Query 028383
Match_columns 210
No_of_seqs 337 out of 2036
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 10:39:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 3E-24 6.4E-29 161.5 14.7 131 73-206 16-157 (160)
2 KOG0027 Calmodulin and related 99.9 1.8E-22 4E-27 152.8 14.3 129 75-206 6-150 (151)
3 KOG0031 Myosin regulatory ligh 99.8 1.3E-19 2.8E-24 133.1 13.7 130 73-205 28-165 (171)
4 KOG0030 Myosin essential light 99.8 6.7E-19 1.4E-23 127.3 12.5 126 76-205 10-151 (152)
5 KOG0028 Ca2+-binding protein ( 99.8 2.6E-18 5.6E-23 127.1 12.6 126 77-205 33-170 (172)
6 PTZ00183 centrin; Provisional 99.8 2E-17 4.3E-22 125.3 14.7 128 75-205 15-154 (158)
7 PTZ00184 calmodulin; Provision 99.8 2.7E-17 5.9E-22 123.0 14.4 127 76-205 10-148 (149)
8 KOG0037 Ca2+-binding protein, 99.6 6.9E-15 1.5E-19 114.4 13.1 123 76-205 56-188 (221)
9 KOG0034 Ca2+/calmodulin-depend 99.6 7.7E-15 1.7E-19 114.0 11.4 128 74-206 30-176 (187)
10 KOG0036 Predicted mitochondria 99.5 3.8E-13 8.3E-18 113.3 12.6 121 79-205 16-146 (463)
11 cd05022 S-100A13 S-100A13: S-1 99.5 2.6E-13 5.6E-18 93.3 7.3 67 138-206 7-76 (89)
12 PF13499 EF-hand_7: EF-hand do 99.4 4.7E-13 1E-17 86.9 7.7 64 140-203 1-66 (66)
13 KOG0044 Ca2+ sensor (EF-Hand s 99.4 1.4E-12 2.9E-17 101.6 11.3 125 81-205 30-175 (193)
14 cd05027 S-100B S-100B: S-100B 99.4 4.1E-12 9E-17 87.3 8.2 66 139-206 8-80 (88)
15 PLN02964 phosphatidylserine de 99.3 1E-11 2.3E-16 112.2 12.5 105 72-205 138-243 (644)
16 KOG0377 Protein serine/threoni 99.3 1.1E-10 2.4E-15 99.3 14.5 157 36-204 434-614 (631)
17 cd05026 S-100Z S-100Z: S-100Z 99.2 4.4E-11 9.6E-16 83.1 8.2 68 139-206 10-82 (93)
18 cd05031 S-100A10_like S-100A10 99.2 4.1E-11 8.9E-16 83.4 8.0 66 138-205 7-79 (94)
19 cd05025 S-100A1 S-100A1: S-100 99.2 5.2E-11 1.1E-15 82.6 8.4 69 138-206 8-81 (92)
20 cd05029 S-100A6 S-100A6: S-100 99.2 4.6E-11 1E-15 82.1 8.0 66 139-206 10-80 (88)
21 cd00052 EH Eps15 homology doma 99.2 7.1E-11 1.5E-15 76.5 7.3 60 142-205 2-61 (67)
22 smart00027 EH Eps15 homology d 99.2 1.4E-10 3.1E-15 81.0 8.1 64 138-205 9-72 (96)
23 KOG0027 Calmodulin and related 99.2 1.7E-10 3.7E-15 87.2 8.9 69 138-208 7-75 (151)
24 cd05023 S-100A11 S-100A11: S-1 99.1 3.4E-10 7.4E-15 77.9 8.1 69 138-206 8-81 (89)
25 cd00213 S-100 S-100: S-100 dom 99.1 3E-10 6.6E-15 78.0 7.7 70 138-207 7-81 (88)
26 PF13499 EF-hand_7: EF-hand do 99.1 3.4E-10 7.3E-15 73.3 6.9 65 79-165 2-66 (66)
27 PF13833 EF-hand_8: EF-hand do 99.1 5.3E-10 1.1E-14 69.6 6.9 53 152-205 1-53 (54)
28 cd00051 EFh EF-hand, calcium b 99.1 1.2E-09 2.5E-14 68.6 7.8 61 141-203 2-62 (63)
29 cd00252 SPARC_EC SPARC_EC; ext 99.0 1.3E-09 2.8E-14 78.5 7.6 61 138-204 47-107 (116)
30 COG5126 FRQ1 Ca2+-binding prot 99.0 2.5E-09 5.5E-14 80.8 8.1 66 139-207 20-85 (160)
31 KOG0044 Ca2+ sensor (EF-Hand s 99.0 7.8E-09 1.7E-13 80.6 10.8 108 92-207 20-130 (193)
32 PF14658 EF-hand_9: EF-hand do 99.0 3.6E-09 7.9E-14 67.8 6.9 63 143-206 2-65 (66)
33 cd05022 S-100A13 S-100A13: S-1 98.9 4.7E-09 1E-13 72.1 7.9 70 74-168 5-76 (89)
34 KOG0038 Ca2+-binding kinase in 98.9 4.6E-09 1E-13 77.1 8.1 69 136-205 105-177 (189)
35 KOG0037 Ca2+-binding protein, 98.9 2.1E-08 4.5E-13 78.5 11.1 99 72-204 119-219 (221)
36 KOG4223 Reticulocalbin, calume 98.9 4E-09 8.6E-14 86.9 6.6 119 80-201 166-301 (325)
37 cd05030 calgranulins Calgranul 98.9 8.6E-09 1.9E-13 70.8 7.1 67 139-207 8-81 (88)
38 cd05027 S-100B S-100B: S-100B 98.9 2.2E-08 4.8E-13 68.8 8.7 70 74-168 5-80 (88)
39 cd00052 EH Eps15 homology doma 98.8 1.6E-08 3.5E-13 65.3 7.1 62 79-168 1-62 (67)
40 PTZ00183 centrin; Provisional 98.8 2.2E-08 4.7E-13 75.5 8.9 106 95-205 11-118 (158)
41 PTZ00184 calmodulin; Provision 98.8 2.3E-08 5E-13 74.4 8.7 106 95-205 5-112 (149)
42 KOG0028 Ca2+-binding protein ( 98.8 1.6E-08 3.5E-13 75.4 7.6 65 139-205 33-97 (172)
43 KOG4223 Reticulocalbin, calume 98.8 1.1E-08 2.4E-13 84.3 7.3 127 79-207 79-230 (325)
44 cd05026 S-100Z S-100Z: S-100Z 98.8 3.8E-08 8.2E-13 68.3 8.9 76 73-169 6-83 (93)
45 cd05031 S-100A10_like S-100A10 98.8 3.1E-08 6.7E-13 68.8 8.1 68 76-169 7-81 (94)
46 smart00027 EH Eps15 homology d 98.8 7.2E-08 1.6E-12 67.2 8.5 67 74-168 7-73 (96)
47 cd05025 S-100A1 S-100A1: S-100 98.7 1E-07 2.2E-12 66.0 8.8 74 74-168 6-81 (92)
48 cd00213 S-100 S-100: S-100 dom 98.7 1.1E-07 2.4E-12 65.1 8.5 73 74-168 5-80 (88)
49 KOG0041 Predicted Ca2+-binding 98.7 5.8E-08 1.3E-12 75.0 7.7 67 138-206 98-164 (244)
50 cd00051 EFh EF-hand, calcium b 98.7 1.5E-07 3.1E-12 58.8 7.4 61 79-165 2-62 (63)
51 PF13833 EF-hand_8: EF-hand do 98.7 1.2E-07 2.6E-12 58.8 6.6 52 91-167 1-53 (54)
52 cd05029 S-100A6 S-100A6: S-100 98.6 3.2E-07 6.9E-12 63.0 8.9 69 75-168 8-80 (88)
53 KOG0040 Ca2+-binding actin-bun 98.6 7.8E-07 1.7E-11 85.3 12.7 120 73-203 2249-2396(2399)
54 PLN02964 phosphatidylserine de 98.6 3.8E-07 8.2E-12 83.0 9.6 78 78-183 180-271 (644)
55 KOG0031 Myosin regulatory ligh 98.6 4.6E-07 1E-11 67.3 8.2 66 138-209 31-96 (171)
56 cd00252 SPARC_EC SPARC_EC; ext 98.5 4.5E-07 9.8E-12 65.4 7.3 60 76-165 47-106 (116)
57 PF00036 EF-hand_1: EF hand; 98.5 1.6E-07 3.5E-12 50.7 3.6 27 141-167 2-28 (29)
58 cd05024 S-100A10 S-100A10: A s 98.4 1.9E-06 4.1E-11 59.1 8.3 64 139-205 8-76 (91)
59 PF00036 EF-hand_1: EF hand; 98.4 3.4E-07 7.4E-12 49.4 3.4 29 78-107 1-29 (29)
60 cd05023 S-100A11 S-100A11: S-1 98.4 3.5E-06 7.6E-11 57.9 8.5 74 74-168 6-81 (89)
61 PF13405 EF-hand_6: EF-hand do 98.4 6E-07 1.3E-11 49.2 3.7 30 140-169 1-31 (31)
62 PF12763 EF-hand_4: Cytoskelet 98.3 4.4E-06 9.6E-11 59.0 7.8 62 138-204 9-70 (104)
63 PF14658 EF-hand_9: EF-hand do 98.3 3.2E-06 6.8E-11 54.3 6.3 61 81-167 2-64 (66)
64 PF13405 EF-hand_6: EF-hand do 98.2 1.6E-06 3.5E-11 47.4 3.6 30 78-108 1-31 (31)
65 KOG2643 Ca2+ binding protein, 98.2 5.8E-06 1.3E-10 70.9 8.6 122 79-204 235-383 (489)
66 KOG0041 Predicted Ca2+-binding 98.2 1.7E-05 3.6E-10 61.6 9.5 102 72-199 94-197 (244)
67 PRK12309 transaldolase/EF-hand 98.2 7.6E-06 1.6E-10 70.8 8.1 59 135-208 330-388 (391)
68 KOG2562 Protein phosphatase 2 98.2 2.3E-05 5E-10 67.7 10.9 118 83-201 284-420 (493)
69 KOG2643 Ca2+ binding protein, 98.1 8.3E-06 1.8E-10 69.9 7.7 123 81-208 322-456 (489)
70 KOG0036 Predicted mitochondria 98.1 1E-05 2.3E-10 68.9 7.9 68 138-206 13-80 (463)
71 KOG0030 Myosin essential light 98.1 1.1E-05 2.4E-10 59.0 6.7 69 136-206 8-78 (152)
72 cd05030 calgranulins Calgranul 98.1 2.1E-05 4.6E-10 53.9 7.5 72 75-168 6-80 (88)
73 PF13202 EF-hand_5: EF hand; P 98.0 6E-06 1.3E-10 42.9 3.1 24 141-164 1-24 (25)
74 PF14788 EF-hand_10: EF hand; 98.0 2.2E-05 4.7E-10 47.6 5.9 49 155-205 1-49 (51)
75 KOG0034 Ca2+/calmodulin-depend 98.0 6.5E-05 1.4E-09 58.6 9.8 111 93-209 25-136 (187)
76 PF10591 SPARC_Ca_bdg: Secrete 98.0 3.5E-06 7.7E-11 60.5 2.0 60 138-201 53-112 (113)
77 KOG4666 Predicted phosphate ac 98.0 1.9E-05 4.2E-10 65.5 6.4 101 77-205 259-359 (412)
78 PF13202 EF-hand_5: EF hand; P 97.9 1.6E-05 3.4E-10 41.3 3.0 24 80-104 2-25 (25)
79 KOG0040 Ca2+-binding actin-bun 97.9 3E-05 6.6E-10 74.8 6.9 70 140-209 2254-2328(2399)
80 KOG4065 Uncharacterized conser 97.8 9.7E-05 2.1E-09 52.4 6.2 60 143-202 71-142 (144)
81 KOG0751 Mitochondrial aspartat 97.7 0.00017 3.6E-09 63.1 8.4 118 79-201 110-240 (694)
82 PF14788 EF-hand_10: EF hand; 97.7 0.00017 3.7E-09 43.8 5.8 50 94-168 1-50 (51)
83 PF12763 EF-hand_4: Cytoskelet 97.6 0.00033 7.2E-09 49.5 7.4 64 76-168 9-72 (104)
84 cd05024 S-100A10 S-100A10: A s 97.6 0.0011 2.4E-08 45.5 9.4 73 75-169 6-78 (91)
85 KOG4251 Calcium binding protei 97.6 0.00042 9E-09 55.6 8.2 50 43-104 117-166 (362)
86 KOG0377 Protein serine/threoni 97.6 0.00044 9.6E-09 59.8 8.4 67 81-169 551-617 (631)
87 PRK12309 transaldolase/EF-hand 97.5 0.00052 1.1E-08 59.5 9.0 51 78-167 335-385 (391)
88 KOG0046 Ca2+-binding actin-bun 97.4 0.00046 9.9E-09 60.8 7.2 66 139-205 19-85 (627)
89 PF09279 EF-hand_like: Phospho 97.4 0.00049 1.1E-08 46.3 6.0 67 140-207 1-71 (83)
90 KOG2562 Protein phosphatase 2 97.4 0.00047 1E-08 59.9 6.8 109 80-205 228-343 (493)
91 KOG4251 Calcium binding protei 97.3 0.00027 5.8E-09 56.7 3.5 68 137-204 99-167 (362)
92 KOG1029 Endocytic adaptor prot 97.1 0.0031 6.7E-08 58.0 9.3 63 138-204 194-256 (1118)
93 KOG0751 Mitochondrial aspartat 97.0 0.0073 1.6E-07 53.1 10.0 85 84-169 43-138 (694)
94 smart00054 EFh EF-hand, calciu 97.0 0.0011 2.3E-08 34.0 3.0 26 141-166 2-27 (29)
95 PF10591 SPARC_Ca_bdg: Secrete 96.9 0.00024 5.1E-09 51.0 0.3 57 79-163 56-112 (113)
96 PF05042 Caleosin: Caleosin re 96.9 0.02 4.3E-07 43.8 10.5 122 80-203 10-164 (174)
97 smart00054 EFh EF-hand, calciu 96.9 0.0014 2.9E-08 33.6 2.9 27 79-106 2-28 (29)
98 KOG0169 Phosphoinositide-speci 96.7 0.018 4E-07 53.0 10.2 125 79-206 138-275 (746)
99 KOG3555 Ca2+-binding proteogly 96.2 0.0091 2E-07 50.2 5.0 62 138-205 249-310 (434)
100 KOG1955 Ral-GTPase effector RA 95.1 0.056 1.2E-06 47.8 5.8 63 138-204 230-292 (737)
101 KOG4578 Uncharacterized conser 95.0 0.027 6E-07 47.2 3.7 63 140-206 334-399 (421)
102 PF08726 EFhand_Ca_insen: Ca2+ 94.9 0.017 3.6E-07 37.6 1.7 56 137-202 4-66 (69)
103 KOG1707 Predicted Ras related/ 94.8 0.085 1.8E-06 47.6 6.5 62 139-204 315-376 (625)
104 KOG0038 Ca2+-binding kinase in 94.8 0.054 1.2E-06 40.3 4.3 79 89-167 82-177 (189)
105 KOG0046 Ca2+-binding actin-bun 94.6 0.16 3.5E-06 45.2 7.5 71 73-167 15-85 (627)
106 KOG2243 Ca2+ release channel ( 94.5 0.065 1.4E-06 52.6 5.1 60 143-205 4061-4120(5019)
107 KOG3866 DNA-binding protein of 94.4 0.58 1.3E-05 39.2 9.9 63 142-204 247-323 (442)
108 PF05517 p25-alpha: p25-alpha 94.2 0.33 7.1E-06 36.7 7.7 64 142-205 2-69 (154)
109 KOG1029 Endocytic adaptor prot 94.2 0.068 1.5E-06 49.6 4.5 61 79-167 197-257 (1118)
110 KOG4666 Predicted phosphate ac 93.7 0.08 1.7E-06 44.5 3.7 67 138-205 258-324 (412)
111 KOG0042 Glycerol-3-phosphate d 93.5 0.17 3.7E-06 45.6 5.6 66 140-207 594-659 (680)
112 PLN02952 phosphoinositide phos 93.4 1.1 2.3E-05 41.3 10.7 68 137-205 36-110 (599)
113 KOG4347 GTPase-activating prot 92.7 0.77 1.7E-05 42.0 8.5 106 90-198 493-611 (671)
114 KOG0035 Ca2+-binding actin-bun 91.9 0.47 1E-05 45.1 6.5 71 138-208 746-819 (890)
115 PF09279 EF-hand_like: Phospho 91.4 0.71 1.5E-05 30.7 5.4 64 79-167 2-69 (83)
116 KOG4578 Uncharacterized conser 91.1 0.2 4.3E-06 42.2 2.9 61 82-167 338-398 (421)
117 KOG1265 Phospholipase C [Lipid 90.1 19 0.00041 34.8 14.9 104 100-205 183-299 (1189)
118 KOG4065 Uncharacterized conser 90.0 0.8 1.7E-05 32.8 4.7 66 81-164 71-142 (144)
119 KOG0042 Glycerol-3-phosphate d 89.5 1.8 4E-05 39.3 7.7 77 66-168 582-658 (680)
120 PF05042 Caleosin: Caleosin re 89.0 1.7 3.8E-05 33.3 6.2 66 140-205 8-124 (174)
121 KOG3555 Ca2+-binding proteogly 88.4 0.55 1.2E-05 39.9 3.5 59 81-169 254-312 (434)
122 KOG0169 Phosphoinositide-speci 88.4 1.1 2.5E-05 41.7 5.8 66 138-205 135-200 (746)
123 KOG0035 Ca2+-binding actin-bun 88.3 1.8 3.8E-05 41.4 7.1 89 73-163 743-848 (890)
124 PF09069 EF-hand_3: EF-hand; 88.1 6.6 0.00014 26.9 8.1 65 138-205 2-75 (90)
125 PF08976 DUF1880: Domain of un 84.9 0.9 1.9E-05 32.5 2.6 31 174-204 4-34 (118)
126 PLN02222 phosphoinositide phos 84.2 4 8.8E-05 37.5 7.0 68 137-206 23-91 (581)
127 KOG4347 GTPase-activating prot 84.1 1.1 2.5E-05 41.0 3.5 56 79-161 557-612 (671)
128 KOG1955 Ral-GTPase effector RA 83.3 3.6 7.7E-05 36.8 6.1 61 79-167 233-293 (737)
129 PLN02228 Phosphoinositide phos 81.8 7.4 0.00016 35.7 7.8 69 136-206 21-93 (567)
130 PF14513 DAG_kinase_N: Diacylg 81.2 2.5 5.4E-05 31.4 3.8 52 153-208 5-63 (138)
131 KOG0998 Synaptic vesicle prote 80.4 0.67 1.4E-05 44.5 0.6 63 138-204 282-344 (847)
132 KOG2871 Uncharacterized conser 79.1 1.7 3.8E-05 37.3 2.6 63 136-200 306-369 (449)
133 PLN02230 phosphoinositide phos 78.7 11 0.00023 34.9 7.8 68 137-205 27-102 (598)
134 KOG3449 60S acidic ribosomal p 77.4 15 0.00033 26.0 6.5 54 141-201 3-56 (112)
135 PLN02223 phosphoinositide phos 76.4 11 0.00024 34.3 7.0 69 137-206 14-93 (537)
136 PF04157 EAP30: EAP30/Vps36 fa 74.8 41 0.0009 26.8 9.9 15 98-112 61-75 (223)
137 KOG3866 DNA-binding protein of 73.2 9.3 0.0002 32.2 5.3 24 143-166 300-323 (442)
138 cd07313 terB_like_2 tellurium 72.3 4.7 0.0001 27.7 3.1 53 153-205 13-65 (104)
139 KOG4004 Matricellular protein 71.9 1.6 3.4E-05 34.3 0.6 55 145-203 193-248 (259)
140 cd08315 Death_TRAILR_DR4_DR5 D 70.0 33 0.00071 23.6 8.7 86 79-184 6-91 (96)
141 PF00404 Dockerin_1: Dockerin 69.4 5.6 0.00012 19.4 2.0 14 149-162 1-14 (21)
142 PF13331 DUF4093: Domain of un 68.1 35 0.00075 23.1 7.5 79 95-183 7-86 (87)
143 TIGR01848 PHA_reg_PhaR polyhyd 66.4 19 0.00042 25.3 5.0 48 147-196 11-68 (107)
144 PLN02952 phosphoinositide phos 66.1 21 0.00045 33.1 6.5 56 152-208 13-68 (599)
145 PF12174 RST: RCD1-SRO-TAF4 (R 63.4 15 0.00032 23.8 3.8 31 175-205 23-53 (70)
146 KOG0039 Ferric reductase, NADH 63.0 18 0.00038 33.9 5.6 69 136-205 15-89 (646)
147 PF07879 PHB_acc_N: PHB/PHA ac 59.7 17 0.00037 23.1 3.4 22 146-167 10-31 (64)
148 PF07308 DUF1456: Protein of u 59.2 37 0.0008 21.9 5.0 29 157-187 15-43 (68)
149 COG4103 Uncharacterized protei 58.5 15 0.00032 27.3 3.4 63 143-207 34-96 (148)
150 PF11116 DUF2624: Protein of u 57.9 56 0.0012 22.1 6.3 31 155-187 14-44 (85)
151 KOG1707 Predicted Ras related/ 57.6 15 0.00032 33.7 4.0 40 71-111 309-348 (625)
152 PF01023 S_100: S-100/ICaBP ty 57.2 36 0.00078 19.8 4.3 29 78-106 7-36 (44)
153 PF13608 Potyvirid-P3: Protein 55.8 57 0.0012 29.1 7.3 35 74-110 286-320 (445)
154 PF12486 DUF3702: ImpA domain 54.6 90 0.0019 23.4 7.2 47 59-106 51-97 (148)
155 cd08316 Death_FAS_TNFRSF6 Deat 54.2 70 0.0015 22.1 6.2 79 93-185 16-94 (97)
156 PF08414 NADPH_Ox: Respiratory 53.3 75 0.0016 22.1 7.6 62 137-206 28-93 (100)
157 PF09069 EF-hand_3: EF-hand; 53.0 25 0.00053 24.1 3.6 73 77-167 3-75 (90)
158 PF09068 EF-hand_2: EF hand; 52.5 18 0.0004 26.3 3.2 27 141-167 99-125 (127)
159 PF03979 Sigma70_r1_1: Sigma-7 50.3 16 0.00035 24.3 2.4 32 152-187 18-49 (82)
160 KOG1954 Endocytosis/signaling 49.3 24 0.00052 30.9 3.7 56 141-201 446-501 (532)
161 PF07499 RuvA_C: RuvA, C-termi 46.4 58 0.0013 19.0 4.1 40 158-203 3-42 (47)
162 KOG0998 Synaptic vesicle prote 46.2 12 0.00026 36.2 1.7 63 139-205 11-73 (847)
163 PTZ00373 60S Acidic ribosomal 44.7 85 0.0018 22.4 5.4 53 142-201 6-58 (112)
164 KOG4403 Cell surface glycoprot 44.6 87 0.0019 27.8 6.4 79 76-184 67-146 (575)
165 PRK09430 djlA Dna-J like membr 42.4 1.8E+02 0.0039 24.0 7.9 91 90-186 67-175 (267)
166 PF05099 TerB: Tellurite resis 41.8 6.5 0.00014 28.5 -0.7 11 154-164 38-48 (140)
167 TIGR02675 tape_meas_nterm tape 41.1 41 0.0009 21.9 3.2 16 152-167 27-42 (75)
168 PF08461 HTH_12: Ribonuclease 40.0 42 0.0009 21.3 3.0 38 151-190 9-46 (66)
169 PF01885 PTS_2-RNA: RNA 2'-pho 40.0 51 0.0011 25.7 4.1 37 149-187 26-62 (186)
170 cd05833 Ribosomal_P2 Ribosomal 37.5 1.2E+02 0.0027 21.4 5.4 55 143-204 5-59 (109)
171 cd08315 Death_TRAILR_DR4_DR5 D 36.3 94 0.002 21.3 4.5 40 138-185 3-42 (96)
172 cd08784 Death_DRs Death Domain 36.1 1.3E+02 0.0027 19.8 5.7 64 94-171 8-72 (79)
173 TIGR03573 WbuX N-acetyl sugar 35.8 81 0.0018 27.0 5.0 43 153-203 300-342 (343)
174 PF09068 EF-hand_2: EF hand; 35.4 1.4E+02 0.003 21.6 5.5 68 137-204 39-124 (127)
175 PF05517 p25-alpha: p25-alpha 35.2 1.9E+02 0.0041 21.6 6.5 58 89-168 13-70 (154)
176 KOG4629 Predicted mechanosensi 34.7 96 0.0021 29.5 5.6 61 140-209 405-465 (714)
177 cd00086 homeodomain Homeodomai 34.0 1E+02 0.0022 18.1 5.2 38 139-185 13-50 (59)
178 PRK00819 RNA 2'-phosphotransfe 33.3 86 0.0019 24.3 4.4 36 150-187 28-63 (179)
179 cd07316 terB_like_DjlA N-termi 32.6 1.6E+02 0.0034 19.9 5.5 7 154-160 14-20 (106)
180 PF04391 DUF533: Protein of un 32.5 1.8E+02 0.0039 22.7 6.0 89 89-183 90-184 (188)
181 PF14513 DAG_kinase_N: Diacylg 32.1 1.3E+02 0.0027 22.3 4.9 34 153-187 46-79 (138)
182 KOG2871 Uncharacterized conser 31.3 65 0.0014 28.1 3.6 33 78-111 310-342 (449)
183 KOG2243 Ca2+ release channel ( 30.9 1.8E+02 0.0039 30.5 6.7 52 81-133 4061-4120(5019)
184 smart00513 SAP Putative DNA-bi 29.6 99 0.0022 16.6 4.4 25 155-179 3-27 (35)
185 PF07492 Trehalase_Ca-bi: Neut 28.1 18 0.00039 19.3 -0.1 18 180-197 2-19 (30)
186 PF09373 PMBR: Pseudomurein-bi 28.1 63 0.0014 17.4 2.1 15 191-205 2-16 (33)
187 PRK09430 djlA Dna-J like membr 27.8 1.6E+02 0.0035 24.3 5.4 10 153-162 69-78 (267)
188 cd07176 terB tellurite resista 27.6 33 0.00071 23.5 1.1 14 154-167 17-30 (111)
189 PF02037 SAP: SAP domain; Int 27.5 1.1E+02 0.0024 16.6 4.1 24 155-178 3-26 (35)
190 COG5069 SAC6 Ca2+-binding acti 27.4 3.7E+02 0.0079 24.5 7.6 95 69-164 477-582 (612)
191 PF03672 UPF0154: Uncharacteri 25.5 1.7E+02 0.0038 18.6 4.0 32 153-186 29-60 (64)
192 PLN00138 large subunit ribosom 25.1 2.6E+02 0.0056 19.9 5.4 50 144-200 6-55 (113)
193 KOG2301 Voltage-gated Ca2+ cha 25.0 82 0.0018 32.8 3.7 38 71-109 1411-1448(1592)
194 TIGR00135 gatC glutamyl-tRNA(G 25.0 1.3E+02 0.0027 20.3 3.6 29 156-186 1-29 (93)
195 PF00714 IFN-gamma: Interferon 24.9 2.8 6.1E-05 30.9 -4.8 17 1-17 2-18 (138)
196 PF04558 tRNA_synt_1c_R1: Glut 24.8 83 0.0018 24.0 2.9 53 131-186 77-129 (164)
197 PF01988 VIT1: VIT family; In 24.3 1.4E+02 0.003 23.6 4.3 96 91-192 10-112 (213)
198 COG4359 Uncharacterized conser 24.3 3.5E+02 0.0075 21.4 6.1 17 89-105 8-24 (220)
199 PRK14981 DNA-directed RNA poly 24.2 1.4E+02 0.0031 21.1 3.9 10 137-146 80-89 (112)
200 cd08313 Death_TNFR1 Death doma 24.0 2.2E+02 0.0048 18.8 5.9 63 95-171 9-73 (80)
201 PF10437 Lip_prot_lig_C: Bacte 24.0 1.7E+02 0.0036 19.2 4.0 28 137-164 57-85 (86)
202 PF02761 Cbl_N2: CBL proto-onc 22.2 2.6E+02 0.0056 18.9 6.1 47 154-202 21-67 (85)
203 KOG2301 Voltage-gated Ca2+ cha 22.1 65 0.0014 33.5 2.3 71 135-206 1413-1485(1592)
204 PRK00523 hypothetical protein; 22.0 2.2E+02 0.0047 18.6 4.0 32 153-186 37-68 (72)
205 PF00046 Homeobox: Homeobox do 22.0 1.8E+02 0.004 17.1 4.9 40 139-184 10-49 (57)
206 KOG4004 Matricellular protein 21.9 38 0.00083 26.8 0.6 28 138-165 221-248 (259)
207 PRK00034 gatC aspartyl/glutamy 21.5 1.7E+02 0.0036 19.7 3.7 30 155-186 2-31 (95)
208 PF09107 SelB-wing_3: Elongati 20.1 1.3E+02 0.0027 18.0 2.5 32 152-190 7-38 (50)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.92 E-value=3e-24 Score=161.45 Aligned_cols=131 Identities=27% Similarity=0.506 Sum_probs=116.2
Q ss_pred hhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcc-cchh----h---ccCCHHHHHHHHhc---cCCCHHHH
Q 028383 73 SQDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPE-GEEL----P---QKLGSRELSRLFEE---KEPSLEEV 141 (210)
Q Consensus 73 ~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~-~~~l----~---~~id~~EF~~~~~~---~~~~~~~l 141 (210)
..++++++++|..+| .|++|.|++.||..+|+.+|.+++.. +.++ . +.|+|.+|+.++.. .....+++
T Consensus 16 ~~qi~~lkeaF~l~D-~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~~Eel 94 (160)
T COG5126 16 EEQIQELKEAFQLFD-RDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDKEEEL 94 (160)
T ss_pred HHHHHHHHHHHHHhC-cCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCcHHHH
Confidence 345677889999999 99999999999999999999998853 3333 3 45789999998874 46678999
Q ss_pred HHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q 028383 142 KDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 142 ~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~ 206 (210)
+.||+.||.|++|+|+..||+.+|+.+|.. +++++++.+++.+|.|++|.|+|++|++.+...
