43  Aligned_cols=20  Identities=30%  Similarity=0.665  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      .|+|.|++|+|||||+..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48999999999999999886

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.32  E-value=5.3e-05  Score=50.79  Aligned_cols=20  Identities=35%  Similarity=0.586  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      +|+++|++||||||+.+.|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999998885

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=8.6e-05  Score=50.34  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=21.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ....=|+++|.|||||||+++++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4456788999999999999999864

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.29  E-value=8.2e-05  Score=50.20  Aligned_cols=24  Identities=17%  Similarity=0.331  Sum_probs=20.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ...+-|.++|.|||||||+.+.|.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345778999999999999998886

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.26  E-value=7.1e-05  Score=50.86  Aligned_cols=19  Identities=21%  Similarity=0.310  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028381           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~   35 (210)
                      |+|.|++||||||+++.|.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7788999999999999885

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=7.8e-05  Score=51.17  Aligned_cols=21  Identities=38%  Similarity=0.684  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |+|+||+|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999743

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=7.5e-05  Score=50.14  Aligned_cols=20  Identities=30%  Similarity=0.516  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028381           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~   36 (210)
                      +++.|++||||||+.+.|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999999864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.22  E-value=9.2e-05  Score=49.85  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999998743

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=9e-05  Score=53.00  Aligned_cols=24  Identities=29%  Similarity=0.271  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      =+++|+|++|||||||++.+.+-.
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            368999999999999999998653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.00012  Score=50.51  Aligned_cols=23  Identities=17%  Similarity=0.411  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .--|+|+|+|||||||++..|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34588999999999999999974

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.19  E-value=9.1e-05  Score=51.09  Aligned_cols=22  Identities=18%  Similarity=0.363  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      --|+|+|+|||||||++++|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999964

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.19  E-value=9.6e-05  Score=51.38  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|+.|||||||++.+++-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999998654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.18  E-value=9.8e-05  Score=50.40  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |+++||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999999744

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.16  E-value=0.0001  Score=53.36  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..+.-|++.|+||+|||||++.+...
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34456999999999999999999754

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.14  E-value=0.00011  Score=49.33  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            556699999999999998743

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.13  E-value=0.00013  Score=52.25  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      =.++|+|++|||||||++-+.+-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999998643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00012  Score=51.86  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999987653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.12  E-value=0.00012  Score=52.66  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++|+|++|||||||++.+.+-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            68999999999999999998643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00013  Score=50.25  Aligned_cols=20  Identities=40%  Similarity=0.649  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028381           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~   36 (210)
                      |+|+||+|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999863

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.11  E-value=0.00013  Score=49.22  Aligned_cols=19  Identities=21%  Similarity=0.546  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028381           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~   35 (210)
                      |+++|++||||||+.+.|.
T Consensus         5 Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7889999999999999885

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.10  E-value=0.00016  Score=49.58  Aligned_cols=24  Identities=25%  Similarity=0.158  Sum_probs=21.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ..++=|+|-|++|||||||++.|.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            346679999999999999999986

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=6.6e-05  Score=51.54  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..-|++.|+|||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999863

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.09  E-value=0.00013  Score=51.66  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47899999999999999887653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00014  Score=52.25  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++|+|++|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            68999999999999999998653

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.09  E-value=0.00014  Score=51.74  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~   38 (210)
                      ++++|++|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999999999764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.06  E-value=0.00015  Score=51.56  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999998764

