Query 028385
Match_columns 210
No_of_seqs 228 out of 2250
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 10:41:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 4.3E-24 9.3E-29 165.6 11.6 109 7-123 51-162 (238)
2 PF01209 Ubie_methyltran: ubiE 99.9 1.9E-24 4.1E-29 168.8 7.8 128 7-146 47-178 (233)
3 COG2227 UbiG 2-polyprenyl-3-me 99.9 4.9E-23 1.1E-27 157.3 4.8 170 7-193 59-243 (243)
4 PF08241 Methyltransf_11: Meth 99.9 1.7E-21 3.8E-26 131.3 10.7 95 12-115 1-95 (95)
5 PLN02396 hexaprenyldihydroxybe 99.9 2.6E-21 5.6E-26 157.4 9.3 169 8-195 132-319 (322)
6 PLN02233 ubiquinone biosynthes 99.8 1.6E-20 3.5E-25 149.5 12.8 108 7-122 73-187 (261)
7 KOG1540 Ubiquinone biosynthesi 99.8 1.3E-19 2.8E-24 139.0 12.2 115 6-128 99-226 (296)
8 KOG1271 Methyltransferases [Ge 99.8 1.1E-19 2.4E-24 132.7 10.6 142 10-155 70-217 (227)
9 PLN02244 tocopherol O-methyltr 99.8 2.8E-19 6.1E-24 147.4 12.4 106 6-119 117-225 (340)
10 PF12847 Methyltransf_18: Meth 99.8 8.1E-19 1.8E-23 122.1 12.5 104 8-117 2-111 (112)
11 PTZ00098 phosphoethanolamine N 99.8 8.1E-19 1.8E-23 139.9 13.3 109 6-120 51-159 (263)
12 PRK11207 tellurite resistance 99.8 1.4E-18 3.1E-23 132.9 12.8 104 7-118 30-135 (197)
13 KOG4300 Predicted methyltransf 99.8 2.8E-19 6.1E-24 133.1 8.2 110 6-122 75-187 (252)
14 PF13847 Methyltransf_31: Meth 99.8 1E-18 2.3E-23 128.3 10.9 105 7-119 3-112 (152)
15 PRK11036 putative S-adenosyl-L 99.8 6.1E-19 1.3E-23 140.2 10.0 106 7-120 44-152 (255)
16 PRK10258 biotin biosynthesis p 99.8 1.8E-18 4E-23 137.1 12.0 102 7-120 42-143 (251)
17 TIGR02752 MenG_heptapren 2-hep 99.8 3.5E-18 7.7E-23 133.8 12.4 108 7-122 45-156 (231)
18 TIGR00477 tehB tellurite resis 99.8 5.5E-18 1.2E-22 129.4 12.2 105 6-118 29-134 (195)
19 PF13649 Methyltransf_25: Meth 99.8 1.1E-18 2.4E-23 119.5 7.2 95 11-111 1-101 (101)
20 PRK14103 trans-aconitate 2-met 99.8 5.1E-18 1.1E-22 134.9 10.8 99 6-118 28-127 (255)
21 PRK05785 hypothetical protein; 99.8 5.2E-18 1.1E-22 132.3 10.6 100 8-123 52-151 (226)
22 KOG1270 Methyltransferases [Co 99.8 2.4E-18 5.1E-23 132.7 7.6 151 9-174 91-263 (282)
23 PRK01683 trans-aconitate 2-met 99.7 1.3E-17 2.9E-22 132.7 11.8 100 6-117 30-130 (258)
24 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.4E-17 3E-22 131.8 11.7 104 7-118 56-165 (247)
25 PRK15068 tRNA mo(5)U34 methylt 99.7 1.2E-17 2.6E-22 136.6 11.4 102 8-118 123-227 (322)
26 PLN02336 phosphoethanolamine N 99.7 2.1E-17 4.6E-22 142.3 12.4 105 7-119 266-371 (475)
27 TIGR03587 Pse_Me-ase pseudamin 99.7 4.5E-17 9.8E-22 125.1 12.8 103 7-121 43-146 (204)
28 PLN02490 MPBQ/MSBQ methyltrans 99.7 2.8E-17 6.1E-22 134.4 12.0 106 7-121 113-219 (340)
29 TIGR00740 methyltransferase, p 99.7 4.5E-17 9.8E-22 128.3 12.4 105 7-119 53-163 (239)
30 PRK12335 tellurite resistance 99.7 5.5E-17 1.2E-21 131.1 12.6 103 7-117 120-223 (287)
31 TIGR02072 BioC biotin biosynth 99.7 4.7E-17 1E-21 127.7 11.7 103 8-120 35-138 (240)
32 PF13489 Methyltransf_23: Meth 99.7 2.5E-17 5.5E-22 121.5 9.5 100 5-121 20-119 (161)
33 TIGR00452 methyltransferase, p 99.7 5.2E-17 1.1E-21 131.8 11.3 102 8-118 122-226 (314)
34 PF08242 Methyltransf_12: Meth 99.7 7.4E-19 1.6E-23 119.8 0.4 95 12-113 1-99 (99)
35 PRK11873 arsM arsenite S-adeno 99.7 7E-17 1.5E-21 129.5 11.7 105 7-119 77-185 (272)
36 PF03848 TehB: Tellurite resis 99.7 6.3E-17 1.4E-21 121.9 10.7 107 4-118 27-134 (192)
37 TIGR03840 TMPT_Se_Te thiopurin 99.7 1.2E-16 2.7E-21 123.3 12.6 107 7-119 34-154 (213)
38 PF05401 NodS: Nodulation prot 99.7 5.7E-17 1.2E-21 121.0 9.7 109 4-119 40-148 (201)
39 PRK00107 gidB 16S rRNA methylt 99.7 2.3E-16 5E-21 119.3 13.1 117 8-138 46-165 (187)
40 COG4106 Tam Trans-aconitate me 99.7 2.9E-17 6.3E-22 123.3 7.9 102 4-117 27-129 (257)
41 COG2230 Cfa Cyclopropane fatty 99.7 1.5E-16 3.2E-21 125.8 11.0 110 5-123 70-182 (283)
42 smart00828 PKS_MT Methyltransf 99.7 1.3E-16 2.9E-21 124.3 10.3 101 10-119 2-106 (224)
43 smart00138 MeTrc Methyltransfe 99.7 2.3E-16 5E-21 125.8 11.8 105 7-117 99-242 (264)
44 TIGR00138 gidB 16S rRNA methyl 99.7 5.2E-16 1.1E-20 117.0 12.1 117 8-137 43-162 (181)
45 PRK08317 hypothetical protein; 99.7 5.1E-16 1.1E-20 121.7 12.5 105 6-118 18-125 (241)
46 PF02353 CMAS: Mycolic acid cy 99.7 2.8E-16 6.2E-21 125.4 10.7 107 6-122 61-171 (273)
47 PLN02336 phosphoethanolamine N 99.7 7.3E-16 1.6E-20 132.7 12.6 105 7-118 37-143 (475)
48 PRK13255 thiopurine S-methyltr 99.7 1.8E-15 3.8E-20 117.3 13.0 105 8-118 38-156 (218)
49 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 1.5E-15 3.2E-20 118.0 12.5 108 7-122 39-148 (223)
50 PRK06202 hypothetical protein; 99.7 1.7E-15 3.6E-20 118.8 12.4 107 6-121 59-170 (232)
51 PRK06922 hypothetical protein; 99.7 1.2E-15 2.6E-20 132.3 12.5 112 7-118 418-538 (677)
52 PRK00216 ubiE ubiquinone/menaq 99.7 1.7E-15 3.7E-20 118.8 12.4 108 7-122 51-163 (239)
53 PRK11705 cyclopropane fatty ac 99.7 1.7E-15 3.6E-20 126.6 13.0 105 7-121 167-271 (383)
54 PRK11088 rrmA 23S rRNA methylt 99.7 1.7E-15 3.6E-20 121.6 12.1 96 7-120 85-184 (272)
55 TIGR02469 CbiT precorrin-6Y C5 99.6 6.2E-15 1.3E-19 104.1 12.1 100 8-117 20-122 (124)
56 PRK00121 trmB tRNA (guanine-N( 99.6 1.7E-15 3.7E-20 116.3 8.7 112 8-119 41-158 (202)
57 TIGR00537 hemK_rel_arch HemK-r 99.6 7.8E-15 1.7E-19 110.6 11.7 109 8-120 20-143 (179)
58 PF05175 MTS: Methyltransferas 99.6 6.5E-15 1.4E-19 110.1 10.7 108 7-118 31-141 (170)
59 PRK15001 SAM-dependent 23S rib 99.6 1.4E-14 3E-19 120.2 12.0 106 8-117 229-340 (378)
60 PF07021 MetW: Methionine bios 99.6 8E-15 1.7E-19 109.3 9.4 97 8-120 14-111 (193)
61 TIGR00091 tRNA (guanine-N(7)-) 99.6 7.4E-15 1.6E-19 112.1 8.9 114 7-120 16-135 (194)
62 TIGR02021 BchM-ChlM magnesium 99.6 2E-14 4.4E-19 111.7 11.5 99 7-115 55-156 (219)
63 PRK13944 protein-L-isoaspartat 99.6 2.2E-14 4.7E-19 110.5 11.5 97 7-117 72-173 (205)
64 PLN03075 nicotianamine synthas 99.6 2.2E-14 4.9E-19 114.7 11.5 104 7-117 123-233 (296)
65 TIGR02716 C20_methyl_CrtF C-20 99.6 3.1E-14 6.8E-19 116.1 12.3 105 6-119 148-256 (306)
66 PRK09489 rsmC 16S ribosomal RN 99.6 4.2E-14 9.2E-19 116.4 12.5 106 8-118 197-304 (342)
67 PRK13942 protein-L-isoaspartat 99.6 3.7E-14 8.1E-19 109.7 11.5 97 7-117 76-176 (212)
68 COG4123 Predicted O-methyltran 99.6 7.8E-14 1.7E-18 108.6 13.2 111 7-117 44-170 (248)
69 PF13659 Methyltransf_26: Meth 99.6 1.3E-14 2.9E-19 101.6 8.1 109 9-117 2-115 (117)
70 PLN02232 ubiquinone biosynthes 99.6 1.7E-14 3.7E-19 106.8 8.3 83 34-124 1-88 (160)
71 PRK13256 thiopurine S-methyltr 99.6 1E-13 2.2E-18 107.3 12.9 106 7-119 43-165 (226)
72 PRK05134 bifunctional 3-demeth 99.6 3.8E-14 8.3E-19 111.1 10.7 106 6-119 47-153 (233)
73 TIGR01983 UbiG ubiquinone bios 99.6 4.2E-14 9.1E-19 110.2 10.9 105 7-120 45-152 (224)
74 PF08003 Methyltransf_9: Prote 99.6 5E-14 1.1E-18 111.8 11.1 103 7-118 115-220 (315)
75 TIGR00406 prmA ribosomal prote 99.5 6.3E-14 1.4E-18 113.2 11.6 99 8-119 160-261 (288)
76 KOG1541 Predicted protein carb 99.5 6.1E-14 1.3E-18 105.8 10.4 118 2-124 45-167 (270)
77 PRK08287 cobalt-precorrin-6Y C 99.5 1.1E-13 2.3E-18 105.1 11.9 99 7-118 31-132 (187)
78 TIGR00080 pimt protein-L-isoas 99.5 7.2E-14 1.6E-18 108.4 11.1 97 7-117 77-177 (215)
79 PRK04266 fibrillarin; Provisio 99.5 1.6E-13 3.5E-18 106.8 12.7 101 6-116 71-175 (226)
80 PRK14967 putative methyltransf 99.5 8.4E-14 1.8E-18 108.6 11.0 109 8-118 37-160 (223)
81 PRK11188 rrmJ 23S rRNA methylt 99.5 3.7E-13 8.1E-18 103.8 13.7 103 8-121 52-169 (209)
82 PRK07580 Mg-protoporphyrin IX 99.5 1.5E-13 3.2E-18 107.4 11.5 96 7-112 63-161 (230)
83 PLN02585 magnesium protoporphy 99.5 1.6E-13 3.4E-18 111.6 11.8 96 7-113 144-246 (315)
84 cd02440 AdoMet_MTases S-adenos 99.5 3.3E-13 7.2E-18 91.2 11.6 100 10-116 1-103 (107)
85 TIGR03533 L3_gln_methyl protei 99.5 3.6E-13 7.9E-18 108.5 13.2 108 7-116 121-250 (284)
86 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.6E-13 3.6E-18 113.5 11.3 110 9-120 124-238 (390)
87 TIGR02081 metW methionine bios 99.5 1E-13 2.3E-18 105.8 9.1 90 8-109 14-104 (194)
88 PRK00312 pcm protein-L-isoaspa 99.5 2.9E-13 6.2E-18 104.8 11.6 99 5-118 76-176 (212)
89 KOG2361 Predicted methyltransf 99.5 9.6E-14 2.1E-18 106.1 7.9 108 10-122 74-188 (264)
90 TIGR03438 probable methyltrans 99.5 1.9E-13 4E-18 111.2 10.0 103 8-116 64-176 (301)
91 PRK11805 N5-glutamine S-adenos 99.5 6.9E-13 1.5E-17 107.9 12.7 106 9-116 135-262 (307)
92 COG2264 PrmA Ribosomal protein 99.5 2.2E-13 4.7E-18 108.8 9.5 101 7-119 162-265 (300)
93 PRK14968 putative methyltransf 99.5 9.2E-13 2E-17 99.7 12.2 109 7-118 23-149 (188)
94 PRK00517 prmA ribosomal protei 99.5 3.9E-13 8.5E-18 106.5 10.5 97 7-119 119-215 (250)
95 TIGR01177 conserved hypothetic 99.5 7.6E-13 1.6E-17 108.9 12.6 112 7-120 182-297 (329)
96 PF03291 Pox_MCEL: mRNA cappin 99.5 4.6E-13 1E-17 109.6 11.0 110 7-119 62-188 (331)
97 PF05724 TPMT: Thiopurine S-me 99.5 3E-13 6.6E-18 104.7 9.2 105 7-117 37-155 (218)
98 PRK00377 cbiT cobalt-precorrin 99.5 8.5E-13 1.8E-17 101.1 11.2 100 7-116 40-144 (198)
99 TIGR03534 RF_mod_PrmC protein- 99.5 8.3E-13 1.8E-17 104.5 11.5 108 8-117 88-217 (251)
100 PRK14966 unknown domain/N5-glu 99.4 1.2E-12 2.7E-17 109.1 12.2 120 8-128 252-393 (423)
101 KOG2352 Predicted spermine/spe 99.4 1.7E-12 3.8E-17 108.5 13.0 184 9-204 50-239 (482)
102 TIGR00536 hemK_fam HemK family 99.4 1E-12 2.3E-17 106.0 11.4 107 9-117 116-244 (284)
103 KOG3010 Methyltransferase [Gen 99.4 2.4E-13 5.1E-18 104.0 7.0 105 5-119 31-139 (261)
104 PRK09328 N5-glutamine S-adenos 99.4 2.2E-12 4.7E-17 103.6 12.9 109 6-116 107-237 (275)
105 PRK07402 precorrin-6B methylas 99.4 1.2E-12 2.7E-17 100.0 11.0 101 7-119 40-144 (196)
106 PHA03411 putative methyltransf 99.4 1.6E-12 3.6E-17 102.6 11.7 110 8-122 65-188 (279)
107 COG2813 RsmC 16S RNA G1207 met 99.4 3.8E-12 8.3E-17 101.2 12.8 108 9-121 160-270 (300)
108 PF06325 PrmA: Ribosomal prote 99.4 9.8E-13 2.1E-17 105.8 9.3 98 8-119 162-261 (295)
109 TIGR03704 PrmC_rel_meth putati 99.4 4E-12 8.8E-17 100.7 12.7 109 8-117 87-216 (251)
110 PTZ00146 fibrillarin; Provisio 99.4 3.5E-12 7.5E-17 101.8 11.9 101 6-116 131-236 (293)
111 PRK00811 spermidine synthase; 99.4 2.3E-12 5E-17 103.8 10.2 106 8-116 77-190 (283)
112 smart00650 rADc Ribosomal RNA 99.4 5.1E-12 1.1E-16 94.4 11.3 99 7-115 13-111 (169)
113 PRK01544 bifunctional N5-gluta 99.4 4.1E-12 8.9E-17 109.9 11.4 106 8-115 139-267 (506)
114 TIGR00438 rrmJ cell division p 99.4 5.2E-12 1.1E-16 95.9 10.6 104 7-119 32-148 (188)
115 PHA03412 putative methyltransf 99.4 7.3E-12 1.6E-16 96.9 10.9 100 8-112 50-158 (241)
116 PRK13943 protein-L-isoaspartat 99.4 6E-12 1.3E-16 102.7 11.0 97 7-117 80-180 (322)
117 PF05148 Methyltransf_8: Hypot 99.4 6.2E-12 1.3E-16 94.9 10.1 139 8-207 73-213 (219)
118 COG3963 Phospholipid N-methylt 99.4 3.6E-11 7.9E-16 87.1 13.3 106 6-119 47-158 (194)
119 COG2518 Pcm Protein-L-isoaspar 99.3 8.7E-12 1.9E-16 94.5 10.0 98 5-117 70-169 (209)
120 PF00891 Methyltransf_2: O-met 99.3 1.2E-11 2.6E-16 97.5 11.0 99 7-119 100-201 (241)
121 KOG1975 mRNA cap methyltransfe 99.3 4E-12 8.7E-17 101.0 8.1 105 10-117 120-237 (389)
122 PRK04457 spermidine synthase; 99.3 1.1E-11 2.4E-16 98.7 10.3 109 8-120 67-180 (262)
123 PRK10901 16S rRNA methyltransf 99.3 2.5E-11 5.4E-16 103.2 13.0 114 6-119 243-374 (427)
124 PRK14903 16S rRNA methyltransf 99.3 1.9E-11 4.2E-16 103.8 12.1 113 7-119 237-368 (431)
125 COG2242 CobL Precorrin-6B meth 99.3 2.5E-11 5.4E-16 90.2 10.7 100 7-119 34-137 (187)
126 TIGR00446 nop2p NOL1/NOP2/sun 99.3 2.6E-11 5.6E-16 96.9 11.5 112 7-119 71-201 (264)
127 PRK11783 rlmL 23S rRNA m(2)G24 99.3 6.6E-11 1.4E-15 106.3 14.6 112 8-119 539-658 (702)
128 TIGR00417 speE spermidine synt 99.3 1.6E-11 3.5E-16 98.3 9.5 104 8-116 73-185 (270)
129 PRK14904 16S rRNA methyltransf 99.3 2.4E-11 5.1E-16 103.9 11.1 112 7-120 250-380 (445)
130 COG2890 HemK Methylase of poly 99.3 3.1E-11 6.7E-16 97.0 10.9 116 10-128 113-250 (280)
131 PF01135 PCMT: Protein-L-isoas 99.3 7.3E-12 1.6E-16 96.3 6.5 98 6-117 71-172 (209)
132 PRK14901 16S rRNA methyltransf 99.3 3.8E-11 8.3E-16 102.3 11.2 113 7-119 252-386 (434)
133 TIGR00563 rsmB ribosomal RNA s 99.3 5.1E-11 1.1E-15 101.3 11.0 112 7-119 238-370 (426)
134 PRK15128 23S rRNA m(5)C1962 me 99.3 4.6E-11 1E-15 100.3 10.4 110 8-119 221-341 (396)
135 PF05219 DREV: DREV methyltran 99.2 4.4E-11 9.4E-16 93.2 9.2 95 6-116 93-187 (265)
136 PRK14902 16S rRNA methyltransf 99.2 8.8E-11 1.9E-15 100.5 12.0 111 8-119 251-381 (444)
137 COG4976 Predicted methyltransf 99.2 1.6E-12 3.5E-17 98.7 1.2 99 8-117 126-225 (287)
138 PLN02366 spermidine synthase 99.2 8.2E-11 1.8E-15 95.5 11.1 106 7-115 91-204 (308)
139 PLN02781 Probable caffeoyl-CoA 99.2 8.6E-11 1.9E-15 92.2 10.6 101 6-116 67-177 (234)
140 PRK01581 speE spermidine synth 99.2 1.1E-10 2.3E-15 95.9 10.9 108 7-117 150-268 (374)
141 PRK03612 spermidine synthase; 99.2 5.7E-11 1.2E-15 103.3 8.8 109 7-117 297-415 (521)
142 KOG2940 Predicted methyltransf 99.2 2.4E-11 5.3E-16 92.4 5.1 103 9-119 74-176 (325)
143 PF05891 Methyltransf_PK: AdoM 99.2 1.3E-10 2.9E-15 88.4 9.0 106 6-117 54-161 (218)
144 PRK10909 rsmD 16S rRNA m(2)G96 99.2 2.2E-10 4.7E-15 87.5 10.2 102 8-117 54-159 (199)
145 KOG1499 Protein arginine N-met 99.2 7.3E-11 1.6E-15 95.2 7.8 101 8-114 61-164 (346)
146 PF01739 CheR: CheR methyltran 99.2 1.3E-10 2.8E-15 88.4 8.7 105 7-117 31-175 (196)
147 PF02390 Methyltransf_4: Putat 99.2 1E-10 2.3E-15 89.1 8.2 111 10-120 20-136 (195)
148 COG2519 GCD14 tRNA(1-methylade 99.2 2.2E-10 4.8E-15 88.8 10.0 99 6-118 93-196 (256)
149 KOG3045 Predicted RNA methylas 99.2 1.9E-10 4E-15 89.1 9.0 88 7-120 180-267 (325)
150 PLN02672 methionine S-methyltr 99.2 3E-10 6.5E-15 104.6 11.6 109 9-119 120-279 (1082)
151 KOG2899 Predicted methyltransf 99.2 3.1E-10 6.7E-15 87.1 9.7 104 6-115 57-207 (288)
152 PRK10611 chemotaxis methyltran 99.2 2.2E-10 4.7E-15 92.0 9.3 104 7-116 115-261 (287)
153 COG2263 Predicted RNA methylas 99.1 2.8E-10 6E-15 84.5 7.8 72 10-85 48-120 (198)
154 PF10294 Methyltransf_16: Puta 99.1 4.9E-10 1.1E-14 83.9 8.9 105 6-118 44-157 (173)
155 PRK13168 rumA 23S rRNA m(5)U19 99.1 8.1E-10 1.8E-14 94.5 10.7 99 7-117 297-400 (443)
156 COG4122 Predicted O-methyltran 99.1 4.9E-10 1.1E-14 86.1 7.6 103 5-117 57-166 (219)
157 PRK14896 ksgA 16S ribosomal RN 99.1 8.2E-10 1.8E-14 88.0 9.2 74 7-84 29-102 (258)
158 COG0220 Predicted S-adenosylme 99.1 7.9E-10 1.7E-14 85.8 8.2 112 9-120 50-167 (227)
159 PRK03522 rumB 23S rRNA methylu 99.1 1E-09 2.2E-14 89.9 9.3 74 8-82 174-249 (315)
160 PLN02476 O-methyltransferase 99.0 9.5E-10 2.1E-14 87.7 8.2 101 6-116 117-227 (278)
161 KOG3191 Predicted N6-DNA-methy 99.0 9.8E-09 2.1E-13 75.6 12.4 118 9-128 45-181 (209)
162 TIGR00755 ksgA dimethyladenosi 99.0 4.4E-09 9.5E-14 83.6 11.2 75 6-84 28-105 (253)
163 PRK00274 ksgA 16S ribosomal RN 99.0 1.4E-09 2.9E-14 87.3 8.3 75 7-84 42-116 (272)
164 PF01596 Methyltransf_3: O-met 99.0 1.7E-09 3.7E-14 82.9 8.0 101 7-117 45-155 (205)
165 PF06080 DUF938: Protein of un 99.0 3.3E-09 7.2E-14 80.4 9.2 102 10-116 28-140 (204)
166 COG1352 CheR Methylase of chem 99.0 6.2E-09 1.3E-13 82.7 10.2 105 7-117 96-241 (268)
167 KOG2904 Predicted methyltransf 99.0 1E-08 2.2E-13 80.3 11.0 110 9-118 150-286 (328)
168 PLN02823 spermine synthase 99.0 7E-09 1.5E-13 85.2 10.8 108 8-116 104-219 (336)
169 TIGR02085 meth_trns_rumB 23S r 98.9 5.9E-09 1.3E-13 87.3 9.6 98 9-117 235-334 (374)
170 TIGR00095 RNA methyltransferas 98.9 9.2E-09 2E-13 78.1 9.7 103 8-116 50-158 (189)
171 TIGR00478 tly hemolysin TlyA f 98.9 8.2E-09 1.8E-13 80.3 9.5 91 7-116 75-170 (228)
172 PF05185 PRMT5: PRMT5 arginine 98.9 3.2E-09 7E-14 90.4 7.7 100 8-114 187-294 (448)
173 TIGR00479 rumA 23S rRNA (uraci 98.9 5.5E-09 1.2E-13 89.2 9.1 99 7-116 292-395 (431)
174 PF08704 GCD14: tRNA methyltra 98.9 4.1E-09 8.9E-14 82.8 7.4 98 7-117 40-146 (247)
175 PRK11727 23S rRNA mA1618 methy 98.9 1.4E-08 3E-13 82.8 10.0 80 6-85 113-201 (321)
176 PTZ00338 dimethyladenosine tra 98.9 8.2E-09 1.8E-13 83.5 8.2 74 7-84 36-112 (294)
177 COG1041 Predicted DNA modifica 98.9 1.8E-08 4E-13 81.8 10.1 108 9-118 199-311 (347)
178 PLN02589 caffeoyl-CoA O-methyl 98.9 4.7E-09 1E-13 82.6 6.3 100 6-115 78-188 (247)
179 COG1092 Predicted SAM-dependen 98.9 1.6E-08 3.5E-13 84.3 9.7 110 8-121 218-340 (393)
180 KOG3420 Predicted RNA methylas 98.9 3.8E-09 8.3E-14 75.0 4.9 75 8-83 49-124 (185)
181 PRK00050 16S rRNA m(4)C1402 me 98.8 4.5E-08 9.8E-13 78.9 10.7 75 8-82 20-99 (296)
182 PF01170 UPF0020: Putative RNA 98.8 3.7E-08 8E-13 74.2 9.5 102 7-109 28-143 (179)
183 KOG1500 Protein arginine N-met 98.8 3E-08 6.5E-13 79.7 9.3 98 9-114 179-279 (517)
184 PRK04148 hypothetical protein; 98.8 8.9E-08 1.9E-12 68.0 10.6 95 7-120 16-112 (134)
185 PRK00536 speE spermidine synth 98.8 5.5E-08 1.2E-12 77.1 10.3 97 2-116 68-170 (262)
186 COG0421 SpeE Spermidine syntha 98.8 5.2E-08 1.1E-12 78.1 9.8 105 9-116 78-189 (282)
187 PF03602 Cons_hypoth95: Conser 98.8 1.1E-08 2.3E-13 77.3 5.5 104 7-117 42-153 (183)
188 PF07942 N2227: N2227-like pro 98.8 5E-08 1.1E-12 77.4 9.6 101 6-115 55-200 (270)
189 PF10672 Methyltrans_SAM: S-ad 98.8 4.2E-08 9E-13 78.7 8.7 111 8-119 124-240 (286)
190 KOG1331 Predicted methyltransf 98.8 8.2E-09 1.8E-13 81.2 4.4 99 9-119 47-145 (293)
191 PRK01544 bifunctional N5-gluta 98.8 4.9E-08 1.1E-12 84.7 9.5 113 8-120 348-465 (506)
192 COG2521 Predicted archaeal met 98.7 2.1E-08 4.6E-13 76.7 6.0 111 7-122 134-249 (287)
193 KOG1269 SAM-dependent methyltr 98.7 1.5E-08 3.3E-13 83.8 5.6 101 10-118 113-216 (364)
194 PRK04338 N(2),N(2)-dimethylgua 98.7 7.3E-08 1.6E-12 80.7 9.0 96 9-116 59-157 (382)
195 COG0030 KsgA Dimethyladenosine 98.7 8.8E-08 1.9E-12 75.5 8.8 75 8-84 31-106 (259)
196 KOG3178 Hydroxyindole-O-methyl 98.7 1.4E-07 3.1E-12 76.5 10.1 103 8-122 178-280 (342)
197 PF03141 Methyltransf_29: Puta 98.7 1.1E-08 2.3E-13 86.5 3.0 98 10-117 120-219 (506)
198 KOG1661 Protein-L-isoaspartate 98.7 1.8E-07 3.8E-12 70.7 8.8 97 7-117 82-193 (237)
199 COG0500 SmtA SAM-dependent met 98.7 5.5E-07 1.2E-11 64.8 11.4 100 11-120 52-158 (257)
200 PF12147 Methyltransf_20: Puta 98.7 4.7E-07 1E-11 71.9 11.3 107 6-117 134-249 (311)
201 PRK11933 yebU rRNA (cytosine-C 98.7 4.2E-07 9.1E-12 77.9 11.9 114 6-119 112-244 (470)
202 PF02527 GidB: rRNA small subu 98.6 9.1E-08 2E-12 72.1 7.0 95 10-117 51-148 (184)
203 KOG0820 Ribosomal RNA adenine 98.6 6.2E-07 1.3E-11 70.3 11.0 76 4-83 55-133 (315)
204 KOG1709 Guanidinoacetate methy 98.6 5.9E-07 1.3E-11 68.1 10.3 105 6-117 100-206 (271)
205 PF01564 Spermine_synth: Sperm 98.6 6E-08 1.3E-12 76.6 4.9 108 7-117 76-191 (246)
206 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 3E-07 6.6E-12 72.6 8.7 108 9-119 58-201 (256)
207 COG0742 N6-adenine-specific me 98.6 5.4E-07 1.2E-11 67.5 9.5 110 2-117 37-154 (187)
208 TIGR03439 methyl_EasF probable 98.6 7.5E-07 1.6E-11 72.7 11.1 103 9-115 78-195 (319)
209 PF01728 FtsJ: FtsJ-like methy 98.6 1E-07 2.2E-12 71.9 5.0 107 7-122 23-144 (181)
210 PRK05031 tRNA (uracil-5-)-meth 98.5 4.4E-07 9.5E-12 75.7 9.0 56 9-65 208-265 (362)
211 TIGR00308 TRM1 tRNA(guanine-26 98.5 2E-07 4.2E-12 77.8 6.8 98 9-117 46-147 (374)
212 TIGR02143 trmA_only tRNA (urac 98.5 5.1E-07 1.1E-11 75.1 8.8 57 9-66 199-257 (353)
213 PF09243 Rsm22: Mitochondrial 98.5 1E-06 2.2E-11 70.8 10.1 112 4-124 30-146 (274)
214 PF02475 Met_10: Met-10+ like- 98.5 3.2E-07 7E-12 70.0 6.3 93 8-113 102-198 (200)
215 COG0357 GidB Predicted S-adeno 98.4 1.2E-06 2.6E-11 67.4 6.8 97 8-117 68-168 (215)
216 PRK11783 rlmL 23S rRNA m(2)G24 98.4 5.2E-06 1.1E-10 75.0 11.9 108 7-118 190-348 (702)
217 KOG1663 O-methyltransferase [S 98.4 4.8E-06 1E-10 63.9 9.8 101 7-117 73-183 (237)
218 COG0293 FtsJ 23S rRNA methylas 98.3 5.2E-06 1.1E-10 63.2 9.1 101 7-120 45-162 (205)
219 PF04672 Methyltransf_19: S-ad 98.3 4.1E-06 8.9E-11 66.2 7.9 110 7-120 68-193 (267)
220 PF00398 RrnaAD: Ribosomal RNA 98.3 5.5E-06 1.2E-10 66.2 8.8 75 7-83 30-107 (262)
221 COG0116 Predicted N6-adenine-s 98.3 1.5E-05 3.2E-10 66.0 11.3 109 9-118 193-345 (381)
222 COG2520 Predicted methyltransf 98.3 5.5E-06 1.2E-10 67.9 8.5 101 8-120 189-292 (341)
223 TIGR02987 met_A_Alw26 type II 98.2 6.9E-06 1.5E-10 72.0 9.4 78 7-84 31-123 (524)
224 COG3897 Predicted methyltransf 98.2 6.6E-06 1.4E-10 61.6 7.8 105 7-122 79-184 (218)
225 PF11968 DUF3321: Putative met 98.2 4E-06 8.7E-11 64.0 6.8 90 8-117 52-149 (219)
226 COG2265 TrmA SAM-dependent met 98.2 4.4E-06 9.6E-11 71.0 7.6 100 6-117 292-396 (432)
227 PF09445 Methyltransf_15: RNA 98.2 1.5E-06 3.3E-11 63.9 4.2 97 10-107 2-112 (163)
228 PF02384 N6_Mtase: N-6 DNA Met 98.2 4E-06 8.7E-11 68.6 6.7 111 7-117 46-183 (311)
229 KOG3987 Uncharacterized conser 98.2 2.4E-07 5.1E-12 69.9 -0.6 92 8-115 113-205 (288)
230 TIGR00006 S-adenosyl-methyltra 98.1 4.3E-05 9.3E-10 61.9 11.5 76 8-83 21-102 (305)
231 COG4076 Predicted RNA methylas 98.1 6.9E-06 1.5E-10 61.2 5.8 97 9-114 34-132 (252)
232 PF08123 DOT1: Histone methyla 98.1 1.2E-05 2.6E-10 61.7 7.0 100 7-115 42-156 (205)
233 COG0144 Sun tRNA and rRNA cyto 98.1 8.1E-05 1.7E-09 62.0 12.3 114 6-119 155-290 (355)
234 PF04816 DUF633: Family of unk 98.1 8.5E-05 1.8E-09 57.1 11.2 115 11-138 1-120 (205)
235 PF01269 Fibrillarin: Fibrilla 98.1 6.2E-05 1.3E-09 57.9 10.0 105 4-117 70-178 (229)
236 PRK11760 putative 23S rRNA C24 98.0 3.3E-05 7.1E-10 63.2 8.9 87 6-110 210-296 (357)
237 PF13679 Methyltransf_32: Meth 98.0 5E-05 1.1E-09 54.9 8.8 73 6-80 24-106 (141)
238 PF05958 tRNA_U5-meth_tr: tRNA 98.0 1.6E-05 3.4E-10 66.3 6.5 56 10-66 199-256 (352)
239 PF03059 NAS: Nicotianamine sy 98.0 9.1E-05 2E-09 59.2 9.9 102 9-117 122-230 (276)
240 COG4262 Predicted spermidine s 97.9 0.00014 3E-09 59.7 10.4 113 7-122 289-411 (508)
241 PF13578 Methyltransf_24: Meth 97.9 4.7E-06 1E-10 57.1 1.7 97 12-117 1-105 (106)
242 KOG2915 tRNA(1-methyladenosine 97.8 0.00017 3.8E-09 56.8 9.2 93 8-113 106-205 (314)
243 TIGR01444 fkbM_fam methyltrans 97.8 6.5E-05 1.4E-09 54.1 6.4 57 10-66 1-60 (143)
244 KOG3201 Uncharacterized conser 97.8 3.3E-05 7.1E-10 56.2 4.6 108 9-123 31-146 (201)
245 COG1889 NOP1 Fibrillarin-like 97.8 0.00039 8.4E-09 52.6 10.4 105 3-116 72-179 (231)
246 KOG2798 Putative trehalase [Ca 97.8 8.2E-05 1.8E-09 59.7 6.9 101 7-115 150-294 (369)
247 COG1189 Predicted rRNA methyla 97.7 0.0002 4.2E-09 55.6 8.1 96 7-116 79-177 (245)
248 COG0275 Predicted S-adenosylme 97.7 0.00097 2.1E-08 53.5 11.6 72 8-79 24-102 (314)
249 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 0.00014 3.1E-09 58.7 7.0 114 6-119 84-221 (283)
250 KOG2730 Methylase [General fun 97.6 5.7E-05 1.2E-09 57.7 3.7 75 8-83 95-175 (263)
251 PF06962 rRNA_methylase: Putat 97.6 0.00029 6.4E-09 50.5 7.2 86 32-119 1-94 (140)
252 PF01795 Methyltransf_5: MraW 97.6 0.00035 7.7E-09 56.7 7.8 74 7-80 20-100 (310)
253 PF03141 Methyltransf_29: Puta 97.5 0.00052 1.1E-08 58.6 8.0 119 9-139 367-488 (506)
254 COG4627 Uncharacterized protei 97.4 3.7E-05 8.1E-10 55.5 0.5 46 66-117 41-86 (185)
255 COG4798 Predicted methyltransf 97.4 0.00096 2.1E-08 50.2 7.7 108 8-119 49-168 (238)
256 COG5459 Predicted rRNA methyla 97.4 0.00047 1E-08 56.4 6.4 119 3-127 109-235 (484)
257 KOG1122 tRNA and rRNA cytosine 97.4 0.002 4.4E-08 53.9 10.1 117 2-119 236-373 (460)
258 KOG4589 Cell division protein 97.4 0.0018 3.8E-08 48.5 8.5 102 8-120 70-187 (232)
259 PF05971 Methyltransf_10: Prot 97.3 0.00073 1.6E-08 54.6 6.9 79 8-86 103-190 (299)
260 KOG3115 Methyltransferase-like 97.3 0.00061 1.3E-08 51.6 5.7 113 5-117 58-183 (249)
261 PRK10742 putative methyltransf 97.3 0.00096 2.1E-08 52.4 6.7 75 10-85 91-176 (250)
262 COG1565 Uncharacterized conser 97.3 0.0024 5.1E-08 52.7 9.0 46 8-53 78-132 (370)