T Consensus 95 ~~aF~~fD~d~dG~Is~~eL~~vl~~lge~--~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 95 REAFKLFDKDHDGYISIGELRRVLKSLGER--LSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred HHHHHHhCCCCCceecHHHHHHHHHhhccc--CCHHHHHHHHHhcCCCCCceEeHHHHHHHHhcc
Confidence 999999999999999999999999999977 999999999999999999999999999988653
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.89 E-value=1.8e-22 Score=152.84 Aligned_cols=129 Identities=36% Similarity=0.549 Sum_probs=112.6
Q ss_pred hHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcc-cchhh--------ccCCHHHHHHHHhccC-------CCH
Q 028383 75 DFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPE-GEELP--------QKLGSRELSRLFEEKE-------PSL 138 (210)
Q Consensus 75 ~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~-~~~l~--------~~id~~EF~~~~~~~~-------~~~ 138 (210)
+..+++++|..+| ++++|.|+..||..+++.+|..++.. ...+. +.|+++||+.++.... ...
T Consensus 6 ~~~el~~~F~~fD-~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 6 QILELKEAFQLFD-KDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHHC-CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 3556889999999 99999999999999999999998853 33332 3488999999887431 135
Q ss_pred HHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q 028383 139 EEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 139 ~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~ 206 (210)
+.++.||+.||+|++|+||..||+.+|..+|.+ .+.++++.+++.+|.|+||.|+|++|+++|...
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~--~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGEK--LTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc--CCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 689999999999999999999999999999977 999999999999999999999999999999753
No 3
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.83 E-value=1.3e-19 Score=133.11 Aligned_cols=130 Identities=19% Similarity=0.335 Sum_probs=115.2
Q ss_pred hhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcc-cchhh----ccCCHHHHHHHHhcc---CCCHHHHHHH
Q 028383 73 SQDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPE-GEELP----QKLGSRELSRLFEEK---EPSLEEVKDA 144 (210)
Q Consensus 73 ~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~-~~~l~----~~id~~EF~~~~~~~---~~~~~~l~~~ 144 (210)
..|+++|+++|..+| .|+||.|..++|+..+.++|..++.+ +..++ +.|+|.-|+.++.++ .++++.+..|
T Consensus 28 q~QIqEfKEAF~~mD-qnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~A 106 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMD-QNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNA 106 (171)
T ss_pred HHHHHHHHHHHHHHh-ccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 456888999999999 99999999999999999999987732 22222 348899999998753 5668899999
Q ss_pred hHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 145 FDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 145 F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
|+.||.+++|.|..+.|+.+|...|.+ +++++++.+++.+-.+..|.|+|..|+.++..
T Consensus 107 F~~FD~~~~G~I~~d~lre~Ltt~gDr--~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 107 FKTFDDEGSGKIDEDYLRELLTTMGDR--FTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHhcCccCCCccCHHHHHHHHHHhccc--CCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 999999999999999999999999977 99999999999999999999999999999974
No 4
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.81 E-value=6.7e-19 Score=127.32 Aligned_cols=126 Identities=23% Similarity=0.367 Sum_probs=108.7
Q ss_pred HHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcc-cchh----------hccCCHHHHHHHHhc-----cCCCHH
Q 028383 76 FKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPE-GEEL----------PQKLGSRELSRLFEE-----KEPSLE 139 (210)
Q Consensus 76 ~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~-~~~l----------~~~id~~EF~~~~~~-----~~~~~~ 139 (210)
..+|+++|..|| ..+||+|+..++..+|+.+|.+|+.. +.+. .+.++|++|+.+++. ...+.+
T Consensus 10 ~~e~ke~F~lfD-~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~e 88 (152)
T KOG0030|consen 10 MEEFKEAFLLFD-RTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYE 88 (152)
T ss_pred HHHHHHHHHHHh-ccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHH
Confidence 467889999999 99999999999999999999999852 2222 245899999988752 345678
Q ss_pred HHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 140 EVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 140 ~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
..-+-.+.||++++|.|...||+++|..+|.+ +++++++.++.-. .|.+|.|+|+.|++.+..
T Consensus 89 dfvegLrvFDkeg~G~i~~aeLRhvLttlGek--l~eeEVe~Llag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 89 DFVEGLRVFDKEGNGTIMGAELRHVLTTLGEK--LTEEEVEELLAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred HHHHHHHhhcccCCcceeHHHHHHHHHHHHhh--ccHHHHHHHHccc-cccCCcCcHHHHHHHHhc
Confidence 88899999999999999999999999999977 9999999999876 578899999999987753
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.6e-18 Score=127.13 Aligned_cols=126 Identities=25% Similarity=0.368 Sum_probs=110.6
Q ss_pred HHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcc-cchhh--------ccCCHHHHHHHHhc---cCCCHHHHHHH
Q 028383 77 KLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPE-GEELP--------QKLGSRELSRLFEE---KEPSLEEVKDA 144 (210)
Q Consensus 77 ~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~-~~~l~--------~~id~~EF~~~~~~---~~~~~~~l~~~ 144 (210)
++++.+|..|| .+++|+|+.+||+.+++.+|+.+..+ +..+. +.|+|++|...+.. ...+.+.++.+
T Consensus 33 q~i~e~f~lfd-~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFD-PDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhc-cCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 34569999999 99999999999999999999998743 22222 35889999887653 34589999999
Q ss_pred hHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 145 FDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 145 F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
|+.+|-|++|.|+..+|+.+...+|.. ++++++.+++.++|.++||.|+-+||..+|++
T Consensus 112 frl~D~D~~Gkis~~~lkrvakeLgen--ltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAKELGEN--LTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHHHhCcc--ccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 999999999999999999999999966 99999999999999999999999999999875
No 6
>PTZ00183 centrin; Provisional
Probab=99.77 E-value=2e-17 Score=125.26 Aligned_cols=128 Identities=25% Similarity=0.355 Sum_probs=109.1
Q ss_pred hHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcc-cchhh--------ccCCHHHHHHHHhc---cCCCHHHHH
Q 028383 75 DFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPE-GEELP--------QKLGSRELSRLFEE---KEPSLEEVK 142 (210)
Q Consensus 75 ~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~-~~~l~--------~~id~~EF~~~~~~---~~~~~~~l~ 142 (210)
+.++++++|..+| .+++|.|+..||..+++.+|..++.. ...+. +.|++.||+.++.. .....+.++
T Consensus 15 ~~~~~~~~F~~~D-~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 93 (158)
T PTZ00183 15 QKKEIREAFDLFD-TDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEIL 93 (158)
T ss_pred HHHHHHHHHHHhC-CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHH
Confidence 4556779999999 99999999999999999998765532 33332 34889999887653 345567899
Q ss_pred HHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 143 DAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 143 ~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
.+|+.+|++++|+|+.+||..++...|.+ ++.+++..++..+|.+++|.|+|++|+.++..
T Consensus 94 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~--l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 94 KAFRLFDDDKTGKISLKNLKRVAKELGET--ITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCC--CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 99999999999999999999999999866 99999999999999999999999999999865
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.76 E-value=2.7e-17 Score=122.99 Aligned_cols=127 Identities=33% Similarity=0.494 Sum_probs=107.9
Q ss_pred HHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcc-cchhh--------ccCCHHHHHHHHhc---cCCCHHHHHH
Q 028383 76 FKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPE-GEELP--------QKLGSRELSRLFEE---KEPSLEEVKD 143 (210)
Q Consensus 76 ~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~-~~~l~--------~~id~~EF~~~~~~---~~~~~~~l~~ 143 (210)
.+.+++.|..+| .+++|.|+.+||..++..+|..++.. ...+. +.|++++|+.++.. .......++.
T Consensus 10 ~~~~~~~F~~~D-~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 88 (149)
T PTZ00184 10 IAEFKEAFSLFD-KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKE 88 (149)
T ss_pred HHHHHHHHHHHc-CCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHH
Confidence 455679999999 99999999999999999988766532 23332 35889999987763 2345577899
Q ss_pred HhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 144 AFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 144 ~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
+|+.+|.+++|+|+.+|+..++..+|.+ ++.+++..++..+|.+++|.|+|+||+.++..
T Consensus 89 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 89 AFKVFDRDGNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHhhCCCCCCeEeHHHHHHHHHHHCCC--CCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 9999999999999999999999999865 89999999999999999999999999998864
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.63 E-value=6.9e-15 Score=114.44 Aligned_cols=123 Identities=20% Similarity=0.404 Sum_probs=104.9
Q ss_pred HHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCC-Cc-ccchh--------hccCCHHHHHHHHhccCCCHHHHHHHh
Q 028383 76 FKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFC-SP-EGEEL--------PQKLGSRELSRLFEEKEPSLEEVKDAF 145 (210)
Q Consensus 76 ~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~-~~-~~~~l--------~~~id~~EF~~~~~~~~~~~~~l~~~F 145 (210)
+..+...|...| +|++|.|+.+||+.+|...+..+ +. ++.-+ .+.|++.||.+++.. ...|+.+|
T Consensus 56 ~~~~~~~f~~vD-~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~----i~~Wr~vF 130 (221)
T KOG0037|consen 56 FPQLAGWFQSVD-RDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY----INQWRNVF 130 (221)
T ss_pred cHHHHHHHHhhC-ccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH----HHHHHHHH
Confidence 445668999999 99999999999999998554332 21 23333 345889999999875 67899999
Q ss_pred HhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 146 DVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 146 ~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
+.+|+|++|.|+..||+.+|..+|.. ++++-.+.+++++|..++|.|.|++|+.++..
T Consensus 131 ~~~D~D~SG~I~~sEL~~Al~~~Gy~--Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 131 RTYDRDRSGTIDSSELRQALTQLGYR--LSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HhcccCCCCcccHHHHHHHHHHcCcC--CCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 99999999999999999999999988 99999999999999888999999999998754
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.61 E-value=7.7e-15 Score=113.95 Aligned_cols=128 Identities=25% Similarity=0.397 Sum_probs=98.0
Q ss_pred hhHHHHHHHhHhhhccC-CCCcccHHHHHHHHHhcCCCCCcccchhh--------cc-CCHHHHHHHHh---ccCCCHHH
Q 028383 74 QDFKLCSKQASCNEKKH-DDESLSRDQVETVMTNLTLFCSPEGEELP--------QK-LGSRELSRLFE---EKEPSLEE 140 (210)
Q Consensus 74 ~~~~~~~~~F~~~D~~d-~~G~Is~~El~~~l~~lg~~~~~~~~~l~--------~~-id~~EF~~~~~---~~~~~~~~ 140 (210)
.++.-+...|.++| .+ ++|.|+.+||..+. .+..+|- ...+. +. |+|++|+..+. ......++
T Consensus 30 ~EI~~L~~rF~kl~-~~~~~g~lt~eef~~i~-~~~~Np~--~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~K 105 (187)
T KOG0034|consen 30 NEIERLYERFKKLD-RNNGDGYLTKEEFLSIP-ELALNPL--ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREK 105 (187)
T ss_pred HHHHHHHHHHHHhc-cccccCccCHHHHHHHH-HHhcCcH--HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHH
Confidence 34555678999999 88 99999999999988 3333332 22222 22 89999988765 34444569
Q ss_pred HHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCc--HH----HHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q 028383 141 VKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQ--LE----NCKKMIKTFDENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 141 l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls--~~----~~~~l~~~~D~~~dG~Is~~eF~~~~~~~ 206 (210)
++-||++||.+++|+|+.+|+..++..+-.. ..+ ++ .++.++.++|.++||+|+|+||++++.+.
T Consensus 106 l~faF~vYD~~~~G~I~reel~~iv~~~~~~-~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 106 LRFAFRVYDLDGDGFISREELKQILRMMVGE-NDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhcCCCCCcCcHHHHHHHHHHHHcc-CCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 9999999999999999999999999986321 122 33 44677888999999999999999998764
No 10
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.49 E-value=3.8e-13 Score=113.26 Aligned_cols=121 Identities=22% Similarity=0.294 Sum_probs=105.5
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHhcCCC-CCcc-cc--------hhhccCCHHHHHHHHhccCCCHHHHHHHhHhh
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTNLTLF-CSPE-GE--------ELPQKLGSRELSRLFEEKEPSLEEVKDAFDVF 148 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~-~~~~-~~--------~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~ 148 (210)
++.+|+.+| .+++|.++..++..++..++.+ +... .. +-...+||.||...+.. .+..+..+|+..
T Consensus 16 ~~~lf~~lD-~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~---~E~~l~~~F~~i 91 (463)
T KOG0036|consen 16 IRCLFKELD-SKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN---KELELYRIFQSI 91 (463)
T ss_pred HHHHHHHhc-cCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH---hHHHHHHHHhhh
Confidence 568999999 9999999999999999999877 3222 22 22345899999999875 356799999999
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 149 DENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 149 D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
|.++||.|...|+.+.|+.+|.+ +++++++.+++.+|.++++.|+++||...+.-
T Consensus 92 D~~hdG~i~~~Ei~~~l~~~gi~--l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 92 DLEHDGKIDPNEIWRYLKDLGIQ--LSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred ccccCCccCHHHHHHHHHHhCCc--cCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 99999999999999999999987 99999999999999999999999999988753
No 11
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.46 E-value=2.6e-13 Score=93.32 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=61.4
Q ss_pred HHHHHHHhHhhcC-CCCCcccHHHHHHHHHH-hCCCCCCcH-HHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q 028383 138 LEEVKDAFDVFDE-NKDGFIDALELQRVLCI-LGMKEGFQL-ENCKKMIKTFDENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 138 ~~~l~~~F~~~D~-d~~G~Is~~El~~~l~~-~g~~~~ls~-~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~ 206 (210)
...++.+|+.||+ +++|+|+..||+.+|.. +|.. +++ ++++.+++.+|.|+||.|+|+||+.+|.+.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~--ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHL--LKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhh--ccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3568999999999 99999999999999999 8865 787 999999999999999999999999998764
No 12
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.45 E-value=4.7e-13 Score=86.93 Aligned_cols=64 Identities=42% Similarity=0.735 Sum_probs=54.6
Q ss_pred HHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCC--CCcHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028383 140 EVKDAFDVFDENKDGFIDALELQRVLCILGMKE--GFQLENCKKMIKTFDENGDGRIDFKEFVKFM 203 (210)
Q Consensus 140 ~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~--~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~ 203 (210)
.++.+|+.+|+|++|+|+.+||..++..++.+. ...++.++.+++.+|.|+||.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 378999999999999999999999999998540 1234555666999999999999999999876
No 13
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.44 E-value=1.4e-12 Score=101.59 Aligned_cols=125 Identities=18% Similarity=0.280 Sum_probs=95.1
Q ss_pred HHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcc--cchh--------hccCCHHHHHHHHh--ccCCCHHHHHHHhHhh
Q 028383 81 KQASCNEKKHDDESLSRDQVETVMTNLTLFCSPE--GEEL--------PQKLGSRELSRLFE--EKEPSLEEVKDAFDVF 148 (210)
Q Consensus 81 ~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~--~~~l--------~~~id~~EF~~~~~--~~~~~~~~l~~~F~~~ 148 (210)
.+++.|=....+|.++.++++.++..+....++. .+.+ .+.|+|.||+..++ .+....+.++.+|++|
T Consensus 30 ~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~ly 109 (193)
T KOG0044|consen 30 QWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLY 109 (193)
T ss_pred HHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheee
Confidence 4444443134689999999999999887644322 2222 24589999988876 3566788899999999
Q ss_pred cCCCCCcccHHHHHHHHHHh----CC-----CCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 149 DENKDGFIDALELQRVLCIL----GM-----KEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 149 D~d~~G~Is~~El~~~l~~~----g~-----~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
|.||+|+|+.+|+..++..+ |. .....++.++.+|+++|.|+||.||++||......
T Consensus 110 D~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 110 DLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 99999999999999988863 32 11235677899999999999999999999987643
No 14
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.36 E-value=4.1e-12 Score=87.31 Aligned_cols=66 Identities=27% Similarity=0.462 Sum_probs=60.3
Q ss_pred HHHHHHhHhhc-CCCCC-cccHHHHHHHHHH-----hCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q 028383 139 EEVKDAFDVFD-ENKDG-FIDALELQRVLCI-----LGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 139 ~~l~~~F~~~D-~d~~G-~Is~~El~~~l~~-----~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~ 206 (210)
..++.+|+.|| +||+| +|+.+||+.+|+. +|.. .++++++.+++.+|.|++|.|+|+||+.++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~--~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEI--KEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCC--CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46899999998 89999 5999999999999 8865 789999999999999999999999999988654
No 15
>PLN02964 phosphatidylserine decarboxylase
Probab=99.35 E-value=1e-11 Score=112.17 Aligned_cols=105 Identities=13% Similarity=0.204 Sum_probs=90.4
Q ss_pred hhhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcC-CCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcC
Q 028383 72 KSQDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLT-LFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDE 150 (210)
Q Consensus 72 ~~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg-~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~ 150 (210)
..+++++++++|..+| .|++|.| +..+++.+| ..++.. ....++.+|+.+|.
T Consensus 138 ~~kqi~elkeaF~lfD-~dgdG~i----Lg~ilrslG~~~pte~----------------------e~~fi~~mf~~~D~ 190 (644)
T PLN02964 138 VTQEPESACESFDLLD-PSSSNKV----VGSIFVSCSIEDPVET----------------------ERSFARRILAIVDY 190 (644)
T ss_pred cHHHHHHHHHHHHHHC-CCCCCcC----HHHHHHHhCCCCCCHH----------------------HHHHHHHHHHHhCC
Confidence 3455678889999999 9999997 888999999 466510 01238999999999
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 151 NKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 151 d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
|++|.|+.+||..++..++.. .+++++..+|+.+|.|++|.|+++||..+|..
T Consensus 191 DgdG~IdfdEFl~lL~~lg~~--~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 191 DEDGQLSFSEFSDLIKAFGNL--VAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCCeEcHHHHHHHHHHhccC--CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 999999999999999988854 78999999999999999999999999999876
No 16
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.29 E-value=1.1e-10 Score=99.34 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=111.7
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHhhhhccchhhhhhhhhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhc---CCCCC
Q 028383 36 FHKFLTMISCVNTFFLSHRSFVQSQFESCESRNWDEKSQDFKLCSKQASCNEKKHDDESLSRDQVETVMTNL---TLFCS 112 (210)
Q Consensus 36 ~~~~l~~f~~~~~lk~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~l---g~~~~ 112 (210)
.-.++.--++.+.+...++..+...+.+...+ +.+.|..+| .+.+|+|+...+..++... |+++.
T Consensus 434 ~t~~~tlrqR~~~vEeSAlk~Lrerl~s~~sd-----------L~~eF~~~D-~~ksG~lsis~Wa~~mE~i~~L~LPWr 501 (631)
T KOG0377|consen 434 QTKRLTLRQRMGIVEESALKELRERLRSHRSD-----------LEDEFRKYD-PKKSGKLSISHWAKCMENITGLNLPWR 501 (631)
T ss_pred hhhhhhHHHHhhHHHHHHHHHHHHHHHhhhhH-----------HHHHHHhcC-hhhcCeeeHHHHHHHHHHHhcCCCcHH
Confidence 33344555567777788888888777654433 337788999 9999999999999998753 44432
Q ss_pred cccchh-----hccCCHHHHHHHHh--------------ccCCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhC--CC
Q 028383 113 PEGEEL-----PQKLGSRELSRLFE--------------EKEPSLEEVKDAFDVFDENKDGFIDALELQRVLCILG--MK 171 (210)
Q Consensus 113 ~~~~~l-----~~~id~~EF~~~~~--------------~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g--~~ 171 (210)
.-...+ .+.+.|.+.+..+. .-......+..+|+.+|.|++|.||.+||+.+...++ .+
T Consensus 502 ~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~ 581 (631)
T KOG0377|consen 502 LLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMN 581 (631)
T ss_pred HhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcC
Confidence 111111 12334433332221 1122345688999999999999999999999988764 23
Q ss_pred CCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028383 172 EGFQLENCKKMIKTFDENGDGRIDFKEFVKFME 204 (210)
Q Consensus 172 ~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~ 204 (210)
..++++++.++.+.+|.|+||.|++.||++.++
T Consensus 582 ~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 582 GAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred CCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 458999999999999999999999999999875
No 17
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.24 E-value=4.4e-11 Score=83.10 Aligned_cols=68 Identities=22% Similarity=0.330 Sum_probs=57.1
Q ss_pred HHHHHHhHhhc-CCCCC-cccHHHHHHHHHH-hCC--CCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q 028383 139 EEVKDAFDVFD-ENKDG-FIDALELQRVLCI-LGM--KEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 139 ~~l~~~F~~~D-~d~~G-~Is~~El~~~l~~-~g~--~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~ 206 (210)
..++.+|+.|| +||+| +|+..||+.++.. .+. ....++.+++.+++.+|.|+||.|+|+||+.+|.+.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 45888999999 88998 5999999999976 221 112478899999999999999999999999998753
No 18
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.24 E-value=4.1e-11 Score=83.43 Aligned_cols=66 Identities=23% Similarity=0.445 Sum_probs=58.7
Q ss_pred HHHHHHHhHhhcC-CC-CCcccHHHHHHHHHH-----hCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 138 LEEVKDAFDVFDE-NK-DGFIDALELQRVLCI-----LGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 138 ~~~l~~~F~~~D~-d~-~G~Is~~El~~~l~~-----~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
...++.+|..||. |+ +|+|+.+||+.+|.. +|.. .++++++.+++.+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~--~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQ--KDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcc--ccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3568999999997 97 799999999999986 4544 78999999999999999999999999998865
No 19
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.24 E-value=5.2e-11 Score=82.57 Aligned_cols=69 Identities=29% Similarity=0.530 Sum_probs=59.2
Q ss_pred HHHHHHHhHhhc-CCCCCc-ccHHHHHHHHHH-hCCC--CCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q 028383 138 LEEVKDAFDVFD-ENKDGF-IDALELQRVLCI-LGMK--EGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 138 ~~~l~~~F~~~D-~d~~G~-Is~~El~~~l~~-~g~~--~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~ 206 (210)
.+.++.+|+.|| .+++|+ |+..||+.+|+. +|.. ...++++++.+++.+|.+++|.|+|++|+.++.+.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 356899999997 999995 999999999985 5421 12588999999999999999999999999988764
No 20
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.24 E-value=4.6e-11 Score=82.09 Aligned_cols=66 Identities=21% Similarity=0.424 Sum_probs=59.1
Q ss_pred HHHHHHhHhhcC-CC-CCcccHHHHHHHHHH---hCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q 028383 139 EEVKDAFDVFDE-NK-DGFIDALELQRVLCI---LGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 139 ~~l~~~F~~~D~-d~-~G~Is~~El~~~l~~---~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~ 206 (210)
..+-.+|..||. || +|+|+.+||+.+|.. +|.+ +++++++++++.+|.|++|.|+|+||+.+|.+.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k--~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSK--LQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 457889999998 77 899999999999973 5765 899999999999999999999999999998764
No 21
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.21 E-value=7.1e-11 Score=76.51 Aligned_cols=60 Identities=25% Similarity=0.358 Sum_probs=55.7
Q ss_pred HHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 142 KDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 142 ~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
+.+|+.+|+|++|.|+.+|++.++...| .+.++++.++..+|.+++|.|+|+||+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g----~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG----LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC----CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 5789999999999999999999999877 57889999999999999999999999998864
No 22
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.18 E-value=1.4e-10 Score=81.00 Aligned_cols=64 Identities=23% Similarity=0.340 Sum_probs=59.2
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
...++.+|+.+|.|++|.|+.+|++.+++..| +++++++.++..+|.+++|.|+|+||+.++..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~----~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG----LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC----CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 45789999999999999999999999999866 78899999999999999999999999998864
No 23
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.17 E-value=1.7e-10 Score=87.16 Aligned_cols=69 Identities=42% Similarity=0.628 Sum_probs=64.4
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhhh
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSFV 208 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~~ 208 (210)
...++.+|+.||+|++|+|+..||..+++.+|.. .++.++..++..+|.+++|.|++++|+.+|.+...