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00016  Score=52.98  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++|+|++|||||||++.+.+..
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.00014  Score=51.73  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..-.+++.||||+||||+++.+...
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00016  Score=50.40  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |+|+||+|||||||+++|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999999754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00018  Score=49.52  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      -+++++|+||+|||++++.|..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHH
Confidence            4789999999999999988764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.03  E-value=0.00016  Score=51.39  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -.++|.||||+||||+++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            46899999999999999998754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.00  E-value=0.00013  Score=51.54  Aligned_cols=24  Identities=21%  Similarity=0.420  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      -++++|++|||||||++.+.+-..
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            378999999999999999997643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00019  Score=51.13  Aligned_cols=23  Identities=35%  Similarity=0.405  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            47899999999999999998754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.97  E-value=0.0002  Score=50.97  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999998764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.96  E-value=0.0002  Score=51.13  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999999764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.91  E-value=0.00016  Score=52.04  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      =+++|+|++|||||||++.+.+-
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhc
Confidence            37899999999999999988754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00026  Score=51.34  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .-+++++|+||+|||++++.|..
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHH
Confidence            34789999999999999988764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.90  E-value=0.00024  Score=48.28  Aligned_cols=20  Identities=40%  Similarity=0.690  Sum_probs=16.9

Q ss_pred             EE-EEEcCCCCcHHHHHHHHh
Q 028381           16 KL-LMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki-~i~G~~~~GKstli~~l~   35 (210)
                      || +|.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            45 457999999999998885

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.89  E-value=0.00025  Score=49.74  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      .++|+|-|||||||||+.+.|.
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La   24 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIA   24 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4678899999999999999986

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.00034  Score=49.84  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      -++++|+.|+|||||++.+.+-..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999999997643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00017  Score=51.27  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -++++|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999999874

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00034  Score=48.77  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ++-|+|.|++|||||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            5779999999999999999885

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.84  E-value=0.00027  Score=52.42  Aligned_cols=24  Identities=33%  Similarity=0.516  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.|+++||||||||.|++.+...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            356899999999999999998753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.83  E-value=0.00038  Score=49.87  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ....|++.||||+|||++++.+...
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            3467999999999999999999753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.80  E-value=0.00033  Score=50.49  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999998653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.77  E-value=0.00039  Score=49.11  Aligned_cols=21  Identities=38%  Similarity=0.692  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .+++.||+|+||||+++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.77  E-value=0.0002  Score=51.09  Aligned_cols=24  Identities=21%  Similarity=0.477  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      .++++|++|||||||++.+.+-..
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcC
Confidence            578999999999999999997543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.76  E-value=0.00047  Score=49.58  Aligned_cols=22  Identities=41%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~~   38 (210)
                      ++++|+.|||||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999999764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00039  Score=49.71  Aligned_cols=24  Identities=17%  Similarity=0.391  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.+++.||||+||||+++.+...
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999854

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.70  E-value=0.00047  Score=49.48  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..-.++|.|+||+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988743

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.68  E-value=0.0005  Score=51.27  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .+|+|.|++|||||||++.|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999854

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0005  Score=47.96  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      =|+|.|||||||+|+...|.
T Consensus         5 iI~I~GppGSGKgT~ak~La   24 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMA   24 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            36777999999999999886

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.59  E-value=0.00055  Score=49.03  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -.|++.||||+|||++++.+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35999999999999999999853

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.59  E-value=0.00052  Score=49.57  Aligned_cols=21  Identities=29%  Similarity=0.314  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -+++.|+||+|||++++.+..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            345569999999999999874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.59  E-value=0.00085  Score=45.80  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .++-|+|.|.+||||||+++.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4677899999999999999988643

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.54  E-value=0.0014  Score=43.33  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..-|++-|+-|+|||||++.+...
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHhh
Confidence            345888899999999999998744

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.00065  Score=47.91  Aligned_cols=21  Identities=38%  Similarity=0.729  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .++|.||+|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            489999999999999998874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.00049  Score=49.09  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -.+++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999888643

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.50  E-value=0.00059  Score=53.10  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      .-+|+++||+|||||-|+++|.
T Consensus        49 ksNILliGPTGvGKTlLAr~LA   70 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLA   70 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHH
Confidence            3489999999999999999985

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.50  E-value=0.00069  Score=47.16  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ....-|.|.|.||||||||.+.|.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            455679999999999999999986

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.49  E-value=0.00066  Score=48.76  Aligned_cols=21  Identities=29%  Similarity=0.278  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477889999999999998863

