BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028382
         (210 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808 OS=Arabidopsis thaliana
           GN=At3g50808 PE=4 SV=1
          Length = 110

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 31/131 (23%)

Query: 83  MDISGVQTYVINSARVVFLNER---PQPRSGKGVAHICEICGRSL--LDPFRFCSLGCKL 137
           MDISG+  Y IN   +V++N+R      RS   V H C+IC   +       FCS+ CK 
Sbjct: 5   MDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSMECKF 64

Query: 138 AGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSSAR 197
             +         L  + +  ME    ++         E+ E    +I  P   K      
Sbjct: 65  RSV---------LGSQLDELMENSSEVT---------EISE----EIDEPVMKK----RH 98

Query: 198 RRKGVPHRAPF 208
           RRKG PHRAPF
Sbjct: 99  RRKGSPHRAPF 109


>sp|O94374|IMA2_SCHPO Importin subunit alpha-2 OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=imp1 PE=1 SV=1
          Length = 539

 Score = 31.6 bits (70), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 10/42 (23%), Positives = 23/42 (54%)

Query: 52  CRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVI 93
           C      D+++IQ+   +  ++++VGE+   MD+  +  Y +
Sbjct: 425 CDMLNGSDNKIIQVALDAIENILKVGEMDRTMDLENINQYAV 466


>sp|O14063|IMA1_SCHPO Importin subunit alpha-1 OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=cut15 PE=1 SV=1
          Length = 542

 Score = 31.6 bits (70), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 5   EASLVPPWLEPMLRTAFFTVCR---------THGDAARSECNMYCLDCNDQAFCFYCRSS 55
           EA+++PP +  +L TA F + +         T G A R +   Y ++    A    C   
Sbjct: 372 EANIIPPLIH-LLTTADFKIQKEACWAISNATSGGARRPDQIRYLVE--QGAIKPLCNLL 428

Query: 56  KHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVI 93
             +D+++IQ+      +++RVGE+    +   +  Y +
Sbjct: 429 ACQDNKIIQVALDGIENILRVGELDRANNPDKINLYAV 466


>sp|Q03096|EST3_YEAST Telomere replication protein EST3 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=EST3 PE=1 SV=2
          Length = 181

 Score = 30.8 bits (68), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 176 LREDSQHDIYPPTTHKPPSSARRRKGVPHRAP 207
           + ++S+HD Y P+ H  PS  ++   +PH +P
Sbjct: 26  IEDNSEHDQYHPSGHVIPSLTKQDLALPHMSP 57


>sp|Q2SQL8|THIC_HAHCH Phosphomethylpyrimidine synthase OS=Hahella chejuensis (strain KCTC
           2396) GN=thiC PE=3 SV=1
          Length = 638

 Score = 30.4 bits (67), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 14/72 (19%)

Query: 107 PRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISR 166
           P+ G  +AH C +CG       +FCS+  K+    RD +A      K EA   + EG S+
Sbjct: 568 PKEGHKLAHFCSMCGP------KFCSM--KITQDVRDYSA------KLEAEKAQAEGASQ 613

Query: 167 QVSSRKQEELRE 178
           Q + +  +E+ +
Sbjct: 614 QEAEQGMQEMSQ 625


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,486,500
Number of Sequences: 539616
Number of extensions: 3014415
Number of successful extensions: 8511
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 8505
Number of HSP's gapped (non-prelim): 23
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)