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~--~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQN--PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 4679999999999999999999999999999976 89999999999999999999999999999986543
No 24
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.13 E-value=3.4e-10 Score=77.91 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=57.9
Q ss_pred HHHHHHHhHh-hcCCCCC-cccHHHHHHHHHHhCC---CCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q 028383 138 LEEVKDAFDV-FDENKDG-FIDALELQRVLCILGM---KEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 138 ~~~l~~~F~~-~D~d~~G-~Is~~El~~~l~~~g~---~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~ 206 (210)
...+..+|+. +|++|+| +|+.+||+.++..... ....++.+++.+++.+|.|+||.|+|+||+.+|...
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3568899999 7888976 9999999999987521 012678899999999999999999999999988754
No 25
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.12 E-value=3e-10 Score=77.95 Aligned_cols=70 Identities=26% Similarity=0.428 Sum_probs=60.2
Q ss_pred HHHHHHHhHhhcC--CCCCcccHHHHHHHHHH-hCCC--CCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhh
Q 028383 138 LEEVKDAFDVFDE--NKDGFIDALELQRVLCI-LGMK--EGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSF 207 (210)
Q Consensus 138 ~~~l~~~F~~~D~--d~~G~Is~~El~~~l~~-~g~~--~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~ 207 (210)
.+.++.+|..+|+ |++|.|+.+||..+++. +|.+ ...+.++++.++..+|.+++|.|+|++|+.++....
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 4568999999999 89999999999999986 4532 124689999999999999999999999999987653
No 26
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.10 E-value=3.4e-10 Score=73.33 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=54.8
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccH
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDA 158 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~ 158 (210)
++++|..+| +|++|.|+.+||..+++.++...+.. ...+.+..+|+.+|+|++|.|+.
T Consensus 2 l~~~F~~~D-~d~~G~i~~~el~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~D~d~dG~i~~ 59 (66)
T PF13499_consen 2 LKEAFKKFD-KDGDGYISKEELRRALKHLGRDMSDE---------------------ESDEMIDQIFREFDTDGDGRISF 59 (66)
T ss_dssp HHHHHHHHS-TTSSSEEEHHHHHHHHHHTTSHSTHH---------------------HHHHHHHHHHHHHTTTSSSSEEH
T ss_pred HHHHHHHHc-CCccCCCCHHHHHHHHHHhcccccHH---------------------HHHHHHHHHHHHhCCCCcCCCcH
Confidence 468999999 99999999999999999998765410 11346788899999999999999
Q ss_pred HHHHHHH
Q 028383 159 LELQRVL 165 (210)
Q Consensus 159 ~El~~~l 165 (210)
+||..++
T Consensus 60 ~Ef~~~~ 66 (66)
T PF13499_consen 60 DEFLNFM 66 (66)
T ss_dssp HHHHHHH
T ss_pred HHHhccC
Confidence 9998864
No 27
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.09 E-value=5.3e-10 Score=69.57 Aligned_cols=53 Identities=40% Similarity=0.763 Sum_probs=48.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 152 KDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 152 ~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
.+|.|+.++|+.+|..+|.+. ++++++..++..+|.+++|.|+|+||+.+|.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~-~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKD-LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSS-SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCC-CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999998888532 89999999999999999999999999999875
No 28
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.06 E-value=1.2e-09 Score=68.63 Aligned_cols=61 Identities=43% Similarity=0.768 Sum_probs=57.0
Q ss_pred HHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028383 141 VKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFM 203 (210)
Q Consensus 141 l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~ 203 (210)
+..+|+.+|.+++|.|+.+|+..++..++.+ .+.+.+..++..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEG--LSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC--CCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5788999999999999999999999999866 899999999999999999999999998865
No 29
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.02 E-value=1.3e-09 Score=78.53 Aligned_cols=61 Identities=25% Similarity=0.302 Sum_probs=54.4
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFME 204 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~ 204 (210)
...+..+|..+|.|++|+|+.+||..+. ++ ..+..+..++..+|.|+||.||++||...+.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~----~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LD----PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc----chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 4678999999999999999999999876 33 4577889999999999999999999999984
No 30
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.98 E-value=2.5e-09 Score=80.75 Aligned_cols=66 Identities=35% Similarity=0.664 Sum_probs=45.2
Q ss_pred HHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhh
Q 028383 139 EEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSF 207 (210)
Q Consensus 139 ~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~ 207 (210)
+.++++|..+|+|++|.|+..||..+++.+|.. .++.++..++..+|. +.|.|+|.+|+.+|....
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~--~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFN--PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCC--CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 456677777777777777777777777766655 667777777777766 666677777777665443
No 31
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.97 E-value=7.8e-09 Score=80.64 Aligned_cols=108 Identities=24% Similarity=0.411 Sum_probs=88.0
Q ss_pred CCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhc---cCCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHh
Q 028383 92 DESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEE---KEPSLEEVKDAFDVFDENKDGFIDALELQRVLCIL 168 (210)
Q Consensus 92 ~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~---~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~ 168 (210)
....+..|++.+++.+....+ .+.++-++|..++.. ..........+|+.||.|++|.|+..||..+|...
T Consensus 20 ~t~f~~~ei~~~Yr~Fk~~cP------~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~ 93 (193)
T KOG0044|consen 20 QTKFSKKEIQQWYRGFKNECP------SGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT 93 (193)
T ss_pred hcCCCHHHHHHHHHHhcccCC------CCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Confidence 456788999999998765543 245667778777653 35566778899999999999999999999999876
Q ss_pred CCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhh
Q 028383 169 GMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSF 207 (210)
Q Consensus 169 g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~ 207 (210)
-. +..++-++..++.+|.|+||.|+++|++.++...+
T Consensus 94 ~r--Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~ 130 (193)
T KOG0044|consen 94 SR--GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIY 130 (193)
T ss_pred cC--CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHH
Confidence 53 37788899999999999999999999999987654
No 32
>PF14658 EF-hand_9: EF-hand domain
Probab=98.95 E-value=3.6e-09 Score=67.81 Aligned_cols=63 Identities=25% Similarity=0.458 Sum_probs=57.7
Q ss_pred HHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCC-CceeHHHHHHHHHhh
Q 028383 143 DAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGD-GRIDFKEFVKFMESS 206 (210)
Q Consensus 143 ~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~d-G~Is~~eF~~~~~~~ 206 (210)
.+|..||+++.|.|...++..+|+.++.+ ..++.+++.+.+++|+++. |.|+++.|+.+|+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~-~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGR-SPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCC-CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 47999999999999999999999999862 3789999999999999987 999999999999864
No 33
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.95 E-value=4.7e-09 Score=72.13 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=59.8
Q ss_pred hhHHHHHHHhHhhhcc-CCCCcccHHHHHHHHHh-cCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCC
Q 028383 74 QDFKLCSKQASCNEKK-HDDESLSRDQVETVMTN-LTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDEN 151 (210)
Q Consensus 74 ~~~~~~~~~F~~~D~~-d~~G~Is~~El~~~l~~-lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d 151 (210)
..+..++.+|..+| . +++|+|+.+||+.+|.. +|-..+ ..+.+..+++.+|.|
T Consensus 5 ~ai~~l~~~F~~fd-~~~~~g~i~~~ELk~ll~~elg~~ls------------------------~~~~v~~mi~~~D~d 59 (89)
T cd05022 5 KAIETLVSNFHKAS-VKGGKESLTASEFQELLTQQLPHLLK------------------------DVEGLEEKMKNLDVN 59 (89)
T ss_pred HHHHHHHHHHHHHh-CCCCCCeECHHHHHHHHHHHhhhhcc------------------------CHHHHHHHHHHhCCC
Confidence 44667889999999 8 99999999999999998 775443 116789999999999
Q ss_pred CCCcccHHHHHHHHHHh
Q 028383 152 KDGFIDALELQRVLCIL 168 (210)
Q Consensus 152 ~~G~Is~~El~~~l~~~ 168 (210)
++|.|+.+||..++..+
T Consensus 60 ~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 60 QDSKLSFEEFWELIGEL 76 (89)
T ss_pred CCCCCcHHHHHHHHHHH
Confidence 99999999999988764
No 34
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.95 E-value=4.6e-09 Score=77.11 Aligned_cols=69 Identities=30% Similarity=0.490 Sum_probs=59.0
Q ss_pred CCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHH----HHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 136 PSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENC----KKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 136 ~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~----~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
+..-++.-||+.+|-|++++|..++|...+..+... +++++++ +.++.++|.||||++++.||-.++.+
T Consensus 105 PrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~-eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 105 PRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRD-ELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred hHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 345567889999999999999999999999987643 4888876 56778899999999999999998865
No 35
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.91 E-value=2.1e-08 Score=78.50 Aligned_cols=99 Identities=12% Similarity=0.168 Sum_probs=81.0
Q ss_pred hhhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCC
Q 028383 72 KSQDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDEN 151 (210)
Q Consensus 72 ~~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d 151 (210)
+..-++.-+.+|..+| +|++|+|+..||+.+|..+|+..+ .+.+..+++.||..
T Consensus 119 Lw~~i~~Wr~vF~~~D-~D~SG~I~~sEL~~Al~~~Gy~Ls-------------------------pq~~~~lv~kyd~~ 172 (221)
T KOG0037|consen 119 LWKYINQWRNVFRTYD-RDRSGTIDSSELRQALTQLGYRLS-------------------------PQFYNLLVRKYDRF 172 (221)
T ss_pred HHHHHHHHHHHHHhcc-cCCCCcccHHHHHHHHHHcCcCCC-------------------------HHHHHHHHHHhccc
Confidence 3344455578999999 999999999999999999999887 45677788999988
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCc--eeHHHHHHHHH
Q 028383 152 KDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGR--IDFKEFVKFME 204 (210)
Q Consensus 152 ~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~--Is~~eF~~~~~ 204 (210)
++|.|..+++.+++..+. .+-+.+++.|.+.+|. |+|++|+.+..
T Consensus 173 ~~g~i~FD~FI~ccv~L~--------~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 173 GGGRIDFDDFIQCCVVLQ--------RLTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred cCCceeHHHHHHHHHHHH--------HHHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 899999999999987643 3456888899988884 78999988654
No 36
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=4e-09 Score=86.86 Aligned_cols=119 Identities=19% Similarity=0.259 Sum_probs=90.7
Q ss_pred HHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCc------ccchh----hccCCHHHHHHHHhccCC-----C--HHHHH
Q 028383 80 SKQASCNEKKHDDESLSRDQVETVMTNLTLFCSP------EGEEL----PQKLGSRELSRLFEEKEP-----S--LEEVK 142 (210)
Q Consensus 80 ~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~------~~~~l----~~~id~~EF~~~~~~~~~-----~--~~~l~ 142 (210)
.+.|+.-| .|++|.++++||...|..-..+... +.+++ .+.|+++||+.-+..... . ..+-.
T Consensus 166 e~rFk~AD-~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere 244 (325)
T KOG4223|consen 166 EERFKAAD-QDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTERE 244 (325)
T ss_pred HHHHhhcc-cCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHH
Confidence 47899999 9999999999999988643322211 12222 346899999986643211 1 11234
Q ss_pred HHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHH
Q 028383 143 DAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVK 201 (210)
Q Consensus 143 ~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~ 201 (210)
+.|...|+|++|+++.+|++.++...+.. ....++..|+.+.|.|+||++|++|-+.
T Consensus 245 ~F~~~~DknkDG~L~~dEl~~WI~P~~~d--~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 245 QFFEFRDKNKDGKLDGDELLDWILPSEQD--HAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHHhhcCCCCccCHHHHhcccCCCCcc--HHHHHHHHHhhhhccCccccccHHHHhh
Confidence 66788899999999999999998877655 7889999999999999999999999765
No 37
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.88 E-value=8.6e-09 Score=70.83 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=57.3
Q ss_pred HHHHHHhHhhcCC--CCCcccHHHHHHHHH-HhCCCCCCc----HHHHHHHHHhhCCCCCCceeHHHHHHHHHhhh
Q 028383 139 EEVKDAFDVFDEN--KDGFIDALELQRVLC-ILGMKEGFQ----LENCKKMIKTFDENGDGRIDFKEFVKFMESSF 207 (210)
Q Consensus 139 ~~l~~~F~~~D~d--~~G~Is~~El~~~l~-~~g~~~~ls----~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~ 207 (210)
..+...|+.|+.. ++|+|+.+||+.+|. .+|.. ++ +++++.++..+|.+++|.|+|+||+.++.+..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~--~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNF--LKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHh--hccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4577889999865 489999999999997 45543 55 89999999999999999999999999987654
No 38
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.86 E-value=2.2e-08 Score=68.75 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=59.4
Q ss_pred hhHHHHHHHhHhhhccCCCC-cccHHHHHHHHHh-----cCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHh
Q 028383 74 QDFKLCSKQASCNEKKHDDE-SLSRDQVETVMTN-----LTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDV 147 (210)
Q Consensus 74 ~~~~~~~~~F~~~D~~d~~G-~Is~~El~~~l~~-----lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~ 147 (210)
+.+..++++|..+|+.||+| .|+.+||+.+|+. +|..++ .+.+..+++.
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~-------------------------~~~v~~~i~~ 59 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKE-------------------------QEVVDKVMET 59 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCC-------------------------HHHHHHHHHH
Confidence 44567789999997358999 6999999999998 776554 6779999999
Q ss_pred hcCCCCCcccHHHHHHHHHHh
Q 028383 148 FDENKDGFIDALELQRVLCIL 168 (210)
Q Consensus 148 ~D~d~~G~Is~~El~~~l~~~ 168 (210)
+|+|++|.|+.+||..++..+
T Consensus 60 ~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 60 LDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred hCCCCCCcCcHHHHHHHHHHH
Confidence 999999999999999888654
No 39
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.84 E-value=1.6e-08 Score=65.28 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=54.4
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccH
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDA 158 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~ 158 (210)
|+++|..+| ++++|.|+.+|+..+++.+|. + .+.+..+|+.+|.+++|.|+.
T Consensus 1 ~~~~F~~~D-~~~~G~i~~~el~~~l~~~g~--~-------------------------~~~~~~i~~~~d~~~~g~i~~ 52 (67)
T cd00052 1 YDQIFRSLD-PDGDGLISGDEARPFLGKSGL--P-------------------------RSVLAQIWDLADTDKDGKLDK 52 (67)
T ss_pred ChHHHHHhC-CCCCCcCcHHHHHHHHHHcCC--C-------------------------HHHHHHHHHHhcCCCCCcCCH
Confidence 358899999 999999999999999998875 3 456889999999999999999
Q ss_pred HHHHHHHHHh
Q 028383 159 LELQRVLCIL 168 (210)
Q Consensus 159 ~El~~~l~~~ 168 (210)
+|+..++..+
T Consensus 53 ~ef~~~~~~~ 62 (67)
T cd00052 53 EEFAIAMHLI 62 (67)
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 40
>PTZ00183 centrin; Provisional
Probab=98.84 E-value=2.2e-08 Score=75.46 Aligned_cols=106 Identities=24% Similarity=0.342 Sum_probs=79.2
Q ss_pred ccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhcc--CCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCC
Q 028383 95 LSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEK--EPSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKE 172 (210)
Q Consensus 95 Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~--~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~ 172 (210)
++..+...+......- ...-.+.|+..||..++... ......+..+|..+|.+++|.|+..|+..++..... .
T Consensus 11 ~~~~~~~~~~~~F~~~----D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~-~ 85 (158)
T PTZ00183 11 LTEDQKKEIREAFDLF----DTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLG-E 85 (158)
T ss_pred CCHHHHHHHHHHHHHh----CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhc-C
Confidence 4555666554443221 11224678999998877642 356778999999999999999999999998775421 2
Q ss_pred CCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 173 GFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 173 ~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
....+.++.+++.+|.+++|.|+.+||..++..
T Consensus 86 ~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 86 RDPREEILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 256788999999999999999999999998875
No 41
>PTZ00184 calmodulin; Provisional
Probab=98.83 E-value=2.3e-08 Score=74.39 Aligned_cols=106 Identities=23% Similarity=0.382 Sum_probs=78.2
Q ss_pred ccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhc--cCCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCC
Q 028383 95 LSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEE--KEPSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKE 172 (210)
Q Consensus 95 Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~--~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~ 172 (210)
++.++...+...+... ...-.+.|++.||..++.. .....+.+..+|+.+|.+++|.|+.+++..++......
T Consensus 5 ~~~~~~~~~~~~F~~~----D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~- 79 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLF----DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD- 79 (149)
T ss_pred cCHHHHHHHHHHHHHH----cCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC-
Confidence 4556666555444321 2233567899999887653 23456788999999999999999999999988764221
Q ss_pred CCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 173 GFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 173 ~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
....+.+..+++.+|.+++|.|+.++|..++..
T Consensus 80 ~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 80 TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 245677889999999999999999999988865
No 42
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=1.6e-08 Score=75.39 Aligned_cols=65 Identities=34% Similarity=0.637 Sum_probs=35.0
Q ss_pred HHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 139 EEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 139 ~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
.+++.+|..||++++|+|+.+||+-+++.+|.. ...+++..++..+|.++.|.|+|++|+..|..
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE--~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFE--PKKEEILKLLADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCC--cchHHHHHHHHhhhhccCceechHHHHHHHHH
Confidence 345555555555555555555555555555544 44555555555555555555555555555443
No 43
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.1e-08 Score=84.28 Aligned_cols=127 Identities=15% Similarity=0.148 Sum_probs=94.4
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCC---------cccchhhccCCHHHHHHHHhcc---------CCC---
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTNLTLFCS---------PEGEELPQKLGSRELSRLFEEK---------EPS--- 137 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~---------~~~~~l~~~id~~EF~~~~~~~---------~~~--- 137 (210)
+..++..+| .+++|.|+..|+..++...-.... .....-.+.|+|+|+...+... ...
T Consensus 79 l~~l~~~iD-~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~ 157 (325)
T KOG4223|consen 79 LGKLVPKID-SDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEE 157 (325)
T ss_pred HHHHHhhhc-CCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHH
Confidence 457888999 999999999999998754321110 0022234558899987765421 000
Q ss_pred ----HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhh
Q 028383 138 ----LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSF 207 (210)
Q Consensus 138 ----~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~ 207 (210)
...-+.-|+.-|.|++|.++.+||..+|..-.. +.+.+-.+.+-+...|.|+||.|+++||+.-|.+..
T Consensus 158 ~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~-p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 158 YKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEH-PHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhc-chHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 123456799999999999999999999986554 357788889999999999999999999998887654
No 44
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.82 E-value=3.8e-08 Score=68.32 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=59.4
Q ss_pred hhhHHHHHHHhHhhhccCCCC-cccHHHHHHHHHh-cCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcC
Q 028383 73 SQDFKLCSKQASCNEKKHDDE-SLSRDQVETVMTN-LTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDE 150 (210)
Q Consensus 73 ~~~~~~~~~~F~~~D~~d~~G-~Is~~El~~~l~~-lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~ 150 (210)
...+..++++|..+|+.||+| +||.+||+.++.. ++-... ...+...+..+++.+|.
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~---------------------~~~~~~~v~~i~~elD~ 64 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLS---------------------SQKDPMLVDKIMNDLDS 64 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcc---------------------cccCHHHHHHHHHHhCC
Confidence 344667889999999778998 5999999999976 332111 01135679999999999
Q ss_pred CCCCcccHHHHHHHHHHhC
Q 028383 151 NKDGFIDALELQRVLCILG 169 (210)
Q Consensus 151 d~~G~Is~~El~~~l~~~g 169 (210)
|++|.|+.+||..++..+.
T Consensus 65 n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 65 NKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987653
No 45
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.80 E-value=3.1e-08 Score=68.85 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=57.6
Q ss_pred HHHHHHHhHhhhcc-CC-CCcccHHHHHHHHHh-----cCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhh
Q 028383 76 FKLCSKQASCNEKK-HD-DESLSRDQVETVMTN-----LTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVF 148 (210)
Q Consensus 76 ~~~~~~~F~~~D~~-d~-~G~Is~~El~~~l~~-----lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~ 148 (210)
+..++.+|..+| . |+ +|.|+.+||+.+|+. +|..++ .+.+..+++.+
T Consensus 7 ~~~l~~~F~~~D-~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s-------------------------~~ei~~~~~~~ 60 (94)
T cd05031 7 MESLILTFHRYA-GKDGDKNTLSRKELKKLMEKELSEFLKNQKD-------------------------PMAVDKIMKDL 60 (94)
T ss_pred HHHHHHHHHHHh-ccCCCCCeECHHHHHHHHHHHhHHHhhcccc-------------------------HHHHHHHHHHh
Confidence 556779999999 7 87 699999999999986 344443 56789999999
Q ss_pred cCCCCCcccHHHHHHHHHHhC
Q 028383 149 DENKDGFIDALELQRVLCILG 169 (210)
Q Consensus 149 D~d~~G~Is~~El~~~l~~~g 169 (210)
|.+++|.|+.+||..++...+
T Consensus 61 D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 61 DQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred CCCCCCcCcHHHHHHHHHHHH
Confidence 999999999999999988765
No 46
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.75 E-value=7.2e-08 Score=67.24 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=58.2
Q ss_pred hhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCC
Q 028383 74 QDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKD 153 (210)
Q Consensus 74 ~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~ 153 (210)
.+.+.++++|..+| .+++|.|+.+|++.+++..|. + .+.+..+|+.+|.+++
T Consensus 7 ~~~~~l~~~F~~~D-~d~~G~Is~~el~~~l~~~~~--~-------------------------~~ev~~i~~~~d~~~~ 58 (96)
T smart00027 7 EDKAKYEQIFRSLD-KNQDGTVTGAQAKPILLKSGL--P-------------------------QTLLAKIWNLADIDND 58 (96)
T ss_pred HHHHHHHHHHHHhC-CCCCCeEeHHHHHHHHHHcCC--C-------------------------HHHHHHHHHHhcCCCC
Confidence 34567889999999 999999999999999998763 2 4568899999999999
Q ss_pred CcccHHHHHHHHHHh
Q 028383 154 GFIDALELQRVLCIL 168 (210)
Q Consensus 154 G~Is~~El~~~l~~~ 168 (210)
|.|+.+||..++..+
T Consensus 59 g~I~~~eF~~~~~~~ 73 (96)
T smart00027 59 GELDKDEFALAMHLI 73 (96)
T ss_pred CCcCHHHHHHHHHHH
Confidence 999999999988753
No 47
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.73 E-value=1e-07 Score=65.97 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=58.5
Q ss_pred hhHHHHHHHhHhhhccCCCC-cccHHHHHHHHHh-cCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCC
Q 028383 74 QDFKLCSKQASCNEKKHDDE-SLSRDQVETVMTN-LTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDEN 151 (210)
Q Consensus 74 ~~~~~~~~~F~~~D~~d~~G-~Is~~El~~~l~~-lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d 151 (210)
+..+.++++|..+|+.+++| .|+..||+.+|+. +|...+ ...+.+.+..+|+.+|+|
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~---------------------~~~s~~~v~~i~~~~D~d 64 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLD---------------------AQKDADAVDKIMKELDEN 64 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHcc---------------------CCCCHHHHHHHHHHHCCC
Confidence 34566789999994399999 5999999999985 553211 012367799999999999
Q ss_pred CCCcccHHHHHHHHHHh
Q 028383 152 KDGFIDALELQRVLCIL 168 (210)
Q Consensus 152 ~~G~Is~~El~~~l~~~ 168 (210)
++|.|+.+||..++..+
T Consensus 65 ~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 65 GDGEVDFQEFVVLVAAL 81 (92)
T ss_pred CCCcCcHHHHHHHHHHH
Confidence 99999999999988764
No 48
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.72 E-value=1.1e-07 Score=65.14 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=59.4
Q ss_pred hhHHHHHHHhHhhhcc--CCCCcccHHHHHHHHHh-cCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcC
Q 028383 74 QDFKLCSKQASCNEKK--HDDESLSRDQVETVMTN-LTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDE 150 (210)
Q Consensus 74 ~~~~~~~~~F~~~D~~--d~~G~Is~~El~~~l~~-lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~ 150 (210)
++++.++++|..+| . +++|.|+.+||..+++. +|..++ ...+...+..+++.+|.
T Consensus 5 ~~~~~l~~~F~~~D-~~~~~~G~Is~~el~~~l~~~~g~~~~---------------------~~~~~~ei~~i~~~~d~ 62 (88)
T cd00213 5 KAIETIIDVFHKYS-GKEGDKDTLSKKELKELLETELPNFLK---------------------NQKDPEAVDKIMKDLDV 62 (88)
T ss_pred HHHHHHHHHHHHHh-hccCCCCcCcHHHHHHHHHHHhhhhcc---------------------CCCCHHHHHHHHHHhcc
Confidence 45667889999999 8 89999999999999976 554332 01235678999999999
Q ss_pred CCCCcccHHHHHHHHHHh
Q 028383 151 NKDGFIDALELQRVLCIL 168 (210)
Q Consensus 151 d~~G~Is~~El~~~l~~~ 168 (210)
+++|.|+.++|..++...