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.48  E-value=0.00073  Score=46.29  Aligned_cols=27  Identities=33%  Similarity=0.498  Sum_probs=23.0

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ...+++-|+|-|..||||||+++.|..
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            345667899999999999999999874

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.00076  Score=47.31  Aligned_cols=21  Identities=19%  Similarity=0.536  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      .+++.||+|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            589999999999999988753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00082  Score=48.34  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .-.+++.||||+|||++++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34599999999999999999974

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.00085  Score=48.32  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-.|++.||||+|||++++.+...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            456999999999999999999864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.0009  Score=46.96  Aligned_cols=22  Identities=32%  Similarity=0.688  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .+++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999998753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0012  Score=48.67  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=22.1

Q ss_pred             ccceeeEEEEEcCCCCcHHHHHHHHh
Q 028381           10 EFDYLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        10 ~~~~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ....++=|+|.|++|||||||.+.|.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            34567899999999999999988875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.21  E-value=0.00084  Score=51.24  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=18.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      .-+++++|+||||||++++.|.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHH
Confidence            3467999999999999986554

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.0012  Score=47.80  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..-.|++.|++|+|||+|++.+.+.
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHH
Confidence            3456999999999999999999754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.97  E-value=0.0019  Score=44.46  Aligned_cols=20  Identities=25%  Similarity=0.466  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      -|+|-|..||||||+++.|.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47889999999999998876

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0026  Score=46.27  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=22.3

Q ss_pred             ccccceeeEEEEEcCCCCcHHHHHHHH
Q 028381            8 QQEFDYLFKLLMIGDSGVGKSSLLLSF   34 (210)
Q Consensus         8 ~~~~~~~~ki~i~G~~~~GKstli~~l   34 (210)
                      +.....++=|+|-|++|||||||...+
T Consensus        21 ~~~~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          21 ETGNKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             TTTCCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             hcCCCCCEEEEeECCCCCCHHHHHHHH
Confidence            344566889999999999999998765

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.92  E-value=0.0019  Score=48.81  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      -.+++.||||+|||+|++.+.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999863

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.84  E-value=0.012  Score=42.15  Aligned_cols=88  Identities=19%  Similarity=0.149  Sum_probs=49.4

Q ss_pred             EEEEEEeCCCcccccc-chhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCCCCceec
Q 028381           62 LKLAIWDTAGQERFRT-LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVDKESERVVT  139 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~  139 (210)
                      +.+.++|+|+.-.... ........+|.++++... +..++..... ....+.......+..+ -+|.|+.+....    
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~-~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANN-ISKGIQKYAKSGGVRLGGIICNSRKVANE----  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHH-HHHHHHHHBTTBBCEEEEEEEECCSSSCC----
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHH-HHHHHHhhccccceeccceEEeeecCCCc----
Confidence            4578889986433222 122223457888877766 4455655555 5555555444444443 377899886543    


Q ss_pred             HHHHHHHHHHhCCeEE
Q 028381          140 KKEGINFAREYGCLFI  155 (210)
Q Consensus       140 ~~~~~~~~~~~~~~~~  155 (210)
                      .+..+.+....+.+++
T Consensus       190 ~~~~~~~~~~~~~~~~  205 (269)
T d1cp2a_         190 YELLDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHHHHTCCEE
T ss_pred             cchhhhhHhhcCCeEE
Confidence            2345555666666543

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.82  E-value=0.0021  Score=48.55  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ..-+++++||+|||||-|+++|.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHH
Confidence            45679999999999999999985

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.81  E-value=0.001  Score=49.66  Aligned_cols=20  Identities=35%  Similarity=0.677  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      .|++.|+||+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            69999999999999999885

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0029  Score=43.70  Aligned_cols=19  Identities=21%  Similarity=0.342  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028381           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~   35 (210)
                      |+|-|..||||||+++.|.
T Consensus         5 IviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6777999999999998876