263 COG2384 Predicted SAM-dependen 97.3 0.007 1.5E-07 46.5 11.0 117 10-138 19-139 (226)
264 PLN02668 indole-3-acetate carb 97.2 0.0026 5.6E-08 53.4 8.7 53 69-121 158-241 (386)
265 PF03492 Methyltransf_7: SAM d 97.2 0.0017 3.6E-08 53.7 7.3 118 4-122 13-188 (334)
266 KOG2793 Putative N2,N2-dimethy 97.1 0.0039 8.4E-08 49.1 8.5 102 9-117 88-199 (248)
267 PF07091 FmrO: Ribosomal RNA m 97.1 0.0017 3.6E-08 51.0 6.3 77 8-86 106-184 (251)
268 KOG2187 tRNA uracil-5-methyltr 97.0 0.00054 1.2E-08 58.6 3.2 56 9-65 385-442 (534)
269 cd00315 Cyt_C5_DNA_methylase C 96.9 0.013 2.8E-07 47.2 10.5 74 9-86 1-75 (275)
270 PF04989 CmcI: Cephalosporin h 96.9 0.0047 1E-07 47.2 7.1 102 8-117 33-147 (206)
271 PF02005 TRM: N2,N2-dimethylgu 96.9 0.0029 6.3E-08 53.2 6.3 100 7-117 49-154 (377)
272 KOG2920 Predicted methyltransf 96.8 0.0011 2.3E-08 52.9 2.9 102 8-116 117-233 (282)
273 KOG4058 Uncharacterized conser 96.8 0.013 2.7E-07 42.4 7.9 107 5-124 70-179 (199)
274 KOG1501 Arginine N-methyltrans 96.7 0.0025 5.5E-08 53.6 4.9 59 7-65 66-127 (636)
275 KOG1562 Spermidine synthase [A 96.5 0.0084 1.8E-07 48.1 6.0 106 9-117 123-236 (337)
276 KOG0024 Sorbitol dehydrogenase 96.5 0.044 9.6E-07 44.7 10.1 107 8-127 170-283 (354)
277 COG1064 AdhP Zn-dependent alco 96.4 0.014 3E-07 48.2 7.2 91 9-119 168-261 (339)
278 KOG1099 SAM-dependent methyltr 96.4 0.011 2.3E-07 45.8 6.1 102 7-119 41-165 (294)
279 PF03269 DUF268: Caenorhabditi 96.4 0.002 4.3E-08 47.0 1.9 103 9-117 3-111 (177)
280 KOG0822 Protein kinase inhibit 96.3 0.0059 1.3E-07 52.6 4.8 105 8-118 368-479 (649)
281 PF02636 Methyltransf_28: Puta 96.3 0.011 2.4E-07 46.9 5.9 46 7-52 18-72 (252)
282 PF01861 DUF43: Protein of unk 96.2 0.094 2E-06 41.1 10.4 103 9-119 46-150 (243)
283 KOG2198 tRNA cytosine-5-methyl 96.2 0.066 1.4E-06 44.4 9.8 114 6-119 154-298 (375)
284 PF04445 SAM_MT: Putative SAM- 96.1 0.01 2.3E-07 46.3 4.7 75 9-85 77-163 (234)
285 COG1063 Tdh Threonine dehydrog 96.1 0.11 2.3E-06 43.4 11.1 93 10-120 171-272 (350)
286 COG0286 HsdM Type I restrictio 96.0 0.075 1.6E-06 46.4 10.2 111 7-117 186-326 (489)
287 PF06859 Bin3: Bicoid-interact 96.0 0.0068 1.5E-07 41.4 2.9 41 73-116 1-43 (110)
288 PF11899 DUF3419: Protein of u 95.9 0.017 3.8E-07 48.5 5.7 64 54-122 275-339 (380)
289 cd08283 FDH_like_1 Glutathione 95.9 0.047 1E-06 46.0 8.1 108 9-117 186-306 (386)
290 PRK09880 L-idonate 5-dehydroge 95.8 0.049 1.1E-06 45.0 7.9 95 9-118 171-267 (343)
291 KOG1596 Fibrillarin and relate 95.8 0.059 1.3E-06 42.2 7.5 101 8-117 157-261 (317)
292 PRK09424 pntA NAD(P) transhydr 95.8 0.15 3.3E-06 44.6 10.8 99 7-118 164-286 (509)
293 PHA01634 hypothetical protein 95.6 0.03 6.5E-07 39.4 4.9 45 7-51 28-72 (156)
294 PRK11524 putative methyltransf 95.6 0.025 5.4E-07 45.8 5.2 63 54-116 7-79 (284)
295 PF10354 DUF2431: Domain of un 95.4 0.59 1.3E-05 34.7 11.4 106 13-120 2-128 (166)
296 PF07757 AdoMet_MTase: Predict 95.2 0.015 3.3E-07 39.5 2.3 30 8-38 59-88 (112)
297 PTZ00357 methyltransferase; Pr 95.2 0.086 1.9E-06 47.3 7.3 98 9-112 702-830 (1072)
298 COG3129 Predicted SAM-dependen 95.2 0.041 9E-07 42.8 4.8 79 7-86 78-166 (292)
299 COG1867 TRM1 N2,N2-dimethylgua 95.1 0.072 1.6E-06 44.2 6.2 98 8-116 53-153 (380)
300 PF00145 DNA_methylase: C-5 cy 94.9 0.087 1.9E-06 43.0 6.3 95 10-110 2-104 (335)
301 PF05711 TylF: Macrocin-O-meth 94.8 0.11 2.3E-06 41.2 6.4 107 7-122 74-217 (248)
302 COG0270 Dcm Site-specific DNA 94.8 0.3 6.5E-06 40.4 9.4 77 7-86 2-80 (328)
303 KOG1253 tRNA methyltransferase 94.7 0.03 6.5E-07 48.0 3.2 102 5-117 107-216 (525)
304 COG4301 Uncharacterized conser 94.7 0.57 1.2E-05 37.0 9.8 112 6-122 77-199 (321)
305 PRK13699 putative methylase; P 94.6 0.065 1.4E-06 41.9 4.8 60 57-116 3-71 (227)
306 TIGR00675 dcm DNA-methyltransf 94.2 0.4 8.6E-06 39.4 8.7 72 11-86 1-72 (315)
307 PF11599 AviRa: RRNA methyltra 94.2 0.064 1.4E-06 41.3 3.7 112 4-115 48-212 (246)
308 cd08254 hydroxyacyl_CoA_DH 6-h 94.2 0.79 1.7E-05 37.3 10.5 93 8-118 166-264 (338)
309 KOG2352 Predicted spermine/spe 94.2 0.1 2.2E-06 44.8 5.2 110 7-117 295-416 (482)
310 PF00107 ADH_zinc_N: Zinc-bind 94.0 0.25 5.5E-06 34.4 6.4 86 18-120 2-92 (130)
311 TIGR00027 mthyl_TIGR00027 meth 94.0 0.75 1.6E-05 36.7 9.6 104 7-117 81-197 (260)
312 PF11312 DUF3115: Protein of u 93.4 0.23 5E-06 40.4 5.8 109 7-118 86-243 (315)
313 PRK01747 mnmC bifunctional tRN 93.4 0.27 5.9E-06 44.6 6.9 107 6-117 56-206 (662)
314 cd08230 glucose_DH Glucose deh 93.3 0.69 1.5E-05 38.4 8.8 94 8-119 173-271 (355)
315 TIGR01202 bchC 2-desacetyl-2-h 93.3 0.66 1.4E-05 37.7 8.5 85 9-118 146-232 (308)
316 KOG2651 rRNA adenine N-6-methy 93.1 0.2 4.4E-06 41.8 5.1 44 5-48 151-194 (476)
317 KOG2539 Mitochondrial/chloropl 93.1 0.78 1.7E-05 39.4 8.6 109 9-120 202-318 (491)
318 COG3510 CmcI Cephalosporin hyd 93.1 0.48 1E-05 36.0 6.5 100 8-117 70-180 (237)
319 COG0686 Ald Alanine dehydrogen 92.9 0.37 8E-06 39.3 6.2 103 4-116 164-267 (371)
320 PRK10458 DNA cytosine methylas 92.9 2.1 4.6E-05 37.2 11.2 76 8-84 88-180 (467)
321 COG1255 Uncharacterized protei 92.9 1.2 2.6E-05 30.8 7.7 91 6-119 12-104 (129)
322 cd08232 idonate-5-DH L-idonate 92.8 0.64 1.4E-05 38.1 7.8 93 7-117 165-262 (339)
323 PRK11524 putative methyltransf 92.7 0.34 7.4E-06 39.2 5.9 43 8-51 209-251 (284)
324 KOG1227 Putative methyltransfe 92.6 0.075 1.6E-06 42.9 1.9 69 9-79 196-268 (351)
325 cd08237 ribitol-5-phosphate_DH 92.5 0.98 2.1E-05 37.3 8.6 91 9-119 165-258 (341)
326 TIGR02822 adh_fam_2 zinc-bindi 92.4 2.5 5.3E-05 34.8 10.7 89 8-118 166-255 (329)
327 TIGR00561 pntA NAD(P) transhyd 92.2 0.98 2.1E-05 39.6 8.4 98 7-117 163-284 (511)
328 TIGR03366 HpnZ_proposed putati 92.0 0.8 1.7E-05 36.7 7.3 93 9-118 122-219 (280)
329 PRK13699 putative methylase; P 92.0 0.52 1.1E-05 36.8 5.9 43 9-52 165-207 (227)
330 PF02254 TrkA_N: TrkA-N domain 91.9 2.3 4.9E-05 29.0 8.5 88 16-118 4-97 (116)
331 TIGR03451 mycoS_dep_FDH mycoth 91.2 2.9 6.2E-05 34.7 10.0 94 8-118 177-277 (358)
332 PRK05872 short chain dehydroge 91.0 6 0.00013 31.9 11.5 75 8-83 9-95 (296)
333 cd08281 liver_ADH_like1 Zinc-d 91.0 2.5 5.4E-05 35.3 9.5 93 9-118 193-291 (371)
334 cd05188 MDR Medium chain reduc 90.8 1.7 3.8E-05 33.8 8.0 93 7-118 134-233 (271)
335 PF02737 3HCDH_N: 3-hydroxyacy 90.7 5.7 0.00012 29.7 10.7 97 11-122 2-119 (180)
336 PRK05786 fabG 3-ketoacyl-(acyl 90.6 5.3 0.00012 30.7 10.5 107 9-118 6-136 (238)
337 PRK07819 3-hydroxybutyryl-CoA 90.5 2.9 6.3E-05 33.8 9.1 101 10-125 7-129 (286)
338 PRK07533 enoyl-(acyl carrier p 90.0 7.6 0.00016 30.5 11.0 108 9-117 11-148 (258)
339 COG1179 Dinucleotide-utilizing 89.6 2.5 5.4E-05 33.4 7.5 89 8-105 30-144 (263)
340 PF10237 N6-adenineMlase: Prob 89.1 5.7 0.00012 29.3 8.9 93 8-117 26-123 (162)
341 COG3315 O-Methyltransferase in 89.1 3.1 6.7E-05 34.0 8.2 105 7-117 92-209 (297)
342 PRK07417 arogenate dehydrogena 89.0 3.3 7.1E-05 33.3 8.3 84 10-113 2-87 (279)
343 cd08234 threonine_DH_like L-th 88.9 7.4 0.00016 31.6 10.5 94 8-118 160-258 (334)
344 PRK07066 3-hydroxybutyryl-CoA 88.6 11 0.00023 31.2 11.1 100 1-115 1-117 (321)
345 PRK05708 2-dehydropantoate 2-r 88.5 8.4 0.00018 31.4 10.5 98 9-119 3-106 (305)
346 PRK07109 short chain dehydroge 88.5 6.5 0.00014 32.5 10.0 79 4-83 4-95 (334)
347 PRK08267 short chain dehydroge 88.4 9.2 0.0002 29.9 10.5 72 10-83 3-87 (260)
348 cd08239 THR_DH_like L-threonin 88.4 3.1 6.7E-05 34.1 8.0 94 8-118 164-263 (339)
349 COG1748 LYS9 Saccharopine dehy 88.3 3.9 8.4E-05 34.7 8.5 73 9-83 2-78 (389)
350 PLN02740 Alcohol dehydrogenase 88.2 6.4 0.00014 33.0 9.9 94 8-118 199-301 (381)
351 cd08255 2-desacetyl-2-hydroxye 88.0 6.5 0.00014 31.0 9.4 92 8-118 98-191 (277)
352 PRK09072 short chain dehydroge 87.8 8.3 0.00018 30.2 9.9 74 9-83 6-90 (263)
353 COG0569 TrkA K+ transport syst 87.7 2.9 6.4E-05 32.6 7.0 67 9-79 1-72 (225)
354 KOG2671 Putative RNA methylase 87.7 0.28 6.1E-06 40.5 1.3 106 10-116 211-353 (421)
355 cd05278 FDH_like Formaldehyde 87.6 7.9 0.00017 31.6 10.0 93 8-117 168-267 (347)
356 PF03721 UDPG_MGDP_dh_N: UDP-g 87.6 2.6 5.5E-05 31.8 6.4 111 9-125 1-128 (185)
357 PRK10309 galactitol-1-phosphat 87.5 7 0.00015 32.1 9.7 94 8-118 161-261 (347)
358 PRK03659 glutathione-regulated 87.3 6.8 0.00015 35.3 10.0 93 9-119 401-500 (601)
359 PRK11064 wecC UDP-N-acetyl-D-m 87.2 9 0.00019 32.8 10.3 112 9-123 4-125 (415)
360 cd08245 CAD Cinnamyl alcohol d 87.1 8.5 0.00018 31.2 9.8 93 8-117 163-256 (330)
361 PRK12939 short chain dehydroge 87.0 8.9 0.00019 29.6 9.6 73 8-82 7-93 (250)
362 PRK06035 3-hydroxyacyl-CoA deh 86.5 15 0.00034 29.5 11.2 90 10-114 5-118 (291)
363 PRK08265 short chain dehydroge 86.4 14 0.00031 29.0 11.1 106 9-117 7-136 (261)
364 PRK06522 2-dehydropantoate 2-r 86.3 11 0.00024 30.3 10.0 96 10-118 2-101 (304)
365 PRK07502 cyclohexadienyl dehyd 86.2 7.3 0.00016 31.7 8.9 89 9-115 7-98 (307)
366 cd08285 NADP_ADH NADP(H)-depen 86.2 11 0.00025 30.9 10.2 93 9-118 168-267 (351)
367 PF04072 LCM: Leucine carboxyl 86.2 5.3 0.00012 29.9 7.5 88 10-103 81-182 (183)
368 PRK08324 short chain dehydroge 86.1 8.6 0.00019 35.2 10.1 107 9-117 423-557 (681)
369 cd05285 sorbitol_DH Sorbitol d 85.7 14 0.00031 30.2 10.5 94 8-118 163-266 (343)
370 KOG0821 Predicted ribosomal RN 85.6 1.3 2.7E-05 34.6 3.8 57 9-65 52-109 (326)
371 PRK03562 glutathione-regulated 85.6 15 0.00032 33.3 11.2 66 8-79 400-470 (621)
372 cd00401 AdoHcyase S-adenosyl-L 85.4 6.4 0.00014 33.7 8.4 87 8-119 202-291 (413)
373 PRK05808 3-hydroxybutyryl-CoA 84.7 19 0.00041 28.9 11.1 93 10-117 5-118 (282)
374 PF02719 Polysacc_synt_2: Poly 84.6 1.5 3.3E-05 35.6 4.1 75 16-90 5-94 (293)
375 PF02153 PDH: Prephenate dehyd 84.6 5.2 0.00011 31.8 7.1 75 22-115 2-77 (258)
376 PRK06701 short chain dehydroge 84.5 12 0.00027 30.0 9.5 108 9-117 47-181 (290)
377 TIGR00518 alaDH alanine dehydr 84.5 3.3 7.1E-05 34.9 6.2 102 7-119 166-269 (370)
378 PLN02827 Alcohol dehydrogenase 84.3 12 0.00026 31.5 9.5 94 8-118 194-296 (378)
379 PRK07806 short chain dehydroge 84.2 17 0.00037 28.0 10.1 108 8-117 6-134 (248)
380 KOG1201 Hydroxysteroid 17-beta 84.1 5.7 0.00012 32.3 7.0 76 7-83 37-124 (300)
381 PF05430 Methyltransf_30: S-ad 84.0 0.71 1.5E-05 32.5 1.7 74 55-137 32-106 (124)
382 PF05206 TRM13: Methyltransfer 83.9 2.1 4.5E-05 34.2 4.5 58 9-67 20-86 (259)
383 PRK09260 3-hydroxybutyryl-CoA 83.8 16 0.00034 29.5 9.7 94 10-117 3-117 (288)
384 PLN03154 putative allyl alcoho 83.7 5.2 0.00011 33.2 7.1 92 9-117 160-258 (348)
385 COG2933 Predicted SAM-dependen 83.5 5.1 0.00011 32.2 6.4 67 7-80 211-277 (358)
386 PRK07530 3-hydroxybutyryl-CoA 83.2 18 0.00039 29.2 9.9 92 9-115 5-117 (292)
387 TIGR02825 B4_12hDH leukotriene 83.2 12 0.00026 30.4 9.0 92 8-117 139-237 (325)
388 cd08261 Zn_ADH7 Alcohol dehydr 83.2 16 0.00035 29.8 9.8 93 8-117 160-258 (337)
389 cd08238 sorbose_phosphate_red 83.2 27 0.00059 29.6 11.4 95 9-116 177-287 (410)
390 PLN02586 probable cinnamyl alc 83.1 7.4 0.00016 32.4 7.8 93 9-118 185-279 (360)
391 TIGR02437 FadB fatty oxidation 82.9 16 0.00034 33.8 10.3 99 9-122 314-433 (714)
392 PRK07576 short chain dehydroge 82.6 21 0.00046 28.0 9.9 71 9-81 10-94 (264)
393 cd08293 PTGR2 Prostaglandin re 82.2 3.7 8.1E-05 33.6 5.6 92 9-117 156-254 (345)
394 cd08278 benzyl_alcohol_DH Benz 82.0 17 0.00038 30.2 9.6 92 9-117 188-285 (365)
395 PRK08293 3-hydroxybutyryl-CoA 81.9 7.2 0.00016 31.4 7.1 92 10-115 5-118 (287)
396 PRK09496 trkA potassium transp 81.9 5 0.00011 34.5 6.5 65 9-79 232-303 (453)
397 PRK05650 short chain dehydroge 81.8 20 0.00044 28.2 9.6 72 10-83 2-87 (270)
398 PRK06181 short chain dehydroge 81.3 15 0.00031 28.8 8.6 72 10-83 3-88 (263)
399 PRK07523 gluconate 5-dehydroge 81.3 23 0.0005 27.5 10.3 74 8-83 10-97 (255)
400 PF03514 GRAS: GRAS domain fam 81.2 7.8 0.00017 32.7 7.2 112 4-115 107-242 (374)
401 PRK10669 putative cation:proto 81.1 28 0.00062 31.0 11.1 63 9-79 418-487 (558)
402 TIGR03201 dearomat_had 6-hydro 81.0 21 0.00046 29.4 9.8 41 8-49 167-209 (349)
403 PRK08177 short chain dehydroge 81.0 19 0.00041 27.5 8.9 68 10-82 3-80 (225)
404 PLN02514 cinnamyl-alcohol dehy 80.8 15 0.00032 30.5 8.8 93 9-118 182-276 (357)
405 PRK11730 fadB multifunctional 80.6 35 0.00076 31.6 11.7 98 9-121 314-432 (715)
406 PRK12921 2-dehydropantoate 2-r 80.6 28 0.00061 28.0 10.2 96 9-117 1-102 (305)
407 TIGR02441 fa_ox_alpha_mit fatt 80.4 16 0.00035 33.8 9.5 99 9-122 336-455 (737)
408 PRK06249 2-dehydropantoate 2-r 80.4 14 0.00031 30.2 8.4 98 7-118 4-107 (313)
409 TIGR00497 hsdM type I restrict 80.4 25 0.00054 30.9 10.3 108 9-116 219-354 (501)
410 TIGR02819 fdhA_non_GSH formald 80.3 21 0.00046 30.2 9.7 107 9-119 187-301 (393)
411 COG1568 Predicted methyltransf 80.2 12 0.00026 30.3 7.4 110 10-128 155-271 (354)
412 cd01487 E1_ThiF_like E1_ThiF_l 80.1 12 0.00027 27.8 7.3 31 10-40 1-33 (174)
413 cd08236 sugar_DH NAD(P)-depend 80.1 13 0.00029 30.3 8.2 93 8-117 160-258 (343)
414 TIGR02818 adh_III_F_hyde S-(hy 79.9 9.1 0.0002 31.9 7.3 97 8-118 186-288 (368)
415 PRK06603 enoyl-(acyl carrier p 79.8 28 0.0006 27.4 11.9 108 9-117 9-146 (260)
416 PRK08340 glucose-1-dehydrogena 79.6 9.9 0.00022 29.7 7.1 73 10-83 2-86 (259)
417 COG0287 TyrA Prephenate dehydr 79.6 14 0.00031 29.8 7.9 88 9-113 4-94 (279)
418 PRK11154 fadJ multifunctional 79.4 29 0.00063 32.0 10.8 99 9-122 310-430 (708)
419 PRK06130 3-hydroxybutyryl-CoA 79.2 31 0.00067 28.0 10.0 92 9-114 5-112 (311)
420 PF01555 N6_N4_Mtase: DNA meth 79.0 7.6 0.00017 29.5 6.2 24 94-117 33-56 (231)
421 cd08300 alcohol_DH_class_III c 79.0 21 0.00046 29.7 9.2 94 8-118 187-289 (368)
422 PF03446 NAD_binding_2: NAD bi 78.7 10 0.00022 27.7 6.4 98 10-127 3-104 (163)
423 PRK15057 UDP-glucose 6-dehydro 78.7 40 0.00087 28.6 11.3 109 10-124 2-124 (388)
424 PRK06505 enoyl-(acyl carrier p 78.7 31 0.00067 27.3 10.2 108 9-117 8-145 (271)
425 PLN02545 3-hydroxybutyryl-CoA 78.6 27 0.00059 28.1 9.5 90 10-114 6-116 (295)
426 PRK06484 short chain dehydroge 78.4 42 0.00091 29.3 11.2 106 9-117 270-400 (520)
427 TIGR03026 NDP-sugDHase nucleot 77.9 37 0.00079 29.0 10.4 107 10-122 2-125 (411)
428 TIGR02356 adenyl_thiF thiazole 77.9 24 0.00051 26.9 8.4 32 8-39 21-54 (202)
429 cd08233 butanediol_DH_like (2R 77.5 35 0.00077 28.0 10.1 93 9-118 174-273 (351)
430 cd08231 MDR_TM0436_like Hypoth 77.5 39 0.00084 27.9 10.6 92 9-117 179-280 (361)
431 cd08294 leukotriene_B4_DH_like 77.2 9.4 0.0002 30.9 6.5 91 9-117 145-241 (329)
432 KOG0023 Alcohol dehydrogenase, 77.0 5.1 0.00011 33.0 4.6 88 17-120 192-282 (360)
433 PRK07774 short chain dehydroge 76.7 32 0.0007 26.5 9.5 73 9-83 7-93 (250)
434 cd08242 MDR_like Medium chain 76.5 31 0.00066 27.8 9.3 87 8-116 156-244 (319)
435 PRK00094 gpsA NAD(P)H-dependen 76.5 27 0.00059 28.4 9.0 93 9-117 2-105 (325)
436 PLN02657 3,8-divinyl protochlo 76.5 25 0.00054 29.8 8.9 72 7-80 59-143 (390)
437 cd08295 double_bond_reductase_ 76.1 14 0.00031 30.2 7.3 92 9-117 153-251 (338)
438 PRK06196 oxidoreductase; Provi 76.1 40 0.00087 27.3 10.9 70 9-83 27-109 (315)
439 cd08277 liver_alcohol_DH_like 75.9 16 0.00034 30.4 7.6 93 9-118 186-287 (365)
440 PRK05854 short chain dehydroge 75.7 24 0.00051 28.7 8.4 75 8-83 14-103 (313)
441 PRK07680 late competence prote 75.2 31 0.00067 27.5 8.8 89 10-116 2-95 (273)
442 COG1086 Predicted nucleoside-d 75.1 14 0.0003 33.0 7.0 80 10-90 252-342 (588)
443 PF05050 Methyltransf_21: Meth 75.0 6.7 0.00015 28.2 4.6 37 13-49 1-42 (167)
444 PF02558 ApbA: Ketopantoate re 74.9 17 0.00037 25.8 6.7 96 11-119 1-103 (151)
445 cd00755 YgdL_like Family of ac 74.6 24 0.00052 27.7 7.8 33 8-40 11-45 (231)
446 PRK08339 short chain dehydroge 74.4 23 0.00049 27.9 7.8 74 9-83 9-95 (263)
447 PLN02178 cinnamyl-alcohol dehy 74.2 17 0.00038 30.5 7.4 91 9-118 180-274 (375)
448 COG5379 BtaA S-adenosylmethion 74.2 8.4 0.00018 31.4 5.1 77 35-119 291-368 (414)
449 COG0300 DltE Short-chain dehyd 74.1 40 0.00087 27.1 9.0 78 8-86 6-97 (265)
450 KOG1209 1-Acyl dihydroxyaceton 74.0 23 0.00049 27.8 7.1 72 7-84 6-92 (289)
451 cd08298 CAD2 Cinnamyl alcohol 73.8 46 0.00099 26.9 9.7 87 9-117 169-256 (329)
452 cd08296 CAD_like Cinnamyl alco 73.6 19 0.00041 29.4 7.4 92 8-117 164-259 (333)
453 COG1893 ApbA Ketopantoate redu 73.5 39 0.00086 27.7 9.1 100 9-122 1-106 (307)
454 PLN02819 lysine-ketoglutarate 73.5 14 0.0003 35.6 7.2 112 8-122 569-708 (1042)
455 cd08301 alcohol_DH_plants Plan 73.3 17 0.00037 30.2 7.1 95 8-119 188-291 (369)
456 PF01488 Shikimate_DH: Shikima 73.1 7.6 0.00016 27.5 4.3 74 7-84 11-86 (135)
457 PRK05855 short chain dehydroge 73.0 44 0.00096 29.4 10.1 74 8-83 315-402 (582)
458 COG0677 WecC UDP-N-acetyl-D-ma 73.0 23 0.00049 30.3 7.5 106 9-122 10-133 (436)
459 PF11899 DUF3419: Protein of u 73.0 9.7 0.00021 32.3 5.5 44 6-50 34-77 (380)
460 PRK07024 short chain dehydroge 73.0 21 0.00046 27.8 7.3 73 9-83 3-88 (257)
461 PF12692 Methyltransf_17: S-ad 72.9 6.2 0.00013 28.7 3.7 97 9-115 30-132 (160)
462 PRK05476 S-adenosyl-L-homocyst 72.8 16 0.00035 31.4 6.9 89 7-120 211-302 (425)
463 PRK06182 short chain dehydroge 72.5 45 0.00097 26.2 9.5 68 9-83 4-84 (273)
464 PRK07326 short chain dehydroge 72.4 18 0.00039 27.7 6.7 72 9-82 7-91 (237)
465 PRK06139 short chain dehydroge 72.4 29 0.00064 28.6 8.2 74 9-83 8-94 (330)
466 PRK08507 prephenate dehydrogen 72.2 33 0.00071 27.4 8.3 84 10-114 2-88 (275)
467 PRK10083 putative oxidoreducta 72.0 31 0.00068 28.0 8.3 95 9-118 162-260 (339)
468 TIGR00872 gnd_rel 6-phosphoglu 71.9 21 0.00045 29.0 7.2 88 10-115 2-91 (298)
469 TIGR02354 thiF_fam2 thiamine b 71.7 42 0.00092 25.6 9.5 32 8-39 21-54 (200)
470 cd08240 6_hydroxyhexanoate_dh_ 71.5 55 0.0012 26.8 9.8 93 8-117 176-274 (350)
471 TIGR00936 ahcY adenosylhomocys 71.4 25 0.00054 30.2 7.6 89 8-120 195-285 (406)
472 PLN00203 glutamyl-tRNA reducta 71.4 24 0.00051 31.3 7.7 106 8-126 266-376 (519)
473 cd05281 TDH Threonine dehydrog 71.3 26 0.00057 28.6 7.8 92 9-117 165-262 (341)
474 PRK08306 dipicolinate synthase 71.2 26 0.00057 28.5 7.5 90 8-119 152-243 (296)
475 TIGR02622 CDP_4_6_dhtase CDP-g 71.1 40 0.00087 27.7 8.8 72 9-82 5-84 (349)
476 PTZ00082 L-lactate dehydrogena 71.0 58 0.0013 26.9 10.1 110 8-126 6-135 (321)
477 PRK12826 3-ketoacyl-(acyl-carr 70.6 27 0.00059 26.8 7.4 75 7-83 5-93 (251)
478 cd01842 SGNH_hydrolase_like_5 70.5 15 0.00033 27.6 5.4 49 69-117 46-99 (183)
479 COG0604 Qor NADPH:quinone redu 70.5 16 0.00036 30.1 6.3 96 8-119 143-243 (326)
480 PRK06179 short chain dehydroge 70.5 49 0.0011 25.9 8.9 67 8-83 4-83 (270)
481 KOG1269 SAM-dependent methyltr 70.5 11 0.00024 31.7 5.3 104 9-119 182-315 (364)
482 cd05279 Zn_ADH1 Liver alcohol 70.3 33 0.00073 28.4 8.2 95 9-117 185-285 (365)
483 COG2910 Putative NADH-flavin r 70.2 42 0.00091 25.6 7.7 87 10-109 2-94 (211)
484 PRK07454 short chain dehydroge 70.1 30 0.00065 26.5 7.5 73 9-83 7-93 (241)
485 PLN02253 xanthoxin dehydrogena 70.0 36 0.00077 26.9 8.1 73 9-83 19-104 (280)
486 PRK06940 short chain dehydroge 69.9 52 0.0011 26.1 9.0 103 11-116 5-124 (275)
487 COG0416 PlsX Fatty acid/phosph 69.5 19 0.00041 29.8 6.2 93 9-108 140-252 (338)
488 PRK12823 benD 1,6-dihydroxycyc 69.4 33 0.00071 26.7 7.7 76 6-82 6-93 (260)
489 PRK12744 short chain dehydroge 69.4 51 0.0011 25.6 10.6 114 1-116 1-144 (257)
490 KOG2015 NEDD8-activating compl 69.2 58 0.0013 27.1 8.8 76 9-86 41-140 (422)
491 PRK15116 sulfur acceptor prote 69.1 59 0.0013 26.2 9.4 32 8-39 30-63 (268)
492 COG1062 AdhC Zn-dependent alco 68.8 69 0.0015 26.9 9.3 97 9-122 187-290 (366)
493 PRK07904 short chain dehydroge 68.7 27 0.00059 27.3 7.0 75 7-82 7-96 (253)
494 COG4017 Uncharacterized protei 68.6 12 0.00025 28.7 4.5 66 9-86 46-112 (254)
495 cd08263 Zn_ADH10 Alcohol dehyd 68.5 67 0.0014 26.6 10.4 92 9-117 189-287 (367)
496 PRK07984 enoyl-(acyl carrier p 68.4 57 0.0012 25.7 11.4 74 9-83 7-94 (262)
497 PRK08644 thiamine biosynthesis 68.4 52 0.0011 25.3 8.6 32 8-39 28-61 (212)
498 PRK07231 fabG 3-ketoacyl-(acyl 68.4 32 0.0007 26.4 7.4 74 9-83 6-91 (251)
499 PRK14620 NAD(P)H-dependent gly 68.1 54 0.0012 26.8 8.9 93 10-117 2-106 (326)
500 PF06460 NSP13: Coronavirus NS 67.8 21 0.00045 28.7 5.9 123 1-138 57-191 (299)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.91 E-value=4.3e-24 Score=165.57 Aligned_cols=109 Identities=25% Similarity=0.411 Sum_probs=100.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||||.++..+++. +..+|+++|+|+.|++.|+++..+. .+++|+++|++++| |++++||+|.+.+.|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeehh
Confidence 3468999999999999999987 5568999999999999999999653 44999999999999 999999999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 123 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~ 123 (210)
+++ .+.+++|+|++|+|||||+++++++..|..
T Consensus 130 rnv-------~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 130 RNV-------TDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred hcC-------CCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 999 999999999999999999999999998764
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.91 E-value=1.9e-24 Score=168.79 Aligned_cols=128 Identities=24% Similarity=0.459 Sum_probs=89.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||||.++..+++. +..+|+++|+|+.|++.|+++.+. ..+++++++|++++| +++++||+|++.+.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FPDNSFDAVTCSFG 125 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEEES-
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CCCCceeEEEHHhh
Confidence 3458999999999999999876 335899999999999999999853 368999999999999 99999999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEEEEEecCCC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPG 146 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~ 146 (210)
++.+ .+..++++|++|+|||||++++++++.|.... + +..+.++.. ..+|..+
T Consensus 126 lrn~-------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~--~-~~~~~~y~~-~ilP~~g 178 (233)
T PF01209_consen 126 LRNF-------PDRERALREMYRVLKPGGRLVILEFSKPRNPL--L-RALYKFYFK-YILPLIG 178 (233)
T ss_dssp GGG--------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHH--H-HHHHHH-----------
T ss_pred HHhh-------CCHHHHHHHHHHHcCCCeEEEEeeccCCCCch--h-hceeeeeec-ccccccc
Confidence 9988 88999999999999999999999999876532 1 234445554 5666644
No 3
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.87 E-value=4.9e-23 Score=157.34 Aligned_cols=170 Identities=21% Similarity=0.241 Sum_probs=125.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..++|||+|||.|.+++.+++.|. +|+|+|.++.+++.|+.+.... -++++.+..++++. ...++||+|+|..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHHHc
Confidence 347899999999999999999996 9999999999999999887443 45678888888876 55689999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEEEEEecC--CCCCCCCCCC---------
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIAR--PGFEKPGGCS--------- 154 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~--------- 154 (210)
+ +++..+++++.+.+||||.+++.+.++-. ..++......-++ +..+|+ +.+..+.++.
T Consensus 137 v-------~dp~~~~~~c~~lvkP~G~lf~STinrt~--ka~~~~i~~ae~v-l~~vP~gTH~~~k~irp~El~~~~~~~ 206 (243)
T COG2227 137 V-------PDPESFLRACAKLVKPGGILFLSTINRTL--KAYLLAIIGAEYV-LRIVPKGTHDYRKFIKPAELIRWLLGA 206 (243)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEeccccCH--HHHHHHHHHHHHH-HHhcCCcchhHHHhcCHHHHHHhcccC
Confidence 9 99999999999999999999998877422 1111111111111 234444 3333333333
Q ss_pred ---CCCccccCCcccCCCCCCccccccCCCCceEEEEEEecC
Q 028385 155 ---SSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMN 193 (210)
Q Consensus 155 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~K~~ 193 (210)
.....++.++|+...+.+.. +.+.+|+..++|+.