T Consensus 63 ~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 63 NKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred CCCCcCcHHHHHHHHHHH
Confidence 999999999999988754
No 49
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.71 E-value=5.8e-08 Score=74.99 Aligned_cols=67 Identities=36% Similarity=0.682 Sum_probs=61.0
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~ 206 (210)
...+..+|+.||.+.||+|+..||+.+|..+|.+ -|.=-++.+++++|.|.||+|+|-||+-+++..
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap--QTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAP--QTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCc--hhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 4568899999999999999999999999999977 677778999999999999999999999888754
No 50
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.67 E-value=1.5e-07 Score=58.83 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=53.9
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccH
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDA 158 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~ 158 (210)
++.+|..+| .+++|.|+.+|+..+++.++...+ .+.+..+|+.+|.+++|.|+.
T Consensus 2 ~~~~f~~~d-~~~~g~l~~~e~~~~l~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~l~~ 55 (63)
T cd00051 2 LREAFRLFD-KDGDGTISADELKAALKSLGEGLS-------------------------EEEIDEMIREVDKDGDGKIDF 55 (63)
T ss_pred HHHHHHHhC-CCCCCcCcHHHHHHHHHHhCCCCC-------------------------HHHHHHHHHHhCCCCCCeEeH
Confidence 357899999 999999999999999999886655 567888999999999999999
Q ss_pred HHHHHHH
Q 028383 159 LELQRVL 165 (210)
Q Consensus 159 ~El~~~l 165 (210)
+++..++
T Consensus 56 ~ef~~~~ 62 (63)
T cd00051 56 EEFLELM 62 (63)
T ss_pred HHHHHHh
Confidence 9998765
No 51
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.66 E-value=1.2e-07 Score=58.82 Aligned_cols=52 Identities=27% Similarity=0.440 Sum_probs=46.7
Q ss_pred CCCcccHHHHHHHHHhcCCC-CCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHH
Q 028383 91 DDESLSRDQVETVMTNLTLF-CSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDALELQRVLCI 167 (210)
Q Consensus 91 ~~G~Is~~El~~~l~~lg~~-~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~ 167 (210)
.+|.|+.++|+.+|..+|.. ++ .+.+..+|..+|.|++|+|+.+||..++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s-------------------------~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLS-------------------------EEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSC-------------------------HHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCC-------------------------HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999888887 66 677999999999999999999999998864
No 52
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.64 E-value=3.2e-07 Score=62.98 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=57.3
Q ss_pred hHHHHHHHhHhhhccCC-CCcccHHHHHHHHHh---cCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcC
Q 028383 75 DFKLCSKQASCNEKKHD-DESLSRDQVETVMTN---LTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDE 150 (210)
Q Consensus 75 ~~~~~~~~F~~~D~~d~-~G~Is~~El~~~l~~---lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~ 150 (210)
.+..+-++|.++|+.|| +|+|+.+||+.+++. +|..++ .+.+..+++.+|.
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t-------------------------~~ev~~m~~~~D~ 62 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQ-------------------------DAEIAKLMEDLDR 62 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCC-------------------------HHHHHHHHHHhcC
Confidence 34556689999994377 899999999999963 565554 6788999999999
Q ss_pred CCCCcccHHHHHHHHHHh
Q 028383 151 NKDGFIDALELQRVLCIL 168 (210)
Q Consensus 151 d~~G~Is~~El~~~l~~~ 168 (210)
|++|.|+.+||..++..+
T Consensus 63 d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 63 NKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CCCCCCcHHHHHHHHHHH
Confidence 999999999999888764
No 53
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.59 E-value=7.8e-07 Score=85.26 Aligned_cols=120 Identities=19% Similarity=0.260 Sum_probs=89.4
Q ss_pred hhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCc--------ccchhhc--------cCCHHHHHHHHhcc--
Q 028383 73 SQDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSP--------EGEELPQ--------KLGSRELSRLFEEK-- 134 (210)
Q Consensus 73 ~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~--------~~~~l~~--------~id~~EF~~~~~~~-- 134 (210)
..++.+|.-+|+.|| .+.+|.++.++|+.+|+++|++.+. +.+++.. .|+..+|+++|..+
T Consensus 2249 Ee~L~EFs~~fkhFD-kek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFD-KEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred HHHHHHHHHHHHHhc-hhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccc
Confidence 355778889999999 9999999999999999999988642 2334433 35688898887643
Q ss_pred --CCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHh----hCCC----CCCceeHHHHHHHH
Q 028383 135 --EPSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKT----FDEN----GDGRIDFKEFVKFM 203 (210)
Q Consensus 135 --~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~----~D~~----~dG~Is~~eF~~~~ 203 (210)
..+.+.+..||+.+|. +.-||+..++... +|.++++-.+.. +++. -.+.++|.+|++-+
T Consensus 2328 eNI~s~~eIE~AfraL~a-~~~yvtke~~~~~---------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2328 ENILSSEEIEDAFRALDA-GKPYVTKEELYQN---------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred ccccchHHHHHHHHHhhc-CCccccHHHHHhc---------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 4456789999999998 7889999988763 566666655544 3442 23468899988754
No 54
>PLN02964 phosphatidylserine decarboxylase
Probab=98.56 E-value=3.8e-07 Score=82.97 Aligned_cols=78 Identities=18% Similarity=0.308 Sum_probs=65.1
Q ss_pred HHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCccc
Q 028383 78 LCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFID 157 (210)
Q Consensus 78 ~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is 157 (210)
.++++|..+| .|++|.|+.+||..++..++...+ .++++.+|+.+|+|++|+|+
T Consensus 180 fi~~mf~~~D-~DgdG~IdfdEFl~lL~~lg~~~s-------------------------eEEL~eaFk~fDkDgdG~Is 233 (644)
T PLN02964 180 FARRILAIVD-YDEDGQLSFSEFSDLIKAFGNLVA-------------------------ANKKEELFKAADLNGDGVVT 233 (644)
T ss_pred HHHHHHHHhC-CCCCCeEcHHHHHHHHHHhccCCC-------------------------HHHHHHHHHHhCCCCCCcCC
Confidence 3568999999 999999999999999988764333 67899999999999999999
Q ss_pred HHHHHHHHHH-------------hCCCCCCcH-HHHHHHH
Q 028383 158 ALELQRVLCI-------------LGMKEGFQL-ENCKKMI 183 (210)
Q Consensus 158 ~~El~~~l~~-------------~g~~~~ls~-~~~~~l~ 183 (210)
.+||+.+|.. +|.+ ++. ++++.|+
T Consensus 234 ~dEL~~vL~~~~~~~~~~~~cp~cg~~--l~~~~~~~~ii 271 (644)
T PLN02964 234 IDELAALLALQQEQEPIINNCPVCGEA--LGVSDKLNAMI 271 (644)
T ss_pred HHHHHHHHHhcccCcchhhhchhhcCc--ccchhhHHHHH
Confidence 9999999998 5644 544 5566665
No 55
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.55 E-value=4.6e-07 Score=67.27 Aligned_cols=66 Identities=33% Similarity=0.590 Sum_probs=58.5
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhhhc
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSFVE 209 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~~e 209 (210)
..++++||..+|.|+||.|..++|+..+..+|.. .++++++.|+++. .|-|+|.-|+.++-..+..
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~--~~d~elDaM~~Ea----~gPINft~FLTmfGekL~g 96 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI--ASDEELDAMMKEA----PGPINFTVFLTMFGEKLNG 96 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC--CCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcC
Confidence 5679999999999999999999999999999976 8999999999875 5789999999988776643
No 56
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.52 E-value=4.5e-07 Score=65.36 Aligned_cols=60 Identities=20% Similarity=0.133 Sum_probs=50.2
Q ss_pred HHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCc
Q 028383 76 FKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGF 155 (210)
Q Consensus 76 ~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~ 155 (210)
...+.-.|..+| .|+||.|+.+||..+. ++ +. ...+...|..+|.|++|.
T Consensus 47 ~~~l~w~F~~lD-~d~DG~Ls~~EL~~~~--l~--~~-------------------------e~~~~~f~~~~D~n~Dg~ 96 (116)
T cd00252 47 KDPVGWMFNQLD-GNYDGKLSHHELAPIR--LD--PN-------------------------EHCIKPFFESCDLDKDGS 96 (116)
T ss_pred HHHHHHHHHHHC-CCCCCcCCHHHHHHHH--cc--ch-------------------------HHHHHHHHHHHCCCCCCC
Confidence 345668999999 9999999999999765 22 21 455778999999999999
Q ss_pred ccHHHHHHHH
Q 028383 156 IDALELQRVL 165 (210)
Q Consensus 156 Is~~El~~~l 165 (210)
||.+|+...+
T Consensus 97 IS~~Ef~~cl 106 (116)
T cd00252 97 ISLDEWCYCF 106 (116)
T ss_pred CCHHHHHHHH
Confidence 9999999998
No 57
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.51 E-value=1.6e-07 Score=50.68 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=15.9
Q ss_pred HHHHhHhhcCCCCCcccHHHHHHHHHH
Q 028383 141 VKDAFDVFDENKDGFIDALELQRVLCI 167 (210)
Q Consensus 141 l~~~F~~~D~d~~G~Is~~El~~~l~~ 167 (210)
++.+|+.+|+|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455666666666666666666665543
No 58
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.43 E-value=1.9e-06 Score=59.09 Aligned_cols=64 Identities=20% Similarity=0.433 Sum_probs=53.3
Q ss_pred HHHHHHhHhhcCCCCCcccHHHHHHHHHH-----hCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 139 EEVKDAFDVFDENKDGFIDALELQRVLCI-----LGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 139 ~~l~~~F~~~D~d~~G~Is~~El~~~l~~-----~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
..+..+|..|- .+.|.++..||+.+|.. ++. .-.++.++.+++.+|.|+||.|+|.||+.++..
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~--~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKN--QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcC--CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 45778899997 44579999999999975 222 256889999999999999999999999998864
No 59
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.42 E-value=3.4e-07 Score=49.37 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=26.1
Q ss_pred HHHHHhHhhhccCCCCcccHHHHHHHHHhc
Q 028383 78 LCSKQASCNEKKHDDESLSRDQVETVMTNL 107 (210)
Q Consensus 78 ~~~~~F~~~D~~d~~G~Is~~El~~~l~~l 107 (210)
+++++|+.+| +|+||+|+.+||..++++|
T Consensus 1 E~~~~F~~~D-~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFD-KDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHS-TTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHC-CCCCCcCCHHHHHHHHHhC
Confidence 3568999999 9999999999999999864
No 60
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.37 E-value=3.5e-06 Score=57.91 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=56.4
Q ss_pred hhHHHHHHHhHh-hhccCCCC-cccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCC
Q 028383 74 QDFKLCSKQASC-NEKKHDDE-SLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDEN 151 (210)
Q Consensus 74 ~~~~~~~~~F~~-~D~~d~~G-~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d 151 (210)
..+..+..+|.. .| .+|+| .|+.+||+.++..-..+.. . .......+..+++.+|.|
T Consensus 6 ~~i~~l~~~F~~y~~-~dg~~~~Ls~~Elk~ll~~e~~~~~-------------------~-~~~~~~~~~~ll~~~D~d 64 (89)
T cd05023 6 RCIESLIAVFQKYAG-KDGDSYQLSKTEFLSFMNTELASFT-------------------K-NQKDPGVLDRMMKKLDLN 64 (89)
T ss_pred HHHHHHHHHHHHHhc-cCCCcCeECHHHHHHHHHHhhhHhh-------------------c-CCCCHHHHHHHHHHcCCC
Confidence 345566789999 66 88876 9999999999976432111 0 112356789999999999
Q ss_pred CCCcccHHHHHHHHHHh
Q 028383 152 KDGFIDALELQRVLCIL 168 (210)
Q Consensus 152 ~~G~Is~~El~~~l~~~ 168 (210)
++|.|+.+||..++..+
T Consensus 65 ~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 65 SDGQLDFQEFLNLIGGL 81 (89)
T ss_pred CCCcCcHHHHHHHHHHH
Confidence 99999999999988765
No 61
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.36 E-value=6e-07 Score=49.19 Aligned_cols=30 Identities=47% Similarity=0.857 Sum_probs=25.7
Q ss_pred HHHHHhHhhcCCCCCcccHHHHHHHHH-HhC
Q 028383 140 EVKDAFDVFDENKDGFIDALELQRVLC-ILG 169 (210)
Q Consensus 140 ~l~~~F~~~D~d~~G~Is~~El~~~l~-~~g 169 (210)
+++.+|+.+|+|++|+|+.+||+.+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 378899999999999999999999998 565
No 62
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.30 E-value=4.4e-06 Score=59.00 Aligned_cols=62 Identities=23% Similarity=0.393 Sum_probs=55.6
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFME 204 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~ 204 (210)
......+|...|. ++|.|+.++.+.++...| ++.+.+..++...|.+++|+++++||+-+|.
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~----L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG----LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT----SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC----CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 5678899999985 689999999999999987 7889999999999999999999999998875
No 63
>PF14658 EF-hand_9: EF-hand domain
Probab=98.30 E-value=3.2e-06 Score=54.29 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=54.8
Q ss_pred HHhHhhhccCCCCcccHHHHHHHHHhcCC-CCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCC-CcccH
Q 028383 81 KQASCNEKKHDDESLSRDQVETVMTNLTL-FCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKD-GFIDA 158 (210)
Q Consensus 81 ~~F~~~D~~d~~G~Is~~El~~~l~~lg~-~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~-G~Is~ 158 (210)
.+|..+| .++.|.|...++...|+.++. .|+ +..|..+-+.+|++|. |.|+.
T Consensus 2 ~~F~~fD-~~~tG~V~v~~l~~~Lra~~~~~p~-------------------------e~~Lq~l~~elDP~g~~~~v~~ 55 (66)
T PF14658_consen 2 TAFDAFD-TQKTGRVPVSDLITYLRAVTGRSPE-------------------------ESELQDLINELDPEGRDGSVNF 55 (66)
T ss_pred cchhhcC-CcCCceEeHHHHHHHHHHHcCCCCc-------------------------HHHHHHHHHHhCCCCCCceEeH
Confidence 3688999 999999999999999999988 554 6678999999999998 99999
Q ss_pred HHHHHHHHH
Q 028383 159 LELQRVLCI 167 (210)
Q Consensus 159 ~El~~~l~~ 167 (210)
+.|..+|+.
T Consensus 56 d~F~~iM~~ 64 (66)
T PF14658_consen 56 DTFLAIMRD 64 (66)
T ss_pred HHHHHHHHH
Confidence 999999874
No 64
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.24 E-value=1.6e-06 Score=47.42 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=26.1
Q ss_pred HHHHHhHhhhccCCCCcccHHHHHHHHH-hcC
Q 028383 78 LCSKQASCNEKKHDDESLSRDQVETVMT-NLT 108 (210)
Q Consensus 78 ~~~~~F~~~D~~d~~G~Is~~El~~~l~-~lg 108 (210)
+++++|..+| .|++|.|+.+||..+|+ ++|
T Consensus 1 ~l~~~F~~~D-~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFD-KDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH--TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHC-CCCCCcCcHHHHHHHHHHhcC
Confidence 3578999999 99999999999999999 676
No 65
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.24 E-value=5.8e-06 Score=70.90 Aligned_cols=122 Identities=18% Similarity=0.275 Sum_probs=82.5
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHh------cCCC----CCc------c----------cchhhccCCHHHHHHHHh
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTN------LTLF----CSP------E----------GEELPQKLGSRELSRLFE 132 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~------lg~~----~~~------~----------~~~l~~~id~~EF~~~~~ 132 (210)
|+-+|..|| .||||.|+.+||..+..- +|.. ++. + -....+.++++||+..+.
T Consensus 235 F~IAFKMFD-~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 235 FRIAFKMFD-LDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred ceeeeeeee-cCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 447899999 999999999999887532 1210 000 0 011123467889988876
Q ss_pred ccCCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028383 133 EKEPSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQ-LENCKKMIKTFDENGDGRIDFKEFVKFME 204 (210)
Q Consensus 133 ~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls-~~~~~~l~~~~D~~~dG~Is~~eF~~~~~ 204 (210)
. ...+-++.-|..+|+..+|.|+..+|..+|-....-.... ...+..+-++++.+ +-.||++||..+..
T Consensus 314 ~--Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 314 N--LQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred H--HHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 4 2356677789999999999999999999987654211111 22456667777665 34599999988753
No 66
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.20 E-value=1.7e-05 Score=61.57 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=75.8
Q ss_pred hhhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCC
Q 028383 72 KSQDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDEN 151 (210)
Q Consensus 72 ~~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d 151 (210)
.+.+++.+...|..+| .+.||+|+..||+..|.+||.+.+ .-.++.+-+..|.|
T Consensus 94 srkqIk~~~~~Fk~yD-e~rDgfIdl~ELK~mmEKLgapQT-------------------------HL~lK~mikeVded 147 (244)
T KOG0041|consen 94 SRKQIKDAESMFKQYD-EDRDGFIDLMELKRMMEKLGAPQT-------------------------HLGLKNMIKEVDED 147 (244)
T ss_pred HHHHHHHHHHHHHHhc-ccccccccHHHHHHHHHHhCCchh-------------------------hHHHHHHHHHhhcc
Confidence 4566888899999999 999999999999999999998765 45688888999999
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHh--hCCCCCCceeHHHH
Q 028383 152 KDGFIDALELQRVLCILGMKEGFQLENCKKMIKT--FDENGDGRIDFKEF 199 (210)
Q Consensus 152 ~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~--~D~~~dG~Is~~eF 199 (210)
.+|+||..|+.-+++...-..--.+.....+.+. +|...-|.---..|
T Consensus 148 ~dgklSfreflLIfrkaaagEL~~ds~~~~LAr~~eVDVskeGV~GAknF 197 (244)
T KOG0041|consen 148 FDGKLSFREFLLIFRKAAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNF 197 (244)
T ss_pred cccchhHHHHHHHHHHHhccccccchHHHHHHHhcccchhhhhhhhHHHH
Confidence 9999999998888876422111223444444444 66666665443333
No 67
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.17 E-value=7.6e-06 Score=70.79 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=51.2
Q ss_pred CCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhhh
Q 028383 135 EPSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSFV 208 (210)
Q Consensus 135 ~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~~ 208 (210)
......++.+|+.+|.|++|.|+.+|+.. ++.+|..+|.|+||.|+++||...+...++
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG---------------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 44567789999999999999999999842 467899999999999999999999987654
No 68
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.17 E-value=2.3e-05 Score=67.73 Aligned_cols=118 Identities=8% Similarity=0.091 Sum_probs=83.1
Q ss_pred hHhhhccCCCCcccHHHHHHHHHhcCCC----------CCcccchhhccCCHHHHHHHHh--ccCCCHHHHHHHhHhhcC
Q 028383 83 ASCNEKKHDDESLSRDQVETVMTNLTLF----------CSPEGEELPQKLGSRELSRLFE--EKEPSLEEVKDAFDVFDE 150 (210)
Q Consensus 83 F~~~D~~d~~G~Is~~El~~~l~~lg~~----------~~~~~~~l~~~id~~EF~~~~~--~~~~~~~~l~~~F~~~D~ 150 (210)
|-.+| +|+||.|+.++|...-...+-. +........+.+||++|+-++- +...+...++-.|+.+|.
T Consensus 284 FweLD-~Dhd~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDl 362 (493)
T KOG2562|consen 284 FWELD-TDHDGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDL 362 (493)
T ss_pred Hhhhc-cccccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeec
Confidence 88899 9999999999997642211100 0011223345589999987653 334455678999999999
Q ss_pred CCCCcccHHHHHHHHHH-------hCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHH
Q 028383 151 NKDGFIDALELQRVLCI-------LGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVK 201 (210)
Q Consensus 151 d~~G~Is~~El~~~l~~-------~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~ 201 (210)
+++|.|+..|++-+... .|...-.=++.+.+++..+.+...|+|+.++|+.
T Consensus 363 d~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 363 DGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred cCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 99999999998877654 2332212255567888888878889999999976
No 69
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.15 E-value=8.3e-06 Score=69.95 Aligned_cols=123 Identities=18% Similarity=0.289 Sum_probs=86.7
Q ss_pred HHhHhhhccCCCCcccHHHHHHHHHhcC-CCCCcc---cchh-------hccCCHHHHHHHHhccCCCHHHHHHHhHhhc
Q 028383 81 KQASCNEKKHDDESLSRDQVETVMTNLT-LFCSPE---GEEL-------PQKLGSRELSRLFEEKEPSLEEVKDAFDVFD 149 (210)
Q Consensus 81 ~~F~~~D~~d~~G~Is~~El~~~l~~lg-~~~~~~---~~~l-------~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D 149 (210)
--|..+| ...+|.|+..+|..+|-... .+.... ..++ ..-|+++||.+...-.. ..+....|...|-
T Consensus 322 lEF~~~~-~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~Ef~~Ff~Fl~-~l~dfd~Al~fy~ 399 (489)
T KOG2643|consen 322 LEFERFD-KGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQEFKAFFRFLN-NLNDFDIALRFYH 399 (489)
T ss_pred HHHHHhC-cccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 4577888 88889999999988875543 222211 1111 23488888887654210 1233444444442
Q ss_pred CCCCCcccHHHHHHHHHHh-CCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhhh
Q 028383 150 ENKDGFIDALELQRVLCIL-GMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSFV 208 (210)
Q Consensus 150 ~d~~G~Is~~El~~~l~~~-g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~~ 208 (210)
...+.|+..+++++.... |.+ +++..++-+|.-+|.|+||.++++||+.+|++.+.
T Consensus 400 -~Ag~~i~~~~f~raa~~vtGve--LSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmh 456 (489)
T KOG2643|consen 400 -MAGASIDEKTFQRAAKVVTGVE--LSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMH 456 (489)
T ss_pred -HcCCCCCHHHHHHHHHHhcCcc--cccceeeeEEEEEccCCCCcccHHHHHHHHHHHhh
Confidence 345889999999998864 655 99889999999999999999999999999988754
No 70
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.13 E-value=1e-05 Score=68.95 Aligned_cols=68 Identities=26% Similarity=0.470 Sum_probs=60.1
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~ 206 (210)
...++..|+.+|.+++|.++..++.+.+..+..+ +...+-+..++..+|.|.||.++|+||.+++...
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~-~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~ 80 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHP-KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK 80 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCC-CCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh
Confidence 4568899999999999999999999999998876 4667778899999999999999999999998754
No 71
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.11 E-value=1.1e-05 Score=59.00 Aligned_cols=69 Identities=29% Similarity=0.431 Sum_probs=58.2
Q ss_pred CCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCC--CCCceeHHHHHHHHHhh
Q 028383 136 PSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDEN--GDGRIDFKEFVKFMESS 206 (210)
Q Consensus 136 ~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~--~dG~Is~~eF~~~~~~~ 206 (210)
+...+++.+|..||..++|+|+......+|+.+|.. .|+.++...+...+.+ +--+|+|++|+-++...
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~n--PT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~v 78 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQN--PTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQV 78 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCC--CcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHH
Confidence 446789999999999999999999999999999976 7888998888887766 33578888888777543
No 72
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.09 E-value=2.1e-05 Score=53.90 Aligned_cols=72 Identities=15% Similarity=0.245 Sum_probs=55.3
Q ss_pred hHHHHHHHhHhhhccC--CCCcccHHHHHHHHHh-cCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCC
Q 028383 75 DFKLCSKQASCNEKKH--DDESLSRDQVETVMTN-LTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDEN 151 (210)
Q Consensus 75 ~~~~~~~~F~~~D~~d--~~G~Is~~El~~~l~~-lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d 151 (210)
.+..+...|..++ .. ++|.|+.+||+.++.. +|..++ .....+.+..+|+.+|.|
T Consensus 6 ~i~~~~~~f~~y~-~~~~~~~~Is~~El~~ll~~~~g~~~t---------------------~~~~~~~v~~i~~~~D~d 63 (88)
T cd05030 6 AIETIINVFHQYS-VRKGHPDTLYKKEFKQLVEKELPNFLK---------------------KEKNQKAIDKIFEDLDTN 63 (88)
T ss_pred HHHHHHHHHHHHh-ccCCCcccCCHHHHHHHHHHHhhHhhc---------------------cCCCHHHHHHHHHHcCCC
Confidence 3555668899998 44 4799999999999963 432221 112367799999999999
Q ss_pred CCCcccHHHHHHHHHHh
Q 028383 152 KDGFIDALELQRVLCIL 168 (210)
Q Consensus 152 ~~G~Is~~El~~~l~~~ 168 (210)
++|.|+.+||..++..+
T Consensus 64 ~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 64 QDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CCCcCcHHHHHHHHHHH
Confidence 99999999999988764
No 73
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.04 E-value=6e-06 Score=42.88 Aligned_cols=24 Identities=50% Similarity=0.742 Sum_probs=16.3
Q ss_pred HHHHhHhhcCCCCCcccHHHHHHH
Q 028383 141 VKDAFDVFDENKDGFIDALELQRV 164 (210)
Q Consensus 141 l~~~F~~~D~d~~G~Is~~El~~~ 164 (210)
++.+|+.+|.|++|.|+.+|+.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 355677777777777777777664
No 74
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.04 E-value=2.2e-05 Score=47.64 Aligned_cols=49 Identities=18% Similarity=0.436 Sum_probs=40.7
Q ss_pred cccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 155 FIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 155 ~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
+++..|++.+|+.++.. ++++.+..+|+.+|.+++|.+.-+||..+++.