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.64  E-value=0.003  Score=45.84  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      .-|+|.|++|+|||||+..+++.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999998754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0033  Score=43.18  Aligned_cols=22  Identities=18%  Similarity=0.283  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      =+.|.|+||+|||+|+..+..+
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3678899999999999888754

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.004  Score=43.03  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      +-|+|.|..||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            45889999999999999988643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.0036  Score=46.28  Aligned_cols=21  Identities=29%  Similarity=0.581  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 028381           15 FKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~   35 (210)
                      -.++++||+|+|||.|++.|.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHH
Confidence            368999999999999999886

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.53  E-value=0.0047  Score=41.51  Aligned_cols=25  Identities=40%  Similarity=0.643  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      .-|+|.|++|+||||++-.|....+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999999886543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.51  E-value=0.0039  Score=46.11  Aligned_cols=21  Identities=19%  Similarity=0.477  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      +++.|+||+|||.|++.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445699999999999998743

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.47  E-value=0.004  Score=43.68  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -++|.|+||+|||+|+..+...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4678899999999999988744

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.47  E-value=0.0065  Score=41.81  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      +-|+|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5588999999999999998863

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0041  Score=43.09  Aligned_cols=19  Identities=21%  Similarity=0.312  Sum_probs=16.1

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028381           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~   35 (210)
                      |+|-|..||||||+++.|.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6677999999999887764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.40  E-value=0.0055  Score=41.18  Aligned_cols=25  Identities=36%  Similarity=0.610  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      .-|+|.|++|+||||+.-.|....+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999885443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.00084  Score=45.87  Aligned_cols=18  Identities=33%  Similarity=0.665  Sum_probs=15.7

Q ss_pred             EEEcCCCCcHHHHHHHHh
Q 028381           18 LMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        18 ~i~G~~~~GKstli~~l~   35 (210)
                      +|+|+.|||||||+..+.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            456999999999999884

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0034  Score=44.12  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~   36 (210)
                      -.|+|-|+.||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998864

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.28  E-value=0.0048  Score=43.56  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      =++|.|+||+|||+|.-.+..+
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4688999999999999888644

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.11  E-value=0.0057  Score=42.48  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      +.+.|++|+|||.|++.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.05  E-value=0.0076  Score=40.17  Aligned_cols=25  Identities=36%  Similarity=0.604  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~~~   39 (210)
                      .-|+|.|++|+||||+.-.|....+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999988876543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.04  E-value=0.0064  Score=42.70  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      --++|.|+||+|||+|+..+..+
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            34788899999999999888754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.93  E-value=0.0038  Score=45.62  Aligned_cols=18  Identities=28%  Similarity=0.621  Sum_probs=15.8

Q ss_pred             EEEcCCCCcHHHHHHHHh
Q 028381           18 LMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        18 ~i~G~~~~GKstli~~l~   35 (210)
                      +++|+.||||||++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            567999999999998873

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.0082  Score=41.42  Aligned_cols=21  Identities=24%  Similarity=0.528  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999987653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.88  E-value=0.0055  Score=41.94  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .-.+++.||+++|||+|+..+..
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            35688999999999999988763

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.0078  Score=42.44  Aligned_cols=20  Identities=35%  Similarity=0.554  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      .+++.|++|+||||+++.+.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            37889999999999998875

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.84  E-value=0.0029  Score=46.02  Aligned_cols=19  Identities=32%  Similarity=0.604  Sum_probs=14.4

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028381           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~   35 (210)
                      |+|.|.+||||||+.+.|.
T Consensus         7 IgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEESCC---CCTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            8999999999999998763

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.76  E-value=0.012  Score=43.70  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=22.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            5789999999999999999998753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.70  E-value=0.0085  Score=45.76  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      |+|.|+.||||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999998854

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.69  E-value=0.0088  Score=41.85  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      =++|.|+||+|||+|+..+..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            367889999999999988864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0097  Score=41.84  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      =++|.|+||+|||+|...+..+
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999988753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0096  Score=41.77  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -|+|=|.-||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            578889999999999999873