T Consensus 207 ~~~~~~~~g~~y~p~~~~~~l~~-----~~~vNy~~~~~~~~ 243 (243)
T COG2227 207 NLKIIDRKGLTYNPLTNSWKLSN-----DVSVNYMVHAQRPA 243 (243)
T ss_pred CceEEeecceEeccccceEEecC-----CccceEEEEeecCC
Confidence 22334567788877776655 56889999998863
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.87 E-value=1.7e-21 Score=131.25 Aligned_cols=95 Identities=26% Similarity=0.440 Sum_probs=84.4
Q ss_pred EEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCC
Q 028385 12 CRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN 91 (210)
Q Consensus 12 LdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~ 91 (210)
||+|||+|..+..+++.+..+++++|+++.+++.++++... .++.+.++|+.+++ +++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~-~~~~sfD~v~~~~~~~~~----- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLP-FPDNSFDVVFSNSVLHHL----- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSS-S-TT-EEEEEEESHGGGS-----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCc-cccccccccccccceeec-----
Confidence 89999999999999999555999999999999999998854 45669999999999 999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCcEEEE
Q 028385 92 APISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 92 ~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
++..++++++.|+|||||++++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999999975
No 5
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.85 E-value=2.6e-21 Score=157.43 Aligned_cols=169 Identities=16% Similarity=0.172 Sum_probs=120.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||||||+|.++..+++.+. +|+|+|.++.+++.|+++.... .++.++++|+++++ +.+++||+|++..+++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hccCCCCEEEEhhHHH
Confidence 35899999999999999988765 8999999999999999876322 47899999999988 7788999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhh--HhhhcccccceEEEEEEecC--CCCCCCCCCC------
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR--MIHLKWKVYNWKIELYIIAR--PGFEKPGGCS------ 154 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~------ 154 (210)
|+ .+...+++++.++|||||.+++.+.+..... .... . ..++ ...+|. +.+..+..+.
T Consensus 210 Hv-------~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~-~---~eyi-~~~lp~gth~~~~f~tp~eL~~lL 277 (322)
T PLN02396 210 HV-------ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIV-G---AEYI-LRWLPKGTHQWSSFVTPEELSMIL 277 (322)
T ss_pred hc-------CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhh-h---HHHH-HhcCCCCCcCccCCCCHHHHHHHH
Confidence 99 8899999999999999999998886643211 0000 0 0000 011222 1111111111
Q ss_pred ------CCCccccCCcccCCCCCCccccccCCCCceEEEEEEecCCc
Q 028385 155 ------SSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDM 195 (210)
Q Consensus 155 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~K~~~~ 195 (210)
.....++.+.|+...+.+.. +..++|+..++|..+.
T Consensus 278 ~~aGf~i~~~~G~~~~p~~~~w~~~~-----~~~~ny~~~~~k~~~~ 319 (322)
T PLN02396 278 QRASVDVKEMAGFVYNPITGRWLLSD-----DISVNYIAYGTKRKDL 319 (322)
T ss_pred HHcCCeEEEEeeeEEcCcCCeEEecC-----CCceeehhheecCccC
Confidence 11223455667776666543 5688999999997654
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.85 E-value=1.6e-20 Score=149.49 Aligned_cols=108 Identities=19% Similarity=0.291 Sum_probs=95.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhc-----CCCCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYE-----EIPQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~-----~~~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
...+|||+|||+|.++..+++. + ..+|+|+|+|++|++.|+++.. ..++++++++|+.++| +++++||+|++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~~ 151 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAITM 151 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEEE
Confidence 3468999999999999988875 3 3589999999999999987753 1257999999999999 99999999999
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.+++|++ .++.+++++++|+|||||.+++.++..+.
T Consensus 152 ~~~l~~~-------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 152 GYGLRNV-------VDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred ecccccC-------CCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 9999999 88999999999999999999999988765
No 7
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.82 E-value=1.3e-19 Score=138.96 Aligned_cols=115 Identities=17% Similarity=0.295 Sum_probs=99.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-C------CCcEEEEeCCHHHHHHHHHhhcCC-----CCcEEEEcccCCCCCCCCCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-G------YEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDES 73 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~------~~~v~~vD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~ 73 (210)
...+++||++||||.++..+.++ + ..+|+.+|+||.|+..++++.++. ..+.|+++|++++| |++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~s 177 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDDS 177 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCCc
Confidence 34489999999999999999886 2 257999999999999999988432 35899999999999 99999
Q ss_pred ccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch-hhHhhh
Q 028385 74 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK-ARMIHL 128 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~-~~~~~~ 128 (210)
||.....+.+..+ .++++.+++++|+|||||+|++.+++.-+ ..+.++
T Consensus 178 ~D~yTiafGIRN~-------th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~f 226 (296)
T KOG1540|consen 178 FDAYTIAFGIRNV-------THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWF 226 (296)
T ss_pred ceeEEEecceecC-------CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHH
Confidence 9999988888777 89999999999999999999999998655 344444
No 8
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.82 E-value=1.1e-19 Score=132.67 Aligned_cols=142 Identities=23% Similarity=0.418 Sum_probs=114.4
Q ss_pred CEEEeCCCCchhHHHHHHcCCCc-EEEEeCCHHHHHHHHHhhcC--CCC-cEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYED-IVNIDISSVAIDMMKMKYEE--IPQ-LKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~-v~~vD~s~~~~~~a~~~~~~--~~~-v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+|||+|||+|.+...+++.++.. ++|+|+|+.+++.|+...+. .++ ++|.+.|+.+.. +..+.||+|+.++++++
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~-~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD-FLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-ccccceeEEeecCceee
Confidence 99999999999999999987644 99999999999999887743 244 999999999876 88899999999999999
Q ss_pred hccC-CCchHHHHHHHHHHHHhccCCcEEEEEEcCCc-hhhHhhhcccccceEEEEEEecCCCCCCCCCCCC
Q 028385 86 LMCG-TNAPISASQMLGEVSRLLKPGGIYMLITYGDP-KARMIHLKWKVYNWKIELYIIARPGFEKPGGCSS 155 (210)
Q Consensus 86 ~~~~-~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 155 (210)
+..+ ......+..++..+.++|+|||+|+|.+++-. ......+ ...++.+ +..+|.|.|.|+++.|.
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f--~~~~f~~-~~tvp~ptF~FgG~~G~ 217 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEF--ENFNFEY-LSTVPTPTFMFGGSVGS 217 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHH--hcCCeEE-EEeeccceEEecccccc
Confidence 9644 44444557889999999999999999998742 2333333 1233444 58899999999988775
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.81 E-value=2.8e-19 Score=147.45 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=93.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||||||+|.++..+++....+|+|+|+|+.|++.++++.+.. ++++|+++|+.+++ +++++||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEECCc
Confidence 344689999999999999999864448999999999999999876432 57999999999998 99999999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++|+ .+..+++++++|+|||||.+++.++.
T Consensus 196 ~~h~-------~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 196 GEHM-------PDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hhcc-------CCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999 88899999999999999999998753
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.81 E-value=8.1e-19 Score=122.12 Aligned_cols=104 Identities=25% Similarity=0.295 Sum_probs=85.6
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhh---cCCCCcEEEEccc-CCCCCCCCCcccEEEECC-
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKY---EEIPQLKYLQMDV-RDMSFFEDESFDAVIDKG- 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~---~~~~~v~~~~~d~-~~~~~~~~~~fD~Vi~~~- 81 (210)
..+|||+|||+|.++..+++. +..+++++|+|+.|++.|+++. ...++++++++|+ .... ..+.||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD--FLEPFDLVICSGF 79 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT--TSSCEEEEEECSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc--cCCCCCEEEECCC
Confidence 468999999999999999993 5558999999999999999998 2237999999999 3333 345699999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+++++. +.++..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~----~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLL----PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCC----HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccc----chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 555431 22678899999999999999998865
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.80 E-value=8.1e-19 Score=139.90 Aligned_cols=109 Identities=13% Similarity=0.258 Sum_probs=95.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
....+|||||||+|..+..+++....+|+++|+|+.|++.|+++....+++.+.++|+.+.+ +++++||+|++..+++|
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~-~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD-FPENTFDMIYSRDAILH 129 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC-CCCCCeEEEEEhhhHHh
Confidence 34568999999999999988775344899999999999999998765567999999999888 88999999999998888
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+ +..+...++++++++|||||.+++.++..
T Consensus 130 ~-----~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 130 L-----SYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred C-----CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 7 44588999999999999999999988643
No 12
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.79 E-value=1.4e-18 Score=132.89 Aligned_cols=104 Identities=17% Similarity=0.300 Sum_probs=89.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++... ..++++.+.|+.+.+ + +++||+|++..++|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~I~~~~~~~ 106 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT-F-DGEYDFILSTVVLM 106 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC-c-CCCcCEEEEecchh
Confidence 457899999999999999999876 899999999999999987643 356889999998876 5 46799999999998
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++ +..+...+++++.++|||||.++++.+
T Consensus 107 ~~-----~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 107 FL-----EAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred hC-----CHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 87 556789999999999999999766543
No 13
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.79 E-value=2.8e-19 Score=133.06 Aligned_cols=110 Identities=20% Similarity=0.230 Sum_probs=96.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcE-EEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLK-YLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~-~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
.+.+.|||+|||||..-..+-..+...|+++|.++.|-+.+.++.++. .++. |+.++.++++.++++++|+|++..+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 345689999999999977665556668999999999999999888543 5676 9999999998889999999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
|... +++.+.|+++.|+|+|||+++++++....
T Consensus 155 LCSv-------e~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 155 LCSV-------EDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred Eecc-------CCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 9998 99999999999999999999999998533
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.79 E-value=1e-18 Score=128.33 Aligned_cols=105 Identities=25% Similarity=0.427 Sum_probs=90.9
Q ss_pred CCCCEEEeCCCCchhHHHHHH-c-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCC-CCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVK-D-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSF-FEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~-~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~-~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++ . +..+++|+|+|+.|++.|+++.+ ..++++|.++|+.+++. ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 457899999999999999994 3 44589999999999999999764 34689999999999651 22 7999999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+++|+ .+...+++++.++||+||.+++.++.
T Consensus 82 ~l~~~-------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHF-------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGT-------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhc-------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999 88999999999999999999988876
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.79 E-value=6.1e-19 Score=140.19 Aligned_cols=106 Identities=15% Similarity=0.249 Sum_probs=93.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++.... ++++++++|+.+++.+.+++||+|++..++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 346899999999999999999875 8999999999999999887532 578999999988642567899999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+|+ .++..+++++.++|||||.++++.++.
T Consensus 123 ~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 123 EWV-------ADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred Hhh-------CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 999 788899999999999999998877664
No 16
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.78 E-value=1.8e-18 Score=137.10 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=91.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+.+.+. +++++|+|+.|++.++++.. ...++++|+.+++ +++++||+|+++.+++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~-~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA---ADHYLAGDIESLP-LATATFDLAWSNLAVQWC 116 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCc-CCCCcEEEEEECchhhhc
Confidence 346899999999999999888764 89999999999999998763 3578999999998 889999999999999998
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.+...++.++.++|||||.+++.++..
T Consensus 117 -------~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 117 -------GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred -------CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 889999999999999999999987664
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.78 E-value=3.5e-18 Score=133.82 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=94.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++. +..+++|+|+|+.+++.++++.+. .++++++++|+.+++ +++++||+|++..+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVTIGFG 123 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEEEecc
Confidence 3468999999999999999875 335899999999999999988743 367999999999988 88899999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
++++ ++..++++++.++|||||.+++.+...+.
T Consensus 124 l~~~-------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 124 LRNV-------PDYMQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred cccC-------CCHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 9998 78889999999999999999988876544
No 18
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.77 E-value=5.5e-18 Score=129.45 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=87.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
....+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++.... -++.+...|+...+ ++ ++||+|++..++|
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~~-~~fD~I~~~~~~~ 105 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA-LN-EDYDFIFSTVVFM 105 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc-cc-CCCCEEEEecccc
Confidence 3457999999999999999999876 8999999999999998776321 24778888887665 43 5899999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++ +..+...++++++++|||||+++++.+
T Consensus 106 ~~-----~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 106 FL-----QAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred cC-----CHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 87 556788999999999999999766653
No 19
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.77 E-value=1.1e-18 Score=119.47 Aligned_cols=95 Identities=27% Similarity=0.548 Sum_probs=81.0
Q ss_pred EEEeCCCCchhHHHHHHcC----CCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCCCCCcccEEEECCc-cc
Q 028385 11 TCRRAAPSIVMSEDMVKDG----YEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGT-LD 84 (210)
Q Consensus 11 vLdiGcG~G~~~~~l~~~~----~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~-l~ 84 (210)
|||+|||+|..+..+++.. ..+++++|+|+.|++.++++... ..++++++.|+.+++ +.+++||+|++++. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~-~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP-FSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH-HHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc-ccCCCeeEEEEcCCccC
Confidence 7999999999999998762 25899999999999999998843 258999999999988 78889999999654 99
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGG 111 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG 111 (210)
|+ +.++..++++++.++|||||
T Consensus 80 ~~-----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HL-----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GS-----SHHHHHHHHHHHHHTEEEEE
T ss_pred CC-----CHHHHHHHHHHHHHHhCCCC
Confidence 98 77899999999999999998
No 20
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.76 E-value=5.1e-18 Score=134.88 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=86.4
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
....+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++ +++++++|+.+++ ++++||+|+++.++|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~--~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWK--PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCC--CCCCceEEEEehhhh
Confidence 34568999999999999999886 345899999999999999763 5789999998764 467999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+ .+..+++++++++|||||.+++...
T Consensus 101 ~~-------~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 101 WV-------PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hC-------CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 99 7889999999999999999987643
No 21
>PRK05785 hypothetical protein; Provisional
Probab=99.76 E-value=5.2e-18 Score=132.32 Aligned_cols=100 Identities=19% Similarity=0.207 Sum_probs=86.1
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
..+|||+|||||.++..+++....+|+|+|+|++|++.|+++. .++++|++++| +++++||+|++.++++|+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp-~~d~sfD~v~~~~~l~~~- 123 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALP-FRDKSFDVVMSSFALHAS- 123 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCC-CCCCCEEEEEecChhhcc-
Confidence 4689999999999999998873248999999999999998752 46789999999 999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 123 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~ 123 (210)
.+..+++++++|+|||. +.+++++.|..
T Consensus 124 ------~d~~~~l~e~~RvLkp~--~~ile~~~p~~ 151 (226)
T PRK05785 124 ------DNIEKVIAEFTRVSRKQ--VGFIAMGKPDN 151 (226)
T ss_pred ------CCHHHHHHHHHHHhcCc--eEEEEeCCCCc
Confidence 89999999999999993 33566666653
No 22
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.75 E-value=2.4e-18 Score=132.74 Aligned_cols=151 Identities=20% Similarity=0.209 Sum_probs=108.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--------CcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP--------QLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
++|||+|||+|.+++.|++.|. +|+|+|.++.|++.|+++....| ++.+.+.|++... +.||+|+|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----cccceeeeH
Confidence 5799999999999999999986 99999999999999999853221 3567777777654 349999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEEEEEecC--CCCCCCCCCC----
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIAR--PGFEKPGGCS---- 154 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~---- 154 (210)
.+++|+ .+++.++..+.++|||||.+++.+.++- ...++.......++ ++++|+ +.|+.+..+.
T Consensus 166 evleHV-------~dp~~~l~~l~~~lkP~G~lfittinrt--~lS~~~~i~~~E~v-l~ivp~Gth~~ekfi~p~e~~~ 235 (282)
T KOG1270|consen 166 EVLEHV-------KDPQEFLNCLSALLKPNGRLFITTINRT--ILSFAGTIFLAEIV-LRIVPKGTHTWEKFINPEELTS 235 (282)
T ss_pred HHHHHH-------hCHHHHHHHHHHHhCCCCceEeeehhhh--HHHhhccccHHHHH-HHhcCCCCcCHHHcCCHHHHHH
Confidence 999999 9999999999999999999999887652 22222122222222 345565 3344333332
Q ss_pred --------CCCccccCCcccCCCCCCcc
Q 028385 155 --------SSMKSYLEPVPITDDGQLPA 174 (210)
Q Consensus 155 --------~~~~~~~~~~~~~~~~~~~~ 174 (210)
...+-+.-++|++..+....
T Consensus 236 ~l~~~~~~v~~v~G~~y~p~s~~w~~~~ 263 (282)
T KOG1270|consen 236 ILNANGAQVNDVVGEVYNPISGQWLWSK 263 (282)
T ss_pred HHHhcCcchhhhhccccccccceeEecc
Confidence 33444555666666555444
No 23
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.75 E-value=1.3e-17 Score=132.66 Aligned_cols=100 Identities=17% Similarity=0.289 Sum_probs=87.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
....+|||||||+|.++..+++. +..+++|+|+|+.|++.++++. +++.+..+|+..+. ++++||+|+++.++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~--~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQ--PPQALDLIFANASLQ 104 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccC--CCCCccEEEEccChh
Confidence 44568999999999999999876 4458999999999999999876 57899999998764 456999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+ .+...+++++.++|||||.+++..
T Consensus 105 ~~-------~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 105 WL-------PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hC-------CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 99 788999999999999999997753
No 24
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.75 E-value=1.4e-17 Score=131.79 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=88.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
...+|||+|||+|..+..+++. +..+++++|+|+.|++.|+++.... .+++++++|+.+++ ++ .+|+|+++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~D~vv~~ 132 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-IE--NASMVVLN 132 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-CC--CCCEEehh
Confidence 3468999999999999888762 4458999999999999999988532 47999999998877 54 49999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.++||+ +..+...++++++++|||||.+++.+.
T Consensus 133 ~~l~~l-----~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFL-----EPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhC-----CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999998 445678999999999999999999874
No 25
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.75 E-value=1.2e-17 Score=136.64 Aligned_cols=102 Identities=21% Similarity=0.198 Sum_probs=88.4
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh--c-CCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY--E-EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~--~-~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||||||+|.++..+++.+...|+|+|.|+.++..++... . ...++.++.+|+++++ + +++||+|++.++++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-A-LKAFDTVFSMGVLY 200 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-C-cCCcCEEEECChhh
Confidence 4689999999999999999987767999999999997654432 2 2357999999999998 6 78999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+ .++..++++++++|||||.+++.+.
T Consensus 201 H~-------~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 201 HR-------RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred cc-------CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 99 8889999999999999999987653
No 26
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.74 E-value=2.1e-17 Score=142.25 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=93.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||||||+|..+..+++....+++|+|+|+.+++.|+++.... .+++|.++|+.+.+ +++++||+|++..+++|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-YPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-CCCCCEEEEEECCcccc
Confidence 34689999999999999888864458999999999999998877543 57899999999888 88889999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+ .+..+++++++++|||||.+++.++.
T Consensus 345 ~-------~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 345 I-------QDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred c-------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 9 88999999999999999999988764
No 27
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.74 E-value=4.5e-17 Score=125.05 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=88.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|||+|.++..+++. +..+++|+|+|+.|++.|+++. +++.+.++|+.+ + +++++||+|++.++++|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~-~-~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD-P-FKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC-C-CCCCCEEEEEECChhhh
Confidence 3458999999999999999886 4568999999999999999876 567889999988 7 88999999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+ ++.+..++++++.|++ ++.+++.++-.|
T Consensus 118 l-----~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 118 I-----NPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred C-----CHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 8 5578899999999997 568878776443
No 28
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.74 E-value=2.8e-17 Score=134.38 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=92.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|||+|.++..+++. +..+++++|.|+.|++.|+++.. ..+++++.+|+.+++ +++++||+|++..++++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp-~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLP-FPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCC-CCCCceeEEEEcChhhh
Confidence 3468999999999999888775 44589999999999999998754 257899999999988 88899999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+ .+...++++++++|||||.++++....+
T Consensus 191 ~-------~d~~~~L~e~~rvLkPGG~LvIi~~~~p 219 (340)
T PLN02490 191 W-------PDPQRGIKEAYRVLKIGGKACLIGPVHP 219 (340)
T ss_pred C-------CCHHHHHHHHHHhcCCCcEEEEEEecCc
Confidence 8 7788999999999999999988764433
No 29
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.73 E-value=4.5e-17 Score=128.26 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=89.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
...+|||+|||+|.++..+++. +..+++|+|+|+.|++.|+++.+.. .+++++++|+.+++ ++ .+|+|++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~d~v~~~ 129 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-IK--NASMVILN 129 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CC--CCCEEeee
Confidence 4468999999999999999874 3558999999999999999887542 46899999999887 54 48999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.++||+ +..+...++++++++|||||.+++.+..
T Consensus 130 ~~l~~~-----~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 130 FTLQFL-----PPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred cchhhC-----CHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 999998 5567889999999999999999988753
No 30
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.73 E-value=5.5e-17 Score=131.05 Aligned_cols=103 Identities=15% Similarity=0.216 Sum_probs=88.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.... .++++...|+...+ + +++||+|++..++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-I-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-c-cCCccEEEEcchhhh
Confidence 345899999999999999999876 8999999999999998876432 36888888887765 4 678999999999998
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ +.++...+++++.++|||||+++++.
T Consensus 197 l-----~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 197 L-----NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred C-----CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 55688999999999999999977654
No 31
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.73 E-value=4.7e-17 Score=127.65 Aligned_cols=103 Identities=24% Similarity=0.398 Sum_probs=92.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.++..+++.+ ..+++++|+++.+++.++++.. +++.++.+|+.+.+ +++++||+|++..+++|+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~-~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLP-LEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCC-CCCCceeEEEEhhhhhhc
Confidence 4689999999999999998873 3469999999999999988775 47899999999988 888999999999999998
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.+...+++++.++|||||.+++.++..
T Consensus 112 -------~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 112 -------DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred -------cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 888999999999999999999877654
No 32
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.73 E-value=2.5e-17 Score=121.52 Aligned_cols=100 Identities=26% Similarity=0.426 Sum_probs=85.2
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.....+|||+|||+|.++..+.+.+. +++|+|+++.+++. .++.....+....+ .++++||+|+++.+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--------RNVVFDNFDAQDPP-FPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--------TTSEEEEEECHTHH-CHSSSEEEEEEESSGG
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--------hhhhhhhhhhhhhh-ccccchhhHhhHHHHh
Confidence 45667999999999999999988887 99999999999988 23444544444444 6788999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
|+ .++..+++++.++|||||++++.+....
T Consensus 90 ~~-------~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 90 HL-------PDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp GS-------SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred hc-------ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99 8999999999999999999999887653
No 33
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.72 E-value=5.2e-17 Score=131.79 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=86.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHh---hcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMK---YEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..++..+...|+|+|.|+.|+.+++.. .....++.+..+++.+++ . .++||+|++.++++
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~-~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-E-LYAFDTVFSMGVLY 199 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-C-CCCcCEEEEcchhh
Confidence 468999999999999999888766799999999999865432 222357888999999887 4 35899999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+ .++..++++++++|||||.+++.+.
T Consensus 200 H~-------~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 200 HR-------KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred cc-------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 99 8889999999999999999988654
No 34
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.72 E-value=7.4e-19 Score=119.85 Aligned_cols=95 Identities=25% Similarity=0.399 Sum_probs=63.3
Q ss_pred EEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC--CcEEEEcccCCCC-CCCCCcccEEEECCccchhc
Q 028385 12 CRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMS-FFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 12 LdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~--~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l~~~~ 87 (210)
||+|||+|.++..+++. +..+++++|+|+.|++.++++..+.. +......+..+.. ....++||+|++..++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999887 45589999999999988888875442 2333333333321 1123699999999999999
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
++...++++++++|||||++
T Consensus 80 ------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ------S-HHHHHHHHTTT-TSS-EE
T ss_pred ------hhHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999986
No 35
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.72 E-value=7e-17 Score=129.52 Aligned_cols=105 Identities=12% Similarity=0.223 Sum_probs=90.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|..+..+++. + ..+|+++|+++.|++.|+++... .+++++..+|+.+++ +++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-VADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-CCCCceeEEEEcCc
Confidence 3458999999999988777664 3 23799999999999999987643 368899999999988 88889999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+++. .+..+++++++++|||||++++.++.
T Consensus 156 ~~~~-------~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 156 INLS-------PDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred ccCC-------CCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 9988 77889999999999999999987653
No 36
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.72 E-value=6.3e-17 Score=121.88 Aligned_cols=107 Identities=21% Similarity=0.331 Sum_probs=87.5
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
+....+++||+|||.|..+..++++|+ .|+++|+|+.+++.+++..+. .-+++..+.|+.+.. ++ +.||+|++..+
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~-~~-~~yD~I~st~v 103 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD-FP-EEYDFIVSTVV 103 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--T-TTEEEEEEESS
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc-cc-CCcCEEEEEEE
Confidence 445678999999999999999999999 899999999999988776632 235889999998877 54 68999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++++ .++...++++++...++|||++++.++
T Consensus 104 ~~fL-----~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 104 FMFL-----QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp GGGS------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eccC-----CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 9988 678889999999999999999988664
No 37
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.72 E-value=1.2e-16 Score=123.28 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=89.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--------------CCCCcEEEEcccCCCCCCCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--------------EIPQLKYLQMDVRDMSFFEDE 72 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--------------~~~~v~~~~~d~~~~~~~~~~ 72 (210)
..++|||+|||.|..+..++++|. +|+|+|+|+.+++.+.+... ...++++.++|+.+++....+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 346999999999999999999998 89999999999998644321 124689999999887611246
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.||.|++..+++|+ +......+++.+.++|||||.+++.++.
T Consensus 113 ~fD~i~D~~~~~~l-----~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 113 PVDAVYDRAALIAL-----PEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CcCEEEechhhccC-----CHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 79999999999998 7788899999999999999987777654
No 38
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.71 E-value=5.7e-17 Score=121.01 Aligned_cols=109 Identities=19% Similarity=0.340 Sum_probs=86.6
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
|...-.++||+|||.|.++..|+... .+++++|+|+.+++.|+++....++|+|.+.|+.+. .+.++||+|+++.++
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~--~P~~~FDLIV~SEVl 116 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF--WPEGRFDLIVLSEVL 116 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEEEES-G
T ss_pred CccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC--CCCCCeeEEEEehHh
Confidence 34444679999999999999999885 489999999999999999999889999999999775 478999999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+++ .+.+++..++.++...|+|||.+++.+..
T Consensus 117 YYL----~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 117 YYL----DDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp GGS----SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HcC----CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 988 12357889999999999999999998754
No 39
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.71 E-value=2.3e-16 Score=119.31 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=91.6
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|..+..+++. +..+|+++|.++.|++.|+++.+.. ++++++++|+.+++ . +++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-Q-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-C-CCCccEEEEcc---
Confidence 468999999999999988864 5568999999999999999887443 56999999999987 5 77999999864
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 138 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~ 138 (210)
+ .++..++++++++|||||++++............. ....+|.+.
T Consensus 121 -~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~-~~~~~~~~~ 165 (187)
T PRK00107 121 -V-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAEL-PKALGGKVE 165 (187)
T ss_pred -c-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHH-HHhcCceEe
Confidence 2 45678999999999999999888654333333222 233467753
No 40
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.71 E-value=2.9e-17 Score=123.25 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=93.2
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
|.....+|.|+|||+|..++.++++ +...++|+|.|++|++.|+++. ++++|..+|+.++. +...+|+++++.+
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~--p~~~~dllfaNAv 101 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK--PEQPTDLLFANAV 101 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC--CCCccchhhhhhh
Confidence 5566678999999999999999987 6679999999999999998887 88999999999986 7789999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+++ ++..+++.++...|.|||.+.+.-
T Consensus 102 lqWl-------pdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 102 LQWL-------PDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhhc-------cccHHHHHHHHHhhCCCceEEEEC
Confidence 9999 999999999999999999997643
No 41
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=1.5e-16 Score=125.84 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=95.9
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
..+..+|||||||.|.++..+++.-..+|+|+++|+++.+.++++... . .++++...|..++. +.||-|++.+
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----e~fDrIvSvg 145 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----EPFDRIVSVG 145 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----cccceeeehh
Confidence 345678999999999999999998545999999999999999997743 3 48999999988865 3499999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 123 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~ 123 (210)
+++|+ +.++...+++.++++|+|||.+++.+++.+..
T Consensus 146 mfEhv-----g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~ 182 (283)
T COG2230 146 MFEHV-----GKENYDDFFKKVYALLKPGGRMLLHSITGPDQ 182 (283)
T ss_pred hHHHh-----CcccHHHHHHHHHhhcCCCceEEEEEecCCCc
Confidence 99999 66889999999999999999999988877653
No 42
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.70 E-value=1.3e-16 Score=124.34 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=88.0
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+|||||||+|.++..+++. +..+++|+|+|+.+++.++++.+.. +++++...|+...+ ++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-FP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-CC-CCCCEeehHHHHHh
Confidence 6999999999999999876 3458999999999999999987432 57899999997766 54 58999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+ .+...++++++++|||||.+++.++.
T Consensus 80 ~-------~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 80 I-------KDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred C-------CCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 9 78899999999999999999988753
No 43
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.69 E-value=2.3e-16 Score=125.76 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=86.1
Q ss_pred CCCCEEEeCCCCch----hHHHHHHc-C-----CCcEEEEeCCHHHHHHHHHhhcC------C-----------------
Q 028385 7 GTRDTCRRAAPSIV----MSEDMVKD-G-----YEDIVNIDISSVAIDMMKMKYEE------I----------------- 53 (210)
Q Consensus 7 ~~~~vLdiGcG~G~----~~~~l~~~-~-----~~~v~~vD~s~~~~~~a~~~~~~------~----------------- 53 (210)
...+|+|+|||+|. ++..+++. + ..+|+|+|+|+.|++.|++.... .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 44455443 1 23799999999999999986410 0
Q ss_pred ------CCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 54 ------PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 54 ------~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.++.|.+.|+.+.+ ++.++||+|+|.++++|+ +.++..+++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf-----~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYF-----DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhC-----CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 36899999999987 678899999999999998 55678899999999999999998754
No 44
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.69 E-value=5.2e-16 Score=117.05 Aligned_cols=117 Identities=13% Similarity=0.155 Sum_probs=87.2
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..++.. +..+|+++|.|+.|++.++++.+. .++++++++|+.+++ ..++||+|++.. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc--ccCCccEEEehh-hh
Confidence 568999999999999988765 345899999999999998877643 357999999998865 367999999865 33
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKI 137 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~ 137 (210)
+....++.+.++|||||.+++..-................|.+
T Consensus 120 ----------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~ 162 (181)
T TIGR00138 120 ----------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGV 162 (181)
T ss_pred ----------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCc
Confidence 3456788889999999999877533333333333233333444
No 45
>PRK08317 hypothetical protein; Provisional
Probab=99.69 E-value=5.1e-16 Score=121.67 Aligned_cols=105 Identities=22% Similarity=0.346 Sum_probs=92.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhc-CCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYE-EIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|.++..+++. +..+++++|+++.+++.++++.. ..+++.+...|+.+.+ +++++||+|++..+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~ 96 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-FPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC-CCCCCceEEEEech
Confidence 34568999999999999999876 34589999999999999998732 2367899999999888 88899999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++|+ .+...+++++.++|||||.+++.++
T Consensus 97 ~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 97 LQHL-------EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred hhcc-------CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 9999 8899999999999999999988764
No 46
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.68 E-value=2.8e-16 Score=125.45 Aligned_cols=107 Identities=18% Similarity=0.256 Sum_probs=85.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||||||.|.++..+++. +. +|+|+++|++..+.++++.... .++++...|..+++ .+||.|++..
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~----~~fD~IvSi~ 135 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP----GKFDRIVSIE 135 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S-SEEEEES
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC----CCCCEEEEEe
Confidence 34568999999999999999998 55 8999999999999999988544 46899999998876 2999999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+++|+ +..+...+++++.++|||||.+++..++.+.
T Consensus 136 ~~Ehv-----g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 136 MFEHV-----GRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp EGGGT-----CGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred chhhc-----ChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 99999 6788999999999999999999886665433
No 47
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.67 E-value=7.3e-16 Score=132.75 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=90.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC--CCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD--MSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~--~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++... +++|+|+++.|++.+++.....+++.++++|+.+ ++ +++++||+|++..+++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-ISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-CCCCCEEEEehhhhHH
Confidence 345899999999999999998754 8999999999999887655444789999999964 56 7889999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+ +.....++++++.++|||||++++.+.
T Consensus 115 ~l-----~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 115 YL-----SDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred hC-----CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 98 445578999999999999999988764
No 48
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.66 E-value=1.8e-15 Score=117.28 Aligned_cols=105 Identities=14% Similarity=0.174 Sum_probs=87.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--------------CCCCcEEEEcccCCCCCCCCCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--------------EIPQLKYLQMDVRDMSFFEDES 73 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--------------~~~~v~~~~~d~~~~~~~~~~~ 73 (210)
..+|||+|||.|..+..++++|. +|+|+|+|+.+++.+.+... ...++++.++|+.+++......
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 46999999999999999999988 89999999999998743221 1256899999999875122358
Q ss_pred ccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 74 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
||.|+...+++|+ +.+...++++.+.++|||||.++++++
T Consensus 117 fd~v~D~~~~~~l-----~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 117 VDAVYDRAALIAL-----PEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred eeEEEehHhHhhC-----CHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 9999999999998 778899999999999999997666443
No 49
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.66 E-value=1.5e-15 Score=117.96 Aligned_cols=108 Identities=26% Similarity=0.406 Sum_probs=94.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++... .+++++|+++.+++.++++.....++++..+|+.+.+ ++.++||+|+++..++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP-FEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC-CCCCcEEEEEEeeeeC
Confidence 457899999999999999988743 4899999999999999988753357899999999988 7788999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
++ .+...+++++.++|+|||.+++.++..+.
T Consensus 118 ~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 148 (223)
T TIGR01934 118 NV-------TDIQKALREMYRVLKPGGRLVILEFSKPA 148 (223)
T ss_pred Cc-------ccHHHHHHHHHHHcCCCcEEEEEEecCCC
Confidence 88 78899999999999999999998876543
No 50
>PRK06202 hypothetical protein; Provisional
Probab=99.66 E-value=1.7e-15 Score=118.83 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=86.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
.+..+|||+|||+|.++..+++. + ..+++|+|+|+.|++.|+++... +++.+...+...++ ..+++||+|+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~-~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELV-AEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEeccccc-ccCCCccEEEEC
Confidence 34568999999999999888752 2 24899999999999999887543 46788888887777 678899999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
.++||+ +.++..++++++.|+++ |.+++.++..+
T Consensus 137 ~~lhh~-----~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 137 HFLHHL-----DDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CeeecC-----ChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 999999 33446789999999998 66667777665
No 51
>PRK06922 hypothetical protein; Provisional
Probab=99.66 E-value=1.2e-15 Score=132.32 Aligned_cols=112 Identities=24% Similarity=0.248 Sum_probs=91.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC-CCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l 83 (210)
+..+|||+|||+|..+..+++. +..+++|+|+|+.|++.|+++.... .++.++++|+.+++ .+++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 4578999999999999888875 4568999999999999999876432 46788999998865 2678899999999999
Q ss_pred chhcc-C-----CCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMC-G-----TNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~-~-----~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|++.. . ..+..+..+++++++++|||||.+++.+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 87521 0 11346889999999999999999999874
No 52
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.66 E-value=1.7e-15 Score=118.83 Aligned_cols=108 Identities=23% Similarity=0.350 Sum_probs=94.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++.. ..+++++|+++.+++.++++... ..++.+..+|+.+.+ +..++||+|++..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~ 129 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAF 129 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEec
Confidence 34689999999999999998874 36899999999999999998754 257899999999887 7788999999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+++++ .+...+++++.++|+|||.+++.++..+.
T Consensus 130 ~l~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~~~~ 163 (239)
T PRK00216 130 GLRNV-------PDIDKALREMYRVLKPGGRLVILEFSKPT 163 (239)
T ss_pred ccccC-------CCHHHHHHHHHHhccCCcEEEEEEecCCC
Confidence 99988 78899999999999999999988776543
No 53
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.66 E-value=1.7e-15 Score=126.63 Aligned_cols=105 Identities=18% Similarity=0.262 Sum_probs=88.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||||||+|.++..+++....+|+|+|+|+.+++.|+++.+. .++++...|..++ +++||.|++..+++|+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~-l~v~~~~~D~~~l----~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG-LPVEIRLQDYRDL----NGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-CeEEEEECchhhc----CCCCCEEEEeCchhhC
Confidence 3458999999999999999886444899999999999999998854 3578888887654 3689999999999998
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+..+...+++++.++|||||.+++.+++.+
T Consensus 242 -----g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 242 -----GPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred -----ChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 556788999999999999999998876543
No 54
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.65 E-value=1.7e-15 Score=121.56 Aligned_cols=96 Identities=25% Similarity=0.378 Sum_probs=79.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C---CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G---YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~---~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++. + ..+++|+|+|+.|++.|+++. +++.|.++|+.++| +++++||+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp-~~~~sfD~I~~~~~ 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLP-FADQSLDAIIRIYA 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCC-CcCCceeEEEEecC
Confidence 3467999999999999998765 2 236999999999999998875 67899999999999 99999999998543
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
- ..++++.|+|||||++++++.+.