T Consensus 1 kmsf~Evk~lLk~~NI~--~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIE--MDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccC--cCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 36889999999999977 99999999999999999999999999998764
No 75
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.02 E-value=6.5e-05 Score=58.62 Aligned_cols=111 Identities=20% Similarity=0.256 Sum_probs=82.3
Q ss_pred CcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCc-ccHHHHHHHHHHhCCC
Q 028383 93 ESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGF-IDALELQRVLCILGMK 171 (210)
Q Consensus 93 G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~-Is~~El~~~l~~~g~~ 171 (210)
+..|..|+..++......... . -.+.++.+||..+..-... --...+++.+|.+++|. |+.+++.+++.....+
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~-~--~~g~lt~eef~~i~~~~~N--p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~ 99 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRN-N--GDGYLTKEEFLSIPELALN--PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPK 99 (187)
T ss_pred cccCHHHHHHHHHHHHHhccc-c--ccCccCHHHHHHHHHHhcC--cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCC
Confidence 347888887776543211110 1 4567899999887643222 23578899999999999 9999999999887643
Q ss_pred CCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhhhc
Q 028383 172 EGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSFVE 209 (210)
Q Consensus 172 ~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~~e 209 (210)
....+.++-.++.+|.+++|.|+.+|+..++...+.+
T Consensus 100 -~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~ 136 (187)
T KOG0034|consen 100 -ASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGE 136 (187)
T ss_pred -ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHcc
Confidence 2333488899999999999999999999999876654
No 76
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.98 E-value=3.5e-06 Score=60.48 Aligned_cols=60 Identities=28% Similarity=0.367 Sum_probs=45.9
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHH
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVK 201 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~ 201 (210)
...+...|..+|.|+||.|+..|+..+...+. ..+..+..+++.+|.|+||.||..|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~----~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM----PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS----TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh----hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 55688899999999999999999998866542 4556789999999999999999999975
No 77
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.97 E-value=1.9e-05 Score=65.45 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=78.6
Q ss_pred HHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcc
Q 028383 77 KLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFI 156 (210)
Q Consensus 77 ~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I 156 (210)
+..+..|.+|| .+++|.++..|-...+.-+.-++. +...++-+|++|+.+.||.+
T Consensus 259 d~l~~~f~LFd-e~~tg~~D~re~v~~lavlc~p~~------------------------t~~iiq~afk~f~v~eDg~~ 313 (412)
T KOG4666|consen 259 DKLAPTFMLFD-EGTTGNGDYRETVKTLAVLCGPPV------------------------TPVIIQYAFKRFSVAEDGIS 313 (412)
T ss_pred hhhhhhhheec-CCCCCcccHHHHhhhheeeeCCCC------------------------cHHHHHHHHHhccccccccc
Confidence 33457788888 888888888887776665543332 46779999999999999999
Q ss_pred cHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 157 DALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 157 s~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
...+|..+|+.... +..=.+-.++...+...+|+|+|.+|.+++..
T Consensus 314 ge~~ls~ilq~~lg---v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 314 GEHILSLILQVVLG---VEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred chHHHHHHHHHhcC---cceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 99999999986421 33345567889999999999999999998753
No 78
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.89 E-value=1.6e-05 Score=41.26 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=21.5
Q ss_pred HHHhHhhhccCCCCcccHHHHHHHH
Q 028383 80 SKQASCNEKKHDDESLSRDQVETVM 104 (210)
Q Consensus 80 ~~~F~~~D~~d~~G~Is~~El~~~l 104 (210)
+++|..+| .|+||.|+.+|+..++
T Consensus 2 ~~~F~~~D-~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFD-TDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHT-TTSSSEEEHHHHHHHH
T ss_pred HHHHHHHc-CCCCCcCCHHHHHHHC
Confidence 47899999 9999999999998754
No 79
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.88 E-value=3e-05 Score=74.82 Aligned_cols=70 Identities=27% Similarity=0.452 Sum_probs=61.2
Q ss_pred HHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHH-----HHHHHHHhhCCCCCCceeHHHHHHHHHhhhhc
Q 028383 140 EVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLE-----NCKKMIKTFDENGDGRIDFKEFVKFMESSFVE 209 (210)
Q Consensus 140 ~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~-----~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~~e 209 (210)
+...+|+.||++.+|.++..+|+.+|+.+|..-++.++ ++++++..+|++.+|+|+..+|+.+|.+.-+|
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETe 2328 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETE 2328 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccc
Confidence 45678999999999999999999999999976334444 89999999999999999999999999876543
No 80
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=9.7e-05 Score=52.38 Aligned_cols=60 Identities=32% Similarity=0.496 Sum_probs=46.9
Q ss_pred HHhHhhcCCCCCcccHHHHHHHHHHh------CC-C-CCCcHHHHHHHHHh----hCCCCCCceeHHHHHHH
Q 028383 143 DAFDVFDENKDGFIDALELQRVLCIL------GM-K-EGFQLENCKKMIKT----FDENGDGRIDFKEFVKF 202 (210)
Q Consensus 143 ~~F~~~D~d~~G~Is~~El~~~l~~~------g~-~-~~ls~~~~~~l~~~----~D~~~dG~Is~~eF~~~ 202 (210)
.-|++.|.|++|.|+.-|+..++... |. + +-.++.+++.++.. -|.|+||.|+|.||++.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 56899999999999999999998854 22 2 22466677666554 58999999999999874
No 81
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.73 E-value=0.00017 Score=63.07 Aligned_cols=118 Identities=18% Similarity=0.290 Sum_probs=83.5
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHhcCCC------CCcc-cc-----hhhccCCHHHHHHHHhccCCCHHHHHHHhH
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTNLTLF------CSPE-GE-----ELPQKLGSRELSRLFEEKEPSLEEVKDAFD 146 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~------~~~~-~~-----~l~~~id~~EF~~~~~~~~~~~~~l~~~F~ 146 (210)
+..+|..|| ..++|.+|.+++..+..+..+. ++.+ +. .-...++|.||.+++.+- ..+.-+++|+
T Consensus 110 ~~~aFqlFD-r~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~--~~E~~~qafr 186 (694)
T KOG0751|consen 110 FEVAFQLFD-RLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEF--QLEHAEQAFR 186 (694)
T ss_pred HHHHHHHhc-ccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHH--HHHHHHHHHH
Confidence 357899999 9999999999999998876432 2211 11 112347899999887642 2455889999
Q ss_pred hhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhC-CCCCCceeHHHHHH
Q 028383 147 VFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFD-ENGDGRIDFKEFVK 201 (210)
Q Consensus 147 ~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D-~~~dG~Is~~eF~~ 201 (210)
..|+.++|.||.-+++.++.....+ +....+++.+-... .+...++|+..|..
T Consensus 187 ~~d~~~ng~is~Ldfq~imvt~~~h--~lt~~v~~nlv~vagg~~~H~vSf~yf~a 240 (694)
T KOG0751|consen 187 EKDKAKNGFISVLDFQDIMVTIRIH--LLTPFVEENLVSVAGGNDSHQVSFSYFNA 240 (694)
T ss_pred HhcccCCCeeeeechHhhhhhhhhh--cCCHHHhhhhhhhcCCCCccccchHHHHH
Confidence 9999999999999999999876544 55556665554443 33334577666543
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.71 E-value=0.00017 Score=43.77 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHh
Q 028383 94 SLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDALELQRVLCIL 168 (210)
Q Consensus 94 ~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~ 168 (210)
++|.+|++.+|+.+++..+ ...+..+|+..|++++|.+..+|+..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~-------------------------~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMD-------------------------DEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT-----------------------------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcC-------------------------HHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 3678899999998887766 6778899999999999999999999988754
No 83
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.63 E-value=0.00033 Score=49.47 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=54.1
Q ss_pred HHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCc
Q 028383 76 FKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGF 155 (210)
Q Consensus 76 ~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~ 155 (210)
...|..+|..+| . ++|.|+.++.+.++...|++ .+.|..++...|.|++|+
T Consensus 9 ~~~y~~~F~~l~-~-~~g~isg~~a~~~f~~S~L~---------------------------~~~L~~IW~LaD~~~dG~ 59 (104)
T PF12763_consen 9 KQKYDQIFQSLD-P-QDGKISGDQAREFFMKSGLP---------------------------RDVLAQIWNLADIDNDGK 59 (104)
T ss_dssp HHHHHHHHHCTS-S-STTEEEHHHHHHHHHHTTSS---------------------------HHHHHHHHHHH-SSSSSE
T ss_pred HHHHHHHHHhcC-C-CCCeEeHHHHHHHHHHcCCC---------------------------HHHHHHHHhhhcCCCCCc
Confidence 445779999988 5 68999999999999887763 567999999999999999
Q ss_pred ccHHHHHHHHHHh
Q 028383 156 IDALELQRVLCIL 168 (210)
Q Consensus 156 Is~~El~~~l~~~ 168 (210)
++.+||.-++..+
T Consensus 60 L~~~EF~iAm~Li 72 (104)
T PF12763_consen 60 LDFEEFAIAMHLI 72 (104)
T ss_dssp EEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988753
No 84
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.60 E-value=0.0011 Score=45.45 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=54.2
Q ss_pred hHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCC
Q 028383 75 DFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDG 154 (210)
Q Consensus 75 ~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G 154 (210)
.+..+-.+|..+- .+.|+++..||+.+|.. ||-.++.. ..+...+..+++.+|.|+||
T Consensus 6 ai~~lI~~FhkYa--G~~~tLsk~Elk~Ll~~-------------------Elp~~l~~-~~d~~~vd~im~~LD~n~Dg 63 (91)
T cd05024 6 SMEKMMLTFHKFA--GEKNYLNRDDLQKLMEK-------------------EFSEFLKN-QNDPMAVDKIMKDLDDCRDG 63 (91)
T ss_pred HHHHHHHHHHHHc--CCCCcCCHHHHHHHHHH-------------------HhHHHHcC-CCCHHHHHHHHHHhCCCCCC
Confidence 3445567888885 34679999999999863 22222222 23567899999999999999
Q ss_pred cccHHHHHHHHHHhC
Q 028383 155 FIDALELQRVLCILG 169 (210)
Q Consensus 155 ~Is~~El~~~l~~~g 169 (210)
.|+..|+..++..+.
T Consensus 64 ~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 64 KVGFQSFFSLIAGLL 78 (91)
T ss_pred cCcHHHHHHHHHHHH
Confidence 999999999887653
No 85
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.59 E-value=0.00042 Score=55.64 Aligned_cols=50 Identities=8% Similarity=0.022 Sum_probs=34.2
Q ss_pred hhhhhhhhHHHHHHHHhhhhccchhhhhhhhhhHHHHHHHhHhhhccCCCCcccHHHHHHHH
Q 028383 43 ISCVNTFFLSHRSFVQSQFESCESRNWDEKSQDFKLCSKQASCNEKKHDDESLSRDQVETVM 104 (210)
Q Consensus 43 f~~~~~lk~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l 104 (210)
|..+..+|+-+..-++.++...- ++-.-.|+..| +||||.|+.+|++--+
T Consensus 117 kisAkEmqrwImektaEHfqeam-----------eeSkthFraVD-pdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 117 KISAKEMQRWIMEKTAEHFQEAM-----------EESKTHFRAVD-PDGDGHVSWDEYKVKF 166 (362)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH-----------hhhhhheeeeC-CCCCCceehhhhhhHH
Confidence 44566777777777766663221 12235678899 9999999999997543
No 86
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.55 E-value=0.00044 Score=59.75 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=54.2
Q ss_pred HHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccHHH
Q 028383 81 KQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDALE 160 (210)
Q Consensus 81 ~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~E 160 (210)
.+|+.+| +|++|.||.+||+.+..-++.... ...+.+.+-+.-+.+|.|+||.|+..|
T Consensus 551 tiF~~iD-~D~SG~isldEF~~a~~l~~sh~~---------------------~~i~~~~i~~la~~mD~NkDG~IDlNE 608 (631)
T KOG0377|consen 551 TIFNIID-ADNSGEISLDEFRTAWKLLSSHMN---------------------GAISDDEILELARSMDLNKDGKIDLNE 608 (631)
T ss_pred HHHHHhc-cCCCCceeHHHHHHHHHHHHhhcC---------------------CCcCHHHHHHHHHhhccCCCCcccHHH
Confidence 8899999 999999999999999876643322 112356677778889999999999999
Q ss_pred HHHHHHHhC
Q 028383 161 LQRVLCILG 169 (210)
Q Consensus 161 l~~~l~~~g 169 (210)
|.++++...
T Consensus 609 fLeAFrlvd 617 (631)
T KOG0377|consen 609 FLEAFRLVD 617 (631)
T ss_pred HHHHHhhhc
Confidence 999988654
No 87
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.55 E-value=0.00052 Score=59.55 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=44.6
Q ss_pred HHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCccc
Q 028383 78 LCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFID 157 (210)
Q Consensus 78 ~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is 157 (210)
.++.+|..+| .|+||.|+.+||.. ...+|+.+|.|++|.|+
T Consensus 335 ~l~~aF~~~D-~dgdG~Is~~E~~~--------------------------------------~~~~F~~~D~d~DG~Is 375 (391)
T PRK12309 335 AAQEIFRLYD-LDGDGFITREEWLG--------------------------------------SDAVFDALDLNHDGKIT 375 (391)
T ss_pred HHHHHHHHhC-CCCCCcCcHHHHHH--------------------------------------HHHHHHHhCCCCCCCCc
Confidence 4569999999 99999999999831 25679999999999999
Q ss_pred HHHHHHHHHH
Q 028383 158 ALELQRVLCI 167 (210)
Q Consensus 158 ~~El~~~l~~ 167 (210)
.+||..++..
T Consensus 376 ~eEf~~~~~~ 385 (391)
T PRK12309 376 PEEMRAGLGA 385 (391)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 88
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.44 E-value=0.00046 Score=60.77 Aligned_cols=66 Identities=26% Similarity=0.515 Sum_probs=57.2
Q ss_pred HHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCC-CCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 139 EEVKDAFDVFDENKDGFIDALELQRVLCILGMKE-GFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 139 ~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~-~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
..++..|...| |++|+|+..|+..++...+.+. ....+++++++...+.|.+|.|+|++|+.++..
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 35788899999 9999999999999999877541 235899999999999999999999999997654
No 89
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.44 E-value=0.00049 Score=46.35 Aligned_cols=67 Identities=21% Similarity=0.425 Sum_probs=55.7
Q ss_pred HHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCC----CCCceeHHHHHHHHHhhh
Q 028383 140 EVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDEN----GDGRIDFKEFVKFMESSF 207 (210)
Q Consensus 140 ~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~----~dG~Is~~eF~~~~~~~~ 207 (210)
+++.+|..+-. +.+.||.++|.+.|........++.+++..++..+..+ ..+.+++++|..+|.+..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36789999954 88999999999999876554457999999999998655 478999999999998764
No 90
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.41 E-value=0.00047 Score=59.86 Aligned_cols=109 Identities=15% Similarity=0.258 Sum_probs=69.0
Q ss_pred HHHhHhhhccCCCCcccHHHHHHH--HHhcCCCCC-cccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcc
Q 028383 80 SKQASCNEKKHDDESLSRDQVETV--MTNLTLFCS-PEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFI 156 (210)
Q Consensus 80 ~~~F~~~D~~d~~G~Is~~El~~~--l~~lg~~~~-~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I 156 (210)
+++|-.++ ..++|+|+.+|+... +..+-.-.. ....+..+..+++.|..+.. .|.-+|+|++|.|
T Consensus 228 ~rIFy~~n-rs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~-----------kFweLD~Dhd~li 295 (493)
T KOG2562|consen 228 QRIFYYLN-RSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYC-----------KFWELDTDHDGLI 295 (493)
T ss_pred hhhheeeC-CccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHH-----------HHhhhcccccccc
Confidence 57888889 999999999998653 222111000 00222222234454444332 3777899999999
Q ss_pred cHHHHHHHHHHhCCCCCCcHHHHHHHHHhh----CCCCCCceeHHHHHHHHHh
Q 028383 157 DALELQRVLCILGMKEGFQLENCKKMIKTF----DENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 157 s~~El~~~l~~~g~~~~ls~~~~~~l~~~~----D~~~dG~Is~~eF~~~~~~ 205 (210)
+.++|...-.. .++..-++.+|... -.-.+|+++|++|+.++..
T Consensus 296 dk~~L~ry~d~-----tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 296 DKEDLKRYGDH-----TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred CHHHHHHHhcc-----chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHH
Confidence 99998876432 25667778888732 3446788999988887754
No 91
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.27 E-value=0.00027 Score=56.73 Aligned_cols=68 Identities=25% Similarity=0.296 Sum_probs=50.9
Q ss_pred CHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhC-CCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028383 137 SLEEVKDAFDVFDENKDGFIDALELQRVLCILG-MKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFME 204 (210)
Q Consensus 137 ~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g-~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~ 204 (210)
....+..+|+..|.|.+|+||+.|+++.+..-- .+-.-+.++-+..|+..|+|+||.|+|+||.--+.
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 356789999999999999999999999876421 00001233445667778999999999999975543
No 92
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0031 Score=58.00 Aligned_cols=63 Identities=19% Similarity=0.410 Sum_probs=56.8
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFME 204 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~ 204 (210)
.-..+..|..+|+..+|++|...-+.+|...+ ++...+..++..-|.|+||+++-+||+-.|.
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~----Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSG----LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcC----CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 44678999999999999999999999998877 7788999999999999999999999987763
No 93
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.01 E-value=0.0073 Score=53.15 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=59.0
Q ss_pred HhhhccCCCCcccHHHHHHHHHhc-CCC-CCcccchh---------hccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCC
Q 028383 84 SCNEKKHDDESLSRDQVETVMTNL-TLF-CSPEGEEL---------PQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENK 152 (210)
Q Consensus 84 ~~~D~~d~~G~Is~~El~~~l~~l-g~~-~~~~~~~l---------~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~ 152 (210)
...+ .++.-..+.++|....-.+ +.+ ..++...+ ++.|+|+||.++-.-...+....+.+|..||+.+
T Consensus 43 as~e-~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~~~aFqlFDr~~ 121 (694)
T KOG0751|consen 43 ASIE-KNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALFEVAFQLFDRLG 121 (694)
T ss_pred hHHh-hccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHHHHHHHHhcccC
Confidence 3455 6777788888887654333 111 11121111 2458999998865433445677889999999999
Q ss_pred CCcccHHHHHHHHHHhC
Q 028383 153 DGFIDALELQRVLCILG 169 (210)
Q Consensus 153 ~G~Is~~El~~~l~~~g 169 (210)
+|.+|.+++.+++....
T Consensus 122 ~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 122 NGEVSFEDVADIFGQTN 138 (694)
T ss_pred CCceehHHHHHHHhccc
Confidence 99999999999998754
No 94
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.95 E-value=0.0011 Score=34.04 Aligned_cols=26 Identities=42% Similarity=0.692 Sum_probs=14.8
Q ss_pred HHHHhHhhcCCCCCcccHHHHHHHHH
Q 028383 141 VKDAFDVFDENKDGFIDALELQRVLC 166 (210)
Q Consensus 141 l~~~F~~~D~d~~G~Is~~El~~~l~ 166 (210)
++.+|+.+|.+++|.|+..+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34555666666666666666555554
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.93 E-value=0.00024 Score=51.03 Aligned_cols=57 Identities=21% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccH
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDA 158 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~ 158 (210)
+.=.|..+| .|+||.|+..|+..+...+ .+. ..-++..|+..|.|+||.||.
T Consensus 56 ~~W~F~~LD-~n~d~~L~~~El~~l~~~l--~~~-------------------------e~C~~~F~~~CD~n~d~~Is~ 107 (113)
T PF10591_consen 56 VHWKFCQLD-RNKDGVLDRSELKPLRRPL--MPP-------------------------EHCARPFFRSCDVNKDGKISL 107 (113)
T ss_dssp HHHHHHHH---T-SSEE-TTTTGGGGSTT--STT-------------------------GGGHHHHHHHH-TT-SSSEEH
T ss_pred hhhhHhhhc-CCCCCccCHHHHHHHHHHH--hhh-------------------------HHHHHHHHHHcCCCCCCCCCH
Confidence 346688999 9999999999998776544 111 223677889999999999999
Q ss_pred HHHHH
Q 028383 159 LELQR 163 (210)
Q Consensus 159 ~El~~ 163 (210)
.|...
T Consensus 108 ~EW~~ 112 (113)
T PF10591_consen 108 DEWCN 112 (113)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 99764
No 96
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.90 E-value=0.02 Score=43.82 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=77.1
Q ss_pred HHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCccc-chh-h-ccCCH------------HHHHHHHh------------
Q 028383 80 SKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEG-EEL-P-QKLGS------------RELSRLFE------------ 132 (210)
Q Consensus 80 ~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~-~~l-~-~~id~------------~EF~~~~~------------ 132 (210)
|+.-.-+| .|+||.|..-|--..++.+|++.--.. .-+ + ..+++ .=++.-+.
T Consensus 10 QqHvaFFD-rd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD 88 (174)
T PF05042_consen 10 QQHVAFFD-RDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYD 88 (174)
T ss_pred hhhhceeC-CCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccc
Confidence 35555789 999999999999999999998753110 000 0 00110 00000000
Q ss_pred -ccCCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCC---CC--CcHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028383 133 -EKEPSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMK---EG--FQLENCKKMIKTFDENGDGRIDFKEFVKFM 203 (210)
Q Consensus 133 -~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~---~~--ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~ 203 (210)
+..-..++.+++|..+++.+.+.+|..|+.++++.-... .+ .+.-|+..+...+ .+.||.+..++-..++
T Consensus 89 ~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 89 TEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 113346789999999999999999999999999863221 01 2334555554444 6779999888766554
No 97
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.87 E-value=0.0014 Score=33.64 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=24.1
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHh
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTN 106 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~ 106 (210)
++++|..+| .+++|.|+..||..+++.
T Consensus 2 ~~~~f~~~d-~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFD-KDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHC-CCCCCcEeHHHHHHHHHh
Confidence 458899999 999999999999998865
No 98
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.66 E-value=0.018 Score=53.03 Aligned_cols=125 Identities=18% Similarity=0.269 Sum_probs=93.7
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcc-----cchh----hccCCHHHHHHHHhccCCCHHHHHHHhHhhc
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPE-----GEEL----PQKLGSRELSRLFEEKEPSLEEVKDAFDVFD 149 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~-----~~~l----~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D 149 (210)
+..+|...| ++.+|.++..+...+++.+....... ..+. ...+...+|........... .+...|..+-
T Consensus 138 i~~~~~~ad-~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp-ev~~~f~~~s 215 (746)
T KOG0169|consen 138 IHSIFQEAD-KNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP-EVYFLFVQYS 215 (746)
T ss_pred HHHHHHHHc-cccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc-hHHHHHHHHh
Confidence 347899999 99999999999999998886655421 1111 12355667766655433334 7888888874
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCC----CCCceeHHHHHHHHHhh
Q 028383 150 ENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDEN----GDGRIDFKEFVKFMESS 206 (210)
Q Consensus 150 ~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~----~dG~Is~~eF~~~~~~~ 206 (210)
++.++++.++|..+|...+...+.+.+.++++++.+... ..+.++.+.|..+|...
T Consensus 216 -~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 216 -HGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred -CCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 448999999999999988655568999999999888544 35679999999998654
No 99
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.18 E-value=0.0091 Score=50.24 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=53.8
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
...+..+|..+|.|.+|.++..||..+-. + -.+.-++.+|+.+|...||.|+-.|++..+.+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l--d----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL--D----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc--c----CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 56789999999999999999999998743 2 45678899999999999999999999987754
No 100
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.056 Score=47.77 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=55.4
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFME 204 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~ 204 (210)
.+.+-.-|+.+-+|-+|+|+..--+.++.... ++-+|+..|++..|.+.||.++..||+..|.
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk----lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK----LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc----CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 34566779999999999999999999988755 7779999999999999999999999999873
No 101
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.04 E-value=0.027 Score=47.15 Aligned_cols=63 Identities=25% Similarity=0.280 Sum_probs=50.7
Q ss_pred HHHHHhHhhcCCCCCcccHHHHH---HHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q 028383 140 EVKDAFDVFDENKDGFIDALELQ---RVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 140 ~l~~~F~~~D~d~~G~Is~~El~---~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~ 206 (210)
.+..-|..+|+|+++.|...|++ .++..-. -...-...+++-+|.|+|..|+++|+...+...
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s----~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS----KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhc----cHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 56778999999999999999955 4444322 345667889999999999999999999887643
No 102
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.87 E-value=0.017 Score=37.57 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=38.8
Q ss_pred CHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCC-------CCCceeHHHHHHH
Q 028383 137 SLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDEN-------GDGRIDFKEFVKF 202 (210)
Q Consensus 137 ~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~-------~dG~Is~~eF~~~ 202 (210)
+.+.+..+|+.+ .++.++||.+||++.|.. ++++-++..+..- .-|.++|..|++.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p---------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP---------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C---------CCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCc---------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 457899999999 788999999999997532 2334444443222 1267999998753
No 103
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.84 E-value=0.085 Score=47.64 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=43.8
Q ss_pred HHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028383 139 EEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFME 204 (210)
Q Consensus 139 ~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~ 204 (210)
+.+..+|..||.|+||.++..|+..++...+..+..+.-+.+. --.+..|.++|+-|+..+.
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~----t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS----TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc----ceecccceeehhhHHHHHH
Confidence 4688999999999999999999999999876432111111111 1123678999999987663
No 104
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=94.78 E-value=0.054 Score=40.33 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=44.1
Q ss_pred cCCCCcccHHHHHHHHHhcCCCCCccc--chhhcc--------CCHHHH---HHHHhccCCCHHHH----HHHhHhhcCC
Q 028383 89 KHDDESLSRDQVETVMTNLTLFCSPEG--EELPQK--------LGSREL---SRLFEEKEPSLEEV----KDAFDVFDEN 151 (210)
Q Consensus 89 ~d~~G~Is~~El~~~l~~lg~~~~~~~--~~l~~~--------id~~EF---~~~~~~~~~~~~~l----~~~F~~~D~d 151 (210)
.||.|.+|.++|-.++.-+.-..+.+. .--.+. |.-.+. ++-+.+...+.+++ .++..-.|.|
T Consensus 82 eDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~D 161 (189)
T KOG0038|consen 82 EDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLD 161 (189)
T ss_pred cCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Confidence 778888888887776654322111110 001111 211222 22233334444443 4555667999
Q ss_pred CCCcccHHHHHHHHHH
Q 028383 152 KDGFIDALELQRVLCI 167 (210)
Q Consensus 152 ~~G~Is~~El~~~l~~ 167 (210)
|+|+|+..|+..++..
T Consensus 162 gDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 162 GDGKLSFAEFEHVILR 177 (189)
T ss_pred CCCcccHHHHHHHHHh
Confidence 9999999999998765
No 105
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=94.59 E-value=0.16 Score=45.21 Aligned_cols=71 Identities=10% Similarity=0.109 Sum_probs=51.7
Q ss_pred hhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCC
Q 028383 73 SQDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENK 152 (210)
Q Consensus 73 ~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~ 152 (210)
..++.++++.|..+| |++|+|+..|+..++...+..... ...+.++.+....++|.