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.49  E-value=0.0091  Score=45.37  Aligned_cols=21  Identities=33%  Similarity=0.619  Sum_probs=17.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~   35 (210)
                      .+++ |+|+.|+|||+++.++.
T Consensus        26 ~l~~-i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFTS-IIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEEE-EECSTTSSHHHHHHHHH
T ss_pred             CEEE-EECCCCCCHHHHHHHHH
Confidence            3544 67999999999999874

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.22  E-value=0.013  Score=40.62  Aligned_cols=20  Identities=35%  Similarity=0.597  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      -+.|.|+||+|||+|+..+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46788999999999987664

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.013  Score=40.56  Aligned_cols=19  Identities=21%  Similarity=0.242  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028381           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~   35 (210)
                      |+|=|..||||||+++.|.
T Consensus         6 I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7788999999999998876

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.14  E-value=0.0089  Score=43.39  Aligned_cols=18  Identities=22%  Similarity=0.444  Sum_probs=14.2

Q ss_pred             EEEEcCCCCcHHHH-HHHH
Q 028381           17 LLMIGDSGVGKSSL-LLSF   34 (210)
Q Consensus        17 i~i~G~~~~GKstl-i~~l   34 (210)
                      ++|+|+||+||||. ++++
T Consensus        17 ~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHH
Confidence            68899999999965 4443

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.14  E-value=0.014  Score=40.91  Aligned_cols=21  Identities=19%  Similarity=0.170  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999854

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.06  E-value=0.012  Score=43.60  Aligned_cols=25  Identities=20%  Similarity=0.429  Sum_probs=22.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      ..++|.|=|.-||||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            5689999999999999999999754

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.96  E-value=0.012  Score=42.99  Aligned_cols=16  Identities=38%  Similarity=0.762  Sum_probs=13.4

Q ss_pred             EEEEEcCCCCcHHHHH
Q 028381           16 KLLMIGDSGVGKSSLL   31 (210)
Q Consensus        16 ki~i~G~~~~GKstli   31 (210)
                      .++|.|++||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3789999999999654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.88  E-value=0.019  Score=42.44  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..++|.|=|.-||||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999999973

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.72  E-value=0.019  Score=41.14  Aligned_cols=20  Identities=25%  Similarity=0.479  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028381           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~   36 (210)
                      ++|.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57889999999999877763

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.59  E-value=0.021  Score=41.96  Aligned_cols=20  Identities=35%  Similarity=0.737  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      .++++||+|+|||.+++.|.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHH
Confidence            57888999999999998775

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.27  E-value=0.021  Score=43.64  Aligned_cols=23  Identities=39%  Similarity=0.494  Sum_probs=19.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .-.++|+|.+|+|||++++.+..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            34699999999999999877753

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.16  E-value=0.027  Score=40.38  Aligned_cols=25  Identities=12%  Similarity=0.243  Sum_probs=20.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ...--+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            3455678889999999999998874

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.026  Score=40.23  Aligned_cols=19  Identities=32%  Similarity=0.480  Sum_probs=16.2

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028381           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~   35 (210)
                      .+|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5688999999999987764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.03  Score=40.53  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      -=|++|+|++|+|||+|+..+..+
T Consensus        43 GQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          43 GQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             TCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCeeeEeCCCCCCHHHHHHHHHHH
Confidence            348999999999999999888753

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.028  Score=42.08  Aligned_cols=19  Identities=21%  Similarity=0.461  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 028381           16 KLLMIGDSGVGKSSLLLSF   34 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l   34 (210)
                      -.+|.|+||+||||++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            3677899999999987543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.93  E-value=0.036  Score=34.42  Aligned_cols=24  Identities=13%  Similarity=0.217  Sum_probs=21.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHh
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~   35 (210)
                      ..-|.|++.|..|+||+||.+.|.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHH
Confidence            345889999999999999999986

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.97  E-value=0.046  Score=38.58  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 028381           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      ..-|+|.|++|+||+.+++.+..
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            34589999999999999998864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.97  E-value=0.07  Score=38.01  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      =+.|.|++++|||+|+-.+...
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            3568899999999998777643