T Consensus 161 ~--------------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 P--------------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred C--------------CCHHHHHhhccCCCEEEEEeCCC
Confidence 1 23578999999999999887543
No 55
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.63 E-value=6.2e-15 Score=104.07 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=80.5
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.+. .++++++..|+........++||+|++....+
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 358999999999999999886 446899999999999999987643 35788998987753213346899999866543
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
...+++++++++|||||.+++..
T Consensus 100 ----------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 100 ----------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ----------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 34689999999999999998764
No 56
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.62 E-value=1.7e-15 Score=116.31 Aligned_cols=112 Identities=19% Similarity=0.133 Sum_probs=84.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEccc-CCCC-CCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDV-RDMS-FFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~-~~~~-~~~~~~fD~Vi~~~~ 82 (210)
..+|||+|||+|..+..+++. +..+++++|+|+.+++.++++... .+++.++++|+ ..++ .+++++||+|++.+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 468999999999999999876 455899999999999999987743 36899999999 6543 256789999998654
Q ss_pred cchhcc-CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMC-GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~-~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..+... ..........+++++.++|||||.+++.+..
T Consensus 121 ~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 121 DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 322100 0001113578899999999999999887643
No 57
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.62 E-value=7.8e-15 Score=110.61 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=86.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.... .++.++.+|+.+.. .++||+|+++..+++.
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPYLPL 95 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCCCCC
Confidence 35799999999999999998876 8999999999999999887432 46788999986643 4589999999887655
Q ss_pred ccC--------------CCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCG--------------TNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~--------------~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
... ..+.....++++++.++|||||.++++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 211 1122236788999999999999998877553
No 58
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.61 E-value=6.5e-15 Score=110.14 Aligned_cols=108 Identities=21% Similarity=0.320 Sum_probs=84.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++... .+|+++|+++.+++.++++.+.. .+++++..|+.+. .++++||+|+++..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~--~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA--LPDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT--CCTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc--ccccceeEEEEccch
Confidence 456899999999999999998744 36999999999999999987533 4489999998764 457899999999886
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+.- .........+++++..++|||||.++++..
T Consensus 109 ~~~--~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 HAG--GDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp BTT--SHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcc--cccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 543 112334678999999999999999976553
No 59
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.59 E-value=1.4e-14 Score=120.21 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=84.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-----CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
..+|||+|||+|.++..+++. +..+|+++|.|+.|++.++++.+.. .++++...|+... ++.++||+|+++.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~--~~~~~fDlIlsNP 306 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--VEPFRFNAVLCNP 306 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--CCCCCEEEEEECc
Confidence 358999999999999999886 4568999999999999999887422 3678888887542 3456899999998
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+|.... .+.....+++++++++|||||.++++.
T Consensus 307 Pfh~~~~--~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 307 PFHQQHA--LTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CcccCcc--CCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 8875311 133456789999999999999998884
No 60
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.59 E-value=8e-15 Score=109.33 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=82.4
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-CCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||.|.+...+.+....+.+|+|++++.+..+.++ .+.++++|+.. ++.|++++||.||.+.+|.++
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 468999999999999999887556899999999999988875 47899999988 435999999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.++.++|+|+.|+ |... ++++.+
T Consensus 89 -------~~P~~vL~EmlRV---gr~~-IVsFPN 111 (193)
T PF07021_consen 89 -------RRPDEVLEEMLRV---GRRA-IVSFPN 111 (193)
T ss_pred -------hHHHHHHHHHHHh---cCeE-EEEecC
Confidence 9999999999887 3344 555543
No 61
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.58 E-value=7.4e-15 Score=112.13 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=84.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCC--CCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMS--FFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~~ 81 (210)
...+|||||||+|.++..+++. +..+++|+|+++.+++.|+++... ..|+.++++|+.+++ .++++++|.|+.+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3458999999999999999886 556899999999999999887643 368999999998643 14567999999876
Q ss_pred ccchhccC-CCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 82 TLDSLMCG-TNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 82 ~l~~~~~~-~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
...+..-. ...+-....+++++.++|||||.+++.+-..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 54332000 0001112578999999999999998876443
No 62
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.58 E-value=2e-14 Score=111.72 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=83.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++.... .++.+.++|+.+.+ ++||+|++..++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~fD~ii~~~~l 129 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC----GEFDIVVCMDVL 129 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----CCcCEEEEhhHH
Confidence 456899999999999999988765 8999999999999999987432 37899999987653 789999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
+|+ +..+...+++++.+++++++.+.+
T Consensus 130 ~~~-----~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 130 IHY-----PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HhC-----CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 887 556788999999999987655543
No 63
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=2.2e-14 Score=110.46 Aligned_cols=97 Identities=13% Similarity=0.118 Sum_probs=78.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+++.... .++++..+|+.+.. ...++||+|++..
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Ii~~~ 150 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL-EKHAPFDAIIVTA 150 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC-ccCCCccEEEEcc
Confidence 4468999999999999888875 2 348999999999999999887433 35899999998754 3467999999988
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.++++ .+++.+.|||||++++..
T Consensus 151 ~~~~~-------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 AASTI-------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred Ccchh-------------hHHHHHhcCcCcEEEEEE
Confidence 87766 246889999999997653
No 64
>PLN03075 nicotianamine synthase; Provisional
Probab=99.58 E-value=2.2e-14 Score=114.67 Aligned_cols=104 Identities=14% Similarity=0.226 Sum_probs=85.1
Q ss_pred CCCCEEEeCCCCchhHHHHHH--c-CCCcEEEEeCCHHHHHHHHHhhcC---C-CCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVK--D-GYEDIVNIDISSVAIDMMKMKYEE---I-PQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~--~-~~~~v~~vD~s~~~~~~a~~~~~~---~-~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
+..+|+|||||.|.++..+.. . +..+++++|+++++++.|++.... . ++++|.++|+.+.. -..+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~-~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT-ESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc-cccCCcCEEEE
Confidence 567899999998855544432 2 455899999999999999998842 2 57999999998864 33578999999
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. +++++ ..++..++++++.+.|+|||.+++.+
T Consensus 202 ~-ALi~~-----dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGM-----DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-ccccc-----ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 77776 45789999999999999999998876
No 65
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.57 E-value=3.1e-14 Score=116.07 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=87.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
.+..+|||||||+|.++..+++. +..+++++|. +.+++.++++.... ++++++.+|+.+.+ ++. +|+|+.+.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-~~~--~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-YPE--ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-CCC--CCEEEeEh
Confidence 34468999999999999999887 4558999997 78999998876432 57999999998755 543 69999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++|++ +.....++++++++.|||||++++.++.
T Consensus 224 ~lh~~-----~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 224 ILYSA-----NEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred hhhcC-----ChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 99877 4456688999999999999999999863
No 66
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.57 E-value=4.2e-14 Score=116.43 Aligned_cols=106 Identities=13% Similarity=0.145 Sum_probs=84.2
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.++|||+|||+|.++..+++. +..+++++|+|+.|++.++++.+.. ....+...|+... ..++||+|+++..+|+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~---~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD---IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc---cCCCccEEEECCCccC
Confidence 458999999999999999886 4458999999999999999877543 2456777776542 3578999999998885
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.. ........++++++.+.|||||.++++.-
T Consensus 274 g~--~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 274 GI--QTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred Cc--cccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 21 11235778999999999999999988763
No 67
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.57 E-value=3.7e-14 Score=109.66 Aligned_cols=97 Identities=12% Similarity=0.045 Sum_probs=78.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||||||+|.++..+++.. ..+|+++|+++.+++.++++.+. ..+++++++|+.... ...+.||+|++...
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-~~~~~fD~I~~~~~ 154 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-EENAPYDRIYVTAA 154 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CcCCCcCEEEECCC
Confidence 44689999999999999888762 24899999999999999998753 367999999998765 56789999998776
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+++ .+.+.+.|||||++++..
T Consensus 155 ~~~~-------------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 155 GPDI-------------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cccc-------------hHHHHHhhCCCcEEEEEE
Confidence 5544 346777899999987753
No 68
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.57 E-value=7.8e-14 Score=108.58 Aligned_cols=111 Identities=15% Similarity=0.214 Sum_probs=90.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC-CCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..++++ ...++++||+++.+.+.|+++.+.. .++++++.|+.++. .....+||+|+|+.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 3679999999999999999988 5469999999999999999988543 68999999999965 24455799999998
Q ss_pred ccchhccCC-C----------chHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGT-N----------APISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~-~----------~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+....... . ..-+.+..++...++|||||.+.++.
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 876542220 0 11257788999999999999998886
No 69
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.57 E-value=1.3e-14 Score=101.59 Aligned_cols=109 Identities=20% Similarity=0.309 Sum_probs=85.6
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC-CCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l~ 84 (210)
.+|||+|||+|.++..+++.+..+++++|+++.+++.++.+.... .+++++++|+.+.. .+++++||+|+++..+.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 479999999999999999887559999999999999999988532 57999999998853 36789999999987765
Q ss_pred hhc-cCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLM-CGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~-~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
... ...........+++++.++|||||.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 321 111223356789999999999999998875
No 70
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.55 E-value=1.7e-14 Score=106.78 Aligned_cols=83 Identities=22% Similarity=0.393 Sum_probs=73.8
Q ss_pred EEEeCCHHHHHHHHHhhcC-----CCCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhcc
Q 028385 34 VNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLK 108 (210)
Q Consensus 34 ~~vD~s~~~~~~a~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~Lk 108 (210)
+|+|+|++|++.|+++... ..+++|+++|+.++| +++++||+|++..+++++ .+..+++++++|+||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~-------~d~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNV-------VDRLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcC-------CCHHHHHHHHHHHcC
Confidence 4899999999999876531 247999999999999 999999999999999998 889999999999999
Q ss_pred CCcEEEEEEcCCchhh
Q 028385 109 PGGIYMLITYGDPKAR 124 (210)
Q Consensus 109 pgG~~~~~~~~~p~~~ 124 (210)
|||.+++.++..+...
T Consensus 73 pGG~l~i~d~~~~~~~ 88 (160)
T PLN02232 73 PGSRVSILDFNKSNQS 88 (160)
T ss_pred cCeEEEEEECCCCChH
Confidence 9999999999876543
No 71
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.55 E-value=1e-13 Score=107.28 Aligned_cols=106 Identities=10% Similarity=0.066 Sum_probs=91.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--------------CCCCcEEEEcccCCCCCCC--
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--------------EIPQLKYLQMDVRDMSFFE-- 70 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--------------~~~~v~~~~~d~~~~~~~~-- 70 (210)
...+||..|||.|.....|+++|+ +|+|+|+|+.+++.+.+... ...++++.++|+.+++ ..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~-~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP-KIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC-cccc
Confidence 346999999999999999999999 79999999999999866321 1247899999999876 21
Q ss_pred -CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 71 -DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 71 -~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.+.||+|+...+++++ +.+...++.+.+.++|+|||.++++++.
T Consensus 121 ~~~~fD~VyDra~~~Al-----pp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 121 NLPVFDIWYDRGAYIAL-----PNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ccCCcCeeeeehhHhcC-----CHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 3689999999999999 7889999999999999999999888763
No 72
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.55 E-value=3.8e-14 Score=111.13 Aligned_cols=106 Identities=21% Similarity=0.322 Sum_probs=88.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
....+|||+|||+|.++..+++.+. +++++|+++.+++.++++.... .++.+...|+.+.+...+++||+|++..+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 3456899999999999999988765 7999999999999998876432 3577888888775423457999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
|+ .+...+++++.++|+|||.+++....
T Consensus 126 ~~-------~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 126 HV-------PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred cc-------CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 98 78889999999999999999887654
No 73
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.55 E-value=4.2e-14 Score=110.17 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=89.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCC-CCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFE-DESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~-~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++.+. +++++|.++.+++.++++.... .++.+...|+.+.+ .. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA-EKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-cCCCCCccEEEehhHH
Confidence 356899999999999999888765 7999999999999999877433 25889999988766 33 4789999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+|+ .+...+++++.++|+|||.+++.....
T Consensus 123 ~~~-------~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 123 EHV-------PDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred HhC-------CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999 888999999999999999998776543
No 74
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.55 E-value=5e-14 Score=111.82 Aligned_cols=103 Identities=22% Similarity=0.252 Sum_probs=85.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHH--hhcC-CCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKM--KYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~--~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||||||+|..+..|+..+.+.|+|+|.++....+.+. ++-+ ...+.+....++++| . .+.||+|++.++|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp-~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP-N-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc-c-cCCcCEEEEeeeh
Confidence 346899999999999999999998899999999987766433 3322 233455556788888 5 7899999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.|. .++...|.+++..|++||.+++-+.
T Consensus 193 YHr-------r~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 193 YHR-------RSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred hcc-------CCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 999 9999999999999999999987554
No 75
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.55 E-value=6.3e-14 Score=113.25 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=78.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++.+..+|+++|+++.+++.|+++.... .++.+...+.. + ..+++||+|+++...
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~-~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--Q-PIEGKADVIVANILA- 235 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--c-ccCCCceEEEEecCH-
Confidence 3689999999999999988887778999999999999999887432 24555655532 2 346789999997653
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.....++.++.++|||||.+++..+.
T Consensus 236 ---------~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 ---------EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ---------HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 34467899999999999999887654
No 76
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.54 E-value=6.1e-14 Score=105.76 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=93.1
Q ss_pred CCCCCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-CCCCCCCcccEEEEC
Q 028385 2 ATPSTGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDK 80 (210)
Q Consensus 2 ~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~ 80 (210)
+.|.....=|||||||+|..+..+.+.|. ..+|+|+|+.|++.|.++.- .-.++.+|+-. +| |..++||.+|+.
T Consensus 45 alp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~---egdlil~DMG~Glp-frpGtFDg~ISI 119 (270)
T KOG1541|consen 45 ALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL---EGDLILCDMGEGLP-FRPGTFDGVISI 119 (270)
T ss_pred hCCCCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh---hcCeeeeecCCCCC-CCCCccceEEEe
Confidence 44555566799999999999998888785 89999999999999997431 13567777766 67 999999999998
Q ss_pred Cccchhcc----CCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhh
Q 028385 81 GTLDSLMC----GTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 124 (210)
Q Consensus 81 ~~l~~~~~----~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~ 124 (210)
..+.|+.- ...+...+..++..++.+|++|++.++.-|......
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQ 167 (270)
T ss_pred eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHH
Confidence 88876532 235666677889999999999999988877654433
No 77
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.54 E-value=1.1e-13 Score=105.10 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=78.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++. +..+++++|+++.+++.++++... ..+++++++|+.. + + .++||+|++....
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~-~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-E-L-PGKADAIFIGGSG 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-h-c-CcCCCEEEECCCc
Confidence 4568999999999999999876 345899999999999999987643 2578999988742 3 3 3589999987654
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++ ...+++++.++|||||++++...
T Consensus 108 ~~----------~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 108 GN----------LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred cC----------HHHHHHHHHHhcCCCeEEEEEEe
Confidence 33 35678899999999999977543
No 78
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.54 E-value=7.2e-14 Score=108.35 Aligned_cols=97 Identities=10% Similarity=0.002 Sum_probs=78.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++... .+|+++|+++.+++.|+++.... .+++++++|+.... ...++||+|++...
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~-~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW-EPLAPYDRIYVTAA 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-cccCCCCEEEEcCC
Confidence 446899999999999999988632 35999999999999999987543 68999999998754 34568999998766
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..++ .+.+.+.|||||++++..
T Consensus 156 ~~~~-------------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 GPKI-------------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccc-------------cHHHHHhcCcCcEEEEEE
Confidence 5544 356788999999997753
No 79
>PRK04266 fibrillarin; Provisional
Probab=99.54 E-value=1.6e-13 Score=106.83 Aligned_cols=101 Identities=15% Similarity=0.120 Sum_probs=77.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC---CCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM---SFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD~Vi~~~ 81 (210)
....+|||+|||+|.++..+++. +...|+++|+++.|++.+.++.+..+|+.++.+|+.+. ..+ .++||+|++..
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~ 149 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQDV 149 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEECC
Confidence 34568999999999999999886 33479999999999998877765557899999998752 112 35699998542
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.. ......++++++++|||||.+++.
T Consensus 150 ~~---------p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 150 AQ---------PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CC---------hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 21 123456789999999999999883
No 80
>PRK14967 putative methyltransferase; Provisional
Probab=99.53 E-value=8.4e-14 Score=108.57 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=83.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.++..+++.+..+++++|+++.+++.++++.... .++.++.+|+.+. +++++||+|+++..+...
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--VEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh--ccCCCeeEEEECCCCCCC
Confidence 4689999999999999998876568999999999999999876432 3578888888763 457799999998654321
Q ss_pred c--------------cCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 M--------------CGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~--------------~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. .+.........+++++.++|||||+++++.-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 0 1112233467889999999999999987643
No 81
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.52 E-value=3.7e-13 Score=103.80 Aligned_cols=103 Identities=20% Similarity=0.201 Sum_probs=77.1
Q ss_pred CCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAVI 78 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~Vi 78 (210)
..+|||+|||+|.++..+++.. ...|+++|+++ | ...++++++++|+.+.+ .+.+++||+|+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~ 122 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVM 122 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEe
Confidence 3579999999999999998862 34899999998 1 12367999999999852 15678999999
Q ss_pred ECCccchhccCCCchH------HHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 79 DKGTLDSLMCGTNAPI------SASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~------~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+..+.++. +..... ....+++++.++|||||.|++..+...
T Consensus 123 S~~~~~~~--g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 123 SDMAPNMS--GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred cCCCCccC--CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 98765542 111111 135789999999999999998776543
No 82
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.52 E-value=1.5e-13 Score=107.44 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=78.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++.+. +++++|+|+.|++.|+++.... .++.+..+|+ + ..+++||+|++..++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~-~~~~~fD~v~~~~~l 137 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---E-SLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---h-hccCCcCEEEEcchh
Confidence 446899999999999999998866 6999999999999999987432 4688999884 3 346789999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGI 112 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~ 112 (210)
+|+ +.+....+++++.+.+++++.
T Consensus 138 ~~~-----~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 138 IHY-----PQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hcC-----CHHHHHHHHHHHHhhcCCeEE
Confidence 887 456788999999997754443
No 83
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.52 E-value=1.6e-13 Score=111.63 Aligned_cols=96 Identities=15% Similarity=0.179 Sum_probs=76.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------CCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------PQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
...+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++.+.. .++.|...|+.++ +++||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEEE
Confidence 346899999999999999999875 8999999999999999987432 3578888887543 478999999
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
..+++|+ +......+++.+.++ .+||.+
T Consensus 219 ~~vL~H~-----p~~~~~~ll~~l~~l-~~g~li 246 (315)
T PLN02585 219 LDVLIHY-----PQDKADGMIAHLASL-AEKRLI 246 (315)
T ss_pred cCEEEec-----CHHHHHHHHHHHHhh-cCCEEE
Confidence 9999887 445566777777764 555554
No 84
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.52 E-value=3.3e-13 Score=91.17 Aligned_cols=100 Identities=24% Similarity=0.372 Sum_probs=84.1
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCccch-h
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS-L 86 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~-~ 86 (210)
+|+|+|||+|..+..+++....+++++|.++.+++.+++... ...++++...|+.+......++||+|++..++++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 589999999999999988555689999999999999984332 2367899999998865125678999999999987 5
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.....+++.+.+.|+|||.+++.
T Consensus 81 -------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 -------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 78999999999999999999765
No 85
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.51 E-value=3.6e-13 Score=108.50 Aligned_cols=108 Identities=14% Similarity=0.205 Sum_probs=82.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
+..+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++.... .+++++++|+.+. +++++||+|+++..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECCC
Confidence 3468999999999999999986 3458999999999999999987532 4689999998652 45568999999743
Q ss_pred cch------h------------ccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 83 LDS------L------------MCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 83 l~~------~------------~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
... + ..+.++......+++++.++|+|||++++-
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 211 0 112233455688899999999999998653
No 86
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.51 E-value=1.6e-13 Score=113.52 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=85.8
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCC-CCCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDM-SFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l~ 84 (210)
..+||||||+|..+..+++. +...++|+|+++.+++.+.++... ..|+.++++|+..+ ..++++++|.|++++..-
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdP 203 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPVP 203 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCCC
Confidence 47999999999999999986 556899999999999999888743 47899999999764 127889999999865543
Q ss_pred hhccCCCc-hHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMCGTNA-PISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~~~~~-~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
|. ..+. +-....+++++.|+|+|||.+.+.+-..
T Consensus 204 W~--KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 204 WD--KKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred cc--ccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 32 0000 0123688999999999999998877443
No 87
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.50 E-value=1e-13 Score=105.77 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=75.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-CCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.++..+++.....++|+|+|+.+++.++++ +++++++|+.+ ++.+++++||+|+++.+++|+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 358999999999999988876555789999999999988653 47888999876 322677899999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKP 109 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~Lkp 109 (210)
.+...+++++.|++++
T Consensus 89 -------~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 89 -------RNPEEILDEMLRVGRH 104 (194)
T ss_pred -------cCHHHHHHHHHHhCCe
Confidence 8899999999887653
No 88
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.50 E-value=2.9e-13 Score=104.75 Aligned_cols=99 Identities=10% Similarity=-0.012 Sum_probs=78.7
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
.....+|||+|||+|.++..+++... +++++|+++.+++.++++.+. ..++++..+|..+.. ...++||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW-PAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC-CcCCCcCEEEEccC
Confidence 34557899999999999988877654 899999999999999988753 357899999986643 23578999999876
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++++ .+++.+.|+|||.+++...
T Consensus 154 ~~~~-------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEI-------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhh-------------hHHHHHhcCCCcEEEEEEc
Confidence 6554 3467889999999977653
No 89
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.49 E-value=9.6e-14 Score=106.10 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=90.1
Q ss_pred CEEEeCCCCchhHHHHHHcC---CCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC---CCCCCcccEEEECCc
Q 028385 10 DTCRRAAPSIVMSEDMVKDG---YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS---FFEDESFDAVIDKGT 82 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~~ 82 (210)
+|||+|||.|.....+++.. .-.++++|.|+.+++..+++..-. .++...+.|+.... ....+++|+|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 79999999999999998862 247999999999999999876432 45555566665521 266889999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
|.++ +++....++++++++|||||.+++.+|+.-+
T Consensus 154 LSAi-----~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 154 LSAI-----HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred Eecc-----ChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 9998 7789999999999999999999999998754
No 90
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.49 E-value=1.9e-13 Score=111.18 Aligned_cols=103 Identities=19% Similarity=0.219 Sum_probs=79.3
Q ss_pred CCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC-CCC--cEEEEcccCC-CCCCCCC----cccEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE-IPQ--LKYLQMDVRD-MSFFEDE----SFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-~~~--v~~~~~d~~~-~~~~~~~----~fD~V 77 (210)
..+|||+|||+|..+..+++.. ..+|+++|+|++|++.++++... .++ +.++++|+.+ .+ ++.. ...++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEEE
Confidence 3579999999999999998873 34899999999999999988643 244 5678999987 33 3332 23344
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
++..+++++ ++.+...++++++++|+|||.+++.
T Consensus 143 ~~gs~~~~~-----~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNF-----TPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCC-----CHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 444566666 6678899999999999999999764
No 91
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.48 E-value=6.9e-13 Score=107.91 Aligned_cols=106 Identities=13% Similarity=0.203 Sum_probs=82.6
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.+|||+|||+|.++..++.. +..+++++|+|+.+++.|+++.+.. .+++++++|+.+. +++++||+|+++....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA--LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh--CCCCCccEEEECCCCC
Confidence 57999999999999999876 4558999999999999999987532 4699999998652 3456899999974321
Q ss_pred h------------------hccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 85 S------------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 85 ~------------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
. +..+.++......+++++.++|+|||.+++-
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0 1122234456788999999999999999763
No 92
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.2e-13 Score=108.77 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=78.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CC-cEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQ-LKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~-v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
+..+|||+|||+|.++...++.|..+++|+|++|.+++.++++...+ +. ++....+....+ ..++||+|+++-..
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~--~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP--ENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc--ccCcccEEEehhhH
Confidence 45689999999999999999999989999999999999999987432 21 223333333222 34699999997532
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
....++...+.+.|||||++++.-.-
T Consensus 240 ----------~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 240 ----------EVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred ----------HHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 44678999999999999999887543
No 93
>PRK14968 putative methyltransferase; Provisional
Probab=99.47 E-value=9.2e-13 Score=99.71 Aligned_cols=109 Identities=21% Similarity=0.325 Sum_probs=83.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CC--cEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQ--LKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++.+ .+++++|+|+.+++.++++.... .+ +.++.+|+.+. +.+++||+|+++..
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~p 99 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFNPP 99 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEECCC
Confidence 34579999999999999999885 48999999999999998876422 22 88899988763 45668999998766
Q ss_pred cchh--------------ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSL--------------MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~--------------~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+... ..+..+......+++++.++|||||.+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 5321 01122344567899999999999999877653
No 94
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.47 E-value=3.9e-13 Score=106.54 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=73.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+..+++++|+|+.+++.|+++.... ++. +...+. ..+.+||+|+++...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~-~~~----~~~~~~-~~~~~fD~Vvani~~--- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN-GVE----LNVYLP-QGDLKADVIVANILA--- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc-CCC----ceEEEc-cCCCCcCEEEEcCcH---
Confidence 45689999999999999888877767999999999999999887432 120 101112 122379999987542
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.....++.++.++|||||.+++..+.
T Consensus 190 -------~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 190 -------NPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred -------HHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 34567899999999999999987654
No 95
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.47 E-value=7.6e-13 Score=108.94 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=87.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++...+..+. .++|+|+++.|++.++++.+. ..++.+.++|+.+++ +++++||+|+++..+.
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~-~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP-LSSESVDAIATDPPYG 259 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-cccCCCCEEEECCCCc
Confidence 345799999999999988777655 899999999999999988753 245889999999998 7788999999975543
Q ss_pred hhcc--CCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMC--GTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~--~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.-.. +........++++++.++|||||++++.....
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 2100 00112346899999999999999998776443
No 96
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.47 E-value=4.6e-13 Score=109.57 Aligned_cols=110 Identities=24% Similarity=0.212 Sum_probs=83.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--------C----CCcEEEEcccCCCC---CCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------I----PQLKYLQMDVRDMS---FFED 71 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~----~~v~~~~~d~~~~~---~~~~ 71 (210)
...+|||+|||.|.-+..+...+...++|+|++...++.|+++++. . -...|+.+|..... .+.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 5578999999999888888888788999999999999999999821 1 13467788776531 1333
Q ss_pred --CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 72 --ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 72 --~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..||+|-|.+++|+. ..+......+++++.+.|||||+|+.++..
T Consensus 142 ~~~~FDvVScQFalHY~---Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYA---FESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGG---GSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHh---cCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 599999999999986 236678889999999999999999877643
No 97
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.46 E-value=3e-13 Score=104.66 Aligned_cols=105 Identities=22% Similarity=0.225 Sum_probs=84.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--------------CCCcEEEEcccCCCCCCCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------------IPQLKYLQMDVRDMSFFEDE 72 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------------~~~v~~~~~d~~~~~~~~~~ 72 (210)
...+||..|||.|.....|+++|. +|+|+|+|+.+++.+.+.... ..+|++.++|+.+++.-..+
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 445899999999999999999998 899999999999998543311 13678999999987622235
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+||+|+...+|+++ ++....+..+.+.++|||||.+++++
T Consensus 116 ~fD~iyDr~~l~Al-----pp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 116 KFDLIYDRTFLCAL-----PPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp SEEEEEECSSTTTS------GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred CceEEEEecccccC-----CHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 79999999999998 77899999999999999999954444
No 98
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.46 E-value=8.5e-13 Score=101.07 Aligned_cols=100 Identities=12% Similarity=0.162 Sum_probs=78.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++. +..+|+++|+++.+++.++++.+.. .++.++.+|+.+......+.||.|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 3458999999999999988764 3358999999999999999886432 5789999998763212346899999854
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
. . .+...+++++.++|||||++++.
T Consensus 120 ~---~-------~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 120 G---S-------EKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred C---c-------ccHHHHHHHHHHHcCCCcEEEEE
Confidence 2 2 45678899999999999999763
No 99
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.46 E-value=8.3e-13 Score=104.50 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=83.4
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++. +..+++++|+++.+++.++++... .++++++++|+.+ + +++++||+|+++..+.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~-~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-P-LPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-c-CcCCceeEEEECCCCC
Confidence 358999999999999999886 445899999999999999988743 3578999999876 3 5678999999976543
Q ss_pred hhc-------------------cCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLM-------------------CGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~-------------------~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
... .+.........+++++.++|+|||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 210 011122345688999999999999997654
No 100
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.45 E-value=1.2e-12 Score=109.06 Aligned_cols=120 Identities=12% Similarity=0.115 Sum_probs=87.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCC-CCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFF-EDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~-~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++. +..+++++|+|+.|++.|+++.+.. .+++++++|+.+.. + ..++||+|+++....
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~-l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD-MPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc-cccCCCccEEEECCCCC
Confidence 358999999999999988865 5568999999999999999987543 47899999986643 3 245899999986541
Q ss_pred h------------------hccCCCchHHHHHHHHHHHHhccCCcEEEEEE-cCCchhhHhhh
Q 028385 85 S------------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT-YGDPKARMIHL 128 (210)
Q Consensus 85 ~------------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~-~~~p~~~~~~~ 128 (210)
. +..+.++..-..++++++.+.|+|||.+++.. +.++......+
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll 393 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVL 393 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHH
Confidence 1 11223455567789999999999999986532 23344443343
No 101
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.45 E-value=1.7e-12 Score=108.52 Aligned_cols=184 Identities=31% Similarity=0.423 Sum_probs=129.3
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh-cCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY-EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
.++|.+|||+..++..+.+.|+..++.+|+|+..++.+..+. ...+...+...|+..+. |++++||+|+.++++|++.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~-fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV-FEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc-CCCcceeEEEecCcccccc
Confidence 489999999999999999999999999999999999999887 44578999999999999 9999999999999999998
Q ss_pred cCCCchH---HHHHHHHHHHHhccCCcEEEEEEcC--CchhhHhhhcccccceEEEEEEecCCCCCCCCCCCCCCccccC
Q 028385 88 CGTNAPI---SASQMLGEVSRLLKPGGIYMLITYG--DPKARMIHLKWKVYNWKIELYIIARPGFEKPGGCSSSMKSYLE 162 (210)
Q Consensus 88 ~~~~~~~---~~~~~l~~i~r~LkpgG~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 162 (210)
++....- .....+.+++|+|++||+++.+++. .|..+...+......|. +......+.. ..-+.
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r~~e~~~~~p~G~----------~~~~~~s~~~-~l~~v 197 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGRKPEWLFGSPGGS----------KQMNVSSSGE-RLAIV 197 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCCCCeeeeecCccch----------hhhhhhccCc-ceEEE
Confidence 7765554 6778899999999999999999985 44433222111111111 1111111110 11111
Q ss_pred CcccCCCCCCccccccCCCCceEEEEEEecCCcccCCCCccc
Q 028385 163 PVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDENHIPSYT 204 (210)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~K~~~~~~~~~~~~~ 204 (210)
-...+.....+......+...++++.++......+.+.+...
T Consensus 198 ~l~~gq~~~~~~~~~~~~~~s~~~~~l~~~g~~~~~q~~~ls 239 (482)
T KOG2352|consen 198 ALHRGQQYSTPQEDEVQDPLSPFRRQLDPKGEPTQQQREILS 239 (482)
T ss_pred EeccCccccchHHhhhccccccceeecccccCChhhhhcccc
Confidence 122222233333444566777888888887766554444433
No 102
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.45 E-value=1e-12 Score=106.00 Aligned_cols=107 Identities=14% Similarity=0.223 Sum_probs=83.1
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.+|||+|||+|.++..++.. +..+++++|+|+.+++.|+++.... .+++++++|+.+ + +++++||+|+++....
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~-~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-P-LAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-c-CcCCCccEEEECCCCC
Confidence 58999999999999999886 3458999999999999999987432 349999999876 3 4455899999973221
Q ss_pred -------------h-----hccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 -------------S-----LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 -------------~-----~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
| +..+.++......+++++.++|+|||++++-.
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 11233445678899999999999999986543
No 103
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.44 E-value=2.4e-13 Score=104.00 Aligned_cols=105 Identities=14% Similarity=0.226 Sum_probs=80.3
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-C--CcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-P--QLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~--~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
..++..++|+|||+|.-++-++.+ +.+|+++|+|+.|++.|++..+.. . ...+...++.++. -.+++.|+|++-.
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-GGEESVDLITAAQ 108 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-CCCcceeeehhhh
Confidence 445557899999999777777777 459999999999999998876432 1 2233334444443 3489999999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCc-EEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGG-IYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG-~~~~~~~~ 119 (210)
++|++ +.+++.++++|+||+.| .+.+-.|+
T Consensus 109 a~HWF--------dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 109 AVHWF--------DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hHHhh--------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 99998 78999999999997766 66666665
No 104
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=2.2e-12 Score=103.59 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=84.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-C-CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-E-IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|.++..++.. +..+++++|+|+.+++.++++.. . ..++.++.+|+.+. +.+++||+|+++..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~--~~~~~fD~Iv~npP 184 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP--LPGGRFDLIVSNPP 184 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc--CCCCceeEEEECCC
Confidence 34568999999999999999886 34589999999999999999875 2 25789999998653 34678999999754
Q ss_pred cch-------------------hccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 83 LDS-------------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 83 l~~-------------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+.. +..+..+......+++++.++|||||.+++.
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 321 1112334456788999999999999999764
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.44 E-value=1.2e-12 Score=100.00 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=77.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCC-CCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRD-MSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.+. ..+++++.+|+.+ ++ .....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~-~~~~~~d~v~~~~- 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA-QLAPAPDRVCIEG- 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh-hCCCCCCEEEEEC-
Confidence 4468999999999999988865 345899999999999999988743 2578999999865 22 2223457665421
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. .....+++++.++|+|||.+++....
T Consensus 118 ---~-------~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 ---G-------RPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred ---C-------cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 1 34678999999999999999887754
No 106
>PHA03411 putative methyltransferase; Provisional
Probab=99.44 E-value=1.6e-12 Score=102.64 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=84.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.++..++.. +..+++++|+++.|++.++++. +++.++++|+.+.. .+++||+|+++..+++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---PEAEWITSDVFEFE--SNEKFDVVISNPPFGKI 139 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECchhhhc--ccCCCcEEEEcCCcccc
Confidence 468999999999999888775 3458999999999999999875 57899999998765 35689999999988875
Q ss_pred ccCCC-----------chHH--HHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 87 MCGTN-----------APIS--ASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 87 ~~~~~-----------~~~~--~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
...+. ..+. ..+.+....++|+|+|.++++--+.|.
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~ 188 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY 188 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc
Confidence 22211 1111 367888889999999988776333343
No 107
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=3.8e-12 Score=101.21 Aligned_cols=108 Identities=14% Similarity=0.193 Sum_probs=83.4
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
++|||+|||.|.++..+++. +..+++.+|+|..+++.++++...+ .+..+...|...- ..+ +||.|+++..+|.
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~--v~~-kfd~IisNPPfh~ 236 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP--VEG-KFDLIISNPPFHA 236 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc--ccc-cccEEEeCCCccC
Confidence 49999999999999999987 5678999999999999999998543 3435666665442 233 9999999999984
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
= -.-...-.++++.+..+.|++||.+.++--+.+
T Consensus 237 G--~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l 270 (300)
T COG2813 237 G--KAVVHSLAQEIIAAAARHLKPGGELWIVANRHL 270 (300)
T ss_pred C--cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC
Confidence 2 001112345899999999999999988875443
No 108
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.42 E-value=9.8e-13 Score=105.80 Aligned_cols=98 Identities=20% Similarity=0.235 Sum_probs=74.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|||+|||+|.++...++.|..+|+++|+++.+++.|+++.+.+ .. .+......+ ...++||+|+++-..