T Consensus 15 q~El~~l~~kF~~~d--~~~G~v~~~~l~~~f~k~~~~~g~----------------------~~~eei~~~l~~~~~~~ 70 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD--DQKGYVTVYELPDAFKKAKLPLGY----------------------FVREEIKEILGEVGVDA 70 (627)
T ss_pred HHHHHHHHHHHHhhc--CCCCeeehHHhHHHHHHhcccccc----------------------hhHHHHHHHHhccCCCc
Confidence 344566778999997 799999999999999988765431 12455666667777777
Q ss_pred CCcccHHHHHHHHHH
Q 028383 153 DGFIDALELQRVLCI 167 (210)
Q Consensus 153 ~G~Is~~El~~~l~~ 167 (210)
+|.|+.+||..++..
T Consensus 71 ~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 71 DGRVEFEEFVGIFLN 85 (627)
T ss_pred CCccCHHHHHHHHHh
Confidence 777777777775544
No 106
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.46 E-value=0.065 Score=52.62 Aligned_cols=60 Identities=13% Similarity=0.356 Sum_probs=52.1
Q ss_pred HHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 143 DAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 143 ~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
..|+-+|+||.|.|+..+|.+++.... ..+..+++-++.....|.+...+|++|+.-+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k---~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK---HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc---cchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 459999999999999999999987533 378899999999999999999999999986644
No 107
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.37 E-value=0.58 Score=39.18 Aligned_cols=63 Identities=25% Similarity=0.402 Sum_probs=45.6
Q ss_pred HHHhHhhcCCCCCcccHHHHHHHHHHhC---CCCCCcHHHH-----------HHHHHhhCCCCCCceeHHHHHHHHH
Q 028383 142 KDAFDVFDENKDGFIDALELQRVLCILG---MKEGFQLENC-----------KKMIKTFDENGDGRIDFKEFVKFME 204 (210)
Q Consensus 142 ~~~F~~~D~d~~G~Is~~El~~~l~~~g---~~~~ls~~~~-----------~~l~~~~D~~~dG~Is~~eF~~~~~ 204 (210)
+..|...|.|++|+++-.||..++..-- ..+.-.+++. +.+++.+|.|.|..||.+||++.-.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 5568999999999999999998876410 0111122221 4567889999999999999987543
No 108
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.24 E-value=0.33 Score=36.71 Aligned_cols=64 Identities=13% Similarity=0.341 Sum_probs=48.7
Q ss_pred HHHhHhh---cCCCCCcccHHHHHHHHHHhCC-CCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 142 KDAFDVF---DENKDGFIDALELQRVLCILGM-KEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 142 ~~~F~~~---D~d~~G~Is~~El~~~l~~~g~-~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
+.+|..| -..+...++..-|..+|+..++ ...++..+++-+|..+-..+...|+|++|..+|..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 4555555 4566678999999999999875 23489999999999987666778999999999864
No 109
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=0.068 Score=49.60 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=53.1
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccH
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDA 158 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~ 158 (210)
++.+|+.+| +..+|++|-..-+.+|-..+++ ...|..++..-|.|+||.++.
T Consensus 197 Y~QlFNa~D-ktrsG~Lsg~qaR~aL~qS~Lp---------------------------q~~LA~IW~LsDvd~DGkL~~ 248 (1118)
T KOG1029|consen 197 YRQLFNALD-KTRSGYLSGQQARSALGQSGLP---------------------------QNQLAHIWTLSDVDGDGKLSA 248 (1118)
T ss_pred HHHHhhhcc-cccccccccHHHHHHHHhcCCc---------------------------hhhHhhheeeeccCCCCcccH
Confidence 679999999 9999999999999998776653 345888899999999999999
Q ss_pred HHHHHHHHH
Q 028383 159 LELQRVLCI 167 (210)
Q Consensus 159 ~El~~~l~~ 167 (210)
+||.-++..
T Consensus 249 dEfilam~l 257 (1118)
T KOG1029|consen 249 DEFILAMHL 257 (1118)
T ss_pred HHHHHHHHH
Confidence 999887764
No 110
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=93.73 E-value=0.08 Score=44.48 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=56.8
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
.+.++..|..||.+++|.++..|-...+.-+.. +..+.+-++--++.++.+.||.+.-.+|-.+++.
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~-p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCG-PPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeC-CCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 467899999999999999999887777765433 3478999999999999999999999998877764
No 111
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.51 E-value=0.17 Score=45.57 Aligned_cols=66 Identities=20% Similarity=0.372 Sum_probs=58.7
Q ss_pred HHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhh
Q 028383 140 EVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSF 207 (210)
Q Consensus 140 ~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~ 207 (210)
..+.-|..+|.|+.|+++..++.++|+..+.. .+++.+.+++++.|.+-+|.+...||..++....
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~--~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVG--WDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 34567999999999999999999999998844 8999999999999999999999999999886543
No 112
>PLN02952 phosphoinositide phospholipase C
Probab=93.42 E-value=1.1 Score=41.32 Aligned_cols=68 Identities=19% Similarity=0.347 Sum_probs=50.2
Q ss_pred CHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhC-------CCCCCceeHHHHHHHHHh
Q 028383 137 SLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFD-------ENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 137 ~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D-------~~~dG~Is~~eF~~~~~~ 205 (210)
...++..+|..+-. +.+.++.++|..+|.........+.+++..++..+- ..+.+.++++.|..+|..
T Consensus 36 ~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 36 PPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 46779999999954 447899999999999876433467777887766541 112345899999999874
No 113
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.67 E-value=0.77 Score=42.03 Aligned_cols=106 Identities=25% Similarity=0.304 Sum_probs=70.2
Q ss_pred CCCCcccHHHHHHHHHhc---------CCC-CCcccchhhccCCHHHHHHHHhcc---CCCHHHHHHHhHhhcCCCCCcc
Q 028383 90 HDDESLSRDQVETVMTNL---------TLF-CSPEGEELPQKLGSRELSRLFEEK---EPSLEEVKDAFDVFDENKDGFI 156 (210)
Q Consensus 90 d~~G~Is~~El~~~l~~l---------g~~-~~~~~~~l~~~id~~EF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I 156 (210)
-.++.++.+||..++... |.. ..+...-....+++..|..++... ..+..-++.+|+.+|.+++|.|
T Consensus 493 ~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~L 572 (671)
T KOG4347|consen 493 VQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLL 572 (671)
T ss_pred cccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCccee
Confidence 367889999988776422 111 111111122237777777766532 1334567899999999999999
Q ss_pred cHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHH
Q 028383 157 DALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKE 198 (210)
Q Consensus 157 s~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~e 198 (210)
+..++...|..+-.. ---+.+.-+++.+|++++ ..+.++
T Consensus 573 tf~~lv~gL~~l~~~--~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 573 TFKDLVSGLSILKAG--DALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred EHHHHHHHHHHHHhh--hHHHHHHHHHhhccCCcc-cccccc
Confidence 999999999876533 344567778888888887 555444
No 114
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=91.87 E-value=0.47 Score=45.10 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=57.6
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCc---HHHHHHHHHhhCCCCCCceeHHHHHHHHHhhhh
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQ---LENCKKMIKTFDENGDGRIDFKEFVKFMESSFV 208 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls---~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~~ 208 (210)
..+++..|..+|....|.++.+++...|..+|....-. ..++-.++...|.+.-|++++.+|...|.+.+.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 35789999999999999999999999999999752111 235556777778888899999999999988765
No 115
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=91.41 E-value=0.71 Score=30.69 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=46.1
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCC----CCC
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDEN----KDG 154 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d----~~G 154 (210)
++.+|..+- . +.+.||.++|...|+.-...+. .+.+.++.++..|.++ ..+
T Consensus 2 i~~if~~ys-~-~~~~mt~~~f~~FL~~eQ~~~~-----------------------~~~~~~~~li~~~~~~~~~~~~~ 56 (83)
T PF09279_consen 2 IEEIFRKYS-S-DKEYMTAEEFRRFLREEQGEPR-----------------------LTDEQAKELIEKFEPDERNRQKG 56 (83)
T ss_dssp HHHHHHHHC-T-TSSSEEHHHHHHHHHHTSS-TT-----------------------SSHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHh-C-CCCcCCHHHHHHHHHHHhcccc-----------------------CcHHHHHHHHHHHccchhhcccC
Confidence 457888885 4 7899999999999986544322 1355566666666443 469
Q ss_pred cccHHHHHHHHHH
Q 028383 155 FIDALELQRVLCI 167 (210)
Q Consensus 155 ~Is~~El~~~l~~ 167 (210)
.+|.++|...|..
T Consensus 57 ~lt~~gF~~fL~S 69 (83)
T PF09279_consen 57 QLTLEGFTRFLFS 69 (83)
T ss_dssp EEEHHHHHHHHHS
T ss_pred CcCHHHHHHHHCC
Confidence 9999999999865
No 116
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.10 E-value=0.2 Score=42.16 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=44.9
Q ss_pred HhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccHHHH
Q 028383 82 QASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDALEL 161 (210)
Q Consensus 82 ~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El 161 (210)
-|..+| +|+++.|...|++-+=+-+ ........-.+..|+..|.|+|-.||..|+
T Consensus 338 ~F~qLd-kN~nn~i~rrEwKpFK~~l------------------------~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew 392 (421)
T KOG4578|consen 338 YFNQLD-KNSNNDIERREWKPFKRVL------------------------LKKSKPRKCSRKFFKYCDLNKDKKISLDEW 392 (421)
T ss_pred eeeeec-ccccCccchhhcchHHHHH------------------------HhhccHHHHhhhcchhcccCCCceecHHHH
Confidence 467888 9999999999976532211 111112345678899999999999999999
Q ss_pred HHHHHH
Q 028383 162 QRVLCI 167 (210)
Q Consensus 162 ~~~l~~ 167 (210)
+..|..
T Consensus 393 ~~CL~~ 398 (421)
T KOG4578|consen 393 RGCLGV 398 (421)
T ss_pred hhhhcc
Confidence 998764
No 117
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=90.11 E-value=19 Score=34.80 Aligned_cols=104 Identities=15% Similarity=0.306 Sum_probs=72.3
Q ss_pred HHHHHHhcCCCCCcccchh-hccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCC-------
Q 028383 100 VETVMTNLTLFCSPEGEEL-PQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMK------- 171 (210)
Q Consensus 100 l~~~l~~lg~~~~~~~~~l-~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~------- 171 (210)
+..+|..+|++.... +.+ .....++.|..++..-. ...++..+|..+-.++.-++|.++|..+|..-..+
T Consensus 183 Ve~al~~~gLp~~k~-dsI~~d~f~~e~f~~~l~klc-pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeil 260 (1189)
T KOG1265|consen 183 VEKALEACGLPSGKN-DSIEPDDFTLEKFYRLLNKLC-PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEIL 260 (1189)
T ss_pred HHHHHHhcCCCCCCc-CccChhhccHHHHHHHHHhcC-CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhh
Confidence 444566666655421 111 12234555655554322 23568999999988888999999999999864321
Q ss_pred -CCCcHHHHHHHHHhhCCCC----CCceeHHHHHHHHHh
Q 028383 172 -EGFQLENCKKMIKTFDENG----DGRIDFKEFVKFMES 205 (210)
Q Consensus 172 -~~ls~~~~~~l~~~~D~~~----dG~Is~~eF~~~~~~ 205 (210)
+..++..+..+++.+..|+ +|+++-+-|+.++..
T Consensus 261 fp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 261 FPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred cCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 2367899999999998775 689999999998865
No 118
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=0.8 Score=32.80 Aligned_cols=66 Identities=21% Similarity=0.128 Sum_probs=43.6
Q ss_pred HHhHhhhccCCCCcccHHHHHHHHHhc------CCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCC
Q 028383 81 KQASCNEKKHDDESLSRDQVETVMTNL------TLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDG 154 (210)
Q Consensus 81 ~~F~~~D~~d~~G~Is~~El~~~l~~l------g~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G 154 (210)
..|+..| .|++|.|+--|+..++... |..+.+- .+-.|. ..-+..+.+--|.|++|
T Consensus 71 HYF~MHD-ldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl-------~sE~El----------e~~iD~vL~DdDfN~DG 132 (144)
T KOG4065|consen 71 HYFSMHD-LDKNNFLDGIELLKAITHTHDAHDSGHEPVPL-------SSEAEL----------ERLIDAVLDDDDFNGDG 132 (144)
T ss_pred hhhhhhc-cCcCCcchHHHHHHHHHHHhhhhhcCCCCCCC-------CCHHHH----------HHHHHHHhcccccCCCc
Confidence 4788999 9999999999998888643 3222210 011111 11234456667899999
Q ss_pred cccHHHHHHH
Q 028383 155 FIDALELQRV 164 (210)
Q Consensus 155 ~Is~~El~~~ 164 (210)
+|+..|+.+.
T Consensus 133 ~IDYgEflK~ 142 (144)
T KOG4065|consen 133 VIDYGEFLKR 142 (144)
T ss_pred eeeHHHHHhh
Confidence 9999998764
No 119
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.54 E-value=1.8 Score=39.27 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=60.4
Q ss_pred hhhhhhhhhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHh
Q 028383 66 SRNWDEKSQDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAF 145 (210)
Q Consensus 66 ~~~~~~~~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F 145 (210)
...+.....+|..++..|..+| .|+.|.++..++..+|+..+..++ .+.+.+..
T Consensus 582 ~~~i~~~~~~~~~~~~rf~~lD-~~k~~~~~i~~v~~vlk~~~~~~d-------------------------~~~~~~~l 635 (680)
T KOG0042|consen 582 SIPIKLTPEDFLRRKTRFAFLD-ADKKAYQAIADVLKVLKSENVGWD-------------------------EDRLHEEL 635 (680)
T ss_pred ccccccCHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhcCCCC-------------------------HHHHHHHH
Confidence 3344556677888899999999 999999999999999998886666 44556666
Q ss_pred HhhcCCCCCcccHHHHHHHHHHh
Q 028383 146 DVFDENKDGFIDALELQRVLCIL 168 (210)
Q Consensus 146 ~~~D~d~~G~Is~~El~~~l~~~ 168 (210)
+-.|.+-+|++...|+.+++...
T Consensus 636 ~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 636 QEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHhhcceeeHHHHHHHHHHH
Confidence 66676668888888888877754
No 120
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=88.97 E-value=1.7 Score=33.34 Aligned_cols=66 Identities=17% Similarity=0.397 Sum_probs=50.9
Q ss_pred HHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCC-----------------------------------------------
Q 028383 140 EVKDAFDVFDENKDGFIDALELQRVLCILGMKE----------------------------------------------- 172 (210)
Q Consensus 140 ~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~----------------------------------------------- 172 (210)
.|++=..-||+|+||.|...|--.-++.+|...
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 355556678999999999999776666544220
Q ss_pred ----CCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 173 ----GFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 173 ----~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
...++..+++|.+++..+.+.+|+.|..++++.
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 024678899999999888888999999999875
No 121
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=88.42 E-value=0.55 Score=39.88 Aligned_cols=59 Identities=17% Similarity=0.087 Sum_probs=46.7
Q ss_pred HHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccHHH
Q 028383 81 KQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDALE 160 (210)
Q Consensus 81 ~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~E 160 (210)
=+|..+| .|.||.++..||+.+.. +. .+.-++..|...|...+|.|+..|
T Consensus 254 WMFnklD-~N~Dl~Ld~sEl~~I~l--dk---------------------------nE~CikpFfnsCD~~kDg~iS~~E 303 (434)
T KOG3555|consen 254 WMFNKLD-TNYDLLLDQSELRAIEL--DK---------------------------NEACIKPFFNSCDTYKDGSISTNE 303 (434)
T ss_pred hhhhccc-cccccccCHHHhhhhhc--cC---------------------------chhHHHHHHhhhcccccCccccch
Confidence 5678888 88888888888876542 11 234578889999999999999999
Q ss_pred HHHHHHHhC
Q 028383 161 LQRVLCILG 169 (210)
Q Consensus 161 l~~~l~~~g 169 (210)
....+..-+
T Consensus 304 WC~CF~k~~ 312 (434)
T KOG3555|consen 304 WCYCFQKSD 312 (434)
T ss_pred hhhhhccCC
Confidence 998887665
No 122
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=88.35 E-value=1.1 Score=41.68 Aligned_cols=66 Identities=24% Similarity=0.419 Sum_probs=55.2
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
..-+..+|+..|++++|.++..+...++..+... ++...+..++++.+..++|++...+|.++...
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~--l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQ--LSESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHh--hhHHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 4457788999999999999999999999888755 78888888888888888899999888876543
No 123
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=88.34 E-value=1.8 Score=41.38 Aligned_cols=89 Identities=16% Similarity=0.088 Sum_probs=68.0
Q ss_pred hhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcc---cchhh-----------ccCCHHHHHHHHhcc---C
Q 028383 73 SQDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPE---GEELP-----------QKLGSRELSRLFEEK---E 135 (210)
Q Consensus 73 ~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~---~~~l~-----------~~id~~EF~~~~~~~---~ 135 (210)
..+.+++++.|..+| ....|.++.+++..+|..+|.+...+ ..++. +.+.+.+|...+.+. .
T Consensus 743 Q~v~~ElrAle~~~~-~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l 821 (890)
T KOG0035|consen 743 QYVLDELRALENEQD-KIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDL 821 (890)
T ss_pred HHHHHHHHHHHhHHH-HhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhh
Confidence 466788999999999 99999999999999999999887642 11211 235688888877643 3
Q ss_pred CCHHHHHHHhHhhcCCCCCcccHHHHHH
Q 028383 136 PSLEEVKDAFDVFDENKDGFIDALELQR 163 (210)
Q Consensus 136 ~~~~~l~~~F~~~D~d~~G~Is~~El~~ 163 (210)
.....+..+|+.+-++.. +|..+||..
T Consensus 822 ~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 822 DTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred cHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 455677888888876665 899999887
No 124
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.05 E-value=6.6 Score=26.87 Aligned_cols=65 Identities=15% Similarity=0.310 Sum_probs=42.4
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHH-------hCCCC--CCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCI-------LGMKE--GFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~-------~g~~~--~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
.++++.+|+.+ .|++|.++..-|..+|+. +|+.. +-.+..++..|... .....|+-++|+..|..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 36789999999 699999999998888875 33211 13566777777765 24567999999998864
No 125
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=84.95 E-value=0.9 Score=32.48 Aligned_cols=31 Identities=19% Similarity=0.457 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028383 174 FQLENCKKMIKTFDENGDGRIDFKEFVKFME 204 (210)
Q Consensus 174 ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~ 204 (210)
+++++++.+..++-.|..|.|.|.||+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 7999999999999999999999999998765
No 126
>PLN02222 phosphoinositide phospholipase C 2
Probab=84.19 E-value=4 Score=37.47 Aligned_cols=68 Identities=18% Similarity=0.350 Sum_probs=53.4
Q ss_pred CHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCC-CCCCceeHHHHHHHHHhh
Q 028383 137 SLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDE-NGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 137 ~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~-~~dG~Is~~eF~~~~~~~ 206 (210)
...++..+|..+-. ++.++.++|..+|.........+.+.+..+++.+.. -..+.++++.|..+|...
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 45689999999853 479999999999998764334678889999988642 245679999999999764
No 127
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=84.15 E-value=1.1 Score=40.98 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=46.0
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccH
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDA 158 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~ 158 (210)
..++|..+| .+++|.|+..++..+|..+.... -.+.++-.|+.+|++++ ....
T Consensus 557 ~~rlF~l~D-~s~~g~Ltf~~lv~gL~~l~~~~-------------------------~~ek~~l~y~lh~~p~~-~~d~ 609 (671)
T KOG4347|consen 557 LERLFRLLD-DSMTGLLTFKDLVSGLSILKAGD-------------------------ALEKLKLLYKLHDPPAD-ELDR 609 (671)
T ss_pred HHHHHHhcc-cCCcceeEHHHHHHHHHHHHhhh-------------------------HHHHHHHHHhhccCCcc-cccc
Confidence 458899999 99999999999999887764322 24678889999999999 8888
Q ss_pred HHH
Q 028383 159 LEL 161 (210)
Q Consensus 159 ~El 161 (210)
+|.
T Consensus 610 e~~ 612 (671)
T KOG4347|consen 610 EEV 612 (671)
T ss_pred ccc
Confidence 887
No 128
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.35 E-value=3.6 Score=36.83 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=46.5
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccH
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDA 158 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~ 158 (210)
+-..|+.+. .|-+|.|+-.--+.++.+..+ ..++|..++.+.|.|+||.++.
T Consensus 233 YvnQFrtvQ-pDp~gfisGsaAknFFtKSkl---------------------------pi~ELshIWeLsD~d~DGALtL 284 (737)
T KOG1955|consen 233 YVNQFRTVQ-PDPHGFISGSAAKNFFTKSKL---------------------------PIEELSHIWELSDVDRDGALTL 284 (737)
T ss_pred HHhhhhccc-CCcccccccHHHHhhhhhccC---------------------------chHHHHHHHhhcccCccccccH
Confidence 455666666 677777776666665554332 4567999999999999999999
Q ss_pred HHHHHHHHH
Q 028383 159 LELQRVLCI 167 (210)
Q Consensus 159 ~El~~~l~~ 167 (210)
.||..++..
T Consensus 285 ~EFcAAfHL 293 (737)
T KOG1955|consen 285 SEFCAAFHL 293 (737)
T ss_pred HHHHhhHhh
Confidence 999999875
No 129
>PLN02228 Phosphoinositide phospholipase C
Probab=81.85 E-value=7.4 Score=35.69 Aligned_cols=69 Identities=14% Similarity=0.306 Sum_probs=53.7
Q ss_pred CCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCC----CCCceeHHHHHHHHHhh
Q 028383 136 PSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDEN----GDGRIDFKEFVKFMESS 206 (210)
Q Consensus 136 ~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~----~dG~Is~~eF~~~~~~~ 206 (210)
.+..++..+|..+-. ++.++.++|..+|.........+.+.+..++..+... ..|.++.+.|..+|...
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 356789999998853 3689999999999987543335677889999988643 34679999999999764
No 130
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=81.21 E-value=2.5 Score=31.36 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=29.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCC-------CCCceeHHHHHHHHHhhhh
Q 028383 153 DGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDEN-------GDGRIDFKEFVKFMESSFV 208 (210)
Q Consensus 153 ~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~-------~dG~Is~~eF~~~~~~~~~ 208 (210)
=+.||..||.++=.-+. .+...+..+++++..+ ..+.|+|+.|..+|..++.
T Consensus 5 ~~~lsp~eF~qLq~y~e----ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe 63 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSE----YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE 63 (138)
T ss_dssp -S-S-HHHHHHHHHHHH----H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT
T ss_pred eeccCHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc
Confidence 36788888877654432 3444666677776433 2457999999999988764
No 131
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.37 E-value=0.67 Score=44.48 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=55.8
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFME 204 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~ 204 (210)
...+..+|...|.+.+|.|+..+....+...| ++...+..++...|..+.|.+++++|+-.|.
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g----l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLPFG----LSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHHHhccccCCCcccccccccccccCC----CChhhhhhhhhhcchhccCcccccccchhhh
Confidence 34577799999999999999999999988755 8889999999999999999999999887664
No 132
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.11 E-value=1.7 Score=37.30 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=45.9
Q ss_pred CCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHH-HHHHHHhhCCCCCCceeHHHHH
Q 028383 136 PSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLEN-CKKMIKTFDENGDGRIDFKEFV 200 (210)
Q Consensus 136 ~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~-~~~l~~~~D~~~dG~Is~~eF~ 200 (210)
...+.++++|+.+|+.++|+|+..-++.++...+.. .++.+ +..+=+.+|+..-|.|-..+|.
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~--vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRL--VSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhccc--ccCHHHHHHhcCccChhhcceEEecccc
Confidence 346789999999999999999999999999988744 44433 3333334666666666555554
No 133
>PLN02230 phosphoinositide phospholipase C 4
Probab=78.72 E-value=11 Score=34.88 Aligned_cols=68 Identities=16% Similarity=0.357 Sum_probs=50.9
Q ss_pred CHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCC-CCCCcHHHHHHHHHhhCC-------CCCCceeHHHHHHHHHh
Q 028383 137 SLEEVKDAFDVFDENKDGFIDALELQRVLCILGM-KEGFQLENCKKMIKTFDE-------NGDGRIDFKEFVKFMES 205 (210)
Q Consensus 137 ~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~-~~~ls~~~~~~l~~~~D~-------~~dG~Is~~eF~~~~~~ 205 (210)
...+++.+|..+- ++.+.++.++|..+|..... +...+.+++..++..+-. -+.+.++.+.|..+|..
T Consensus 27 p~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4578999999995 34489999999999998762 223577788888865421 13456999999999875
No 134
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=77.38 E-value=15 Score=25.97 Aligned_cols=54 Identities=15% Similarity=0.269 Sum_probs=43.8
Q ss_pred HHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHH
Q 028383 141 VKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVK 201 (210)
Q Consensus 141 l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~ 201 (210)
+..+|-+++.-++-..+..+++.+|...|.. ..++.++.++.++. |+ +.+|.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E--~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAE--IDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcc--cCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 4467778888888899999999999999977 89999999999873 33 5666554
No 135
>PLN02223 phosphoinositide phospholipase C
Probab=76.43 E-value=11 Score=34.29 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=51.8
Q ss_pred CHHHHHHHhHhhcCCCCCcccHHHHHHHH---HHhCCCCCCcHHHHHHHHHhhCCC--------CCCceeHHHHHHHHHh
Q 028383 137 SLEEVKDAFDVFDENKDGFIDALELQRVL---CILGMKEGFQLENCKKMIKTFDEN--------GDGRIDFKEFVKFMES 205 (210)
Q Consensus 137 ~~~~l~~~F~~~D~d~~G~Is~~El~~~l---~~~g~~~~ls~~~~~~l~~~~D~~--------~dG~Is~~eF~~~~~~ 205 (210)
..+.++.+|..+ .++.|.++.+.|.++| .........+.++++.+++.+-.. ..+.++.+.|..++..
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 457899999999 4778999999999999 544333347788888888865322 2356999999999876
Q ss_pred h
Q 028383 206 S 206 (210)
Q Consensus 206 ~ 206 (210)
.
T Consensus 93 ~ 93 (537)
T PLN02223 93 T 93 (537)
T ss_pred c
Confidence 3
No 136
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=74.76 E-value=41 Score=26.79 Aligned_cols=15 Identities=13% Similarity=0.084 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCCCC
Q 028383 98 DQVETVMTNLTLFCS 112 (210)
Q Consensus 98 ~El~~~l~~lg~~~~ 112 (210)
.+|...+..+|.+|.