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.95  E-value=0.074  Score=38.10  Aligned_cols=22  Identities=32%  Similarity=0.724  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028381           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~~   37 (210)
                      |++++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999998888644

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.45  E-value=0.084  Score=36.90  Aligned_cols=19  Identities=26%  Similarity=0.377  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028381           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~   35 (210)
                      ++|.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6788999999999999874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.15  E-value=0.091  Score=36.45  Aligned_cols=19  Identities=32%  Similarity=0.474  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028381           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~   35 (210)
                      +++.|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999999874

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.01  E-value=0.084  Score=38.40  Aligned_cols=14  Identities=43%  Similarity=0.726  Sum_probs=12.8

Q ss_pred             EEEcCCCCcHHHHH
Q 028381           18 LMIGDSGVGKSSLL   31 (210)
Q Consensus        18 ~i~G~~~~GKstli   31 (210)
                      +|+|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999975

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.00  E-value=0.12  Score=34.99  Aligned_cols=25  Identities=12%  Similarity=0.096  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028381           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~ki~i~G~~~~GKstli~~l~~   36 (210)
                      .....+++-|++|+|||+++..+..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988764

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.99  E-value=0.14  Score=34.08  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028381           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~i~G~~~~GKstli~~l~~~   37 (210)
                      ++|+|...||||.++..+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998743

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.58  E-value=0.092  Score=38.32  Aligned_cols=15  Identities=40%  Similarity=0.651  Sum_probs=13.2

Q ss_pred             EEEEcCCCCcHHHHH
Q 028381           17 LLMIGDSGVGKSSLL   31 (210)
Q Consensus        17 i~i~G~~~~GKstli   31 (210)
                      -+|+|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            388899999999975

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.03  E-value=0.11  Score=37.97  Aligned_cols=14  Identities=43%  Similarity=0.726  Sum_probs=12.9

Q ss_pred             EEEcCCCCcHHHHH
Q 028381           18 LMIGDSGVGKSSLL   31 (210)
Q Consensus        18 ~i~G~~~~GKstli   31 (210)
                      +|+|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999987

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.67  E-value=0.15  Score=36.60  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      =|++++|++|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHh
Confidence            37899999999999998766543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.47  E-value=0.14  Score=32.08  Aligned_cols=20  Identities=20%  Similarity=0.177  Sum_probs=15.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      ..++.++.|+|||+++-.+.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            35678999999998886554

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=86.18  E-value=0.23  Score=35.37  Aligned_cols=21  Identities=24%  Similarity=0.344  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028381           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~~   36 (210)
                      =+.|.|++++|||+|+..+..
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            356789999999999987764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.72  E-value=0.25  Score=35.15  Aligned_cols=20  Identities=20%  Similarity=0.343  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028381           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l~   35 (210)
                      =+.|.|++++|||+|+-.+.
T Consensus        62 i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHH
Confidence            35688999999999987766

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.37  E-value=0.2  Score=35.77  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 028381           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~ki~i~G~~~~GKstli~~l~~~   37 (210)
                      =|++|+|++|+|||+|+..+...
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ceEeeccCCCCChHHHHHHHHhh
Confidence            37899999999999998765544

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.81  E-value=0.28  Score=34.86  Aligned_cols=19  Identities=37%  Similarity=0.597  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 028381           16 KLLMIGDSGVGKSSLLLSF   34 (210)
Q Consensus        16 ki~i~G~~~~GKstli~~l   34 (210)
                      -|++.|-.|+||||+.-.+
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            3467899999999976554

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=84.67  E-value=0.31  Score=32.78  Aligned_cols=19  Identities=21%  Similarity=0.422  Sum_probs=16.1

Q ss_pred             EEEEEcCC-CCcHHHHHHHH
Q 028381           16 KLLMIGDS-GVGKSSLLLSF   34 (210)
Q Consensus        16 ki~i~G~~-~~GKstli~~l   34 (210)
                      |+.|.|-. ||||||+.-.|
T Consensus         3 ~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHH
Confidence            78899995 99999987655