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~---~~~~~~dlvvANI~~-- 235 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSED---LVEGKFDLVVANILA-- 235 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSC---TCCS-EEEEEEES-H--
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecc---cccccCCEEEECCCH--
Confidence 3589999999999999999999989999999999999999988432 22 232222222 345899999997553
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..+..++..+.++|+|||++++.-+-
T Consensus 236 --------~vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 236 --------DVLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp --------HHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred --------HHHHHHHHHHHHhhCCCCEEEEcccc
Confidence 45678899999999999999886543
No 109
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.42 E-value=4e-12 Score=100.69 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=81.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC-CCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-SFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++.+.. ++++.++|+.+. +....++||+|+++..+..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 357999999999999998875 4458999999999999999987543 358899998763 2111357999999865421
Q ss_pred -------------------hccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 86 -------------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 86 -------------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+..+.+...-...++..+.++|||||++++..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 11222334456789999999999999998664
No 110
>PTZ00146 fibrillarin; Provisional
Probab=99.41 E-value=3.5e-12 Score=101.81 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=77.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC---CCCCCCcccEEEEC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM---SFFEDESFDAVIDK 80 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD~Vi~~ 80 (210)
....+|||+|||+|.++..+++.- ...|+++|+++.|.+.+.+..+..+|+.++..|+... . ...++||+|++.
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~-~~~~~vDvV~~D 209 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYR-MLVPMVDVIFAD 209 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhh-cccCCCCEEEEe
Confidence 344589999999999999999872 3479999999987655555544447899999998652 2 234589999986
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.. .. .+...++.++.++|||||.|++.
T Consensus 210 va--~p-------dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 210 VA--QP-------DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CC--Cc-------chHHHHHHHHHHhccCCCEEEEE
Confidence 53 12 45667778999999999999883
No 111
>PRK00811 spermidine synthase; Provisional
Probab=99.39 E-value=2.3e-12 Score=103.79 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-------CCCCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-------EIPQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-------~~~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
..+||+||||+|..+..++++ +..+|+++|+++.+++.|++... +.++++++.+|+...-...+++||+|++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 458999999999999999987 55689999999999999998763 2368999999988742134678999998
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
...-... ....--..++++.+++.|+|||++++.
T Consensus 157 D~~dp~~---~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 157 DSTDPVG---PAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CCCCCCC---chhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 6432211 000112367789999999999998764
No 112
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.39 E-value=5.1e-12 Score=94.36 Aligned_cols=99 Identities=10% Similarity=0.110 Sum_probs=77.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+ .+++++|+++.+++.++++....++++++.+|+.+++ +++..||.|+++..++..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~~~ 90 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYNIS 90 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCcccH
Confidence 34589999999999999999984 4899999999999999998865578999999999988 777789999998776532
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
.+...+++++.. +.++|.+++
T Consensus 91 ------~~~i~~~l~~~~--~~~~~~l~~ 111 (169)
T smart00650 91 ------TPILFKLLEEPP--AFRDAVLMV 111 (169)
T ss_pred ------HHHHHHHHhcCC--CcceEEEEE
Confidence 233444443322 346777755
No 113
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.38 E-value=4.1e-12 Score=109.86 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=82.5
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+|||+|||+|.++..++.. +..+++++|+|+.+++.|+++.... .+++++++|+.+. ++.++||+|+++..+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--IEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh--CcCCCccEEEECCCC
Confidence 357999999999999988865 5568999999999999999987432 4689999997642 345689999996533
Q ss_pred ch-------------------hccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 84 DS-------------------LMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 84 ~~-------------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
.. +..+.++......+++++.++|+|||.+++
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 21 112334556678899999999999999875
No 114
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.38 E-value=5.2e-12 Score=95.93 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=73.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAV 77 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~V 77 (210)
...+|||+|||+|.++..+++. +..+++++|+|+.+ ..+++.++++|+.+.+ .+++++||+|
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence 3458999999999999988875 33479999999864 1257889999987632 1356789999
Q ss_pred EECCccchhc-cCC---CchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 78 IDKGTLDSLM-CGT---NAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 78 i~~~~l~~~~-~~~---~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++....+... ... .......+++.++.++|+|||++++..+.
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 9865422100 000 01123578999999999999999886544
No 115
>PHA03412 putative methyltransferase; Provisional
Probab=99.37 E-value=7.3e-12 Score=96.91 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=77.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc----CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD----GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++. +++.+..+|+...+ + +++||+||++..+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---~~~~~~~~D~~~~~-~-~~~FDlIIsNPPY 124 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---PEATWINADALTTE-F-DTLFDMAISNPPF 124 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---cCCEEEEcchhccc-c-cCCccEEEECCCC
Confidence 469999999999999988864 2348999999999999999876 56899999998765 4 5689999999887
Q ss_pred chhccCC-----CchHHHHHHHHHHHHhccCCcE
Q 028385 84 DSLMCGT-----NAPISASQMLGEVSRLLKPGGI 112 (210)
Q Consensus 84 ~~~~~~~-----~~~~~~~~~l~~i~r~LkpgG~ 112 (210)
.-..... .+..-...++..+.+++++|+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 6443211 1223466788999997676664
No 116
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.37 E-value=6e-12 Score=102.68 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=76.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++... ..|+++|+++.+++.|+++.+. ..++.++++|+.... ...++||+|++...
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~-~~~~~fD~Ii~~~g 158 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV-PEFAPYDVIFVTVG 158 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc-cccCCccEEEECCc
Confidence 446899999999999999988632 3699999999999999987743 367899999987765 44568999998765
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++++ ...+.+.|+|||.+++..
T Consensus 159 ~~~i-------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VDEV-------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hHHh-------------HHHHHHhcCCCCEEEEEe
Confidence 5443 334678999999987743
No 117
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.37 E-value=6.2e-12 Score=94.85 Aligned_cols=139 Identities=17% Similarity=0.267 Sum_probs=77.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
...|.|+|||.+.++..+. .+. .|...|.-. .+-.+..+|+.+.| +++++.|++|....|=.
T Consensus 73 ~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva-------------~n~~Vtacdia~vP-L~~~svDv~VfcLSLMG-- 134 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA-------------PNPRVTACDIANVP-LEDESVDVAVFCLSLMG-- 134 (219)
T ss_dssp TS-EEEES-TT-HHHHH---S----EEEEESS--------------SSTTEEES-TTS-S---TT-EEEEEEES---S--
T ss_pred CEEEEECCCchHHHHHhcc-cCc-eEEEeeccC-------------CCCCEEEecCccCc-CCCCceeEEEEEhhhhC--
Confidence 4679999999999996653 233 699999754 23357889999999 99999999998666532
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcc--cccceEEEEEEecCCCCCCCCCCCCCCccccCCcc
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKW--KVYNWKIELYIIARPGFEKPGGCSSSMKSYLEPVP 165 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 165 (210)
.+....+.|..|+|||||.+.|.+..+.-.....+.. ...++... ....
T Consensus 135 ------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~--~~d~--------------------- 185 (219)
T PF05148_consen 135 ------TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLK--SKDE--------------------- 185 (219)
T ss_dssp ------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEE--EEE----------------------
T ss_pred ------CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEE--eccc---------------------
Confidence 5899999999999999999999986542222222211 12333332 1111
Q ss_pred cCCCCCCccccccCCCCceEEEEEEecCCcccCCCCcccccc
Q 028385 166 ITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDENHIPSYTLKG 207 (210)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~y~~~~~K~~~~~~~~~~~~~~~~ 207 (210)
...+-+++.++|.........+..+||+
T Consensus 186 --------------~n~~F~~f~F~K~~~~~~~~~~~~~LkP 213 (219)
T PF05148_consen 186 --------------SNKHFVLFEFKKIRKKEPKKKPGLKLKP 213 (219)
T ss_dssp ---------------STTEEEEEEEE-SSS-TT---GG----
T ss_pred --------------CCCeEEEEEEEEcCcccccccCCccccc
Confidence 1123377888888877667777778876
No 118
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.36 E-value=3.6e-11 Score=87.14 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=91.4
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVID 79 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~ 79 (210)
+..+-|||+|.|||.++..++.++. ..++.+++|+++.....+++ +.++++.+|+.++. .+.+..||.|+|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p~~~ii~gda~~l~~~l~e~~gq~~D~viS 123 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---PGVNIINGDAFDLRTTLGEHKGQFFDSVIS 123 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---CCccccccchhhHHHHHhhcCCCeeeeEEe
Confidence 3446799999999999999999854 47999999999999999888 66789999998864 367888999999
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.-.+-.+ +.....+.++.+...|.+||.++..+|+
T Consensus 124 ~lPll~~-----P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 124 GLPLLNF-----PMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ccccccC-----cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 8776655 6678889999999999999999999998
No 119
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=8.7e-12 Score=94.49 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=81.1
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
.....+|||||||+|..+.-+++... +|+.+|..+...+.|+++.+.. .|+.+.++|...-- -+..+||.|+....
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~-~~~aPyD~I~Vtaa 147 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW-PEEAPYDRIIVTAA 147 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC-CCCCCcCEEEEeec
Confidence 34457899999999999999999865 8999999999999999998654 67999999998853 24589999999877
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
...+ -+.+.+.||+||++++..
T Consensus 148 a~~v-------------P~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 148 APEV-------------PEALLDQLKPGGRLVIPV 169 (209)
T ss_pred cCCC-------------CHHHHHhcccCCEEEEEE
Confidence 6655 344677889999998765
No 120
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.34 E-value=1.2e-11 Score=97.55 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=83.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+..+|+|||+|+|.++..+++. +..+++..|. |.+++.+++ .++++++.+|+. -+ +|. +|+++.+++||.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f-~~-~P~--~D~~~l~~vLh~ 170 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFF-DP-LPV--ADVYLLRHVLHD 170 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TT-TC-CSS--ESEEEEESSGGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHH-hh-hcc--ccceeeehhhhh
Confidence 4457999999999999999876 6668999997 888888888 489999999998 44 666 999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCC--cEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPG--GIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~Lkpg--G~~~~~~~~ 119 (210)
+ +.++..++|+++++.|+|| |++++.+..
T Consensus 171 ~-----~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 171 W-----SDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp S------HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred c-----chHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 8 7789999999999999999 999998864
No 121
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.34 E-value=4e-12 Score=101.01 Aligned_cols=105 Identities=23% Similarity=0.296 Sum_probs=85.9
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----C----CcEEEEcccCCCC-----CCCCCcccE
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----P----QLKYLQMDVRDMS-----FFEDESFDA 76 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~----~v~~~~~d~~~~~-----~~~~~~fD~ 76 (210)
.++++|||-|.-+..+-+.+..+++|+||++..+++|++++.+. . .+.|+++|...-. .+.+.+||+
T Consensus 120 ~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDi 199 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDI 199 (389)
T ss_pred ccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcce
Confidence 58999999999988888888889999999999999999998543 1 3678889876521 145556999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|-|.+++|+. ..+.+....++.++.+.|||||+|+.+.
T Consensus 200 vScQF~~HYa---Fetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 200 VSCQFAFHYA---FETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred eeeeeeEeee---eccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 9999999864 2356788999999999999999996543
No 122
>PRK04457 spermidine synthase; Provisional
Probab=99.33 E-value=1.1e-11 Score=98.73 Aligned_cols=109 Identities=11% Similarity=0.209 Sum_probs=81.6
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCC-CCCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDM-SFFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~ 82 (210)
..+|||||||+|.++..+++. +..+++++|+++.+++.|++.... .++++++.+|+.+. . -..++||+|++..
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~-~~~~~yD~I~~D~- 144 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA-VHRHSTDVILVDG- 144 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH-hCCCCCCEEEEeC-
Confidence 457999999999999988876 556899999999999999998742 26899999998763 2 2246899999753
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++.. +....-...++++++.+.|+|||++++..+..
T Consensus 145 ~~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 145 FDGE--GIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCC--CCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 1111 00011123789999999999999998754443
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=2.5e-11 Score=103.25 Aligned_cols=114 Identities=17% Similarity=0.271 Sum_probs=84.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCC-CCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF-FEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~-~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|..+..+++... .+|+++|+++.+++.++++.+.. .+++++++|+.+.+. +..++||.|++...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 3446899999999999999988632 58999999999999999988543 347899999987541 24578999997554
Q ss_pred cchhcc-CC-------Cch-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMC-GT-------NAP-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~-~~-------~~~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...... .. ... ....+++.++.++|||||.++..+++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 221100 00 011 22457899999999999999887764
No 124
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=1.9e-11 Score=103.84 Aligned_cols=113 Identities=16% Similarity=0.226 Sum_probs=85.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|..+..+++. +..+|+++|+++.+++.++++.+.. .++.+.++|+.+++.+.+++||.|++...
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence 4458999999999999988875 3458999999999999999988543 56889999998764244678999998544
Q ss_pred cchhccCCC-c-------h-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTN-A-------P-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~-~-------~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
......-.. + . ....+++.++.+.|||||.++..+++
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 322211000 1 0 13467899999999999999888876
No 125
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.32 E-value=2.5e-11 Score=90.16 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=81.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCC-cccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDE-SFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~-~fD~Vi~~~~ 82 (210)
...+++|||||||..+..++.. +..+++++|.++++++..+++..+ .+|+.++.+++-..- ++- +||.|+..+.
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L--~~~~~~daiFIGGg 111 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL--PDLPSPDAIFIGGG 111 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh--cCCCCCCEEEECCC
Confidence 3457999999999999999854 556899999999999999988754 489999999987742 222 7999997665
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.+.+.+++.+...|||||++++.-..
T Consensus 112 -----------~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 112 -----------GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred -----------CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 45688999999999999999775433
No 126
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.31 E-value=2.6e-11 Score=96.86 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=83.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|..+..+++. ....|+++|+++.+++.++++.+.. .++.+...|+..++ ...+.||.|++...
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-AAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-hhccCCCEEEEcCC
Confidence 4468999999999999988875 2347999999999999999988543 57899999988766 45567999997543
Q ss_pred cchhcc-CC-------Cch-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMC-GT-------NAP-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~-~~-------~~~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...... .. ... ....++|+++.+.|||||+++..+++
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 221100 00 011 13456999999999999999887766
No 127
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.30 E-value=6.6e-11 Score=106.26 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=84.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C--CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I--PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+|||+|||+|.++..++..+..+|+++|+|+.+++.|+++.+. . .+++++++|+.+...-..++||+|++....
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 468999999999999999998776899999999999999998843 2 368999999876320125689999986542
Q ss_pred chhcc----CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMC----GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~----~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..-.- ......+...++..+.++|+|||.+++.+..
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 11000 0012356788899999999999999776654
No 128
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.30 E-value=1.6e-11 Score=98.35 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=78.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..+||+||||+|.++..+++.+ ..+++++|+++.+++.+++.... .++++++.+|+...-....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 3499999999999999988874 56899999999999999987632 2578888888765310235789999986
Q ss_pred CccchhccCCCchHH--HHHHHHHHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPIS--ASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~--~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.....- +... ..++++.+.++|+|||.+++.
T Consensus 153 ~~~~~~-----~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 153 STDPVG-----PAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCCC-----cccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 542111 1112 468889999999999999775
No 129
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.30 E-value=2.4e-11 Score=103.93 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=82.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|..+..+++. +..+|+++|+|+.+++.++++.+.. .+++++++|+.+.+ ++++||+|++...
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcCC
Confidence 3468999999999999888764 2348999999999999999888533 57899999998764 4578999996422
Q ss_pred cchhc-cCC-------CchH-------HHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 83 LDSLM-CGT-------NAPI-------SASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 83 l~~~~-~~~-------~~~~-------~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
..... +.. .... ...+++.++.++|||||+++..+++-
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 11000 000 0111 24578999999999999999988763
No 130
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.1e-11 Score=96.98 Aligned_cols=116 Identities=20% Similarity=0.291 Sum_probs=85.0
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccch-
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS- 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~- 85 (210)
+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++.... .++.++.+|+..- . .++||+|+++..+=.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~--~-~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP--L-RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc--c-CCceeEEEeCCCCCCC
Confidence 7999999999999999987 4458999999999999999988543 4556666665442 2 338999999855311
Q ss_pred -----------------hccCCCchHHHHHHHHHHHHhccCCcEEEEEE-cCCchhhHhhh
Q 028385 86 -----------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT-YGDPKARMIHL 128 (210)
Q Consensus 86 -----------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~-~~~p~~~~~~~ 128 (210)
+..+.++.....+++.++.+.|+|||.+++-. +++.......+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~ 250 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALF 250 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHH
Confidence 11222456678899999999999999886543 23444444444
No 131
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.28 E-value=7.3e-12 Score=96.28 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=74.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||||||+|..+..++.. + ...|+++|+.+...+.|+++... ..|+.++++|..... -....||.|++..
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~-~~~apfD~I~v~~ 149 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW-PEEAPFDRIIVTA 149 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT-GGG-SEEEEEESS
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc-ccCCCcCEEEEee
Confidence 34568999999999999999886 2 33699999999999999999863 468999999987743 3456899999987
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
....+ -..+.+.||+||++++.-
T Consensus 150 a~~~i-------------p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 150 AVPEI-------------PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp BBSS---------------HHHHHTEEEEEEEEEEE
T ss_pred ccchH-------------HHHHHHhcCCCcEEEEEE
Confidence 76554 344778899999997754
No 132
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=3.8e-11 Score=102.32 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=83.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCC---CCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSF---FEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~---~~~~~fD~Vi~ 79 (210)
...+|||+|||+|..+..+++. +..+|+++|+++.+++.++++.+.. .++.++++|+.+++. +..++||.|++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 3468999999999999999875 2348999999999999999988543 578999999987641 23578999997
Q ss_pred CCc------cchhccC--CCchH-------HHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 80 KGT------LDSLMCG--TNAPI-------SASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 80 ~~~------l~~~~~~--~~~~~-------~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
... +.+-... ..... ...+++.++.++|||||+++..+++
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 532 2111000 00011 2578899999999999999877765
No 133
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.26 E-value=5.1e-11 Score=101.35 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=80.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--C-CcEEEEcccCCCCCC--CCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--P-QLKYLQMDVRDMSFF--EDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~-~v~~~~~d~~~~~~~--~~~~fD~Vi~~ 80 (210)
...+|||+|||+|..+..+++. +..+++++|+++.+++.++++.+.. . .+.+..+|....+ . ..++||.|++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~-~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS-QWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc-ccccccccCEEEEc
Confidence 3468999999999999999875 4358999999999999999888543 2 2334666665544 2 46789999974
Q ss_pred Cc------cchhccCC--Cch-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 81 GT------LDSLMCGT--NAP-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 81 ~~------l~~~~~~~--~~~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.. +++..... ... ....+++.++.++|||||.++..+++
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 32 22210000 011 12578999999999999999988876
No 134
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.25 E-value=4.6e-11 Score=100.26 Aligned_cols=110 Identities=17% Similarity=0.246 Sum_probs=82.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C--CCcEEEEcccCCCC-CC--CCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I--PQLKYLQMDVRDMS-FF--EDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~--~~v~~~~~d~~~~~-~~--~~~~fD~Vi~~ 80 (210)
..+|||+|||+|.++...+..+..+|+++|+|+.+++.|+++... . .+++++++|+.+.. .+ ..++||+|++.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 468999999999999877766666899999999999999998743 2 36899999997742 11 25689999987
Q ss_pred CccchhccCC----CchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 81 GTLDSLMCGT----NAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 81 ~~l~~~~~~~----~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.....- .. ....+...++....++|+|||.++..+++
T Consensus 301 PP~f~~--~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 301 PPKFVE--NKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 653211 00 01135667777889999999999887765
No 135
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.25 E-value=4.4e-11 Score=93.17 Aligned_cols=95 Identities=20% Similarity=0.216 Sum_probs=77.4
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
....++||||+|.|..+..++.. +.+|++.|.|+.|....+++- .+++ |..+.. -.+.+||+|.|.++|+-
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg-----~~vl--~~~~w~-~~~~~fDvIscLNvLDR 163 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKG-----FTVL--DIDDWQ-QTDFKFDVISCLNVLDR 163 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCC-----CeEE--ehhhhh-ccCCceEEEeehhhhhc
Confidence 35568999999999999999876 448999999999988777642 3333 444443 34568999999999998
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
. ..+..+|+++++.|+|+|++++.
T Consensus 164 c-------~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 164 C-------DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred c-------CCHHHHHHHHHHHhCCCCEEEEE
Confidence 8 88999999999999999998774
No 136
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=8.8e-11 Score=100.47 Aligned_cols=111 Identities=17% Similarity=0.257 Sum_probs=82.2
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCC-CCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMS-FFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~ 82 (210)
..+|||+|||+|..+..+++. +..+++++|+++.+++.++++.+.. .++.++++|+.+.. .++ ++||+|++...
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 457999999999999999875 3458999999999999999887533 56899999998753 133 78999998654
Q ss_pred cchhcc-CC-------CchH-------HHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMC-GT-------NAPI-------SASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~-~~-------~~~~-------~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...... .. .... ....+++++.++|||||.++..+++
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 221100 00 0111 2356899999999999999876655
No 137
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.25 E-value=1.6e-12 Score=98.75 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=79.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-CCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l~~~ 86 (210)
-.++||+|||||..+..+..... +++|+|+|++|++.|.++-- --+..+.++..+- ...++.||+|++..++-++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eKg~---YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl 201 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEKGL---YDTLYVAEAVLFLEDLTQERFDLIVAADVLPYL 201 (287)
T ss_pred cceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhccc---hHHHHHHHHHHHhhhccCCcccchhhhhHHHhh
Confidence 45799999999999998877644 89999999999999988641 1123344444321 1456789999999999998
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+++.++--+...|+|||.|.+..
T Consensus 202 -------G~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 202 -------GALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred -------cchhhHHHHHHHhcCCCceEEEEe
Confidence 899999999999999999998875
No 138
>PLN02366 spermidine synthase
Probab=99.24 E-value=8.2e-11 Score=95.54 Aligned_cols=106 Identities=16% Similarity=0.226 Sum_probs=80.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCC-CCCCCCcccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDM-SFFEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~-~~~~~~~fD~Vi 78 (210)
...+||+||||.|.++..+++++ ..+++.+|+++.+++.+++.... .++++++.+|+... ...++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 35689999999999999999884 46899999999999999997642 26899999998653 212357899999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
+...-.+. ....--...+++.+++.|+|||++++
T Consensus 171 ~D~~dp~~---~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 171 VDSSDPVG---PAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EcCCCCCC---chhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 85432211 00001235789999999999999965
No 139
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.24 E-value=8.6e-11 Score=92.17 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=79.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CC----CCCCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SF----FEDESFD 75 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~----~~~~~fD 75 (210)
.+..+|||+|||+|..+..++.. +..+++++|+++.+++.|+++.+.. .+++++.+|+.+. +. .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 34568999999999988888764 3458999999999999999988543 5789999999773 10 1246899
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+|+... ....+..++..+.++|+|||.+++-
T Consensus 147 ~VfiDa----------~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDA----------DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECC----------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 998642 2356778899999999999998763
No 140
>PRK01581 speE spermidine synthase; Validated
Probab=99.23 E-value=1.1e-10 Score=95.85 Aligned_cols=108 Identities=11% Similarity=0.134 Sum_probs=79.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhh--c-------CCCCcEEEEcccCCC-CCCCCCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKY--E-------EIPQLKYLQMDVRDM-SFFEDESFD 75 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~--~-------~~~~v~~~~~d~~~~-~~~~~~~fD 75 (210)
...+||++|||+|..+..+++.+ ..+|+++|+++++++.|++.. . ..++++++.+|+.+. . ...+.||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~-~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS-SPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH-hcCCCcc
Confidence 34589999999999999998874 468999999999999999621 1 237899999999883 3 3456899
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+|++... +... .....---..+++.+++.|+|||++++..
T Consensus 229 VIIvDl~-DP~~-~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFP-DPAT-ELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCC-Cccc-cchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9998632 1110 00011123678999999999999986653
No 141
>PRK03612 spermidine synthase; Provisional
Probab=99.20 E-value=5.7e-11 Score=103.29 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=80.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC-CcEEEEeCCHHHHHHHHHh--hc-------CCCCcEEEEcccCCCCCCCCCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY-EDIVNIDISSVAIDMMKMK--YE-------EIPQLKYLQMDVRDMSFFEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~--~~-------~~~~v~~~~~d~~~~~~~~~~~fD~ 76 (210)
...+|||+|||+|..+..+++++. .+++++|+++++++.++++ .. +.++++++.+|+.+.-...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 346899999999999999998754 6999999999999999983 21 1268999999998732133578999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|++...-... .+ ...--..++++.+++.|||||.+++..
T Consensus 377 Ii~D~~~~~~-~~-~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSN-PA-LGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCC-cc-hhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9987432211 00 000112468899999999999997643
No 142
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.19 E-value=2.4e-11 Score=92.45 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=89.5
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhcc
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 88 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~ 88 (210)
..++||||+-|.+...+...+..+++.+|.|..|++.++......-.+....+|-+.++ |.++++|+|+++..+||+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ld-f~ens~DLiisSlslHW~-- 150 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLD-FKENSVDLIISSLSLHWT-- 150 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhccc-ccccchhhhhhhhhhhhh--
Confidence 35899999999999999998888999999999999999865432223567788988899 999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 89 GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 89 ~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.++...+.+++..|||+|.|+..-++
T Consensus 151 -----NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 151 -----NDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred -----ccCchHHHHHHHhcCCCccchhHHhc
Confidence 99999999999999999999765443
No 143
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.19 E-value=1.3e-10 Score=88.42 Aligned_cols=106 Identities=11% Similarity=0.142 Sum_probs=81.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-C-CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
.+..+.||.|||-|+.+..++..-+.+|..+|..+.+++.|++.... . .-.++.+..++++. ...++||+|.+.+++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~-P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT-PEEGKYDLIWIQWCL 132 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----TT-EEEEEEES-G
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc-CCCCcEeEEEehHhh
Confidence 34568999999999999988766677999999999999999987754 2 33578888888875 345799999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-|+ +..+..++|+++...|+|+|.+++-+
T Consensus 133 ghL-----TD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 133 GHL-----TDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp GGS------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC-----CHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 999 77999999999999999999998843
No 144
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.19 E-value=2.2e-10 Score=87.51 Aligned_cols=102 Identities=4% Similarity=-0.021 Sum_probs=74.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|||+|||+|.++..++..+..+|+++|.++.+++.++++.+. ..++.++++|+.+.-....++||+|+++..+..
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK 133 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC
Confidence 358999999999999876666666999999999999999988743 357899999987632023457999999877432
Q ss_pred hccCCCchHHHHHHHHHHHH--hccCCcEEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSR--LLKPGGIYMLIT 117 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r--~LkpgG~~~~~~ 117 (210)
.-...+++.+.. +|+|+|.+++..
T Consensus 134 --------g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 134 --------GLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred --------ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 123344454444 478988886554
No 145
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.18 E-value=7.3e-11 Score=95.23 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=81.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...|||+|||+|.++...++.|..+|+++|.|.-+ +.|++....+ ..++++.+.++++. +|-++.|+|++-++=+
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-LPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-cCccceeEEeehhhhH
Confidence 35699999999999999999999899999988766 8887776433 45899999999987 8889999999965544
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
++++ ..-+..++-.--++|+|||.++
T Consensus 139 ~Ll~----EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLY----ESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHH----hhhhhhhhhhhhhccCCCceEc
Confidence 4322 2566777888889999999774
No 146
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.18 E-value=1.3e-10 Score=88.43 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCCCEEEeCCCCchhH----HHHHH---c--C-CCcEEEEeCCHHHHHHHHHhh---------------------cC-C-
Q 028385 7 GTRDTCRRAAPSIVMS----EDMVK---D--G-YEDIVNIDISSVAIDMMKMKY---------------------EE-I- 53 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~----~~l~~---~--~-~~~v~~vD~s~~~~~~a~~~~---------------------~~-~- 53 (210)
...+|+..||++|.=. ..+.+ . + .-+++|+|+|+.+++.|++.. .+ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5679999999999533 33333 1 2 137999999999999998621 00 0
Q ss_pred -------CCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 54 -------PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 54 -------~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+|.|...|+.+.+ .+.+.||+|+|.++|-++ +.+...++++.+++.|+|||++++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~-~~~~~fD~I~CRNVlIYF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPD-PPFGRFDLIFCRNVLIYF-----DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------EEEEEE-SSGGGS------HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCC-cccCCccEEEecCEEEEe-----CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 46899999999833 467899999999999988 77888999999999999999997753
No 147
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.18 E-value=1e-10 Score=89.14 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=79.0
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCC-CC-CCCCCcccEEEECCccc
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRD-MS-FFEDESFDAVIDKGTLD 84 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~-~~-~~~~~~fD~Vi~~~~l~ 84 (210)
-+||||||.|.+...+++. +...++|+|+....+..+.++.. ...|+.++++|+.. +. .++++++|.|..++.==
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 5799999999999999876 66789999999999998888773 55899999999988 22 25678999998643311
Q ss_pred hhccC-CCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMCG-TNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~~-~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
|.-.. ..-+--...++..+.++|+|||.+.+.+-..
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 11000 0011134578999999999999998887443
No 148
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.2e-10 Score=88.83 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=83.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
....+|||.|.|+|.++..++.. +..+|+..|+.++.++.|+++.+.. +++++..+|+.+.. +++ .||+|+..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-~~~-~vDav~LD 170 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI-DEE-DVDAVFLD 170 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-ccc-ccCEEEEc
Confidence 34568999999999999999964 5568999999999999999998653 45899999999875 444 99999952
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+ +++.+++.+++++|||||.+++..-
T Consensus 171 -----m-------p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 171 -----L-------PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -----C-------CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 3 7899999999999999999977653
No 149
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.17 E-value=1.9e-10 Score=89.06 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=71.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
+...|.|+|||.+.++. ... ..|+..|.-. .+-.++.+|+.+.| +++++.|+++....|-
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~-~kV~SfDL~a-------------~~~~V~~cDm~~vP-l~d~svDvaV~CLSLM-- 239 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SER-HKVHSFDLVA-------------VNERVIACDMRNVP-LEDESVDVAVFCLSLM-- 239 (325)
T ss_pred CceEEEecccchhhhhh---ccc-cceeeeeeec-------------CCCceeeccccCCc-CccCcccEEEeeHhhh--
Confidence 45679999999998875 222 3799999743 35578999999999 9999999998755542
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
-.++...+.+++|+||+||.++|.+..+
T Consensus 240 ------gtn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 240 ------GTNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred ------cccHHHHHHHHHHHhccCceEEEEehhh
Confidence 2688999999999999999999998654
No 150
>PLN02672 methionine S-methyltransferase
Probab=99.16 E-value=3e-10 Score=104.62 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=83.6
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC------------------CCcEEEEcccCCCCCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI------------------PQLKYLQMDVRDMSFF 69 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------------------~~v~~~~~d~~~~~~~ 69 (210)
.+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++.+.. .+++|+++|+.+.. .
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~-~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC-R 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc-c
Confidence 47999999999999999886 4458999999999999999887421 36899999987643 1
Q ss_pred C-CCcccEEEECCccc--------------h------------h-cc----CCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 70 E-DESFDAVIDKGTLD--------------S------------L-MC----GTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 70 ~-~~~fD~Vi~~~~l~--------------~------------~-~~----~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. ...||+|+++-..- + . .+ +.++..-+.+++.+..++|||||.++ .+
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~-lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI-FN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE-EE
Confidence 1 23699999975421 0 0 11 25666778899999999999999886 44
Q ss_pred cC
Q 028385 118 YG 119 (210)
Q Consensus 118 ~~ 119 (210)
++
T Consensus 278 iG 279 (1082)
T PLN02672 278 MG 279 (1082)
T ss_pred EC
Confidence 44
No 151
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.16 E-value=3.1e-10 Score=87.07 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=75.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC------------------------------
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP------------------------------ 54 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~------------------------------ 54 (210)
.++..+|||||-+|.++..+++. +...+.|+||++..|+.|++..+...
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 35567999999999999999997 55679999999999999998764221
Q ss_pred -------CcEEEE-------cccCCCCCCCCCcccEEEECCccc--hhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 55 -------QLKYLQ-------MDVRDMSFFEDESFDAVIDKGTLD--SLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 55 -------~v~~~~-------~d~~~~~~~~~~~fD~Vi~~~~l~--~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
++.|.. .|+. . +....||+|+|-.+-- |+.. +.+.+.++++.++++|.|||++++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl--~-~~~~~fDiIlcLSiTkWIHLNw---gD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL--D-MIQPEFDIILCLSITKWIHLNW---GDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccCCcchhcccccEEEecchhh--h-hccccccEEEEEEeeeeEeccc---ccHHHHHHHHHHHHhhCcCcEEEE
Confidence 111111 1111 1 3456899999854432 3333 346789999999999999999965
No 152
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.16 E-value=2.2e-10 Score=91.96 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=80.8
Q ss_pred CCCCEEEeCCCCchhHH----HHHHc-C----CCcEEEEeCCHHHHHHHHHhh-------------------c------C
Q 028385 7 GTRDTCRRAAPSIVMSE----DMVKD-G----YEDIVNIDISSVAIDMMKMKY-------------------E------E 52 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~----~l~~~-~----~~~v~~vD~s~~~~~~a~~~~-------------------~------~ 52 (210)
+..+|+..||.||.=.- .+.+. + ..+|+|+|+|+.+++.|++.. + +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35799999999995332 23332 1 237999999999999998742 0 0
Q ss_pred -------C-CCcEEEEcccCCCCCCC-CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 53 -------I-PQLKYLQMDVRDMSFFE-DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 53 -------~-~~v~~~~~d~~~~~~~~-~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
. ..|.|.+.|+.+.+ ++ .+.||+|+|.+++.|+ +.+...++++++++.|+|||++++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~-~~~~~~fD~I~cRNvliyF-----~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQ-WAVPGPFDAIFCRNVMIYF-----DKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCC-CccCCCcceeeHhhHHhcC-----CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0 45789999998755 43 6789999999999888 6788999999999999999988654
No 153
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.8e-10 Score=84.46 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=62.9
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.|+|+|||||.++...+-.|...|+++|+++++++.++++.++. .++.|+++|+.+.. ..+|.|+.+..+-.
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~----~~~dtvimNPPFG~ 120 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR----GKFDTVIMNPPFGS 120 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----CccceEEECCCCcc
Confidence 59999999999999999888889999999999999999998654 57999999998865 57889998766543
No 154
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.11 E-value=4.9e-10 Score=83.93 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=73.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC-----CCCcEEEEcccCCC---CCCCCCcccE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDM---SFFEDESFDA 76 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~-----~~~v~~~~~d~~~~---~~~~~~~fD~ 76 (210)
....+|||+|||+|..+..++.. +..+|+..|+++ .++.++.+.+. ..++.+...|..+. .....++||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 44568999999999999999988 666999999999 88988888743 25678888887551 1123568999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+...+++.- .....+++.+.++|+++|.+++..-
T Consensus 123 IlasDv~Y~~-------~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLYDE-------ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S-G-------GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccchH-------HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999999876 8889999999999999999655543
No 155
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.09 E-value=8.1e-10 Score=94.49 Aligned_cols=99 Identities=8% Similarity=0.139 Sum_probs=75.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCC---CCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS---FFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++.. .+|+++|+|+.|++.|+++.+ +..+++++++|+.+.- .+.+++||+|+++.
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 34589999999999999999876 489999999999999998874 3367999999987521 04457899999754
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.- ......++.+.+ ++|++.+++..
T Consensus 376 Pr----------~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 376 PR----------AGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CC----------cChHHHHHHHHh-cCCCeEEEEEe
Confidence 42 223455666655 58888876654
No 156
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.07 E-value=4.9e-10 Score=86.11 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=82.8
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEE-cccCCCC-CCCCCcccEE
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQ-MDVRDMS-FFEDESFDAV 77 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~-~d~~~~~-~~~~~~fD~V 77 (210)
..+..+|||||++.|..+..|+.. + ..+++.+|+++++.+.|+++.+.. +++.... +|+.+.- ....++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 446789999999999999999886 3 458999999999999999998543 4577777 4776632 1346899999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+.. + .+.+...++..+.++|+|||.+++-.
T Consensus 137 FID----a------dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 137 FID----A------DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EEe----C------ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 953 2 35688999999999999999997744
No 157
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.07 E-value=8.2e-10 Score=87.96 Aligned_cols=74 Identities=7% Similarity=0.162 Sum_probs=63.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||||||+|.++..+++.+. +++++|+++.+++.++++....++++++++|+.+++ ++ .||.|+++..++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~-~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD-LP--EFNKVVSNLPYQ 102 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC-ch--hceEEEEcCCcc
Confidence 346899999999999999999854 899999999999999988765578999999999877 54 489999987754
No 158
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.05 E-value=7.9e-10 Score=85.83 Aligned_cols=112 Identities=18% Similarity=0.171 Sum_probs=83.1
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCC-C-CCCCcccEEEECCcc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMS-F-FEDESFDAVIDKGTL 83 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~-~-~~~~~fD~Vi~~~~l 83 (210)
..+||||||.|.+...+|+. +...++|+|+....+..|.++..+. +|+.+++.|+..+- . +++++.|-|..++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 36899999999999999987 6678999999999998888887433 59999999998842 2 456699999864331
Q ss_pred chhccC-CCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCG-TNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~-~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
=|.-.- ..-+--....++.+.++|||||.+.+.+-..