T Consensus 61 ~~f~~~~~~lGvdp~ 75 (223)
T PF04157_consen 61 SQFQSMCASLGVDPL 75 (223)
T ss_dssp HHHHHHHHHHT--CH
T ss_pred HHHHHHHHHcCCCcc
Confidence 588889999999865
No 137
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=73.23 E-value=9.3 Score=32.25 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=16.4
Q ss_pred HHhHhhcCCCCCcccHHHHHHHHH
Q 028383 143 DAFDVFDENKDGFIDALELQRVLC 166 (210)
Q Consensus 143 ~~F~~~D~d~~G~Is~~El~~~l~ 166 (210)
.+.+..|+|.+.-||.+||...-.
T Consensus 300 HVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 300 HVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred HHHHhcccchhhhhhHHHHHhhhh
Confidence 345667777777777777766544
No 138
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=72.31 E-value=4.7 Score=27.75 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=24.0
Q ss_pred CCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 153 DGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 153 ~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
||.++..|...+-..+...-++++++...++..+........++.+|.+.+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45555555444333211100145555555555544433344555555555443
No 139
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=71.90 E-value=1.6 Score=34.33 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=39.4
Q ss_pred hHhhcCC-CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028383 145 FDVFDEN-KDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFM 203 (210)
Q Consensus 145 F~~~D~d-~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~ 203 (210)
|-.+|.. .+|++|..||.-+-..+ + .-+.-+..++..+|.|+||.|+.+|+...+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~-i---pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL-I---PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCCc-c---cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 5566643 68999999987543221 1 123455788999999999999999997665
No 140
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=70.05 E-value=33 Score=23.62 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=54.0
Q ss_pred HHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccH
Q 028383 79 CSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDA 158 (210)
Q Consensus 79 ~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~ 158 (210)
++..|..+- ..+...+++.+.+.+|+..+ +.-.+-.......+...+++...=......-|.
T Consensus 6 l~~~f~~i~-----~~V~~~~Wk~laR~LGLse~-------------~I~~i~~~~~~~~eq~~qmL~~W~~~~G~~At~ 67 (96)
T cd08315 6 LRRSFDHFI-----KEVPFDSWNRLMRQLGLSEN-------------EIDVAKANERVTREQLYQMLLTWVNKTGRKASV 67 (96)
T ss_pred HHHHHHHHH-----HHCCHHHHHHHHHHcCCCHH-------------HHHHHHHHCCCCHHHHHHHHHHHHHhhCCCcHH
Confidence 456666663 34778899999999997644 111222222223566666666663222225678
Q ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHH
Q 028383 159 LELQRVLCILGMKEGFQLENCKKMIK 184 (210)
Q Consensus 159 ~El~~~l~~~g~~~~ls~~~~~~l~~ 184 (210)
..|.++|..+|.. ...+.++..+.
T Consensus 68 ~~L~~aL~~~~~~--~~Ae~I~~~l~ 91 (96)
T cd08315 68 NTLLDALEAIGLR--LAKESIQDELI 91 (96)
T ss_pred HHHHHHHHHcccc--cHHHHHHHHHH
Confidence 8999999999976 77777766543
No 141
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=69.43 E-value=5.6 Score=19.44 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=7.5
Q ss_pred cCCCCCcccHHHHH
Q 028383 149 DENKDGFIDALELQ 162 (210)
Q Consensus 149 D~d~~G~Is~~El~ 162 (210)
|.|++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 45566666655544
No 142
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=68.06 E-value=35 Score=23.12 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHH-HhccCCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCC
Q 028383 95 LSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRL-FEEKEPSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEG 173 (210)
Q Consensus 95 Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~-~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ 173 (210)
.+.+.++.+|......... .....+++.++... +.........=..+-+.+ +=|+.+...|.+.|..+|
T Consensus 7 A~~e~I~~AL~~~~~~~~~---~~~~~it~~dL~~~GL~g~~~s~~rR~~l~~~L---~iGy~N~KqllkrLN~f~---- 76 (87)
T PF13331_consen 7 ASPEAIREALENARTEDEE---PKESEITWEDLIELGLIGGPDSKERREKLGEYL---GIGYGNAKQLLKRLNMFG---- 76 (87)
T ss_pred CCHHHHHHHHHHhCccccC---CccCcCCHHHHHHCCCCCCccHHHHHHHHHHHH---CCCCCCHHHHHHHHHHcC----
Confidence 4667788888776543321 11114667776653 211112222223333444 338888888888888877
Q ss_pred CcHHHHHHHH
Q 028383 174 FQLENCKKMI 183 (210)
Q Consensus 174 ls~~~~~~l~ 183 (210)
+|.+++++.+
T Consensus 77 it~~e~~~al 86 (87)
T PF13331_consen 77 ITREEFEEAL 86 (87)
T ss_pred CCHHHHHHHh
Confidence 7777777654
No 143
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=66.43 E-value=19 Score=25.33 Aligned_cols=48 Identities=8% Similarity=0.226 Sum_probs=25.6
Q ss_pred hhcCCCCCcccHHHHHHHHHH----------hCCCCCCcHHHHHHHHHhhCCCCCCceeH
Q 028383 147 VFDENKDGFIDALELQRVLCI----------LGMKEGFQLENCKKMIKTFDENGDGRIDF 196 (210)
Q Consensus 147 ~~D~d~~G~Is~~El~~~l~~----------~g~~~~ls~~~~~~l~~~~D~~~dG~Is~ 196 (210)
.||+..+-+||.++++++... .|.+ +|..-+-.++-+....+...++-
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeD--iT~~iL~QII~E~E~~g~~~lp~ 68 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDD--LTRSILLQIIAEEESGGEPVLST 68 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCch--hHHHHHHHHHHHHHhCCCCCCCH
Confidence 456666667777776666653 1222 45555555555544444444443
No 144
>PLN02952 phosphoinositide phospholipase C
Probab=66.11 E-value=21 Score=33.09 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=41.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhhh
Q 028383 152 KDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSFV 208 (210)
Q Consensus 152 ~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~~ 208 (210)
+.|.++.+++..+.+.+......+..++..++..+-.+ ++.++.++|..++...-.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCC
Confidence 46899999998877766533224678999999998543 467999999999876543
No 145
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=63.44 E-value=15 Score=23.85 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=14.5
Q ss_pred cHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 175 QLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 175 s~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
+......+...++.=..++|+.+||++.|+.
T Consensus 23 ~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 23 PPSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3344444444443334455555555555543
No 146
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.00 E-value=18 Score=33.90 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=52.6
Q ss_pred CCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhC---C---CCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 136 PSLEEVKDAFDVFDENKDGFIDALELQRVLCILG---M---KEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 136 ~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g---~---~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
..+..++..|.++|. ++|.++.+++..++...- . ....+.+....++.+.|.+..|.+.+.++..++..
T Consensus 15 ~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 15 SYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred ChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 346789999999997 999999999999887531 1 01245566678888899999999888887776653
No 147
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=59.72 E-value=17 Score=23.09 Aligned_cols=22 Identities=9% Similarity=0.360 Sum_probs=19.5
Q ss_pred HhhcCCCCCcccHHHHHHHHHH
Q 028383 146 DVFDENKDGFIDALELQRVLCI 167 (210)
Q Consensus 146 ~~~D~d~~G~Is~~El~~~l~~ 167 (210)
+.||+..+.+|+.+++.++...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4689999999999999998875
No 148
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=59.25 E-value=37 Score=21.85 Aligned_cols=29 Identities=7% Similarity=0.226 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHhCCCCCCcHHHHHHHHHhhC
Q 028383 157 DALELQRVLCILGMKEGFQLENCKKMIKTFD 187 (210)
Q Consensus 157 s~~El~~~l~~~g~~~~ls~~~~~~l~~~~D 187 (210)
+.+++..++...|.. +|..++..+++.-|
T Consensus 15 ~d~~m~~if~l~~~~--vs~~el~a~lrke~ 43 (68)
T PF07308_consen 15 KDDDMIEIFALAGFE--VSKAELSAWLRKED 43 (68)
T ss_pred ChHHHHHHHHHcCCc--cCHHHHHHHHCCCC
Confidence 345667777766655 77777777777644
No 149
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.55 E-value=15 Score=27.34 Aligned_cols=63 Identities=22% Similarity=0.326 Sum_probs=42.8
Q ss_pred HHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhh
Q 028383 143 DAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSF 207 (210)
Q Consensus 143 ~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~ 207 (210)
-+|++.+.| |.++..|......-+...-+++.+++..++.....-+.-.|++-.|...|++.+
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~L 96 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHL 96 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 568888654 778877755544433222238888898888877655666788888888887654
No 150
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=57.91 E-value=56 Score=22.08 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=21.6
Q ss_pred cccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhC
Q 028383 155 FIDALELQRVLCILGMKEGFQLENCKKMIKTFD 187 (210)
Q Consensus 155 ~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D 187 (210)
.||.+||..+.+..|.+ ++.++++.++.-+-
T Consensus 14 ~iT~~eLlkyskqy~i~--it~~QA~~I~~~lr 44 (85)
T PF11116_consen 14 NITAKELLKYSKQYNIS--ITKKQAEQIANILR 44 (85)
T ss_pred cCCHHHHHHHHHHhCCC--CCHHHHHHHHHHHh
Confidence 56777777777777765 77777777766653
No 151
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=57.56 E-value=15 Score=33.73 Aligned_cols=40 Identities=8% Similarity=0.146 Sum_probs=33.5
Q ss_pred hhhhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCC
Q 028383 71 EKSQDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFC 111 (210)
Q Consensus 71 ~~~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~ 111 (210)
..-..++.+..+|..+| .|+||.++..|+..+....+..+
T Consensus 309 Ls~~~~~Fl~~~f~~~D-~d~Dg~L~p~El~~LF~~~P~~p 348 (625)
T KOG1707|consen 309 LSPKGYRFLVDVFEKFD-RDNDGALSPEELKDLFSTAPGSP 348 (625)
T ss_pred ccHHHHHHHHHHHHhcc-CCCCCCcCHHHHHHHhhhCCCCC
Confidence 34556788899999999 99999999999999998775443
No 152
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=57.18 E-value=36 Score=19.78 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=20.6
Q ss_pred HHHHHhHhhhccCCC-CcccHHHHHHHHHh
Q 028383 78 LCSKQASCNEKKHDD-ESLSRDQVETVMTN 106 (210)
Q Consensus 78 ~~~~~F~~~D~~d~~-G~Is~~El~~~l~~ 106 (210)
.+-.+|..+-..+|+ .+++..||+.+|..
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 344677776534444 69999999999864
No 153
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=55.78 E-value=57 Score=29.11 Aligned_cols=35 Identities=3% Similarity=-0.102 Sum_probs=24.4
Q ss_pred hhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCC
Q 028383 74 QDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLF 110 (210)
Q Consensus 74 ~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~ 110 (210)
...+.+..++ .+- .-.++.-|.+||...++.....
T Consensus 286 ~~~~~i~~ly-~~~-~~~~~~pt~eEF~e~v~~~~p~ 320 (445)
T PF13608_consen 286 KEEDEIEHLY-MLC-KKHGKLPTEEEFLEYVEEVNPE 320 (445)
T ss_pred HHHHHHHHHH-HHH-HHhCCCCCHHHHHHHHHhcCch
Confidence 3345566777 555 5567889999999998865443
No 154
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=54.63 E-value=90 Score=23.43 Aligned_cols=47 Identities=6% Similarity=0.190 Sum_probs=38.7
Q ss_pred hhhhccchhhhhhhhhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHh
Q 028383 59 SQFESCESRNWDEKSQDFKLCSKQASCNEKKHDDESLSRDQVETVMTN 106 (210)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~ 106 (210)
..++.+....+......++.+.......| ..+.|++|..||+.++-.
T Consensus 51 ~a~~~~~l~gW~q~~~~Lq~L~~rL~~le-~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 51 RALPAPQLDGWHQGMTQLQQLADRLNQLE-EQRGKYMTISELKTAVYQ 97 (148)
T ss_pred hCCCchhhchHHHHHHHHHHHHHHHHHHH-HhcCCceeHHHHHHHHHH
Confidence 34556666778888888999999999999 888889999999998743
No 155
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=54.21 E-value=70 Score=22.10 Aligned_cols=79 Identities=9% Similarity=0.101 Sum_probs=44.7
Q ss_pred CcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCC
Q 028383 93 ESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKE 172 (210)
Q Consensus 93 G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~ 172 (210)
..+...+++.+.+.+|+..+ .++++.. .......+...++++.+=.-+...=+...|..+|+.++..
T Consensus 16 ~~~~~~~wK~faR~lglse~-~Id~I~~-----------~~~~d~~Eq~~qmL~~W~~~~G~~a~~~~Li~aLr~~~l~- 82 (97)
T cd08316 16 DVMTLKDVKKFVRKSGLSEP-KIDEIKL-----------DNPQDTAEQKVQLLRAWYQSHGKTGAYRTLIKTLRKAKLC- 82 (97)
T ss_pred HHcCHHHHHHHHHHcCCCHH-HHHHHHH-----------cCCCChHHHHHHHHHHHHHHhCCCchHHHHHHHHHHccch-
Confidence 45667788888888887644 1222210 0111223444555544422222223458888999998876
Q ss_pred CCcHHHHHHHHHh
Q 028383 173 GFQLENCKKMIKT 185 (210)
Q Consensus 173 ~ls~~~~~~l~~~ 185 (210)
...+.++.++..
T Consensus 83 -~~Ad~I~~~l~~ 94 (97)
T cd08316 83 -TKADKIQDIIEA 94 (97)
T ss_pred -hHHHHHHHHHHh
Confidence 677777776653
No 156
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=53.34 E-value=75 Score=22.15 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=41.7
Q ss_pred CHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhh----CCCCCCceeHHHHHHHHHhh
Q 028383 137 SLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTF----DENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 137 ~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~----D~~~dG~Is~~eF~~~~~~~ 206 (210)
.+..++.-|..+-+ +|+++...|...+ |++ -|.+-+.++|..+ ... .+.|+.+|...++...
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~--dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---GMK--DSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T----S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---CCc--ccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHh
Confidence 46778888988876 7999999999865 654 4667777777654 222 4679999998887653
No 157
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=52.98 E-value=25 Score=24.06 Aligned_cols=73 Identities=7% Similarity=-0.008 Sum_probs=40.8
Q ss_pred HHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcc
Q 028383 77 KLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFI 156 (210)
Q Consensus 77 ~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I 156 (210)
+.+|-+|..+ .|++|.++...|...|+.+-.-|. .+.+...| ...+..++.+|..- .++-.|
T Consensus 3 dKyRylFsli--sd~~g~~~~~~l~~lL~d~lqip~----~vgE~~aF----------g~~e~sv~sCF~~~--~~~~~I 64 (90)
T PF09069_consen 3 DKYRYLFSLI--SDSNGCMDQRKLGLLLHDVLQIPR----AVGEGPAF----------GYIEPSVRSCFQQV--QLSPKI 64 (90)
T ss_dssp HHHHHHHHHH--S-TTS-B-HHHHHHHHHHHHHHHH----HTT-GGGG----------T--HHHHHHHHHHT--TT-S-B
T ss_pred HHHHHHHHHH--cCCCCCCcHHHHHHHHHHHHHHHH----HhCccccc----------cCcHHHHHHHhccc--CCCCcc
Confidence 4577899998 689999999999988864311000 00000000 11356678888865 356678
Q ss_pred cHHHHHHHHHH
Q 028383 157 DALELQRVLCI 167 (210)
Q Consensus 157 s~~El~~~l~~ 167 (210)
+.++|..+|..
T Consensus 65 ~~~~Fl~wl~~ 75 (90)
T PF09069_consen 65 TENQFLDWLMS 75 (90)
T ss_dssp -HHHHHHHHHT
T ss_pred CHHHHHHHHHh
Confidence 88888888764
No 158
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=52.48 E-value=18 Score=26.28 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=20.9
Q ss_pred HHHHhHhhcCCCCCcccHHHHHHHHHH
Q 028383 141 VKDAFDVFDENKDGFIDALELQRVLCI 167 (210)
Q Consensus 141 l~~~F~~~D~d~~G~Is~~El~~~l~~ 167 (210)
+..+...||++++|.|+.-.++.+|..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 667789999999999999999988764
No 159
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=50.33 E-value=16 Score=24.27 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=21.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhC
Q 028383 152 KDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFD 187 (210)
Q Consensus 152 ~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D 187 (210)
..|+||.+++..+|.... ++.+.++.++..+.
T Consensus 18 ~~G~lT~~eI~~~L~~~~----~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD----LDPEQIDEIYDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-------HHHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCccC----CCHHHHHHHHHHHH
Confidence 468999999999887543 77888888888764
No 160
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.30 E-value=24 Score=30.90 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=43.9
Q ss_pred HHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHH
Q 028383 141 VKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVK 201 (210)
Q Consensus 141 l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~ 201 (210)
..++|-.+-+ -+|+||...-+..+.... ++...+-.+++..|.|.||.++-+||.-
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv~sk----lpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMVKSK----LPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHHhcc----CchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 4566766643 468999888777776543 6778889999999999999999999963
No 161
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=46.36 E-value=58 Score=19.01 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028383 158 ALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFM 203 (210)
Q Consensus 158 ~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~ 203 (210)
.+|...+|..+| .++.++...+..... ...++-++.++.-
T Consensus 3 ~~d~~~AL~~LG----y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG----YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT----S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 467888899999 678899999888864 3335677766543
No 162
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.24 E-value=12 Score=36.20 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=54.1
Q ss_pred HHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028383 139 EEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMES 205 (210)
Q Consensus 139 ~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~ 205 (210)
......|+..|..++|.|+..+-...+...| +.+..+-.++...|..+.|.++..+|...++.
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~----L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG----LPDQVLGQIWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc----cchhhhhccccccccccCCccccccccccchH
Confidence 4567889999999999999999999988777 66778888888999999999999999877653
No 163
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=44.69 E-value=85 Score=22.39 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=40.0
Q ss_pred HHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHH
Q 028383 142 KDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVK 201 (210)
Q Consensus 142 ~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~ 201 (210)
-.++-+.-.-|+..+|.+++..+|...|.. .....+..+++.+. | .+.+|.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGve--Vd~~~~~l~~~~L~----G-KdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNAD--VEDDVLDNFFKSLE----G-KTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCC--ccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 345556666677789999999999999976 88888888888873 2 35666654
No 164
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=44.65 E-value=87 Score=27.83 Aligned_cols=79 Identities=9% Similarity=0.090 Sum_probs=48.1
Q ss_pred HHHHHHHhHhhhccCCCCcccHHHHHHHHHh-cCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCC
Q 028383 76 FKLCSKQASCNEKKHDDESLSRDQVETVMTN-LTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDG 154 (210)
Q Consensus 76 ~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~-lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G 154 (210)
++.++.+-+.+| -|.+|.|+.+|=..+|+. +.+..+ ...-.+.|.- .|.
T Consensus 67 ~EAir~iHrqmD-DD~nG~Id~~ESdeFlrEdmky~~~-------------------------~~kr~~~fH~----dD~ 116 (575)
T KOG4403|consen 67 YEAIRDIHRQMD-DDHNGSIDVEESDEFLREDMKYRDS-------------------------TRKRSEKFHG----DDK 116 (575)
T ss_pred HHHHHHHHHhcc-cccCCCcccccchHHHHHHhhcccc-------------------------hhhhhhhccC----Ccc
Confidence 556678888999 899999999987777764 222111 2222335654 346
Q ss_pred cccHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 028383 155 FIDALELQRVLCILGMKEGFQLENCKKMIK 184 (210)
Q Consensus 155 ~Is~~El~~~l~~~g~~~~ls~~~~~~l~~ 184 (210)
.||.+||..+........-..++.++.++.
T Consensus 117 ~ItVedLWeaW~~Sev~nWT~e~tvqWLi~ 146 (575)
T KOG4403|consen 117 HITVEDLWEAWKESEVHNWTNERTVQWLIN 146 (575)
T ss_pred ceeHHHHHHHHHhhhhhcchHHHHHHHHHH
Confidence 789999888877643322122333444444
No 165
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=42.43 E-value=1.8e+02 Score=23.97 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=50.6
Q ss_pred CCCCcccHHHHHH---HHHhcCCCCCcc--cchhh-----ccCCHHHHHHHHhccCCC-HHH----HHHHhHhhcCCCCC
Q 028383 90 HDDESLSRDQVET---VMTNLTLFCSPE--GEELP-----QKLGSRELSRLFEEKEPS-LEE----VKDAFDVFDENKDG 154 (210)
Q Consensus 90 d~~G~Is~~El~~---~l~~lg~~~~~~--~~~l~-----~~id~~EF~~~~~~~~~~-~~~----l~~~F~~~D~d~~G 154 (210)
.-||.++..|+.. ++..++.+.... ..++. ...++.+|+..+...... .+. +..+|.+-= -||
T Consensus 67 kADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~--ADG 144 (267)
T PRK09430 67 KAKGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAF--ADG 144 (267)
T ss_pred hcCCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--hcC
Confidence 3589999999872 233445543310 22222 235788887766542222 222 244444442 348
Q ss_pred cccHHH---HHHHHHHhCCCCCCcHHHHHHHHHhh
Q 028383 155 FIDALE---LQRVLCILGMKEGFQLENCKKMIKTF 186 (210)
Q Consensus 155 ~Is~~E---l~~~l~~~g~~~~ls~~~~~~l~~~~ 186 (210)
.++..| ++++...+| ++..+...+...+
T Consensus 145 ~l~~~E~~~L~~Ia~~Lg----is~~df~~~~~~~ 175 (267)
T PRK09430 145 SLHPNERQVLYVIAEELG----FSRFQFDQLLRMM 175 (267)
T ss_pred CCCHHHHHHHHHHHHHcC----CCHHHHHHHHHHH
Confidence 899888 444444455 7777777776653
No 166
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=41.77 E-value=6.5 Score=28.54 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=3.7
Q ss_pred CcccHHHHHHH
Q 028383 154 GFIDALELQRV 164 (210)
Q Consensus 154 G~Is~~El~~~ 164 (210)
|.|+.+|...+
T Consensus 38 G~v~~~E~~~i 48 (140)
T PF05099_consen 38 GEVDPEEIEAI 48 (140)
T ss_dssp SS--CHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 44444444333
No 167
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=41.05 E-value=41 Score=21.92 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=11.1
Q ss_pred CCCcccHHHHHHHHHH
Q 028383 152 KDGFIDALELQRVLCI 167 (210)
Q Consensus 152 ~~G~Is~~El~~~l~~ 167 (210)
..|++..+||..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 4677777777777654
No 168
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=40.03 E-value=42 Score=21.31 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=31.5
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCC
Q 028383 151 NKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENG 190 (210)
Q Consensus 151 d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~ 190 (210)
+.++-++...+.+.|...|.. ++++.+...++.++.+|
T Consensus 9 ~~~~P~g~~~l~~~L~~~g~~--~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRGEE--LSEEAVRRRLRAMERDG 46 (66)
T ss_pred HcCCCCCHHHHHHHHHhcChh--hhHHHHHHHHHHHHHCC
Confidence 355789999999999988866 88999999999887654
No 169
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=39.96 E-value=51 Score=25.65 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=24.0
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhC
Q 028383 149 DENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFD 187 (210)
Q Consensus 149 D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D 187 (210)
..|.+|+++.+||.+.+..-+.. ++.+++.+++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~--~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLW--VTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT----HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCC--CCHHHHHHHHhhCC
Confidence 45788999999999999886654 88999999988644
No 170
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=37.54 E-value=1.2e+02 Score=21.37 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=40.9
Q ss_pred HHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028383 143 DAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFME 204 (210)
Q Consensus 143 ~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~ 204 (210)
.++-+.-.-|+..+|.+++..+|...|.. .....+..+++.+. | .+.++.+.--.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGve--Ve~~~~~lf~~~L~----G-Kdi~eLIa~g~ 59 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVE--VDDEKLNKVISELE----G-KDVEELIAAGK 59 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCC--ccHHHHHHHHHHHc----C-CCHHHHHHHhH
Confidence 45556666777899999999999999976 77888888888773 2 45666665443
No 171
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=36.26 E-value=94 Score=21.33 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=26.2
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKT 185 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~ 185 (210)
.+.++.+|..+- ..|+..+.+.+.+.+| +|+.+|+.+-..
T Consensus 3 ~~~l~~~f~~i~----~~V~~~~Wk~laR~LG----Lse~~I~~i~~~ 42 (96)
T cd08315 3 QETLRRSFDHFI----KEVPFDSWNRLMRQLG----LSENEIDVAKAN 42 (96)
T ss_pred HhHHHHHHHHHH----HHCCHHHHHHHHHHcC----CCHHHHHHHHHH
Confidence 456777777662 3566777777777777 666666665544
No 172
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=36.12 E-value=1.3e+02 Score=19.76 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=37.1
Q ss_pred cccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhh-cCCCCCcccHHHHHHHHHHhCCC
Q 028383 94 SLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVF-DENKDGFIDALELQRVLCILGMK 171 (210)
Q Consensus 94 ~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~-D~d~~G~Is~~El~~~l~~~g~~ 171 (210)
.++..+++.+.+.||+..+ ++..+ -.......+....+.... ++.|. .-|.+.|.++|..+|..
T Consensus 8 ~v~~~~Wk~laR~LGls~~-~I~~i------------e~~~~~~~eq~~~mL~~W~~k~G~-~At~~~L~~aL~~~~~~ 72 (79)
T cd08784 8 EVPFDQHKRFFRKLGLSDN-EIKVA------------ELDNPQHRDRVYELLRIWRNKEGR-KATLNTLIKALKDLDQR 72 (79)
T ss_pred HCCHHHHHHHHHHcCCCHH-HHHHH------------HHcCCchHHHHHHHHHHHHhccCc-CcHHHHHHHHHHHcccH
Confidence 3677888888999987644 11111 111112334445555444 33443 45788888888888854
No 173
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=35.79 E-value=81 Score=26.96 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=24.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028383 153 DGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFM 203 (210)
Q Consensus 153 ~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~ 203 (210)
+|.||++|-...+..... ..+++.++.+++.++ ||-+||-.++
T Consensus 300 ~G~itReeal~~v~~~d~--~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDG--EFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcc--cccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 566666666666655321 244566666666653 5666666554
No 174
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=35.35 E-value=1.4e+02 Score=21.64 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=41.5
Q ss_pred CHHHHHHHhHhhcCCC--CCcccHHHHHHHHHHhC------CCCCC----------cHHHHHHHHHhhCCCCCCceeHHH
Q 028383 137 SLEEVKDAFDVFDENK--DGFIDALELQRVLCILG------MKEGF----------QLENCKKMIKTFDENGDGRIDFKE 198 (210)
Q Consensus 137 ~~~~l~~~F~~~D~d~--~G~Is~~El~~~l~~~g------~~~~l----------s~~~~~~l~~~~D~~~dG~Is~~e 198 (210)
+...+..+|+....+. +..|+..++..+|..+- .+... ++=-+..++..+|+++.|.|+--.