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.08  E-value=2.7  Score=28.15  Aligned_cols=65  Identities=11%  Similarity=0.088  Sum_probs=42.1

Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCC
Q 028381           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKES  134 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~  134 (210)
                      +.+.++|+++...  ......+..+|.++++...+ ..++..... +...+.    ..+.|++ +|.|+.+...
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~-~~~~~~----~~~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMK-VGIVLK----KAGLAILGFVLNRYGRSD  177 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHH-HHHHHH----HTTCEEEEEEEEEETSCT
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhH-HHHHHh----hhhhhhhhhhhccccccc
Confidence            5688999987543  33445577899999999865 344444444 333333    2456665 7889998643

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=83.93  E-value=0.34  Score=30.71  Aligned_cols=18  Identities=22%  Similarity=0.405  Sum_probs=14.1

Q ss_pred             EEEcCCCCcHHH-HHHHHh
Q 028381           18 LMIGDSGVGKSS-LLLSFT   35 (210)
Q Consensus        18 ~i~G~~~~GKst-li~~l~   35 (210)
                      +++||=.||||| |++++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            467999999999 666653

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.49  E-value=0.37  Score=34.28  Aligned_cols=116  Identities=18%  Similarity=0.217  Sum_probs=59.4

Q ss_pred             EEEEEEeCCCccccccchhh-cccCccEEEEEEECCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCCCCceec
Q 028381           62 LKLAIWDTAGQERFRTLTSS-YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVDKESERVVT  139 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~  139 (210)
                      +.+.++|+|+.......... ....++.++++.. .+..++..+.. +...+.......+.++ .+|.|+.+....    
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~-~~~~i~~~~~~~~~~~~gvv~n~~~~~~~----  192 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANN-ISKGIVKYANSGSVRLGGLICNSRNTDRE----  192 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHH-HHHHHHHHHTTSCCEEEEEEEECCCCTTH----
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHH-HHHHHHhhhhcccccccceeehhhcchhh----
Confidence            45678898875432222111 1234566666544 34445555544 4444444334445554 377898875322    


Q ss_pred             HHHHHHHHHHhCCeEEEE---c------cC---------CCCCHHHHHHHHHHHHHcCCCcc
Q 028381          140 KKEGINFAREYGCLFIEC---S------AK---------TRVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~---S------a~---------~~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      .+....+....+.+++.+   +      ..         -+.....-|..|.+.++++....
T Consensus       193 ~~~~~~~~~~~g~~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~~~~  254 (289)
T d2afhe1         193 DELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKLLV  254 (289)
T ss_dssp             HHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCCCB
T ss_pred             HHHHHHHHHHcCCeEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCCCCC
Confidence            223444555566654332   1      11         12234455777888887776554

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.91  E-value=0.38  Score=33.92  Aligned_cols=20  Identities=35%  Similarity=0.758  Sum_probs=14.6

Q ss_pred             eEEEEE-cCCCCcHHHHHHHH
Q 028381           15 FKLLMI-GDSGVGKSSLLLSF   34 (210)
Q Consensus        15 ~ki~i~-G~~~~GKstli~~l   34 (210)
                      .+|+++ |-.|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            455555 99999999985444

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=81.39  E-value=0.46  Score=31.56  Aligned_cols=15  Identities=27%  Similarity=0.572  Sum_probs=12.9

Q ss_pred             EEEEEcCCCCcHHHH
Q 028381           16 KLLMIGDSGVGKSSL   30 (210)
Q Consensus        16 ki~i~G~~~~GKstl   30 (210)
                      ++++.+|.|+|||.+
T Consensus        25 n~lv~~pTGsGKT~i   39 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLI   39 (200)
T ss_dssp             CEEEECCTTSCHHHH
T ss_pred             CeEEEeCCCCcHHHH
Confidence            478899999999964