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 111000 0111235678999999999999999987443
No 159
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.05 E-value=1e-09 Score=89.89 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=60.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
..+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++.+. ..+++|+++|+.++.....+.||+|+....
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 4689999999999999999976 4899999999999999988743 367999999998754113457999997643
No 160
>PLN02476 O-methyltransferase
Probab=99.04 E-value=9.5e-10 Score=87.70 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=80.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CCC----CCCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFF----EDESFD 75 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~~----~~~~fD 75 (210)
.+..+|||||+++|..+..++.. ...+++.+|.+++..+.|+++++.. ++++++.+|+.+. +.+ ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 45568999999999999999874 2347999999999999999988543 5799999998763 211 136899
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+|+... +..+...+++.+.++|+|||.+++-
T Consensus 197 ~VFIDa----------~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDA----------DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECC----------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999542 3467899999999999999998764
No 161
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=9.8e-09 Score=75.64 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=90.0
Q ss_pred CCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.-+||||||+|..+.++++. +...+.++|++|.+++..++..+.. -+++.++.|+.+. ...++.|+++.+..+--
T Consensus 45 ~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~--l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 45 EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG--LRNESVDVLVFNPPYVP 122 (209)
T ss_pred eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh--hccCCccEEEECCCcCc
Confidence 34799999999999999886 4456899999999999877766432 4678899998774 34589999998754321
Q ss_pred --------------hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC--CchhhHhhh
Q 028385 86 --------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG--DPKARMIHL 128 (210)
Q Consensus 86 --------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~--~p~~~~~~~ 128 (210)
+.-|..++.-..+++..+-.+|.|.|+++++... .|.......
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l 181 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKIL 181 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHH
Confidence 2344567778889999999999999999998765 455444433
No 162
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.01 E-value=4.4e-09 Score=83.57 Aligned_cols=75 Identities=11% Similarity=0.160 Sum_probs=62.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCccc---EEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFD---AVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD---~Vi~~~~ 82 (210)
....+|||+|||+|.++..+++.+. +++++|+++.+++.++++....++++++.+|+...+ ++ .|| +|+++..
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~-~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVD-LP--DFPKQLKVVSNLP 103 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCC-hh--HcCCcceEEEcCC
Confidence 3446899999999999999999875 799999999999999988755578999999999877 54 466 7887665
Q ss_pred cc
Q 028385 83 LD 84 (210)
Q Consensus 83 l~ 84 (210)
++
T Consensus 104 y~ 105 (253)
T TIGR00755 104 YN 105 (253)
T ss_pred hh
Confidence 43
No 163
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.01 E-value=1.4e-09 Score=87.35 Aligned_cols=75 Identities=8% Similarity=0.124 Sum_probs=62.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++.+. +++++|+++.|++.++++... ++++++++|+.+++ +++-.+|.|+++..++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~~-~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKVD-LSELQPLKVVANLPYN 116 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcCC-HHHcCcceEEEeCCcc
Confidence 345899999999999999999865 899999999999999987754 78999999999887 5442358888876643
No 164
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.00 E-value=1.7e-09 Score=82.94 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=79.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-C----CCCCCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-S----FFEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~----~~~~~~fD~ 76 (210)
+..+||||||++|..+..+++. ...+++.+|.++...+.|++.++.. .+++++.+|+.+. + ....++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4568999999999999999985 2458999999999999999987532 5799999998763 2 112358999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+... ...++...+..+.++|+|||.+++-.
T Consensus 125 VFiDa----------~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----------DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----------TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----------cccchhhHHHHHhhhccCCeEEEEcc
Confidence 99643 24677889999999999999997643
No 165
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.99 E-value=3.3e-09 Score=80.40 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=78.0
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCc-EEEEcccCCCC-CC------CCCcccEEE
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQL-KYLQMDVRDMS-FF------EDESFDAVI 78 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v-~~~~~d~~~~~-~~------~~~~fD~Vi 78 (210)
+|||||||||.-+..+++. +.....-.|+++......++... ..+|+ .-+..|+...+ .. ..++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 6999999999999999987 55577788999888655555432 22333 23455666543 02 356899999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+.+++|-+ +....+.+++.+.++|++||.+++.
T Consensus 108 ~~N~lHI~-----p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 108 CINMLHIS-----PWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ehhHHHhc-----CHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 99999987 6689999999999999999999774
No 166
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.97 E-value=6.2e-09 Score=82.67 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=82.0
Q ss_pred CCCCEEEeCCCCch----hHHHHHHcC------CCcEEEEeCCHHHHHHHHHhh-c---------------------C--
Q 028385 7 GTRDTCRRAAPSIV----MSEDMVKDG------YEDIVNIDISSVAIDMMKMKY-E---------------------E-- 52 (210)
Q Consensus 7 ~~~~vLdiGcG~G~----~~~~l~~~~------~~~v~~vD~s~~~~~~a~~~~-~---------------------~-- 52 (210)
+..+|+-.||+||. ++..+.+.. ..+|+|+|+|..+++.|++-. . +
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999994 333333332 247999999999999997521 0 0
Q ss_pred C-------CCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 53 I-------PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 53 ~-------~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. ..|.|...|+..-+ +..+.||+|+|.+++-++ ..+...+++..++..|+|||++++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~-~~~~~fD~IfCRNVLIYF-----d~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDS-PFLGKFDLIFCRNVLIYF-----DEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCc-cccCCCCEEEEcceEEee-----CHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 0 35788888887765 467789999999999888 77889999999999999999997754
No 167
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=1e-08 Score=80.25 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=81.4
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC---C-CCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM---S-FFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~---~-~~~~~~fD~Vi~~ 80 (210)
..|||+|||+|..+..++.. +.+.++++|.|+.++..|.++.... ..+.++..+++.- + ....+++|+++++
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecC
Confidence 36999999999999999876 6678999999999999999987433 5566665544432 1 2567899999998
Q ss_pred Cccch-------------------hccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDS-------------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~-------------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
..+-- +..+..+...+..++.-+.|.|+|||.+.+-..
T Consensus 230 PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 230 PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 65310 112224556777888899999999999866543
No 168
>PLN02823 spermine synthase
Probab=98.96 E-value=7e-09 Score=85.24 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=78.5
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..+||.||+|.|..+..+++. +..+++.+|+++.+++.|++.... .++++++.+|+...-...+++||+|+..
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 458999999999999999886 456899999999999999988742 2789999999988421446789999975
Q ss_pred CccchhccCCCchHHHHHHHH-HHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLG-EVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~-~i~r~LkpgG~~~~~ 116 (210)
.. +....+....---.++++ .+.+.|+|||++++.
T Consensus 184 ~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 184 LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 31 111000000001245676 889999999998653
No 169
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.93 E-value=5.9e-09 Score=87.28 Aligned_cols=98 Identities=11% Similarity=0.077 Sum_probs=72.6
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+|||++||+|.++..++..+ .+|+++|+++.+++.|+++.+. ..+++|.++|+.+......+.||+|+....-..+
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~ 313 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI 313 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence 579999999999999999776 4899999999999999988743 3579999999976430122469999976543211
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..++++.+. .++|++.+++..
T Consensus 314 ---------~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 314 ---------GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred ---------cHHHHHHHH-hcCCCeEEEEEe
Confidence 234445554 368988776654
No 170
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.93 E-value=9.2e-09 Score=78.11 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=72.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CCC-CC-CcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFF-ED-ESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~~-~~-~~fD~Vi~~~ 81 (210)
..+|||++||+|.++..++.++..+|+++|.++.+++.++++.+.. .+++++++|+.+. ..+ .. ..||+|+...
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 4689999999999999999998878999999999999999887433 3688999999552 211 12 2478888765
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.+.. ......-..+.+ ..+|+++|.+++-
T Consensus 130 Py~~-----~~~~~~l~~l~~-~~~l~~~~iiv~E 158 (189)
T TIGR00095 130 PFFN-----GALQALLELCEN-NWILEDTVLIVVE 158 (189)
T ss_pred CCCC-----CcHHHHHHHHHH-CCCCCCCeEEEEE
Confidence 5431 111222233333 3478888877544
No 171
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.93 E-value=8.2e-09 Score=80.35 Aligned_cols=91 Identities=12% Similarity=0.143 Sum_probs=61.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCc-EEEEcccCCCC--C--CCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQL-KYLQMDVRDMS--F--FEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v-~~~~~d~~~~~--~--~~~~~fD~Vi~~~ 81 (210)
....|||+|||+|.++..+++.|..+|+++|+++.|+....+.. +++ .+...|+.... . ..-..+|+++.+.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~ 151 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRYVTPADIFPDFATFDVSFISL 151 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCcccCCHhHcCCCceeeeEEEeeh
Confidence 44579999999999999999998778999999998887622222 232 23444444322 0 1123567666432
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
...+..+.++|++ |.+++.
T Consensus 152 ---------------~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 152 ---------------ISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred ---------------HhHHHHHHHHhCc-CeEEEE
Confidence 3358889999999 776554
No 172
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.92 E-value=3.2e-09 Score=90.40 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=71.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcC-----CCcEEEEeCCHHHHHHHHHhh--cCC-CCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG-----YEDIVNIDISSVAIDMMKMKY--EEI-PQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~--~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
...|+|+|||+|.++...++.+ ..+|+++|-++.++...+++. .+. ++|+++.+|+++.. . ..+.|+||+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~-l-pekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE-L-PEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC-H-SS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC-C-CCceeEEEE
Confidence 3569999999999998887753 458999999999888776652 333 68999999999987 3 459999998
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
=. +..+++. +-..+.+....|.|||||.++
T Consensus 265 El-LGsfg~n----El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 EL-LGSFGDN----ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ----BTTBTT----TSHHHHHHHGGGGEEEEEEEE
T ss_pred ec-cCCcccc----ccCHHHHHHHHhhcCCCCEEe
Confidence 32 1222121 345567899999999999774
No 173
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.92 E-value=5.5e-09 Score=89.19 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=72.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCC-CC--CCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDM-SF--FEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~-~~--~~~~~fD~Vi~~~ 81 (210)
+..+|||+|||+|.++..+++... +|+++|+++.+++.|+++.. ...+++|+.+|+.+. +. +.+++||+|+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 345899999999999999988754 89999999999999999874 336899999998762 21 3356799999643
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.-.. ....+++.+.+ ++|++.+++.
T Consensus 371 Pr~G---------~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 371 PRKG---------CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CCCC---------CCHHHHHHHHh-cCCCEEEEEc
Confidence 3111 12455555554 7888876553
No 174
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.91 E-value=4.1e-09 Score=82.84 Aligned_cols=98 Identities=16% Similarity=0.245 Sum_probs=76.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCC---CCcccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFE---DESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~---~~~fD~Vi 78 (210)
...+|||.|.|+|.++..+++. +..+|+..|+.++..+.|+++++.. .++++...|+...- |. ++.+|.|+
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g-~~~~~~~~~Davf 118 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG-FDEELESDFDAVF 118 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG---STT-TTSEEEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc-ccccccCcccEEE
Confidence 3468999999999999999975 5568999999999999999998543 57999999997533 32 36799998
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhc-cCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLL-KPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~L-kpgG~~~~~~ 117 (210)
.. + +++..++..+.++| |+||++.+.+
T Consensus 119 LD-----l-------p~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 119 LD-----L-------PDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp EE-----S-------SSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred Ee-----C-------CCHHHHHHHHHHHHhcCCceEEEEC
Confidence 52 3 67888999999999 8999997765
No 175
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.89 E-value=1.4e-08 Score=82.80 Aligned_cols=80 Identities=11% Similarity=0.018 Sum_probs=58.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC----CCcEEEE-cccCCCC-C--CCCCcccE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQ-MDVRDMS-F--FEDESFDA 76 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~----~~v~~~~-~d~~~~~-~--~~~~~fD~ 76 (210)
....++||||||+|.+...++.. ...+++|+|+++.+++.|+++.+.. .++.+.. .|..++. . .+++.||+
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 34578999999999777666654 4458999999999999999988644 2566643 3433322 0 24678999
Q ss_pred EEECCccch
Q 028385 77 VIDKGTLDS 85 (210)
Q Consensus 77 Vi~~~~l~~ 85 (210)
|+|+..++.
T Consensus 193 ivcNPPf~~ 201 (321)
T PRK11727 193 TLCNPPFHA 201 (321)
T ss_pred EEeCCCCcC
Confidence 999988764
No 176
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.88 E-value=8.2e-09 Score=83.51 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=62.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||||||+|.++..+++.+. +++++|+++.+++.++++... .++++++++|+...+ + ..||.|+++..+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-~--~~~d~VvaNlPY 111 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-F--PYFDVCVANVPY 111 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-c--cccCEEEecCCc
Confidence 445799999999999999998754 899999999999999988743 368999999998765 4 368999988766
Q ss_pred c
Q 028385 84 D 84 (210)
Q Consensus 84 ~ 84 (210)
+
T Consensus 112 ~ 112 (294)
T PTZ00338 112 Q 112 (294)
T ss_pred c
Confidence 5
No 177
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.8e-08 Score=81.85 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=85.4
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEc-ccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQM-DVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~-d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..|||-=||||.+.....-.|. +++|+|++..|++-++.+.+.. ....+... |+.++| ++++++|.|++....--
T Consensus 199 ~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l~~~~vdaIatDPPYGr 276 (347)
T COG1041 199 ELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-LRDNSVDAIATDPPYGR 276 (347)
T ss_pred CEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-CCCCccceEEecCCCCc
Confidence 3799999999999998888787 8999999999999999998654 45555666 999999 99999999998643321
Q ss_pred hccCCCc--hHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNA--PISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~--~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
-..-... ..-..++++.+.++||+||++++...
T Consensus 277 st~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 277 STKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1000111 24578999999999999999988764
No 178
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.87 E-value=4.7e-09 Score=82.64 Aligned_cols=100 Identities=10% Similarity=0.063 Sum_probs=79.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CCC-----CCCcc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFF-----EDESF 74 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~~-----~~~~f 74 (210)
.+..+|||||+++|..+..++.. ...+++.+|.++...+.|++.++.. .+++++.+|+.+. +.+ ..++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 45668999999999999988874 3458999999999999999988533 6899999998773 211 13689
Q ss_pred cEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 75 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 75 D~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
|+|+... ........+..+.++|+|||.+++
T Consensus 158 D~iFiDa----------dK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 158 DFIFVDA----------DKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cEEEecC----------CHHHhHHHHHHHHHhcCCCeEEEE
Confidence 9999642 246778888999999999999865
No 179
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.87 E-value=1.6e-08 Score=84.29 Aligned_cols=110 Identities=17% Similarity=0.187 Sum_probs=88.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC--CCcEEEEcccCCCC---CCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI--PQLKYLQMDVRDMS---FFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~--~~v~~~~~d~~~~~---~~~~~~fD~Vi~~ 80 (210)
..+||++=|=||.++...+..|..+|++||.|..+++.|+++.+ +. ..+.|+++|+..+- .-...+||+|+..
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 45799999999999999999888899999999999999999984 22 45789999987742 1234589999975
Q ss_pred CccchhccCC------CchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 81 GTLDSLMCGT------NAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 81 ~~l~~~~~~~------~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
.. .|+. +-..+...++..+.++|+|||.+++++....
T Consensus 298 PP----sF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 298 PP----SFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred Cc----ccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 33 2332 2346888999999999999999999887643
No 180
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=3.8e-09 Score=74.98 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=63.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+++|+|||+|.++......+...+.|+|+++++++.++++.+.. -++++.++|+.++. +..+.||.++.+..+
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle-~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE-LKGGIFDTAVINPPF 124 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh-ccCCeEeeEEecCCC
Confidence 4579999999999997776666668999999999999999988654 56799999999987 778999999976543
No 181
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.82 E-value=4.5e-08 Score=78.92 Aligned_cols=75 Identities=9% Similarity=0.047 Sum_probs=60.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC-CCCC--cccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-FEDE--SFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~--~fD~Vi~~~~ 82 (210)
...++|.+||.|..+..+++.. ...|+|+|.++.|++.++++.....++.++++|..++.. .+++ ++|.|+....
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEECCC
Confidence 3579999999999999999873 358999999999999999887544579999999988641 1122 7999888543
No 182
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.82 E-value=3.7e-08 Score=74.20 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=71.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCc---------EEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYED---------IVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDES 73 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~---------v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~ 73 (210)
....|||--||+|.+..+.+.. .... ++|+|+++.+++.|+++.+.. ..+.+.+.|+.+++ +.+++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~-~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP-LPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-GTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-cccCC
Confidence 3457999999999999887654 2223 889999999999999988532 45899999999998 88899
Q ss_pred ccEEEECCccchhcc-CCCchHHHHHHHHHHHHhccC
Q 028385 74 FDAVIDKGTLDSLMC-GTNAPISASQMLGEVSRLLKP 109 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~-~~~~~~~~~~~l~~i~r~Lkp 109 (210)
+|+|+++..+---.. ......-+.++++++.++|++
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 999999754321100 001123456778999999998
No 183
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.82 E-value=3e-08 Score=79.74 Aligned_cols=98 Identities=13% Similarity=0.166 Sum_probs=74.3
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.-|||+|||+|.++...++.|.++|++++.| +|.+.|++..+.+ +++.++.+-+++++ + .++.|+||+-.+ ..
T Consensus 179 kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-L-PEk~DviISEPM-G~ 254 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE-L-PEKVDVIISEPM-GY 254 (517)
T ss_pred cEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc-C-chhccEEEeccc-hh
Confidence 4589999999999999999999999999955 6888888877543 68999999999987 4 468999997432 22
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
+++ +..-++.. -..+|.|||.|..+
T Consensus 255 mL~---NERMLEsY-l~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 255 MLV---NERMLESY-LHARKWLKPNGKMF 279 (517)
T ss_pred hhh---hHHHHHHH-HHHHhhcCCCCccc
Confidence 222 22333333 44569999999874
No 184
>PRK04148 hypothetical protein; Provisional
Probab=98.81 E-value=8.9e-08 Score=68.04 Aligned_cols=95 Identities=13% Similarity=0.177 Sum_probs=72.1
Q ss_pred CCCCEEEeCCCCch-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCC-CCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIV-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-DESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Vi~~~~l~ 84 (210)
...+|||||||+|. ++..+.+.|. +|+++|+++.+++.++++. ++++.+|+.+.. +. -+.+|+|.+.-
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~-----~~~v~dDlf~p~-~~~y~~a~liysir--- 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG-----LNAFVDDLFNPN-LEIYKNAKLIYSIR--- 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC-----CeEEECcCCCCC-HHHHhcCCEEEEeC---
Confidence 34689999999995 8888888877 9999999999999887753 688999998754 22 35689998732
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+..+.+..+-++.+- -|.-+++..++.
T Consensus 86 -------pp~el~~~~~~la~~--~~~~~~i~~l~~ 112 (134)
T PRK04148 86 -------PPRDLQPFILELAKK--INVPLIIKPLSG 112 (134)
T ss_pred -------CCHHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 336677777777765 456677776554
No 185
>PRK00536 speE spermidine synthase; Provisional
Probab=98.80 E-value=5.5e-08 Score=77.11 Aligned_cols=97 Identities=9% Similarity=0.174 Sum_probs=73.8
Q ss_pred CCCCCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCCCCCCCCccc
Q 028385 2 ATPSTGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFD 75 (210)
Q Consensus 2 ~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~fD 75 (210)
|+.+. +.+||=||.|.|..++++++++. +|+.+|+++.+++.+++.... -|+++++.. +. . ...++||
T Consensus 68 ~~h~~-pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~-~~~~~fD 141 (262)
T PRK00536 68 CTKKE-LKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--D-LDIKKYD 141 (262)
T ss_pred hhCCC-CCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--h-ccCCcCC
Confidence 34333 46899999999999999999975 999999999999999996532 267777752 11 1 2347899
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+||..... .....+.++|.|+|||.++..
T Consensus 142 VIIvDs~~------------~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 142 LIICLQEP------------DIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEEcCCC------------ChHHHHHHHHhcCCCcEEEEC
Confidence 99975321 145678899999999999653
No 186
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.79 E-value=5.2e-08 Score=78.10 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=79.8
Q ss_pred CCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC-----C-CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE-----I-PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-----~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
.+||-||-|.|..++.++++. ..+++.+|+++.+++.+++.... . ++++++..|..+.-.-..++||+|+...
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 489999999999999999984 56899999999999999998742 2 7889999998874212233899999743
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+=. . |....---..+++.+++.|+++|+++..
T Consensus 158 tdp-~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-V--GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-C--CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 211 1 0000012368899999999999999776
No 187
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.78 E-value=1.1e-08 Score=77.28 Aligned_cols=104 Identities=15% Similarity=0.216 Sum_probs=75.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCC-CCC--CCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRD-MSF--FEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~-~~~--~~~~~fD~Vi~~ 80 (210)
...++||+-||+|.++.+.+.+|..+|+.+|.++.++...+++.+.. .++.++..|+.. +.. .....||+|+..
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 34689999999999999999999989999999999999999988543 357888888654 221 146899999987
Q ss_pred CccchhccCCCchHHHHHHHHHHH--HhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVS--RLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~--r~LkpgG~~~~~~ 117 (210)
..+..- ....+++..+. .+|+++|.+++-.
T Consensus 122 PPY~~~-------~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 122 PPYAKG-------LYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp -STTSC-------HHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCcccc-------hHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 766542 22477777776 7999999885544
No 188
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.78 E-value=5e-08 Score=77.40 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=79.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc----------------------------------
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE---------------------------------- 51 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---------------------------------- 51 (210)
....+||--|||.|+++..++..|+ .+.|.|.|--|+-...-...
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4456899999999999999999999 89999999998655432110
Q ss_pred --------CCCCcEEEEcccCCCCCCC---CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 52 --------EIPQLKYLQMDVRDMSFFE---DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 52 --------~~~~v~~~~~d~~~~~~~~---~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
...++....+|+.... .+ .++||+|+..+.++-. ++..++++.|.++|||||.++=
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y-~~~~~~~~~d~VvT~FFIDTA-------~Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVY-GPDENKGSFDVVVTCFFIDTA-------ENIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred cCcccccCCCCceeEecCccEEec-CCcccCCcccEEEEEEEeech-------HHHHHHHHHHHHHhccCCEEEe
Confidence 0124566667776654 23 3799999999888877 9999999999999999998754
No 189
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.77 E-value=4.2e-08 Score=78.74 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=79.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC--CCcEEEEcccCCC-CC-CCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI--PQLKYLQMDVRDM-SF-FEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~--~~v~~~~~d~~~~-~~-~~~~~fD~Vi~~~ 81 (210)
..+|||+=|=||.++...+..|..+|+.+|.|..+++.++++.. +. .+++|++.|+.+. .. -..++||+||+..
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 46899999999999999888888789999999999999999874 32 4789999998763 10 1246899999854
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.-.. -....-..++.+++..+.++|+|||.+++++++
T Consensus 204 PsF~-k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 204 PSFA-KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp SSEE-SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCC-CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3211 001112357888999999999999999887765
No 190
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.76 E-value=8.2e-09 Score=81.25 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=81.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhcc
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 88 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~ 88 (210)
-.++|+|||+|..+. ..+.+.++|.|++...+..+++.. ......+|+.++| +.+.+||.+++..++||+..
T Consensus 47 sv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~----~~~~~~ad~l~~p-~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSG----GDNVCRADALKLP-FREESFDAALSIAVIHHLST 118 (293)
T ss_pred ceeeecccCCcccCc---CCCcceeeecchhhhhccccccCC----CceeehhhhhcCC-CCCCccccchhhhhhhhhhh
Confidence 468999999998752 335557999999999888887653 2267889999999 99999999999999999833
Q ss_pred CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 89 GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 89 ~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+....++++++.|+|+|||..++..++
T Consensus 119 ----~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 119 ----RERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred ----HHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 367789999999999999997776554
No 191
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.76 E-value=4.9e-08 Score=84.74 Aligned_cols=113 Identities=8% Similarity=-0.063 Sum_probs=82.3
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCC-CCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l 83 (210)
...+||||||.|.++..++.. +...++|+|+....+..+.++.. +..|+.+.+.|+..+. .++++++|.|+.++.=
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPD 427 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPD 427 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCC
Confidence 456899999999999999886 66689999999988887777653 3478888888876432 3778999999865432
Q ss_pred chhcc-CCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMC-GTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~-~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
=|.-- ...-+--....++.+.++|||||.+.+.+-..
T Consensus 428 PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 428 PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 11100 00111234678999999999999998887443
No 192
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.74 E-value=2.1e-08 Score=76.74 Aligned_cols=111 Identities=18% Similarity=0.296 Sum_probs=84.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C--CCcEEEEcccCCC-CCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I--PQLKYLQMDVRDM-SFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~--~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~ 81 (210)
...+|||...|-|..+...++.|..+|+.++.++..++.|.-+--. . ..++++.+|+.+. +.|+|.+||+|+-..
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence 3468999999999999999999988999999999999998765321 1 4689999998884 348999999998532
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.= ++.-+.--..++.++++|+|||||.++-.. ++|.
T Consensus 214 PR----fS~AgeLYseefY~El~RiLkrgGrlFHYv-G~Pg 249 (287)
T COG2521 214 PR----FSLAGELYSEEFYRELYRILKRGGRLFHYV-GNPG 249 (287)
T ss_pred Cc----cchhhhHhHHHHHHHHHHHcCcCCcEEEEe-CCCC
Confidence 21 222223345788999999999999996543 3443
No 193
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.74 E-value=1.5e-08 Score=83.79 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=87.5
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.++|+|||-|.....+.....+.++|+|+++.-+.++....... ....++.+|+.+.| +++++||.+-+..+..|.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-fedn~fd~v~~ld~~~~~ 191 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-FEDNTFDGVRFLEVVCHA 191 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-CCccccCcEEEEeecccC
Confidence 68999999999999998887779999999998888776655321 33456899999999 999999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++...+++|++|++||||.++..++
T Consensus 192 -------~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 192 -------PDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred -------CcHHHHHHHHhcccCCCceEEeHHH
Confidence 9999999999999999999987554
No 194
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.72 E-value=7.3e-08 Score=80.71 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=74.6
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.+|||++||+|..+..++.. +..+|+++|+++.+++.++++.+ +..++.+.++|+..+. ...+.||+|+....
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l-~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL-HEERKFDVVDIDPF--- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH-hhcCCCCEEEECCC---
Confidence 57999999999999999775 54589999999999999998874 3356779999987642 11467999986421
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.....++....+.+++||.+++.
T Consensus 135 --------Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 --------GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --------CCcHHHHHHHHHHhcCCCEEEEE
Confidence 22345777767778999999886
No 195
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=8.8e-08 Score=75.45 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCC-cccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDE-SFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~-~fD~Vi~~~~l~ 84 (210)
+..|||||+|.|.++..+++.+. .|+++|+++.++...+++.....+++++.+|+...+ ++.- .++.|+++-.+.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d-~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD-FPSLAQPYKVVANLPYN 106 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCc-chhhcCCCEEEEcCCCc
Confidence 56899999999999999999977 799999999999999999876689999999999987 6543 688999886654
No 196
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.71 E-value=1.4e-07 Score=76.49 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=85.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
....+|+|.|.|..+..+... +.++-+++.+...+..+...+. +.|+.+-+|+.+- .|. -|+|+..+++||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~--~P~--~daI~mkWiLhdw- 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQD--TPK--GDAIWMKWILHDW- 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc--CCcceeccccccc--CCC--cCeEEEEeecccC-
Confidence 456799999999999999984 5579999999888888777764 4588888887663 233 3599999999999
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+.++..++|+++++.|+|||.+++.+...|.
T Consensus 250 ----tDedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 250 ----TDEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred ----ChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 8899999999999999999999999875543
No 197
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.68 E-value=1.1e-08 Score=86.48 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=67.6
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcE--EEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDI--VNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v--~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
.+||+|||+|+++..|.+++...+ .--|..+..++.|.++- .+- .+-...-..+| |++++||+|.|..++...
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG--vpa-~~~~~~s~rLP-fp~~~fDmvHcsrc~i~W- 194 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG--VPA-MIGVLGSQRLP-FPSNAFDMVHCSRCLIPW- 194 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC--cch-hhhhhcccccc-CCccchhhhhcccccccc-
Confidence 469999999999999998765211 11244556667666553 111 11122235688 999999999999887643
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. .+-..++-++.|+|+|||+|+...
T Consensus 195 -~----~~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 195 -H----PNDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred -h----hcccceeehhhhhhccCceEEecC
Confidence 1 222458999999999999997754
No 198
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.8e-07 Score=70.67 Aligned_cols=97 Identities=18% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcC------------CCCcEEEEcccCCCCCCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEE------------IPQLKYLQMDVRDMSFFED 71 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~------------~~~v~~~~~d~~~~~~~~~ 71 (210)
...+.||+|+|+|.++..++.. .....+|||.-++.++.++++... ..++.++.+|..... -+.
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~-~e~ 160 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY-AEQ 160 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC-Ccc
Confidence 3467999999999999888854 233459999999999999988732 156889999999876 577
Q ss_pred CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 72 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..||.|.+-. ...+..+++..-|++||.+++--
T Consensus 161 a~YDaIhvGA-------------aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 161 APYDAIHVGA-------------AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CCcceEEEcc-------------CccccHHHHHHhhccCCeEEEee
Confidence 8999999753 23455677788899999997753
No 199
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.66 E-value=5.5e-07 Score=64.84 Aligned_cols=100 Identities=25% Similarity=0.337 Sum_probs=73.3
Q ss_pred EEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCC--cEEEEcccCC--CCCCCC-CcccEEEECCcc
Q 028385 11 TCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQ--LKYLQMDVRD--MSFFED-ESFDAVIDKGTL 83 (210)
Q Consensus 11 vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~--v~~~~~d~~~--~~~~~~-~~fD~Vi~~~~l 83 (210)
++|+|||+|... .+..... ..++++|+++.++..++........ +.+...|... .+ +.. ..||++......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP-FEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC-CCCCCceeEEeeeeeh
Confidence 999999999976 3333322 3789999999999986655422111 5788888876 56 666 589999444444
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++. . ....+.++.+.++|+|.+++.....
T Consensus 130 ~~~-------~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLL-------P-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcC-------C-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 444 2 7899999999999999998877653
No 200
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.65 E-value=4.7e-07 Score=71.86 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=83.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-C--CCcEEEEeCCHHHHHHHHHhhcC--CCCc-EEEEcccCCCCCC--CCCcccEE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-G--YEDIVNIDISSVAIDMMKMKYEE--IPQL-KYLQMDVRDMSFF--EDESFDAV 77 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~--~~~v~~vD~s~~~~~~a~~~~~~--~~~v-~~~~~d~~~~~~~--~~~~fD~V 77 (210)
..+.+||||.||.|......... + ..++...|+|+..++..++..++ ..++ +|.++|+.+...+ -+-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35578999999999998887765 3 25899999999999999998854 3555 9999999884312 23357999
Q ss_pred EECCccchhccCCCchH-HHHHHHHHHHHhccCCcEEEEEE
Q 028385 78 IDKGTLDSLMCGTNAPI-SASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~-~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+.++.++.+ +.. -....++-+.+++.|||+++.+.
T Consensus 214 iVsGL~ElF-----~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELF-----PDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEecchhhC-----CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999998876 333 36678999999999999996653
No 201
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.65 E-value=4.2e-07 Score=77.94 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=83.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||++||.|.=+..++.. +...+++.|+++..++.++++.+.. .++.+...|...+.....+.||.|+...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 44468999999999999998875 3347999999999999999888643 6788888888775323346799999643
Q ss_pred ccchhc-cCCCc-------h-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLM-CGTNA-------P-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~-~~~~~-------~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...... +..++ . .-..++|.+..+.|||||.++-.+++
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 321110 00111 0 13468899999999999999877776
No 202
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.65 E-value=9.1e-08 Score=72.15 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=75.0
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
+++|||+|.|..+..++-. +..+++.+|.+..-+...+.-.. +.+|+++++..+++ + ....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~-~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P-EYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T-TTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c-ccCCCccEEEeehh----
Confidence 6999999999999888754 66689999999866665554443 33789999999998 4 46789999999765
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.....++.-+...+++||.+++.-
T Consensus 125 -------~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -------APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -------SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -------cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 556788899999999999998765
No 203
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.62 E-value=6.2e-07 Score=70.31 Aligned_cols=76 Identities=13% Similarity=0.224 Sum_probs=64.1
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
+...+.-|||+|.|||.++..+++.+. +|+++++++.|+....++..+.+ ..++..+|....+ + -.||.+|++
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-~--P~fd~cVsN 130 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-L--PRFDGCVSN 130 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-C--cccceeecc
Confidence 445556799999999999999999877 89999999999999999987663 6899999998866 3 369999986
Q ss_pred Ccc
Q 028385 81 GTL 83 (210)
Q Consensus 81 ~~l 83 (210)
...
T Consensus 131 lPy 133 (315)
T KOG0820|consen 131 LPY 133 (315)
T ss_pred CCc
Confidence 554
No 204
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.61 E-value=5.9e-07 Score=68.14 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=86.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-CCCCcEEEEcccCCC-CCCCCCcccEEEECCcc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-EIPQLKYLQMDVRDM-SFFEDESFDAVIDKGTL 83 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l 83 (210)
++.++||++|=|-|.....+.+.+..+-+-++..++.++.++.... +..||....+-.++. +.++++.||-|+....-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5668999999999999988888766678899999999999998763 336788888877773 35789999999875544
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++. ++.....+.+.|+|||+|+|-...
T Consensus 180 e~y-------Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELY-------EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHH-------HHHHHHHHHHhhhcCCCceEEEec
Confidence 555 888999999999999999986654
No 205
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.59 E-value=6e-08 Score=76.64 Aligned_cols=108 Identities=17% Similarity=0.246 Sum_probs=77.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc------CCCCcEEEEcccCCCCCCCCC-cccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSFFEDE-SFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~------~~~~v~~~~~d~~~~~~~~~~-~fD~Vi 78 (210)
...+||-||-|.|..+..+.+++ ..+++.+|+++.+++.|++... ..++++++..|+...-.-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 45689999999999999999885 5689999999999999998753 127899999999773212233 899999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
....- .. +....---...++.+++.|+|||++++-.
T Consensus 156 ~D~~d-p~--~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTD-PD--GPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSS-TT--SCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCC-CC--CCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 74321 11 00000113688999999999999997754
No 206
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.59 E-value=3e-07 Score=72.56 Aligned_cols=108 Identities=20% Similarity=0.195 Sum_probs=74.1
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC------------------C------------CCc-E
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE------------------I------------PQL-K 57 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~------------------~------------~~v-~ 57 (210)
.++||||||+-.....-+..-..+++..|+++...+..++-.++ . ..| .
T Consensus 58 ~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~ 137 (256)
T PF01234_consen 58 ETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQ 137 (256)
T ss_dssp EEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEE
T ss_pred CEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhce
Confidence 47899999996554333333455899999999988766543211 0 112 4
Q ss_pred EEEcccCCCCCCCC-----CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 58 YLQMDVRDMSFFED-----ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 58 ~~~~d~~~~~~~~~-----~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++.+|+.+.+.+.. ..||+|++.++|+.+ ..+.+...++++++.++|||||.|++...-
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a---~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESA---CKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH----SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHH---cCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 78889988542333 359999999999876 235678999999999999999999987643
No 207
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.59 E-value=5.4e-07 Score=67.50 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=81.2
Q ss_pred CCCC-CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CCCCC-Cccc
Q 028385 2 ATPS-TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFFED-ESFD 75 (210)
Q Consensus 2 ~~~~-~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~~~~-~~fD 75 (210)
+.+. ....++||+=+|+|.++.+.+.+|...++.+|.+..++...+++.+.. .++.++..|+... +.... +.||
T Consensus 37 l~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 37 LAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred ccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCccc
Confidence 3452 556789999999999999999999989999999999999999988543 5778888888753 11222 2599
Q ss_pred EEEECCccchhccCCCchHHHHHHHHH--HHHhccCCcEEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGE--VSRLLKPGGIYMLIT 117 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~--i~r~LkpgG~~~~~~ 117 (210)
+|+....++. ..-+....+.. -..+|+|+|.+++-.