T Consensus 39 ~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls 118 (127)
T PF09068_consen 39 DLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLS 118 (127)
T ss_dssp -HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHH
T ss_pred eHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhH
Confidence 3455677777766543 46799999999888642 11101 112346788899999999999988
Q ss_pred HHHHHH
Q 028383 199 FVKFME 204 (210)
Q Consensus 199 F~~~~~ 204 (210)
|...+.
T Consensus 119 ~KvaL~ 124 (127)
T PF09068_consen 119 FKVALI 124 (127)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876653
No 175
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=35.17 E-value=1.9e+02 Score=21.60 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=31.6
Q ss_pred cCCCCcccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHh
Q 028383 89 KHDDESLSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDALELQRVLCIL 168 (210)
Q Consensus 89 ~d~~G~Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~ 168 (210)
..+...++-..|..+++..++-... .+...+..+|..+-..+...|+.++|..+|..+
T Consensus 13 ~~~~~~m~~~~F~Kl~kD~~i~d~k----------------------~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 13 KKNGTEMDSKNFAKLCKDCGIIDKK----------------------LTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp TSTSSEEEHHHHHHHHHHTSS--SS----------------------S-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHcCCCCCC----------------------CchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3455678888888888877653221 233445555555433344456666666665543
No 176
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=34.73 E-value=96 Score=29.48 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=47.1
Q ss_pred HHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhhhc
Q 028383 140 EVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSFVE 209 (210)
Q Consensus 140 ~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~~~e 209 (210)
..+.+|+..-+.+.-.+..+++... +.+++++..+..++...++.|+++.|.......+.|
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f---------~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~~E 465 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRF---------MGDEEAERAFSLFEGASDENITRSSFKEWIVNIYRE 465 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhc---------CCHHHHHHHHHhhhhhcccCccHHHHHHHHHHHHHH
Confidence 4567888887777777777776653 567888888888887767779999999988776654
No 177
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=34.00 E-value=1e+02 Score=18.12 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=29.9
Q ss_pred HHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 028383 139 EEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKT 185 (210)
Q Consensus 139 ~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~ 185 (210)
..|+..|.. +.+.+..++..+...+| ++...|...|..
T Consensus 13 ~~Le~~f~~-----~~~P~~~~~~~la~~~~----l~~~qV~~WF~n 50 (59)
T cd00086 13 EELEKEFEK-----NPYPSREEREELAKELG----LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHh-----CCCCCHHHHHHHHHHHC----cCHHHHHHHHHH
Confidence 446666765 56999999999998888 788888887764
No 178
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=33.34 E-value=86 Score=24.28 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=28.1
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhC
Q 028383 150 ENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFD 187 (210)
Q Consensus 150 ~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D 187 (210)
.|.+|++..++|.+.+..-+.. ++.+++.++...-|
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~--~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKW--VTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCC--CCHHHHHHHHHcCC
Confidence 4678999999999988765533 88999998887533
No 179
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=32.57 E-value=1.6e+02 Score=19.86 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=3.0
Q ss_pred CcccHHH
Q 028383 154 GFIDALE 160 (210)
Q Consensus 154 G~Is~~E 160 (210)
|.++..|
T Consensus 14 G~v~~~E 20 (106)
T cd07316 14 GRVSEAE 20 (106)
T ss_pred CCcCHHH
Confidence 4444444
No 180
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=32.55 E-value=1.8e+02 Score=22.75 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=49.4
Q ss_pred cCCCCcccHHHHHHHHHhc---CCCCCcc---cchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccHHHHH
Q 028383 89 KHDDESLSRDQVETVMTNL---TLFCSPE---GEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDALELQ 162 (210)
Q Consensus 89 ~d~~G~Is~~El~~~l~~l---g~~~~~~---~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~ 162 (210)
..-||.|+.+|-..+...+ +.+.... ..++..-+|.++..+.+.....-.+.+...--.+|.| ......=|.
T Consensus 90 AkADG~ID~~Er~~I~~~l~~~g~d~e~~~~l~~eL~~P~d~~~la~~v~~~e~A~evY~aS~laid~d--~~~Er~YL~ 167 (188)
T PF04391_consen 90 AKADGHIDEEERQRIEGALQELGLDAEERAWLQAELAAPLDPDALAAAVTDPEQAAEVYLASLLAIDVD--TFAERAYLD 167 (188)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCCHHHHHHhCCCHHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 4578999999988885544 4433211 4455566888888776632111122333344455655 344444455
Q ss_pred HHHHHhCCCCCCcHHHHHHHH
Q 028383 163 RVLCILGMKEGFQLENCKKMI 183 (210)
Q Consensus 163 ~~l~~~g~~~~ls~~~~~~l~ 183 (210)
.+-..++ +++..+.++=
T Consensus 168 ~LA~aL~----L~~~lv~~le 184 (188)
T PF04391_consen 168 ELAQALG----LDPDLVAQLE 184 (188)
T ss_pred HHHHHhC----cCHHHHHHHH
Confidence 5555566 6666665553
No 181
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=32.10 E-value=1.3e+02 Score=22.35 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=22.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhC
Q 028383 153 DGFIDALELQRVLCILGMKEGFQLENCKKMIKTFD 187 (210)
Q Consensus 153 ~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D 187 (210)
.+.|+.+.|+..|+..=.- .++++-+..+|..+-
T Consensus 46 ~~~Id~egF~~Fm~~yLe~-d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEV-DLPEDLCQHLFLSFQ 79 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT--S--HHHHHHHHHHS-
T ss_pred CCCcCHHHHHHHHHHHHcC-CCCHHHHHHHHHHHh
Confidence 4578899999998875322 288888888888774
No 182
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.32 E-value=65 Score=28.07 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=28.4
Q ss_pred HHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCC
Q 028383 78 LCSKQASCNEKKHDDESLSRDQVETVMTNLTLFC 111 (210)
Q Consensus 78 ~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~ 111 (210)
..|++|+..| ..++|.|+..-++.++..++...
T Consensus 310 q~rR~f~a~d-~~d~nfis~s~~~~vm~~~N~~v 342 (449)
T KOG2871|consen 310 QLRRNFHAYD-PEDNNFISCSGLQIVMTALNRLV 342 (449)
T ss_pred HHHhhhhccC-ccCCCeeecHHHHHHHHHhcccc
Confidence 3579999999 99999999999999998887433
No 183
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=30.90 E-value=1.8e+02 Score=30.46 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=34.0
Q ss_pred HHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcccchh--------hccCCHHHHHHHHhc
Q 028383 81 KQASCNEKKHDDESLSRDQVETVMTNLTLFCSPEGEEL--------PQKLGSRELSRLFEE 133 (210)
Q Consensus 81 ~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~~~~l--------~~~id~~EF~~~~~~ 133 (210)
..|+.+| .||.|.|+..+|..++..-......+.+-+ -++.||++|+.-+.+
T Consensus 4061 dtfkeyd-pdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYD-PDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcC-CCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 3578899 999999999999999976543222121111 134667777765543
No 184
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=29.63 E-value=99 Score=16.63 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=16.4
Q ss_pred cccHHHHHHHHHHhCCCCCCcHHHH
Q 028383 155 FIDALELQRVLCILGMKEGFQLENC 179 (210)
Q Consensus 155 ~Is~~El~~~l~~~g~~~~ls~~~~ 179 (210)
.++..+|+..++..|.+..-+..++
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~G~K~~L 27 (35)
T smart00513 3 KLKVSELKDELKKRGLSTSGTKAEL 27 (35)
T ss_pred cCcHHHHHHHHHHcCCCCCCCHHHH
Confidence 5677888888888887633333333
No 185
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=28.13 E-value=18 Score=19.30 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=11.9
Q ss_pred HHHHHhhCCCCCCceeHH
Q 028383 180 KKMIKTFDENGDGRIDFK 197 (210)
Q Consensus 180 ~~l~~~~D~~~dG~Is~~ 197 (210)
+.++..-|.|+|-+|+.+
T Consensus 2 ~~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIE 19 (30)
T ss_pred hhHhhccccCCCcEEEEe
Confidence 345666677777777654
No 186
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=28.09 E-value=63 Score=17.39 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=10.4
Q ss_pred CCceeHHHHHHHHHh
Q 028383 191 DGRIDFKEFVKFMES 205 (210)
Q Consensus 191 dG~Is~~eF~~~~~~ 205 (210)
.|.|++++++.+..+
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 467777777777654
No 187
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=27.83 E-value=1.6e+02 Score=24.26 Aligned_cols=10 Identities=10% Similarity=0.428 Sum_probs=5.4
Q ss_pred CCcccHHHHH
Q 028383 153 DGFIDALELQ 162 (210)
Q Consensus 153 ~G~Is~~El~ 162 (210)
||.|+..|+.
T Consensus 69 DG~Vse~Ei~ 78 (267)
T PRK09430 69 KGRVTEADIR 78 (267)
T ss_pred CCCcCHHHHH
Confidence 4555555554
No 188
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=27.57 E-value=33 Score=23.46 Aligned_cols=14 Identities=43% Similarity=0.539 Sum_probs=6.6
Q ss_pred CcccHHHHHHHHHH
Q 028383 154 GFIDALELQRVLCI 167 (210)
Q Consensus 154 G~Is~~El~~~l~~ 167 (210)
|.++.+|...+...
T Consensus 17 G~v~~~E~~~i~~~ 30 (111)
T cd07176 17 GDIDDAELQAIEAL 30 (111)
T ss_pred cCCCHHHHHHHHHH
Confidence 45555554444443
No 189
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=27.50 E-value=1.1e+02 Score=16.55 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=14.9
Q ss_pred cccHHHHHHHHHHhCCCCCCcHHH
Q 028383 155 FIDALELQRVLCILGMKEGFQLEN 178 (210)
Q Consensus 155 ~Is~~El~~~l~~~g~~~~ls~~~ 178 (210)
.++..||+..|...|.+..-+..+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~G~K~~ 26 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTSGKKAE 26 (35)
T ss_dssp TSHHHHHHHHHHHTTS-STSSHHH
T ss_pred cCcHHHHHHHHHHCCCCCCCCHHH
Confidence 466788888888887653333333
No 190
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=27.36 E-value=3.7e+02 Score=24.55 Aligned_cols=95 Identities=16% Similarity=0.076 Sum_probs=61.5
Q ss_pred hhhhhhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCCCCCcc--cchh-----h-ccCCHHHHHHHHhccCCCHHH
Q 028383 69 WDEKSQDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTLFCSPE--GEEL-----P-QKLGSRELSRLFEEKEPSLEE 140 (210)
Q Consensus 69 ~~~~~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~~~~~~--~~~l-----~-~~id~~EF~~~~~~~~~~~~~ 140 (210)
+....+.++....+|...- +.+.-.+|..++..++.++|.....+ ..-. . ..++|..++..+.....+.+.
T Consensus 477 ~tl~~q~l~~~t~~f~h~l-kk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~gv~yl~v~~~i~sel~D~d~ 555 (612)
T COG5069 477 LTLVWQVLRSNTALFNHVL-KKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVSGVFYLDVLKGIHSELVDYDL 555 (612)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccccchHHHHHHHHhhhhcChhh
Confidence 3344566777778888887 55556799999999999998765521 1111 1 135677777776665566677
Q ss_pred HHHHhHhhcCCCCCc---ccHHHHHHH
Q 028383 141 VKDAFDVFDENKDGF---IDALELQRV 164 (210)
Q Consensus 141 l~~~F~~~D~d~~G~---Is~~El~~~ 164 (210)
++.+|..+|.=.+|. |+.+.++..
T Consensus 556 v~~~~~~f~diad~rsl~is~~ilRs~ 582 (612)
T COG5069 556 VTRGFTEFDDIADARSLAISSKILRSL 582 (612)
T ss_pred hhhhHHHHHHhhhhhhhhccHHHHHHh
Confidence 888888886444444 444444443
No 191
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=25.48 E-value=1.7e+02 Score=18.58 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=26.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhh
Q 028383 153 DGFIDALELQRVLCILGMKEGFQLENCKKMIKTF 186 (210)
Q Consensus 153 ~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~ 186 (210)
+--|+.+-++..+..+|.+ .|+..+..+++.+
T Consensus 29 NPpine~mir~M~~QMG~k--pSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRK--PSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHH
Confidence 4578889999999999976 8899998888765
No 192
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=25.07 E-value=2.6e+02 Score=19.92 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=35.5
Q ss_pred HhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHH
Q 028383 144 AFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFV 200 (210)
Q Consensus 144 ~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~ 200 (210)
+|-+.-.-++..+|.+++..+|...|.. .....+..+++.+.. .+.+|.+
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGve--vd~~~~~~f~~~L~g-----K~i~eLI 55 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGAD--ADDDRIELLLSEVKG-----KDITELI 55 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCc--ccHHHHHHHHHHHcC-----CCHHHHH
Confidence 3444444566779999999999999976 777778888877732 3455555
No 193
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.99 E-value=82 Score=32.84 Aligned_cols=38 Identities=8% Similarity=0.117 Sum_probs=33.7
Q ss_pred hhhhhHHHHHHHhHhhhccCCCCcccHHHHHHHHHhcCC
Q 028383 71 EKSQDFKLCSKQASCNEKKHDDESLSRDQVETVMTNLTL 109 (210)
Q Consensus 71 ~~~~~~~~~~~~F~~~D~~d~~G~Is~~El~~~l~~lg~ 109 (210)
.....+++|++++..+| .+..|.|...++...++.+..
T Consensus 1411 Ls~~d~~~F~~vW~~fD-peatg~I~~~~~~~~lr~L~p 1448 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFD-PEATQEIPYSDLSAFLRSLDP 1448 (1592)
T ss_pred CCcccHHHHHHHHHhcC-hhhheeeeHhhHHHHHHhcCC
Confidence 45677899999999999 999999999999999998743
No 194
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=24.99 E-value=1.3e+02 Score=20.30 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHhCCCCCCcHHHHHHHHHhh
Q 028383 156 IDALELQRVLCILGMKEGFQLENCKKMIKTF 186 (210)
Q Consensus 156 Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~ 186 (210)
|+.++++++....... +++++++.+...+
T Consensus 1 i~~~~v~~lA~La~L~--l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLE--LSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCC--CCHHHHHHHHHHH
Confidence 4667777777766655 7777776655543
No 195
>PF00714 IFN-gamma: Interferon gamma This family is a subset of the SCOP family.; InterPro: IPR002069 Interferon gamma (IFN-gamma) is produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma shows antiviral activity and has important immunoregulatory functions. It is a potent activator of microphages and had antiproliferative effects on transformed cells. It can potentiate the antiviral and antitumor effects of the type I interferons. The crystal structures of a number IFN-gamma proteins have been solved, including bovine interferon-gamma at 2.0-A [] and human IFN-gamma at 2.9-A [].; GO: 0005133 interferon-gamma receptor binding, 0006955 immune response, 0005576 extracellular region; PDB: 1FG9_A 1FYH_D 1EKU_B 3BES_L 1RFB_A 1D9G_A 1D9C_B.
Probab=24.88 E-value=2.8 Score=30.89 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=5.6
Q ss_pred CccchhHHHhhccCCCC
Q 028383 1 MAANSFYCLITMQKSPG 17 (210)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (210)
|+.+..||+.+++++-.
T Consensus 2 l~~s~~y~~~~l~~eIe 18 (138)
T PF00714_consen 2 LGSSGCYCQSNLIKEIE 18 (138)
T ss_dssp ---------HCHHHHHH
T ss_pred cccccccchhhHHHHHH
Confidence 57899999999877643
No 196
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=24.78 E-value=83 Score=23.98 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=33.5
Q ss_pred HhccCCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhh
Q 028383 131 FEEKEPSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTF 186 (210)
Q Consensus 131 ~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~ 186 (210)
+..+..+...+..|++.+-.++...++..+|.+.+ |....+|+++++..+..+
T Consensus 77 ~~gklkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c---GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 77 VDGKLKTNLQLDAALKYLKSNPSEPIDVAEFEKAC---GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HTTS--SHHHHHHHHHHHHHHGG-G--HHHHHHTT---TTT----HHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHc---CCCeEECHHHHHHHHHHH
Confidence 33455678889999999976666689999999865 433448999998877764
No 197
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=24.30 E-value=1.4e+02 Score=23.55 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=52.2
Q ss_pred CCCcccHHHHHHHHHhcCCCCCcc-cchhh----cc--CCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCCcccHHHHHH
Q 028383 91 DDESLSRDQVETVMTNLTLFCSPE-GEELP----QK--LGSRELSRLFEEKEPSLEEVKDAFDVFDENKDGFIDALELQR 163 (210)
Q Consensus 91 ~~G~Is~~El~~~l~~lg~~~~~~-~~~l~----~~--id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~ 163 (210)
.||.++.-=+...+...+.++..- ..-+. .. +-..+|+..-.++.....+.++-=..++.+. .-..+|+..
T Consensus 10 ~DGlv~~~~lv~G~a~a~~~~~~vl~~gla~~iAga~SMa~G~yls~~se~~~~~~e~~re~~e~~~~p--e~e~~el~~ 87 (213)
T PF01988_consen 10 NDGLVTTFGLVAGVAGAGVSSSVVLLAGLAGLIAGAISMAVGEYLSVKSERDLYEAEREREEWELENNP--EEEKEELVE 87 (213)
T ss_pred cchHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHhCh--HhHHHHHHH
Confidence 357777666665555555432200 00000 11 2356676665544333334444333343333 344668999
Q ss_pred HHHHhCCCCCCcHHHHHHHHHhhCCCCCC
Q 028383 164 VLCILGMKEGFQLENCKKMIKTFDENGDG 192 (210)
Q Consensus 164 ~l~~~g~~~~ls~~~~~~l~~~~D~~~dG 192 (210)
+++..| +++++.+.+.+.+-.+++.
T Consensus 88 iy~~~G----l~~~~a~~i~~~l~~~~~~ 112 (213)
T PF01988_consen 88 IYRAKG----LSEEDAEEIAEELSKDKDA 112 (213)
T ss_pred HHHHCC----CCHHHHHHHHHHHHhCchH
Confidence 998877 7788888888887666553
No 198
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=24.27 E-value=3.5e+02 Score=21.44 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=12.7
Q ss_pred cCCCCcccHHHHHHHHH
Q 028383 89 KHDDESLSRDQVETVMT 105 (210)
Q Consensus 89 ~d~~G~Is~~El~~~l~ 105 (210)
.|=||+||.++....+.
T Consensus 8 sDFDGTITl~Ds~~~it 24 (220)
T COG4359 8 SDFDGTITLNDSNDYIT 24 (220)
T ss_pred ecCCCceEecchhHHHH
Confidence 34579999988877664
No 199
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=24.19 E-value=1.4e+02 Score=21.06 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=4.3
Q ss_pred CHHHHHHHhH
Q 028383 137 SLEEVKDAFD 146 (210)
Q Consensus 137 ~~~~l~~~F~ 146 (210)
+.++++.+|-
T Consensus 80 ~~dElrai~~ 89 (112)
T PRK14981 80 TRDELRAIFA 89 (112)
T ss_pred CHHHHHHHHH
Confidence 3444444443
No 200
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=24.05 E-value=2.2e+02 Score=18.82 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHhcCCCCCcccchhhccCCHHHHHHHHhccCCCHHHHHHHhHhhcCCCCC--cccHHHHHHHHHHhCCC
Q 028383 95 LSRDQVETVMTNLTLFCSPEGEELPQKLGSRELSRLFEEKEPSLEEVKDAFDVFDENKDG--FIDALELQRVLCILGMK 171 (210)
Q Consensus 95 Is~~El~~~l~~lg~~~~~~~~~l~~~id~~EF~~~~~~~~~~~~~l~~~F~~~D~d~~G--~Is~~El~~~l~~~g~~ 171 (210)
++..+++.+.+.+|+..+ .++.+. .......+...++++..= ...| .-+...|.++|+.++..
T Consensus 9 v~~~~wk~~~R~LGlse~-~Id~ie------------~~~~~~~Eq~yqmL~~W~-~~~g~~~At~~~L~~aLr~~~l~ 73 (80)
T cd08313 9 VPPRRWKEFVRRLGLSDN-EIERVE------------LDHRRCRDAQYQMLKVWK-ERGPRPYATLQHLLSVLRDMELV 73 (80)
T ss_pred CCHHHHHHHHHHcCCCHH-HHHHHH------------HhCCChHHHHHHHHHHHH-HhcCCCcchHHHHHHHHHHcCcH
Confidence 667788899999997644 111111 112233455556665553 3333 57888888888887754
No 201
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=23.96 E-value=1.7e+02 Score=19.23 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=13.1
Q ss_pred CHHHHHHHhHhhcCC-CCCcccHHHHHHH
Q 028383 137 SLEEVKDAFDVFDEN-KDGFIDALELQRV 164 (210)
Q Consensus 137 ~~~~l~~~F~~~D~d-~~G~Is~~El~~~ 164 (210)
+.+.++.++..++.+ --|.++.+||.++
T Consensus 57 ~~~~i~~~l~~~~~~~~~~~~~~~el~~~ 85 (86)
T PF10437_consen 57 DREAIKEALNSVDLEDYFGNISVEELIEL 85 (86)
T ss_dssp SHHHHHHHHHHCHGGGTCCTHHHHHHHHH
T ss_pred CHHHHHHHHHHhCHhhccccCCHHHHHHh
Confidence 345555555555332 2244555555443
No 202
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=22.21 E-value=2.6e+02 Score=18.89 Aligned_cols=47 Identities=17% Similarity=0.051 Sum_probs=29.6
Q ss_pred CcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 028383 154 GFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKF 202 (210)
Q Consensus 154 G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~dG~Is~~eF~~~ 202 (210)
-.|+-.+++..|.....- .+..+...+=..+|.-.||.||-=||--+
T Consensus 21 ~IVPW~~F~~~L~~~h~~--~~~~~~~aLk~TiDlT~n~~iS~FeFdvF 67 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPI--SSGLEAMALKSTIDLTCNDYISNFEFDVF 67 (85)
T ss_dssp SEEEHHHHHHHHHHHS----SSHHHHHHHHHHH-TTSSSEEEHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCC--CchHHHHHHHHHHhcccCCccchhhhHHH
Confidence 457788888888776421 23345556666678888888887666543
No 203
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.12 E-value=65 Score=33.55 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=48.1
Q ss_pred CCCHHHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCC--cHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q 028383 135 EPSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGF--QLENCKKMIKTFDENGDGRIDFKEFVKFMESS 206 (210)
Q Consensus 135 ~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~l--s~~~~~~l~~~~D~~~dG~Is~~eF~~~~~~~ 206 (210)
..+.+...+++..+|++..|+|...++...++.+.-+-++ ..+. +.+--.+-...+|.|++.+=+-++.+.
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 3456778899999999999999999999999986432111 1111 222223445567788888777766543
No 204
>PRK00523 hypothetical protein; Provisional
Probab=22.02 E-value=2.2e+02 Score=18.62 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=26.8
Q ss_pred CCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhh
Q 028383 153 DGFIDALELQRVLCILGMKEGFQLENCKKMIKTF 186 (210)
Q Consensus 153 ~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~ 186 (210)
+--|+.+-++..+..+|.+ .|+..++.+++.+
T Consensus 37 NPpine~mir~M~~QMGqK--PSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRK--PSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHH
Confidence 4578888899999999976 8899999888876
No 205
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=22.00 E-value=1.8e+02 Score=17.07 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=28.2
Q ss_pred HHHHHHhHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 028383 139 EEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIK 184 (210)
Q Consensus 139 ~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~ 184 (210)
+.+..+-..|.. +.+++.++...+-..+| ++...|...|.
T Consensus 10 ~q~~~L~~~f~~--~~~p~~~~~~~la~~l~----l~~~~V~~WF~ 49 (57)
T PF00046_consen 10 EQLKVLEEYFQE--NPYPSKEEREELAKELG----LTERQVKNWFQ 49 (57)
T ss_dssp HHHHHHHHHHHH--SSSCHHHHHHHHHHHHT----SSHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hcccccccccccccccc----ccccccccCHH
Confidence 333344444432 67899999999888888 77888887775
No 206
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=21.93 E-value=38 Score=26.81 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=22.9
Q ss_pred HHHHHHHhHhhcCCCCCcccHHHHHHHH
Q 028383 138 LEEVKDAFDVFDENKDGFIDALELQRVL 165 (210)
Q Consensus 138 ~~~l~~~F~~~D~d~~G~Is~~El~~~l 165 (210)
+.-...-|...|.|++|+|+.+|....+
T Consensus 221 e~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 221 EHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred HhhchhhhhcccCCCCCceeHHHhhccc
Confidence 3446677899999999999999987754
No 207
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=21.53 E-value=1.7e+02 Score=19.70 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=21.3
Q ss_pred cccHHHHHHHHHHhCCCCCCcHHHHHHHHHhh
Q 028383 155 FIDALELQRVLCILGMKEGFQLENCKKMIKTF 186 (210)
Q Consensus 155 ~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~ 186 (210)
.|+.++++++....... +++++++.+...+
T Consensus 2 ~i~~e~i~~la~La~l~--l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLE--LSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCC--CCHHHHHHHHHHH
Confidence 47788888888777765 7887776665544
No 208
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=20.09 E-value=1.3e+02 Score=18.03 Aligned_cols=32 Identities=25% Similarity=0.494 Sum_probs=24.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhCCCC
Q 028383 152 KDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENG 190 (210)
Q Consensus 152 ~~G~Is~~El~~~l~~~g~~~~ls~~~~~~l~~~~D~~~ 190 (210)
..|.|+..+++..+ | +|-..+-.+++.+|..+
T Consensus 7 ~~~~itv~~~rd~l---g----~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 7 KNGEITVAEFRDLL---G----LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TTSSBEHHHHHHHH---T----S-HHHHHHHHHHHHHTT
T ss_pred cCCcCcHHHHHHHH---C----ccHHHHHHHHHHHhccC
Confidence 37899999999987 3 67777888888887554
Done!