T Consensus 117 lVflDPPy~~------~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 117 LVFLDPPYAK------GLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred EEEeCCCCcc------chhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 9998777652 11222333333 567899999996544
No 208
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.59 E-value=7.5e-07 Score=72.74 Aligned_cols=103 Identities=11% Similarity=0.103 Sum_probs=75.5
Q ss_pred CCEEEeCCCCchhHHHHHHc-----CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEE--EEcccCCC----CC-CCCCcc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-----GYEDIVNIDISSVAIDMMKMKYE--EIPQLKY--LQMDVRDM----SF-FEDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-----~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~--~~~d~~~~----~~-~~~~~f 74 (210)
..|+|+|||+|.=+..+++. ....++++|+|..+++.+.++.. ..+++.+ +++|..+. +. ......
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 47999999999877666543 12379999999999999999886 3477766 78887663 20 112345
Q ss_pred cEEEECCccchhccCCCchHHHHHHHHHHHH-hccCCcEEEE
Q 028385 75 DAVIDKGTLDSLMCGTNAPISASQMLGEVSR-LLKPGGIYML 115 (210)
Q Consensus 75 D~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r-~LkpgG~~~~ 115 (210)
.+++..+. ..|...+.....+|+++++ .|+|||.+++
T Consensus 158 r~~~flGS----siGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 158 TTILWLGS----SIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred cEEEEeCc----cccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 67776542 2334477899999999999 9999999876
No 209
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.55 E-value=1e-07 Score=71.87 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=65.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------C-CC--CCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------F-FE--DESFD 75 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~-~~--~~~fD 75 (210)
...++||+||++|.++..+.++. ...|+|+|+.+. ...+++.++++|+.+.. . +. .+.||
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~d 93 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFD 93 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSES
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhccccccCcc
Confidence 45789999999999999999986 458999999875 11145556666654421 1 11 26899
Q ss_pred EEEECCccchhccC-C---CchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 76 AVIDKGTLDSLMCG-T---NAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~-~---~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+|++.......... . ....-....+.-+.+.|+|||.+++-.+..+.
T Consensus 94 lv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 94 LVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp EEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred eeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 99998732211000 0 01133444555666779999999887776544
No 210
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.54 E-value=4.4e-07 Score=75.74 Aligned_cols=56 Identities=9% Similarity=0.156 Sum_probs=48.7
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRD 65 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~ 65 (210)
.+|||++||+|.++..+++.. .+|+++|+++.+++.++++.. +..+++|+.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 469999999999999888764 489999999999999998874 33589999999876
No 211
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.54 E-value=2e-07 Score=77.83 Aligned_cols=98 Identities=10% Similarity=0.170 Sum_probs=77.8
Q ss_pred CCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.+|||+.||+|..+..++.. +..+|+++|+++.+++.++++.+.+ .++.+.+.|+...-....+.||+|.... +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 57999999999999999987 5678999999999999999988533 4688999998875312246799998632 2
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.....+++.+.+.+++||.++++.
T Consensus 124 ---------Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---------GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---------CCcHHHHHHHHHhcccCCEEEEEe
Confidence 223468888999999999998863
No 212
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.52 E-value=5.1e-07 Score=75.10 Aligned_cols=57 Identities=9% Similarity=0.178 Sum_probs=49.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDM 66 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~ 66 (210)
.+|||++||+|.++..+++.. .+|+++|+++.+++.|+++.. +..++.|+++|+.+.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 369999999999999888765 489999999999999999874 335799999998773
No 213
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.52 E-value=1e-06 Score=70.76 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=76.6
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcE---EEEcccCCCCCCCCCcccEEE
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLK---YLQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~---~~~~d~~~~~~~~~~~fD~Vi 78 (210)
|.-...+|||+|||+|.-+-.+.+. ...+++++|.|+.|++.++......++.. +......+. .+-...|+|+
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~DLvi 107 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF--LPFPPDDLVI 107 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc--ccCCCCcEEE
Confidence 4456678999999999876555443 34589999999999999988775443221 111111111 1112339999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhh
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 124 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~ 124 (210)
+.++|..+ +......+++++.+.+.+ .+++++.+.|...
T Consensus 108 ~s~~L~EL-----~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf 146 (274)
T PF09243_consen 108 ASYVLNEL-----PSAARAELVRSLWNKTAP--VLVLVEPGTPAGF 146 (274)
T ss_pred EehhhhcC-----CchHHHHHHHHHHHhccC--cEEEEcCCChHHH
Confidence 99999887 336677888888777765 9999998877743
No 214
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.49 E-value=3.2e-07 Score=70.00 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=67.4
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CC-CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...|+|+-||-|.++..+++. ..+.|+++|++|.+++.++++.+ +. .++...++|+.++. +.+.||.|+....-
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~--~~~~~drvim~lp~ 179 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL--PEGKFDRVIMNLPE 179 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE--TS
T ss_pred ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--CccccCEEEECChH
Confidence 457999999999999999984 34479999999999999998873 22 56889999999876 37899999986543
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
. ...++..+.+++|+||.+
T Consensus 180 ~-----------~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 180 S-----------SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp S-----------GGGGHHHHHHHEEEEEEE
T ss_pred H-----------HHHHHHHHHHHhcCCcEE
Confidence 2 235678889999999876
No 215
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.38 E-value=1.2e-06 Score=67.39 Aligned_cols=97 Identities=10% Similarity=0.148 Sum_probs=74.4
Q ss_pred CCCEEEeCCCCchhHHHHH-HcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCc-ccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMV-KDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDES-FDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~-fD~Vi~~~~l 83 (210)
..+++|||+|.|..+..++ -.+..+++.+|....-+.-.+.-.. +.+|++++++.+++.. .+.. ||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~--~~~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG--QEKKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc--cccccCcEEEeehc-
Confidence 4689999999999999987 3355579999988765555554443 3378999999999875 2223 999999754
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.....+..-+..++|+||.++..-
T Consensus 145 ----------a~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 145 ----------ASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred ----------cchHHHHHHHHHhcccCCcchhhh
Confidence 566778888999999999875543
No 216
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.37 E-value=5.2e-06 Score=75.01 Aligned_cols=108 Identities=12% Similarity=0.032 Sum_probs=74.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-------------------------------------------CCCcEEEEeCCHHHH
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-------------------------------------------GYEDIVNIDISSVAI 43 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-------------------------------------------~~~~v~~vD~s~~~~ 43 (210)
+...++|.+||+|.+..+.+.. ...+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 3467999999999999877641 012589999999999
Q ss_pred HHHHHhhcCC---CCcEEEEcccCCCCCCC--CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhc---cCCcEEEE
Q 028385 44 DMMKMKYEEI---PQLKYLQMDVRDMSFFE--DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLL---KPGGIYML 115 (210)
Q Consensus 44 ~~a~~~~~~~---~~v~~~~~d~~~~~~~~--~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~L---kpgG~~~~ 115 (210)
+.|+++.... ..+++.++|+.+++ .+ .++||+|+++..+..-. ....+...+..++.+.+ .+|+.+++
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~-~~~~~~~~d~IvtNPPYg~r~---~~~~~l~~lY~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLK-NPLPKGPTGLVISNPPYGERL---GEEPALIALYSQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhcc-cccccCCCCEEEECCCCcCcc---CchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 9999998533 45899999999876 33 35799999986643210 11233344444444444 48888877
Q ss_pred EEc
Q 028385 116 ITY 118 (210)
Q Consensus 116 ~~~ 118 (210)
++-
T Consensus 346 lt~ 348 (702)
T PRK11783 346 FSS 348 (702)
T ss_pred EeC
Confidence 663
No 217
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.36 E-value=4.8e-06 Score=63.94 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=78.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCC-C----CCCCCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDM-S----FFEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~-~----~~~~~~fD~ 76 (210)
+..+.||||.=||..+..++.. ...+|+++|+++...+.+.+..+. . ..++++++++.+. + ....++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 4468899999888888777765 344899999999999999776642 2 5789999988762 1 245789999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++. +| ...+......++.+++|+||++++-.
T Consensus 153 aFv----Da------dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFV----DA------DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEE----cc------chHHHHHHHHHHHhhcccccEEEEec
Confidence 985 33 34567799999999999999997643
No 218
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=5.2e-06 Score=63.16 Aligned_cols=101 Identities=22% Similarity=0.222 Sum_probs=73.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAV 77 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~V 77 (210)
+..+|+|+|+..|.|+..+++... ..|+++|+.|- +-.++|.++++|+..-+ .+....+|+|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV 115 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVV 115 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccCCCceEEeeeccCccHHHHHHHHcCCCCcceE
Confidence 346899999999999999988722 35999999763 22267999999998854 2445668999
Q ss_pred EECCcc--------chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 78 IDKGTL--------DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 78 i~~~~l--------~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++...= ||. ....-...++.-...+|+|||.|++-.+-.
T Consensus 116 ~sD~ap~~~g~~~~Dh~----r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 116 LSDMAPNTSGNRSVDHA----RSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred EecCCCCcCCCccccHH----HHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 985432 332 111334556777778999999998877653
No 219
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.27 E-value=4.1e-06 Score=66.22 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=71.6
Q ss_pred CCCCEEEeCCCC--chhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCC--cEEEEcccCCCC---------C-CC
Q 028385 7 GTRDTCRRAAPS--IVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQ--LKYLQMDVRDMS---------F-FE 70 (210)
Q Consensus 7 ~~~~vLdiGcG~--G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--v~~~~~d~~~~~---------~-~~ 70 (210)
|-...||||||- -.+..++++. +..+|+.+|++|..+..++......++ ..++++|+.+.. . +.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 344689999994 3455566664 667999999999999999999877777 899999998843 0 11
Q ss_pred CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 71 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
-..-=.|+...+|||+.. ..+...++..++..|.||+++.++..+.
T Consensus 148 ~~rPVavll~~vLh~v~D----~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPD----DDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp TTS--EEEECT-GGGS-C----GCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCCeeeeeeeeeccCCC----ccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 122236778899999822 2578899999999999999998887664
No 220
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.27 E-value=5.5e-06 Score=66.17 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=62.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCC---CcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED---ESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~---~~fD~Vi~~~~l 83 (210)
....|||+|+|+|.++..+++.+ .+++++|+++.+++..+++....++++++.+|+..+. ... +.-..|+++-..
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~-~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD-LYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC-GGGHCSSSEEEEEEEETG
T ss_pred CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccc-cHHhhcCCceEEEEEecc
Confidence 45679999999999999999988 5999999999999999998876689999999999876 333 355677776554
No 221
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.27 E-value=1.5e-05 Score=66.04 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=78.3
Q ss_pred CCEEEeCCCCchhHHHHHHcCC---------------------------------C-------cEEEEeCCHHHHHHHHH
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGY---------------------------------E-------DIVNIDISSVAIDMMKM 48 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~---------------------------------~-------~v~~vD~s~~~~~~a~~ 48 (210)
..++|--||+|.+.++.+..+. . .++|+|+++.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 4689999999999988876531 1 27799999999999999
Q ss_pred hhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchH-HHHHHHHHHHHhccCCcEEEEEEc
Q 028385 49 KYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPI-SASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 49 ~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~-~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+.... +-|+|.++|+.+++ -+-+.+|+||++....-=.-...... -+..+.+.+++.++--+.+++++.
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~-~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLK-EPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCC-CCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 88543 56899999999987 33379999999865432111111111 345566677788887778877753
No 222
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.25 E-value=5.5e-06 Score=67.92 Aligned_cols=101 Identities=23% Similarity=0.202 Sum_probs=82.8
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.-.|||+=||-|.++..+++.+...|+++|++|.+++.++++..- . ..+..+++|+.... ..-+.+|-|+....
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~-~~~~~aDrIim~~p-- 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA-PELGVADRIIMGLP-- 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh-hccccCCEEEeCCC--
Confidence 347999999999999999999875699999999999999998843 2 34889999999986 44488999997654
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
....+++....+.+++||.+...++..
T Consensus 266 ---------~~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 266 ---------KSAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred ---------CcchhhHHHHHHHhhcCcEEEEEeccc
Confidence 344567888888899999987777654
No 223
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.24 E-value=6.9e-06 Score=71.97 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=54.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC---------CCcEEEEeCCHHHHHHHHHhhcCCC--CcEEEEcccCCCC----CCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG---------YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMS----FFED 71 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~---------~~~v~~vD~s~~~~~~a~~~~~~~~--~v~~~~~d~~~~~----~~~~ 71 (210)
...+|||.+||+|.+...++... ..+++|+|+++.++..++.+..... .+.+.+.|..... .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 44689999999999998887641 1368999999999999998764432 3445555533211 0112
Q ss_pred CcccEEEECCccc
Q 028385 72 ESFDAVIDKGTLD 84 (210)
Q Consensus 72 ~~fD~Vi~~~~l~ 84 (210)
+.||+|+.+..+-
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999987654
No 224
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.23 E-value=6.6e-06 Score=61.64 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=77.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|+|+|..+...++.|...|+..|+.|...+..+-+.+.+ -++.+...|+.. .+..||+|+...++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC----CCcceeEEEeeceecC
Confidence 34689999999999999999998889999999988888777666543 456777777654 3568999999887754
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
- ....+++.-..++...|-.+++-+..++.
T Consensus 155 ~-------~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 155 H-------TEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred c-------hHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 4 66777788444444444455555555544
No 225
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.23 E-value=4e-06 Score=64.00 Aligned_cols=90 Identities=26% Similarity=0.329 Sum_probs=67.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC---CCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---EDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~Vi~~~~l~ 84 (210)
..++|||||=+..+... ..+.-+|+.||.++. .-.+.+.|+.+.| . +++.||+|.++.+|.
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~-------------~~~I~qqDFm~rp-lp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ-------------HPGILQQDFMERP-LPKNESEKFDVISLSLVLN 115 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCCC-------------CCCceeeccccCC-CCCCcccceeEEEEEEEEe
Confidence 47999999965443321 223446999998761 2345788888876 4 477999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcE-----EEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGI-----YMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~-----~~~~~ 117 (210)
.+.. ....-+++..+++.|+|+|. ++++.
T Consensus 116 fVP~----p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 116 FVPD----PKQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred eCCC----HHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 8833 36788999999999999999 76654
No 226
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=4.4e-06 Score=71.00 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=75.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCC--CCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSF--FEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~--~~~~~fD~Vi~~~ 81 (210)
.+..+|||+=||.|.++..+++... +|+|+|+++++++.|+++.+.+ .|++|+.++++.... .....+|.|+..
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD- 369 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD- 369 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC-
Confidence 4556899999999999999997654 8999999999999999998543 679999999999651 123578999953
Q ss_pred ccchhccCCCchHHHH-HHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISAS-QMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~-~~l~~i~r~LkpgG~~~~~~ 117 (210)
.++.... .+++.+.+ ++|-.++++..
T Consensus 370 ---------PPR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 370 ---------PPRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred ---------CCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence 2444455 55555554 47777776553
No 227
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.22 E-value=1.5e-06 Score=63.94 Aligned_cols=97 Identities=11% Similarity=0.124 Sum_probs=61.3
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC-CCCCCc-ccEEEECCccc
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FFEDES-FDAVIDKGTLD 84 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~-~~~~~~-fD~Vi~~~~l~ 84 (210)
.|+|+.||.|..+..+++... +|+++|+++..++.|+.+.+-. .+++|+++|+.+.. .+.... ||+|+.+...-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 489999999999999999854 8999999999999999987533 68999999998853 122222 89999875443
Q ss_pred hhccC------C---CchHHHHHHHHHHHHhc
Q 028385 85 SLMCG------T---NAPISASQMLGEVSRLL 107 (210)
Q Consensus 85 ~~~~~------~---~~~~~~~~~l~~i~r~L 107 (210)
-..+. . ...-+..++++...++-
T Consensus 81 Gp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t 112 (163)
T PF09445_consen 81 GPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT 112 (163)
T ss_dssp SGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-
T ss_pred CccccccCccCHHHccCCCCHHHHHHHHHhhC
Confidence 22111 0 11225666666666553
No 228
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.20 E-value=4e-06 Score=68.57 Aligned_cols=111 Identities=20% Similarity=0.222 Sum_probs=71.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--------CCCcEEEEeCCHHHHHHHHHhh--cCC--CCcEEEEcccCCCCCCC-CCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--------GYEDIVNIDISSVAIDMMKMKY--EEI--PQLKYLQMDVRDMSFFE-DES 73 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--------~~~~v~~vD~s~~~~~~a~~~~--~~~--~~v~~~~~d~~~~~~~~-~~~ 73 (210)
...+|+|.+||+|.+...+.+. ...+++|+|+++.++..|+.+. ... .+..+..+|....+... ...
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK 125 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 3447999999999998887662 4458999999999999988664 221 33467888876654233 578
Q ss_pred ccEEEECCccchhccCC--------------CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 74 FDAVIDKGTLDSLMCGT--------------NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~--------------~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
||+|+++..+-...+.. .....-..++..+.+.||+||++.++.
T Consensus 126 ~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 126 FDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 99999986654330100 011122347899999999999976655
No 229
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.19 E-value=2.4e-07 Score=69.87 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=70.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
+.++||+|+|.|..+..++..- .+|++.+.|..|..+.+++. .++. ...+.. .-+-+||+|.|.+.|+--
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk~-----ynVl--~~~ew~-~t~~k~dli~clNlLDRc- 182 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKKN-----YNVL--TEIEWL-QTDVKLDLILCLNLLDRC- 182 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhcC-----Ccee--eehhhh-hcCceeehHHHHHHHHhh-
Confidence 3689999999999999887753 47999999999999887753 1111 111111 223469999999988865
Q ss_pred cCCCchHHHHHHHHHHHHhccC-CcEEEE
Q 028385 88 CGTNAPISASQMLGEVSRLLKP-GGIYML 115 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~Lkp-gG~~~~ 115 (210)
-++-++++.++.+|.| +|++++
T Consensus 183 ------~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 183 ------FDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred ------cChHHHHHHHHHHhccCCCcEEE
Confidence 6788999999999999 888765
No 230
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.15 E-value=4.3e-05 Score=61.95 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=60.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC----CCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS----FFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~----~~~~~~fD~Vi~~~ 81 (210)
.+.++|.-+|.|.-+..+++. +..+|+|+|.++.+++.++++.... .++.+++++..++. ....+++|.|+...
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEEEEec
Confidence 357999999999999999886 3468999999999999999987544 57899999988753 12345788888754
Q ss_pred cc
Q 028385 82 TL 83 (210)
Q Consensus 82 ~l 83 (210)
.+
T Consensus 101 Gv 102 (305)
T TIGR00006 101 GV 102 (305)
T ss_pred cC
Confidence 33
No 231
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.12 E-value=6.9e-06 Score=61.19 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=74.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh--cCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY--EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+.|+|+|+|.++...++. ..+|++++.+|.....|.++. ....|+.++.+|+.+.. | ..-|+|+|-. ++-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-f--e~ADvvicEm-lDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-F--ENADVVICEM-LDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-c--cccceeHHHH-hhHH
Confidence 46799999999999877766 558999999999999999985 44578999999999987 6 5579998732 2211
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
+. .+....++..+...||.++.++
T Consensus 109 Li----~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 109 LI----EEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hh----cccccHHHHHHHHHhhcCCccc
Confidence 11 1345566777777888888774
No 232
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.09 E-value=1.2e-05 Score=61.71 Aligned_cols=100 Identities=18% Similarity=0.107 Sum_probs=62.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-----------CCCCcEEEEcccCCCCCCCC---
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-----------EIPQLKYLQMDVRDMSFFED--- 71 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-----------~~~~v~~~~~d~~~~~~~~~--- 71 (210)
.....+|||||.|......+.. +..+.+|||+.+...+.|+.... ...++++..+|+.+.+ +..
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~-~~~~~~ 120 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD-FVKDIW 120 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH-HHHHHG
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH-hHhhhh
Confidence 3456799999999998777654 66569999999998887765321 1246778888876643 111
Q ss_pred CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 72 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
..-|+|++++.... ++....+.+...-||+|.+++.
T Consensus 121 s~AdvVf~Nn~~F~--------~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 SDADVVFVNNTCFD--------PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HC-SEEEE--TTT---------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCCCEEEEeccccC--------HHHHHHHHHHHhcCCCCCEEEE
Confidence 23589999876422 5677777888889999988754
No 233
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=8.1e-05 Score=62.03 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=81.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcC---CCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCC-CCC-CcccEEE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDG---YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSF-FED-ESFDAVI 78 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~-~~~-~~fD~Vi 78 (210)
....+|||+.++.|.=+..+++.. ...|+++|.++.-++..+++.+.. .|+.....|....+. .+. ++||.|+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 344789999999998888888762 224799999999999999988644 567888888876541 222 3599999
Q ss_pred ECCccchhccC-C-------Cch-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 79 DKGTLDSLMCG-T-------NAP-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 79 ~~~~l~~~~~~-~-------~~~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..........- . ... .-+.++|....++|||||.++-.+++
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 75432221100 0 011 23668899999999999999888776
No 234
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.07 E-value=8.5e-05 Score=57.07 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=77.9
Q ss_pred EEEeCCCCchhHHHHHHcCCC-cEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCC-CCCCCCCcccEEEECCccch
Q 028385 11 TCRRAAPSIVMSEDMVKDGYE-DIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 11 vLdiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~ 85 (210)
|+||||-.|.+...+.+++.. .++++|+++.-++.|+++.... .++++..+|... ++ +.+..|.|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~--~~e~~d~ivIAGM--- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK--PGEDVDTIVIAGM--- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG----GGG---EEEEEEE---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC--CCCCCCEEEEecC---
Confidence 689999999999999998653 6999999999999999988533 579999999655 33 2333788876543
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 138 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~ 138 (210)
+-....+.+++....++....|++...........++. ..+|.+.
T Consensus 76 ------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~--~~gf~I~ 120 (205)
T PF04816_consen 76 ------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLY--ENGFEII 120 (205)
T ss_dssp -------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHH--HTTEEEE
T ss_pred ------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHH--HCCCEEE
Confidence 22567788888888887767787776655555555542 4456654
No 235
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.05 E-value=6.2e-05 Score=57.86 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=72.9
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC--CCCCcccEEEE
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVID 79 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~Vi~ 79 (210)
+.....+||-+|+.+|.....+..- + ...|++++.|+...+..-.-.+..+|+--+..|+..... .--+..|+|++
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence 3445568999999999999988875 3 457999999996544444333334889889999987431 22348999987
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.-. .+.+.+-++.+....||+||.+++.-
T Consensus 150 DVa---------Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 150 DVA---------QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp E-S---------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCC---------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 422 22567788899999999999998753
No 236
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.04 E-value=3.3e-05 Score=63.17 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=65.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
....++||+||++|.++..+.+.|. .|++||..+- .......++|.....|..... -+.+.+|.++|..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l-----~~~L~~~~~V~h~~~d~fr~~-p~~~~vDwvVcDmv--- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPM-----AQSLMDTGQVEHLRADGFKFR-PPRKNVDWLVCDMV--- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhc-----CHhhhCCCCEEEEeccCcccC-CCCCCCCEEEEecc---
Confidence 3456899999999999999999988 9999996652 222333478888888876654 23678999998644
Q ss_pred hccCCCchHHHHHHHHHHHHhccCC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPG 110 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~Lkpg 110 (210)
..+.++.+-+.++|..|
T Consensus 280 --------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 --------EKPARVAELMAQWLVNG 296 (357)
T ss_pred --------cCHHHHHHHHHHHHhcC
Confidence 45567777778888666
No 237
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.02 E-value=5e-05 Score=54.89 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=55.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHH-----cCCCcEEEEeCCHHHHHHHHHhhcCC-----CCcEEEEcccCCCCCCCCCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVK-----DGYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDESFD 75 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~-----~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~fD 75 (210)
.....|+|+|||.|.++..++. ....+|+++|.++..++.+.++.+.. .++.+..++..+.. .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES--SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc--ccCCCe
Confidence 4556899999999999999998 55558999999999999988876422 45666666655443 355677
Q ss_pred EEEEC
Q 028385 76 AVIDK 80 (210)
Q Consensus 76 ~Vi~~ 80 (210)
+++.-
T Consensus 102 ~~vgL 106 (141)
T PF13679_consen 102 ILVGL 106 (141)
T ss_pred EEEEe
Confidence 77763
No 238
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.00 E-value=1.6e-05 Score=66.25 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=44.2
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCC
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDM 66 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~ 66 (210)
+|||+-||.|.++..+++... +|+|+|+++.+++.|+++.+ +..|++|+.+++.+.
T Consensus 199 ~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 799999999999999988755 89999999999999999884 447899998877653
No 239
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.96 E-value=9.1e-05 Score=59.20 Aligned_cols=102 Identities=14% Similarity=0.281 Sum_probs=65.7
Q ss_pred CCEEEeCCCCchhHHHHHH-c-C-CCcEEEEeCCHHHHHHHHHhhcC----CCCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 9 RDTCRRAAPSIVMSEDMVK-D-G-YEDIVNIDISSVAIDMMKMKYEE----IPQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~-~-~-~~~v~~vD~s~~~~~~a~~~~~~----~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
.+|+=||||.=-++..+.. . + ...++++|+++.+++.+++-.+. ..++.|+++|..+.. ..-..||+|+...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~-~dl~~~DvV~lAa 200 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT-YDLKEYDVVFLAA 200 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE-T
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc-cccccCCEEEEhh
Confidence 4899999998766655544 2 2 34799999999999999887652 167999999998765 4446899998755
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.... ..++..+++.++.+.++||..+++-+
T Consensus 201 lVg~------~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGM------DAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S----------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hccc------ccchHHHHHHHHHhhCCCCcEEEEec
Confidence 4321 23578999999999999999998775
No 240
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.93 E-value=0.00014 Score=59.72 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=78.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhh-----cC----CCCcEEEEcccCCCCCCCCCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKY-----EE----IPQLKYLQMDVRDMSFFEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~-----~~----~~~v~~~~~d~~~~~~~~~~~fD~ 76 (210)
+-.+||-+|.|.|.-.+++.+.+ ..+++-+|.+|.|++.++++. ++ .++++++..|+-++-.-..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 34579999999999999999986 679999999999999998432 11 178999999988742123568999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
||.... + -......+--..++..-+.|.|+++|.+++. -+.|.
T Consensus 369 vIVDl~-D-P~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ-ags~y 411 (508)
T COG4262 369 VIVDLP-D-PSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ-AGSPY 411 (508)
T ss_pred EEEeCC-C-CCCcchhhhhhHHHHHHHHHhcCcCceEEEe-cCCCc
Confidence 986321 0 0000011122345677788999999999654 34443
No 241
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.92 E-value=4.7e-06 Score=57.09 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=44.4
Q ss_pred EEeCCCCchhHHHHHHc----CCCcEEEEeCCHH---HHHHHHHhhcCCCCcEEEEcccCCC-CCCCCCcccEEEECCcc
Q 028385 12 CRRAAPSIVMSEDMVKD----GYEDIVNIDISSV---AIDMMKMKYEEIPQLKYLQMDVRDM-SFFEDESFDAVIDKGTL 83 (210)
Q Consensus 12 LdiGcG~G~~~~~l~~~----~~~~v~~vD~s~~---~~~~a~~~~~~~~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l 83 (210)
||+|+..|..+..+++. +..+++++|..+. .-+..++ ..-..+++++.++..+. +.++.++||+|+..+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 69999999888887764 2237999999994 3333332 11115799999998763 22445789999965431
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..+.....+..+.+.|+|||.+++-+
T Consensus 80 --------~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 --------SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --------CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 12677888999999999999987654
No 242
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.00017 Score=56.81 Aligned_cols=93 Identities=14% Similarity=0.122 Sum_probs=75.3
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCC--CCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFE--DESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~--~~~fD~Vi~~ 80 (210)
..+|||-|+|+|.++..+++. +..+++.+|+.+.-.+.|++.++.. .++++..-|+...- |. +..+|.|+..
T Consensus 106 GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G-F~~ks~~aDaVFLD 184 (314)
T KOG2915|consen 106 GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG-FLIKSLKADAVFLD 184 (314)
T ss_pred CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC-ccccccccceEEEc
Confidence 457999999999999999986 5568999999999888888877532 68999999998854 44 5679999853
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
+ +.+..++-.++++||.+|.-
T Consensus 185 -----l-------PaPw~AiPha~~~lk~~g~r 205 (314)
T KOG2915|consen 185 -----L-------PAPWEAIPHAAKILKDEGGR 205 (314)
T ss_pred -----C-------CChhhhhhhhHHHhhhcCce
Confidence 3 66777888888899988853
No 243
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.82 E-value=6.5e-05 Score=54.11 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=47.0
Q ss_pred CEEEeCCCCchhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCC
Q 028385 10 DTCRRAAPSIVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDM 66 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~ 66 (210)
.+||+|||.|.++..+++.+. .+++++|.++.+.+.++++.+. .+++.+++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 389999999999999988744 3799999999999999988753 35688888777653
No 244
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=3.3e-05 Score=56.23 Aligned_cols=108 Identities=12% Similarity=0.074 Sum_probs=73.4
Q ss_pred CCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC-----CCcEEEEcccCCCC-CCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMS-FFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~-~~~~~~fD~Vi~~ 80 (210)
.+|||+|.|--.++..|... +...|...|-++..++..++..... ..+.....+...-. ....++||+|++.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 47899999965555545433 4558999999999999887765321 22222222222211 1346699999998
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 123 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~ 123 (210)
.++..- +-...+.+.|+++|+|.|..++.+..+...
T Consensus 111 DClFfd-------E~h~sLvdtIk~lL~p~g~Al~fsPRRg~s 146 (201)
T KOG3201|consen 111 DCLFFD-------EHHESLVDTIKSLLRPSGRALLFSPRRGQS 146 (201)
T ss_pred cchhHH-------HHHHHHHHHHHHHhCcccceeEecCcccch
Confidence 887544 778889999999999999987766444433
No 245
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00039 Score=52.59 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=78.9
Q ss_pred CCCCCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC--CCCCcccEEEE
Q 028385 3 TPSTGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVID 79 (210)
Q Consensus 3 ~~~~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~Vi~ 79 (210)
.|..+..+||-+|+.+|.....+..- +...++++++|+.+....-...++.+|+--+..|+..... +--+..|+|+.
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE
Confidence 35566779999999999999998886 4457999999998877666666666899899999876331 22345888875
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.-. .+.+.+-+..++...||+||.+++.
T Consensus 152 DVA---------Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 152 DVA---------QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ecC---------CchHHHHHHHHHHHhcccCCeEEEE
Confidence 311 2356677788999999999977663
No 246
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.79 E-value=8.2e-05 Score=59.73 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=67.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cC---------------------------CCCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EE---------------------------IPQL 56 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~---~~---------------------------~~~v 56 (210)
...+||--|||.|.++..++..|. .+-|=+.|--|+-...=.. +. .|.+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 446799999999999999998877 5666677766643322111 00 0111
Q ss_pred ------------EEEEcccCCCC--CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 57 ------------KYLQMDVRDMS--FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 57 ------------~~~~~d~~~~~--~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
..-.+|+...- .-..++||+|+..+.++-. .+....++.|.++|||||+++=
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa-------~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA-------HNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech-------HHHHHHHHHHHHhccCCcEEEe
Confidence 11123333211 0123479999998888876 9999999999999999999965
No 247
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.0002 Score=55.57 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=70.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCc-EEEEcccCCCC--CCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQL-KYLQMDVRDMS--FFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v-~~~~~d~~~~~--~~~~~~fD~Vi~~~~l 83 (210)
++..+||+|+-||.++.-++++|.++|+++|.....+..--+.- +++ .+...|+..+. .+. +..|++++.-.+
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d---~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSF 154 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND---PRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSF 154 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC---CcEEEEecCChhhCCHHHcc-cCCCeEEEEeeh
Confidence 34578999999999999999999999999999876655433322 443 45556666653 122 267888876544
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
-....++..+..+++++|.++..
T Consensus 155 ----------ISL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 155 ----------ISLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred ----------hhHHHHHHHHHHhcCCCceEEEE
Confidence 45688899999999999988664
No 248
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.70 E-value=0.00097 Score=53.55 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=56.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC----CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS----FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~----~~~~~~fD~Vi~ 79 (210)
.+..+|.--|.|..+..+++.. ...++++|.++.+++.|+++.... +++.++..++.++. ....+.+|-|+.
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL~ 102 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVDGILL 102 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCceeEEEE
Confidence 3678999999999999999873 357999999999999999998654 68999999887753 133446666665
No 249
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.69 E-value=0.00014 Score=58.72 Aligned_cols=114 Identities=19% Similarity=0.235 Sum_probs=81.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCC-CCCCCcccEEEEC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMS-FFEDESFDAVIDK 80 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~-~~~~~~fD~Vi~~ 80 (210)
....+|||+.++.|.=+..+++. +...+++.|+++.-+...+++.+.. .++.....|..... ......||.|+..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 34457999999999998888876 3458999999999999998887543 67777778877752 1234469999975
Q ss_pred Cccchhcc-CCCc--------------hHHHHHHHHHHHHhc----cCCcEEEEEEcC
Q 028385 81 GTLDSLMC-GTNA--------------PISASQMLGEVSRLL----KPGGIYMLITYG 119 (210)
Q Consensus 81 ~~l~~~~~-~~~~--------------~~~~~~~l~~i~r~L----kpgG~~~~~~~~ 119 (210)
..-..... ...+ ..-..++|++..+.+ ||||+++-.+++
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 33222110 0111 123567899999999 999999888875
No 250
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.63 E-value=5.7e-05 Score=57.71 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC---CCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS---FFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~ 81 (210)
...|+|.-||.|..+..++..+. .|+++|++|.-+..|+.+.+-. .+++|+++|+.++- .+....+|+|+.+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 45689999999998888888765 7999999999999999988533 58999999998842 25555677887655
Q ss_pred cc
Q 028385 82 TL 83 (210)
Q Consensus 82 ~l 83 (210)
..
T Consensus 174 pw 175 (263)
T KOG2730|consen 174 PW 175 (263)
T ss_pred CC
Confidence 43
No 251
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.63 E-value=0.00029 Score=50.47 Aligned_cols=86 Identities=24% Similarity=0.351 Sum_probs=58.7
Q ss_pred cEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCC-CcccEEEECCccchhccCCC----chHHHHHHHHHH
Q 028385 32 DIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFED-ESFDAVIDKGTLDSLMCGTN----APISASQMLGEV 103 (210)
Q Consensus 32 ~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~-~~fD~Vi~~~~l~~~~~~~~----~~~~~~~~l~~i 103 (210)
+|+++|+-+.+++..+++.++. .+++++..+=+++..+-+ +++|+++.+.. +++-++. ..+.-..+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999998543 579999887777653333 48999987643 3433331 224566789999
Q ss_pred HHhccCCcEEEEEEcC
Q 028385 104 SRLLKPGGIYMLITYG 119 (210)
Q Consensus 104 ~r~LkpgG~~~~~~~~ 119 (210)
.++|+|||.+.++.|.
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999999999886
No 252
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.58 E-value=0.00035 Score=56.71 Aligned_cols=74 Identities=8% Similarity=0.097 Sum_probs=55.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC----CC-CCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS----FF-EDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~----~~-~~~~fD~Vi~ 79 (210)
..+..+|.--|.|.-+..+++. +...++|+|.++.+++.++++.... +++.++.+++.++. .. ....+|.|+.
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTTS-EEEEEE
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCCCccCEEEE
Confidence 3457899999999999999986 4479999999999999999988654 78999999998864 13 3457888877
Q ss_pred C
Q 028385 80 K 80 (210)
Q Consensus 80 ~ 80 (210)
.
T Consensus 100 D 100 (310)
T PF01795_consen 100 D 100 (310)
T ss_dssp E
T ss_pred c
Confidence 4
No 253
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.50 E-value=0.00052 Score=58.63 Aligned_cols=119 Identities=15% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCC--HHHHHHHHHhhcCCCCcEEEEccc-CCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDIS--SVAIDMMKMKYEEIPQLKYLQMDV-RDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..|+|+.+|.|.++..|.+.+. .|..+=.+ ++.+...-.+ +. +- ...|. +.++ .-..+||+|.+.+.+..
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~V-WVMNVVP~~~~ntL~vIydR--GL--IG-~yhDWCE~fs-TYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPV-WVMNVVPVSGPNTLPVIYDR--GL--IG-VYHDWCEAFS-TYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeecccccHHHHHhccCCc-eEEEecccCCCCcchhhhhc--cc--ch-hccchhhccC-CCCcchhheehhhhhhh
Confidence 4689999999999999987654 23222211 1111111111 00 11 11122 2244 34679999999888765
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 139 (210)
. ..+-+...++-|+-|+|+|||.+++-+...-....+.+ .....|....
T Consensus 440 ~----~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i-~~~lrW~~~~ 488 (506)
T PF03141_consen 440 Y----KDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKI-AKSLRWEVRI 488 (506)
T ss_pred h----cccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHH-HHhCcceEEE
Confidence 4 23356889999999999999999987754433333333 4567788753
No 254
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=3.7e-05 Score=55.50 Aligned_cols=46 Identities=33% Similarity=0.503 Sum_probs=41.1
Q ss_pred CCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 66 MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 66 ~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+ |.+++.|+|++.++++|+ ....-..++++++|.|||||++-+.-
T Consensus 41 ~~-F~dns~d~iyaeHvlEHl-----t~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 41 SM-FEDNSVDAIYAEHVLEHL-----TYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred cc-CCCcchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 45 999999999999999999 55788899999999999999997753
No 255
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.00096 Score=50.22 Aligned_cols=108 Identities=10% Similarity=0.111 Sum_probs=63.9
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHH----------HHHHHHhhcCCCCcEEEEcccCCCCCCCCCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVA----------IDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFD 75 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~----------~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD 75 (210)
...|+|+=.|.|.+++-+... +...|++.-..+.. -..+++. ...|++.+-.+...+. +.+..|
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~--~~aN~e~~~~~~~A~~--~pq~~d 124 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP--VYANVEVIGKPLVALG--APQKLD 124 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh--hhhhhhhhCCcccccC--CCCccc
Confidence 457999999999999988765 22356665443331 1111111 1134444444444332 334455
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++......|-+-+-........++..++++.|||||.+++.++.
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 55543333322122223367889999999999999999999875
No 256
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00047 Score=56.38 Aligned_cols=119 Identities=13% Similarity=0.062 Sum_probs=73.1
Q ss_pred CCCCCCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC------CCcEEEEcccCCCCCCCCCcc
Q 028385 3 TPSTGTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI------PQLKYLQMDVRDMSFFEDESF 74 (210)
Q Consensus 3 ~~~~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~------~~v~~~~~d~~~~~~~~~~~f 74 (210)
.|....-+|||+|.|.|.-.-.+... + ..+++.++.|+..-+.......+. .+..-++.|-..++ ..+.|
T Consensus 109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp--~ad~y 186 (484)
T COG5459 109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP--AADLY 186 (484)
T ss_pred CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC--cccee
Confidence 35556678999999998876555443 1 236778888876544443332211 11122233333343 34567
Q ss_pred cEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhh
Q 028385 75 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 127 (210)
Q Consensus 75 D~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~ 127 (210)
++|+...-|-+. .....+...++.+..++.|||.+++++-+.|..+...
T Consensus 187 tl~i~~~eLl~d----~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I 235 (484)
T COG5459 187 TLAIVLDELLPD----GNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERI 235 (484)
T ss_pred ehhhhhhhhccc----cCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHH
Confidence 777764433332 2334566699999999999999999999888754433
No 257
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.40 E-value=0.002 Score=53.89 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=81.6
Q ss_pred CCCCCCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCC--CCCCCccc
Q 028385 2 ATPSTGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMS--FFEDESFD 75 (210)
Q Consensus 2 ~~~~~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~--~~~~~~fD 75 (210)
+..+....||||+.+..|.=+..++.. ....|++-|.+..-+...+++.... .+..+...|...+| .++. +||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccc
Confidence 445566679999999988776666653 4457999999999998888877433 56667777777654 2444 899
Q ss_pred EEEECCccchhccCC--------C-------chHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 76 AVIDKGTLDSLMCGT--------N-------APISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~--------~-------~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
-|+..........+. . -..-..++|.....++++||+++-.+++
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 999654432211111 1 1123567889999999999999887765
No 258
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.37 E-value=0.0018 Score=48.53 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=65.3
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc-ccCCCC-------CCCCCcccEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DVRDMS-------FFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~-d~~~~~-------~~~~~~fD~V 77 (210)
..+|||+||..|.|+.-..+. +..-|.|+|+-. ....+.++++++ |+.+.. .+++...|+|
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvV 140 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVV 140 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHHHHHHHhCCCCcccEE
Confidence 568999999999999877765 556799999743 222245566666 666632 3678889999
Q ss_pred EECCccchhccCCCch------HHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 78 IDKGTLDSLMCGTNAP------ISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~------~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++...-. .+|.+-. +--..++.-....++|+|.|++-.+..
T Consensus 141 lSDMapn--aTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 141 LSDMAPN--ATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred EeccCCC--CcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 9853321 1222111 112233444455678999999877763
No 259
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.34 E-value=0.00073 Score=54.62 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=43.6
Q ss_pred CCCEEEeCCCCchhHHHH-HHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCcEEEEcccCC--CC--CCCCCcccEEE
Q 028385 8 TRDTCRRAAPSIVMSEDM-VKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRD--MS--FFEDESFDAVI 78 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l-~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~--~~--~~~~~~fD~Vi 78 (210)
..++||||+|..-.--.+ ++....+++|+|+++..++.|+++.+.. .+|+++...-.. +. ...++.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 457899999987554333 3332348999999999999999988433 457766543221 11 13356899999
Q ss_pred ECCccchh
Q 028385 79 DKGTLDSL 86 (210)
Q Consensus 79 ~~~~l~~~ 86 (210)
|+..++.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 99888753
No 260
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.32 E-value=0.00061 Score=51.58 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=65.9
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC---------CCCcEEEEcccCCC-CC-CCCC
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE---------IPQLKYLQMDVRDM-SF-FEDE 72 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~---------~~~v~~~~~d~~~~-~~-~~~~ 72 (210)
.++...+.|||||.|.+...++.. +..-+.|.+|--...+..++++.. .+|+.+...++... |. |..+
T Consensus 58 ~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kg 137 (249)
T KOG3115|consen 58 LNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKG 137 (249)
T ss_pred ccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhc
Confidence 345567899999999999988876 555688888877777777666521 25666676665542 21 1111
Q ss_pred cccE-EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 73 SFDA-VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 73 ~fD~-Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..+- .+++..=|.-.--...+---..++.+..=+|++||.++.++
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 1111 11110000000000111123467888899999999998876
No 261
>PRK10742 putative methyltransferase; Provisional
Probab=97.29 E-value=0.00096 Score=52.43 Aligned_cols=75 Identities=8% Similarity=-0.023 Sum_probs=58.7
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC----------C-CCcEEEEcccCCCCCCCCCcccEEE
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE----------I-PQLKYLQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----------~-~~v~~~~~d~~~~~~~~~~~fD~Vi 78 (210)
+|||+-+|+|..+..++..|. +|+++|.++.+....+..... . .+++++.+|..+.-.-...+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 799999999999999999987 599999999988877766532 1 3578888888774211234799999
Q ss_pred ECCccch
Q 028385 79 DKGTLDS 85 (210)
Q Consensus 79 ~~~~l~~ 85 (210)
...++.|
T Consensus 170 lDPMfp~ 176 (250)
T PRK10742 170 LDPMFPH 176 (250)
T ss_pred ECCCCCC
Confidence 8777655
No 262
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.0024 Score=52.66 Aligned_cols=46 Identities=11% Similarity=-0.014 Sum_probs=38.0
Q ss_pred CCCEEEeCCCCchhHHHHHHc---------CCCcEEEEeCCHHHHHHHHHhhcCC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD---------GYEDIVNIDISSVAIDMMKMKYEEI 53 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~ 53 (210)
...++|+|+|+|.++..+++. ...++..++.|++..+.-++..+..
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 457999999999999999764 2457999999999998888877543
No 263
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.27 E-value=0.007 Score=46.54 Aligned_cols=117 Identities=11% Similarity=0.036 Sum_probs=80.2
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
++.||||-.+.+...+.+. ....+++.|+++..++.|.++.++. +++++..+|....- -.++.+|+|+..++
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l-~~~d~~d~ivIAGM--- 94 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL-ELEDEIDVIVIAGM--- 94 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc-CccCCcCEEEEeCC---
Confidence 4999999999999999987 4457999999999999999988654 56777777774322 34558998886543
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 138 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~ 138 (210)
+-.-....+++-.+-|+.=-++++.--..+....+++ ...+|.+.
T Consensus 95 ------GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L--~~~~~~I~ 139 (226)
T COG2384 95 ------GGTLIREILEEGKEKLKGVERLILQPNIHTYELREWL--SANSYEIK 139 (226)
T ss_pred ------cHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHH--HhCCceee
Confidence 2245677777777777644455544333444444444 24455554
No 264
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.19 E-value=0.0026 Score=53.35 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=40.8
Q ss_pred CCCCcccEEEECCccchhccCC-------------------------------CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 69 FEDESFDAVIDKGTLDSLMCGT-------------------------------NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~-------------------------------~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
||.++.++++++.++||+.-.. ....|...+|+.-.+-|+|||+++++.
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 8899999999999999984110 011256667777888899999999888
Q ss_pred cCCc
Q 028385 118 YGDP 121 (210)
Q Consensus 118 ~~~p 121 (210)
.+++
T Consensus 238 ~Gr~ 241 (386)
T PLN02668 238 LGRT 241 (386)
T ss_pred ecCC
Confidence 7764
No 265
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.16 E-value=0.0017 Score=53.75 Aligned_cols=118 Identities=14% Similarity=0.019 Sum_probs=67.1
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHc------------C-----CCcEEEEeCCHHHHHHHHHh-------hcCCCCc--E
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKD------------G-----YEDIVNIDISSVAIDMMKMK-------YEEIPQL--K 57 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~------------~-----~~~v~~vD~s~~~~~~a~~~-------~~~~~~v--~ 57 (210)
...+..+|+|+||.+|..+..+... + .-+|+.-|.-.+--...=+. ....+++ .
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 4556678999999999999877542 1 01577777543222111111 1111232 2
Q ss_pred EEEcccCCCCCCCCCcccEEEECCccchhcc---CCC-----------------------------chHHHHHHHHHHHH
Q 028385 58 YLQMDVRDMSFFEDESFDAVIDKGTLDSLMC---GTN-----------------------------APISASQMLGEVSR 105 (210)
Q Consensus 58 ~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~---~~~-----------------------------~~~~~~~~l~~i~r 105 (210)
-+.+.+-+-- ||+++.|+++++.++||+.- +.. ...+....|+.=.+
T Consensus 93 gvpgSFy~rL-fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334)
T PF03492_consen 93 GVPGSFYGRL-FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334)
T ss_dssp EEES-TTS---S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhcc-CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2334444433 89999999999999999842 110 11366677888888
Q ss_pred hccCCcEEEEEEcCCch
Q 028385 106 LLKPGGIYMLITYGDPK 122 (210)
Q Consensus 106 ~LkpgG~~~~~~~~~p~ 122 (210)
-|+|||+++++..+++.
T Consensus 172 ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 172 ELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HEEEEEEEEEEEEE-ST
T ss_pred eeccCcEEEEEEeeccc
Confidence 99999999998877655
No 266
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.11 E-value=0.0039 Score=49.10 Aligned_cols=102 Identities=11% Similarity=0.040 Sum_probs=67.3
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh------cCC-CCcEEEEcccCCCC--CCCCCc-ccEEE
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY------EEI-PQLKYLQMDVRDMS--FFEDES-FDAVI 78 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~------~~~-~~v~~~~~d~~~~~--~~~~~~-fD~Vi 78 (210)
.+|||+|+|+|..+..++.....+|+..|....+......+. .+. ..+.+...+..+.+ .+.... ||+|+
T Consensus 88 ~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dlil 167 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLIL 167 (248)
T ss_pred eeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEE
Confidence 469999999998888888865558988887654433332211 111 14555555544422 122223 99999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+..++.+. +....++.-+...|-.+|.+++..
T Consensus 168 asDvvy~~-------~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 168 ASDVVYEE-------ESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EeeeeecC-------CcchhHHHHHHHHHhcCCeEEEEE
Confidence 99998876 677778888888888888554443
No 267
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.10 E-value=0.0017 Score=51.01 Aligned_cols=77 Identities=12% Similarity=0.030 Sum_probs=57.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|+|||||.=-++..+... +...++|+|++..+++...+..... .+.++...|...-+ +....|+.+..=+++.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~--~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP--PKEPADLALLLKTLPC 183 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH--TTSEESEEEEET-HHH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC--CCCCcchhhHHHHHHH
Confidence 568999999998888776654 3348999999999999988776433 56778888887754 6778999999888877
Q ss_pred h
Q 028385 86 L 86 (210)
Q Consensus 86 ~ 86 (210)
+
T Consensus 184 l 184 (251)
T PF07091_consen 184 L 184 (251)
T ss_dssp H
T ss_pred H
Confidence 6
No 268
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.00054 Score=58.56 Aligned_cols=56 Identities=9% Similarity=0.194 Sum_probs=48.0
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRD 65 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~ 65 (210)
.-+||+-||||.++..+++. ...|+|++++++++.-|+.+.. +..|.+|+++-+++
T Consensus 385 k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred cEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 45899999999999988875 4589999999999999998874 34789999996666
No 269
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.95 E-value=0.013 Score=47.22 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=58.0
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCC-CCcccEEEECCccchh
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-DESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Vi~~~~l~~~ 86 (210)
++++|+-||.|.++..+.+.|...+.++|+++.+++..+.+... . +.++|+.++.... ...+|+++.......+
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---K-LIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---C-CccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 47999999999999989888887799999999999998888743 2 5678888865111 3579999987665433
No 270
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.89 E-value=0.0047 Score=47.23 Aligned_cols=102 Identities=14% Similarity=0.038 Sum_probs=53.9
Q ss_pred CCCEEEeCCCCchhHHHHHHc-----CCCcEEEEeCCHHHHHHH-HHhhcCCCCcEEEEcccCCCC------CC-CCCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-----GYEDIVNIDISSVAIDMM-KMKYEEIPQLKYLQMDVRDMS------FF-EDESF 74 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-----~~~~v~~vD~s~~~~~~a-~~~~~~~~~v~~~~~d~~~~~------~~-~~~~f 74 (210)
+..|+|+|.-.|..+..++.. +.++|+|+|++....... .+...-.++++++++|..+.. .. .....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 456999999888777666542 445899999965443322 121122378999999988753 01 12334
Q ss_pred cEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+|+....-.| ....+.|+....++++|+++++-+
T Consensus 113 vlVilDs~H~~--------~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVILDSSHTH--------EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEESS------------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEECCCccH--------HHHHHHHHHhCccCCCCCEEEEEe
Confidence 46665332111 456777888999999999997654
No 271
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.87 E-value=0.0029 Score=53.15 Aligned_cols=100 Identities=23% Similarity=0.335 Sum_probs=72.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhc--CC-C-CcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYE--EI-P-QLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~--~~-~-~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
+..+|||.=+|+|.-+..++.. +..+|+.-|+|+++++..+++.+ +. . .+.+.+.|+..+-....+.||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl- 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL- 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe-
Confidence 3468999999999999988876 45689999999999999999863 33 2 4788888887742025788999863
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+.+ ..+..+++...+.+|.||.+.++.
T Consensus 128 ---DPf-------GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 ---DPF-------GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----S-------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCC-------CCccHhHHHHHHHhhcCCEEEEec
Confidence 322 566778999999999999998765
No 272
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.79 E-value=0.0011 Score=52.86 Aligned_cols=102 Identities=16% Similarity=0.172 Sum_probs=64.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh-------c--CCCC---cEEEEcccCCCCCCCCC--c
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY-------E--EIPQ---LKYLQMDVRDMSFFEDE--S 73 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-------~--~~~~---v~~~~~d~~~~~~~~~~--~ 73 (210)
..+|||+|||.|.........+...+...|++.+.++...--. . ...+ ......+..+......+ .
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~~ 196 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERTH 196 (282)
T ss_pred CceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccccc
Confidence 3589999999999999988888678999999988874222110 0 0011 11112211111101122 7
Q ss_pred ccEEEECCccchhccCCCchHHHHHH-HHHHHHhccCCcEEEEE
Q 028385 74 FDAVIDKGTLDSLMCGTNAPISASQM-LGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~~~~~~~~~~-l~~i~r~LkpgG~~~~~ 116 (210)
||+|.++.++... ...+.+ ......+++++|+++..
T Consensus 197 ydlIlsSetiy~~-------~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 197 YDLILSSETIYSI-------DSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred hhhhhhhhhhhCc-------chhhhhHhhhhhhcCCccchhhhh
Confidence 8999888887765 555555 67777888999988765
No 273
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.013 Score=42.37 Aligned_cols=107 Identities=7% Similarity=0.106 Sum_probs=75.0
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh--cCC-CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY--EEI-PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~--~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....++.+|+|+|.|......++++....+|++.++-.+..++-+. ... ....|..-|+.... +.+ |..|+.++
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d-l~d--y~~vviFg 146 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD-LRD--YRNVVIFG 146 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc-ccc--cceEEEee
Confidence 3445789999999999999999988668999999998887776544 111 56788888887765 444 44454433
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhh
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 124 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~ 124 (210)
.- .-...+-..+..-|..+..++.+-|.-|.+.
T Consensus 147 ae----------s~m~dLe~KL~~E~p~nt~vvacRFPLP~w~ 179 (199)
T KOG4058|consen 147 AE----------SVMPDLEDKLRTELPANTRVVACRFPLPTWQ 179 (199)
T ss_pred hH----------HHHhhhHHHHHhhCcCCCeEEEEecCCCccc
Confidence 21 2334455566667788888888877766643
No 274
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.74 E-value=0.0025 Score=53.64 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=47.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRD 65 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~ 65 (210)
+..-|||||+|||.++...++.+...|++++.-..|.+.|++...+. ++++++.---.+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 34458999999999999888888888999999999999999877443 566666544333
No 275
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.48 E-value=0.0084 Score=48.10 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=76.5
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC------CCcEEEEcccCCC-CCCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI------PQLKYLQMDVRDM-SFFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------~~v~~~~~d~~~~-~~~~~~~fD~Vi~~ 80 (210)
.+||=||-|.|...+..+++ ...++..+|++...++..++..+.. +++....+|...+ .....++||+|+.-
T Consensus 123 kkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~d 202 (337)
T KOG1562|consen 123 KKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITD 202 (337)
T ss_pred CeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEe
Confidence 57999999999999988887 3457999999999999998876422 6889999987663 22457899999852
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. +-+ +.--..=.+..+.-+.+.||+||++++..
T Consensus 203 ss-dpv--gpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 203 SS-DPV--GPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred cC-Ccc--chHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 11 000 00000124566888999999999997754
No 276
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.47 E-value=0.044 Score=44.68 Aligned_cols=107 Identities=12% Similarity=0.147 Sum_probs=70.1
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEE--EcccCC-CC-CCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYL--QMDVRD-MS-FFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~--~~d~~~-~~-~~~~~~fD~Vi~~ 80 (210)
..+||=+|+|. |.++...++. |..+|+.+|.++..++.|++--... .+..-. ..++.+ .. .+....+|+.+..
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dC 249 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDC 249 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEc
Confidence 35799999997 7777777775 7789999999999999999832211 111000 011111 00 1344569999875
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhh
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 127 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~ 127 (210)
..+ +..++.....++.||.+++..++.+....+.
T Consensus 250 sG~-------------~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi 283 (354)
T KOG0024|consen 250 SGA-------------EVTIRAAIKATRSGGTVVLVGMGAEEIQFPI 283 (354)
T ss_pred cCc-------------hHHHHHHHHHhccCCEEEEeccCCCccccCh
Confidence 443 4456667888999999988888776544333
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.42 E-value=0.014 Score=48.16 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=63.3
Q ss_pred CCEEEeCCC-CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc-cCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAP-SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-VRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d-~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.+|+=+|+| .|..+..+++. + .+|+++|.+++-.+.|++.-.+ .++... ....+ --.+.||+|+..-.
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd----~~i~~~~~~~~~-~~~~~~d~ii~tv~--- 238 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD----HVINSSDSDALE-AVKEIADAIIDTVG--- 238 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc----EEEEcCCchhhH-HhHhhCcEEEECCC---
Confidence 356666765 56777888884 6 5999999999999999876432 334432 22222 11234999997543
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...+....+.|++||.++++-..
T Consensus 239 -----------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -----------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----------hhhHHHHHHHHhcCCEEEEECCC
Confidence 44578888999999999888655
No 278
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.011 Score=45.82 Aligned_cols=102 Identities=25% Similarity=0.343 Sum_probs=69.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--------CC--CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--------GY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FF 69 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--------~~--~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~ 69 (210)
+-.|++|+.+..|.|+.-+.+. +. ..++++|+.+- .-.+.|.-+++|+.+.. .|
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M---------aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM---------APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC---------CccCceEEeecccCCHhHHHHHHHHh
Confidence 3457899999999999888764 11 13999997542 22367888999998853 47
Q ss_pred CCCcccEEEECCccchhccCCCc------hHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 70 EDESFDAVIDKGTLDSLMCGTNA------PISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 70 ~~~~fD~Vi~~~~l~~~~~~~~~------~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..++-|+|+|.+.=+-. |... -+-+..+|.-...+|||||.|+.--|.
T Consensus 112 ggekAdlVvcDGAPDvT--GlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVT--GLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred CCCCccEEEeCCCCCcc--ccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 77899999997653321 1111 123445677778899999999764443
No 279
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.38 E-value=0.002 Score=47.04 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=61.4
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHH-HHHhhcCCCCcEEEEcccCC-CCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDM-MKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~-a~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+.+-+|+..=..=...+++|..++..+|+++--++. .+.+.. .+...|... .. --.++||.+.+..+++|.
T Consensus 3 ~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s-----si~p~df~~~~~-~y~~~fD~~as~~siEh~ 76 (177)
T PF03269_consen 3 KSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS-----SILPVDFAKNWQ-KYAGSFDFAASFSSIEHF 76 (177)
T ss_pred ceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc-----cccHHHHHHHHH-Hhhccchhhheechhccc
Confidence 4566677664333333345677789999987632221 111110 111222221 11 224689999999999998
Q ss_pred ccCC----CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 87 MCGT----NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 87 ~~~~----~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.-|. .....-.+.+.++.++|||||.+++.-
T Consensus 77 GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 77 GLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred cccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 6443 222345567889999999999998754
No 280
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.35 E-value=0.0059 Score=52.58 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=77.6
Q ss_pred CCCEEEeCCCCchhHHHHHHc-----CCCcEEEEeCCHHHHHHHHHhhc-CC-CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-----GYEDIVNIDISSVAIDMMKMKYE-EI-PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-----~~~~v~~vD~s~~~~~~a~~~~~-~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
...|+=+|+|.|-+.....+. ...++++++-+|+++...+.+.- .. .+|+++..|++.+. -+....|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~-ap~eq~DI~VSE 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWN-APREQADIIVSE 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccC-CchhhccchHHH
Confidence 346788999999988776653 22379999999999887776442 22 67999999999987 556889998862
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++.+....+-..+.|.-+.+.|||+|+.+=.+|
T Consensus 447 -----LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 447 -----LLGSFGDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred -----hhccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence 222222334567899999999999998865444
No 281
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.30 E-value=0.011 Score=46.90 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=36.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc---------CCCcEEEEeCCHHHHHHHHHhhcC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD---------GYEDIVNIDISSVAIDMMKMKYEE 52 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~---------~~~~v~~vD~s~~~~~~a~~~~~~ 52 (210)
...+|+|+|+|+|.++..+++. ...+++.+|.|+.+.+..+++...
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3478999999999999999873 124799999999999988888754
No 282
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.22 E-value=0.094 Score=41.09 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=58.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCC-CCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+||=+|=..-......+....++|+.+|+++..++..++..++. -+++.+..|+.+ +|.--.++||+++.....-
T Consensus 46 k~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT-- 123 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT-- 123 (243)
T ss_dssp -EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS--
T ss_pred CEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC--
Confidence 468888854432222222234458999999999999888776432 349999999998 3423357999999865532
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.+...-++.+....||..|......++
T Consensus 124 ------~~G~~LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 124 ------PEGLKLFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp ------HHHHHHHHHHHHHTB-STT-EEEEEE-
T ss_pred ------HHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 277888999999999877744444444
No 283
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.066 Score=44.39 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=75.4
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCC-----CcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCC--------C
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGY-----EDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFF--------E 70 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~-----~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~--------~ 70 (210)
..+.+|||+.+..|.=+..+++... ..|++=|+++.-+...+...+.. +++.+...|+...|.. .
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 3456899999999998888877521 26999999998887777666433 5566666666665521 2
Q ss_pred CCcccEEEECCccchhccCC----------------CchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 71 DESFDAVIDKGTLDSLMCGT----------------NAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~~~~~~~----------------~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...||-|++.-...+-..-. .=..-..+++.+-.++||+||.++-.+++
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 34699988742211100000 00113457789999999999999888776
No 284
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.10 E-value=0.01 Score=46.30 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=47.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---c---CC-----CCcEEEEcccCC-CCCCCCCcccE
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---E---EI-----PQLKYLQMDVRD-MSFFEDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~---~---~~-----~~v~~~~~d~~~-~~~~~~~~fD~ 76 (210)
.+|||.-+|-|.-+.-++..|. +|+++|.||.+....+... . .. .+++++.+|..+ +. .++++||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcCCCCCE
Confidence 4899999999999998887776 8999999998766555332 1 11 368999999988 44 56889999
Q ss_pred EEECCccch
Q 028385 77 VIDKGTLDS 85 (210)
Q Consensus 77 Vi~~~~l~~ 85 (210)
|+...++.+
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 998777655
No 285
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.10 E-value=0.11 Score=43.41 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=65.4
Q ss_pred CEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccC-C-----CCCCC-CCcccEEEEC
Q 028385 10 DTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVR-D-----MSFFE-DESFDAVIDK 80 (210)
Q Consensus 10 ~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~-~-----~~~~~-~~~fD~Vi~~ 80 (210)
+|+=+|||+ |.++..+++. +..+|+.+|.++.-++.|++.... ........ + .. .. ...+|+++..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~-~t~g~g~D~vie~ 245 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILE-LTGGRGADVVIEA 245 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHH-HhCCCCCCEEEEC
Confidence 799999998 7777777765 677999999999999999985422 11111111 0 11 12 2369999864
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.. ....+..+.++++|||.+.++....
T Consensus 246 ~G-------------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 246 VG-------------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CC-------------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 32 3447888999999999998887653
No 286
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.05 E-value=0.075 Score=46.38 Aligned_cols=111 Identities=20% Similarity=0.127 Sum_probs=73.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhh--cCCC-CcEEEEcccCCCCCC----CCCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKY--EEIP-QLKYLQMDVRDMSFF----EDESF 74 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~--~~~~-~v~~~~~d~~~~~~~----~~~~f 74 (210)
...+|.|..||+|.+.....+. . ...++|.|+++.....|+.+. .+.. ++....+|-..-|.. ..+.|
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~ 265 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKF 265 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccce
Confidence 3348999999999887666543 1 246999999999999999876 2222 345555554444412 34679
Q ss_pred cEEEECCccchhcc----------------C-CCchHH-HHHHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSLMC----------------G-TNAPIS-ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~~~----------------~-~~~~~~-~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|.|+++..+....+ + ..+... ....++++...|+|||+..++.
T Consensus 266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 99999876641111 1 012222 3788999999999998665544
No 287
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.02 E-value=0.0068 Score=41.43 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=30.7
Q ss_pred cccEEEECCccchh--ccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 73 SFDAVIDKGTLDSL--MCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~--~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.||+|+|..+.-++ .. +.+.+..+++.+++.|+|||.|++-
T Consensus 1 ~yDvilclSVtkWIHLn~---GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNW---GDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHH---HHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecC---cCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998776543 12 3357889999999999999999653
No 288
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=95.95 E-value=0.017 Score=48.54 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=55.8
Q ss_pred CCcEEEEcccCCCC-CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 54 PQLKYLQMDVRDMS-FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 54 ~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
++++++++++.+.- ..+++++|.++.....+++ +.....+.++++.+.++|||+++.-+...+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm-----~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM-----DPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC-----CHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 78999999998842 2568999999999999998 7789999999999999999999998877543
No 289
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.88 E-value=0.047 Score=46.01 Aligned_cols=108 Identities=15% Similarity=0.201 Sum_probs=64.4
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc-cCC-C-CCCCCCcccEEEECCcc
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-VRD-M-SFFEDESFDAVIDKGTL 83 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d-~~~-~-~~~~~~~fD~Vi~~~~l 83 (210)
.+||..|||. |..+..+++. +..+++++|.+++..+.+++.... ..+.....+ ... + ....+..+|+|+..-.-
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~ 264 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-ETINFEEVDDVVEALRELTGGRGPDVCIDAVGM 264 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-EEEcCCcchHHHHHHHHHcCCCCCCEEEECCCC
Confidence 4799999987 8888888776 444699999999999988875311 111111111 100 1 10123469999885311
Q ss_pred c-------hhcc-CCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 D-------SLMC-GTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~-------~~~~-~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ ++.- ...+..+....+.++.++|+++|.++...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 265 EAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred cccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 1 0000 00011223557888999999999998765
No 290
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.84 E-value=0.049 Score=45.04 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=57.4
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+||=.|||. |..+..+++. +..+|+++|.+++-++.+++.-... -+.....+..... ...+.+|+|+....
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~-vi~~~~~~~~~~~-~~~g~~D~vid~~G---- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK-LVNPQNDDLDHYK-AEKGYFDVSFEVSG---- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE-EecCCcccHHHHh-ccCCCCCEEEECCC----
Confidence 4688788753 5555666665 5557999999999998887642210 0011111121211 11235899986321
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+....++|++||.++++..
T Consensus 245 ---------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 12356777889999999987754
No 291
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.81 E-value=0.059 Score=42.19 Aligned_cols=101 Identities=12% Similarity=0.029 Sum_probs=66.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC--CCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~Vi~~~~l 83 (210)
..+||-+|+++|.....+.+. +..-|++++.|...-.......++.+|+--+.-|+..... ..-...|+|++.-.
T Consensus 157 GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDva- 235 (317)
T KOG1596|consen 157 GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFADVA- 235 (317)
T ss_pred CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEeccCC-
Confidence 357999999999988877765 3345999999975433333333333677777778775320 12235777775321
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
......-+.-+..-.||+||.|++.-
T Consensus 236 --------qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 236 --------QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred --------CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 22445555667888999999997753
No 292
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.77 E-value=0.15 Score=44.64 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=64.3
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-----------CC-C----
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-----------MS-F---- 68 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-----------~~-~---- 68 (210)
...+|+=+|||. |..+...++. |. +|+++|.+++.++.+++.- .++...|..+ +. .
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslG-----A~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMG-----AEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC-----CeEEEeccccccccccchhhhcchhHHHH
Confidence 457899999997 6666666666 55 8999999999999888742 2222221111 00 0
Q ss_pred ----CCC--CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 69 ----FED--ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 69 ----~~~--~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+.+ +.+|+|+....... .+.+..+.++..+.+||||.++.+..
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg-------~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPG-------KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCc-------ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 36999997543211 12233335999999999999887765
No 293
>PHA01634 hypothetical protein
Probab=95.65 E-value=0.03 Score=39.39 Aligned_cols=45 Identities=9% Similarity=-0.126 Sum_probs=40.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 51 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 51 (210)
...+|+|||++-|..+..++-.|.+.|++++.++...+.+++..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence 345799999999999999999999999999999999999988764
No 294
>PRK11524 putative methyltransferase; Provisional
Probab=95.61 E-value=0.025 Score=45.76 Aligned_cols=63 Identities=14% Similarity=0.061 Sum_probs=42.1
Q ss_pred CCcEEEEcccCCC-CCCCCCcccEEEECCccchh-ccCC----C----chHHHHHHHHHHHHhccCCcEEEEE
Q 028385 54 PQLKYLQMDVRDM-SFFEDESFDAVIDKGTLDSL-MCGT----N----APISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 54 ~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l~~~-~~~~----~----~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.+..++++|+.+. ..+++++||+|++...+.-- .+.. . -..-....+.++.|+|||||.+++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3457888998884 23678899999997654210 0000 0 0122357899999999999999875
No 295
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.36 E-value=0.59 Score=34.68 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=62.3
Q ss_pred EeCCCCchhHHHHHHc-C-CCcEEEEeCCHH--HHHHHH---HhhcCC--CCcE-EEEcccCCCCC---CCCCcccEEEE
Q 028385 13 RRAAPSIVMSEDMVKD-G-YEDIVNIDISSV--AIDMMK---MKYEEI--PQLK-YLQMDVRDMSF---FEDESFDAVID 79 (210)
Q Consensus 13 diGcG~G~~~~~l~~~-~-~~~v~~vD~s~~--~~~~a~---~~~~~~--~~v~-~~~~d~~~~~~---~~~~~fD~Vi~ 79 (210)
=+|=|.=+++..+++. + ..++++.-++.. ..+.-. ++.... .++. ....|+.++.. ...+.||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 3566666677777765 3 446666655443 222111 111111 2232 34457777651 35788999998
Q ss_pred CCccchhccCC--------CchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 80 KGTLDSLMCGT--------NAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 80 ~~~l~~~~~~~--------~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++.... .+. .++.-+..++..+.++|+++|.+.++-...
T Consensus 82 NFPH~G--~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 82 NFPHVG--GGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred eCCCCC--CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 876432 111 233456788999999999999997776553
No 296
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.21 E-value=0.015 Score=39.53 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=25.3
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDI 38 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~ 38 (210)
...-.|||||+|.+..-|.+.|+ .=.|+|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 34679999999999999988887 6778885
No 297
>PTZ00357 methyltransferase; Provisional
Probab=95.19 E-value=0.086 Score=47.30 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=63.6
Q ss_pred CCEEEeCCCCchhHHHHHHc----CC-CcEEEEeCCHHHHHHHHHhh---cCC--------CCcEEEEcccCCCCCCCC-
Q 028385 9 RDTCRRAAPSIVMSEDMVKD----GY-EDIVNIDISSVAIDMMKMKY---EEI--------PQLKYLQMDVRDMSFFED- 71 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~----~~-~~v~~vD~s~~~~~~a~~~~---~~~--------~~v~~~~~d~~~~~~~~~- 71 (210)
..|+=+|+|-|-+....++. +. .++++||-++.++...+.+. ... ..|+++..|++.+. .+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~-~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIA-TAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccc-cccc
Confidence 45899999999988766553 22 27999999966433333221 222 24899999999975 221
Q ss_pred ----------CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccC----CcE
Q 028385 72 ----------ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP----GGI 112 (210)
Q Consensus 72 ----------~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkp----gG~ 112 (210)
+.+|+||+- ++-+....+-..+.|.-+.+.||+ +|+
T Consensus 781 ~~s~~~P~~~gKaDIVVSE-----LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVSE-----LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccccceehHh-----hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999872 222222334456778888888876 775
No 298
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.18 E-value=0.041 Score=42.76 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=50.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCC----cEEEEc-ccCC-CCC--CCCCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQ----LKYLQM-DVRD-MSF--FEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~----v~~~~~-d~~~-~~~--~~~~~fD~ 76 (210)
...++||||.|-.-.--.+-.+ ++ +.+|.|+++..++.|+.....+++ ++.... |-.. +++ -.++.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 4457899998864333222222 55 899999999999999988754432 333322 2111 111 22678999
Q ss_pred EEECCccchh
Q 028385 77 VIDKGTLDSL 86 (210)
Q Consensus 77 Vi~~~~l~~~ 86 (210)
++|+..+|.-
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999998853
No 299
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.06 E-value=0.072 Score=44.18 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=70.7
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||.=+|+|.=+..++.. +..+++.-|+||.+++.++++.+-+ .+...+..|+..+-.-....||+|=. +
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----D 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----D 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----C
Confidence 457999999999999988876 4448999999999999999988533 34555556665532012367888742 2
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.| ..+.-+++...+.++.||.+.++
T Consensus 129 --PF-----GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 129 --PF-----GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred --CC-----CCCchHHHHHHHHhhcCCEEEEE
Confidence 22 34455788888888899998664
No 300
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.86 E-value=0.087 Score=43.01 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=64.0
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CCCCCcccEEEECCccchhc
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~~~l~~~~ 87 (210)
+++|+=||-|.++.-+.+.|...+.++|+++.+.+.-+.+.. ....+|+.++. .++. .+|+++.......++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS 75 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFS 75 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHHHH-T-SEEEEE---TTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----ccccccccccccccccc-cceEEEeccCCceEe
Confidence 689999999999999999888789999999999998888873 78889998864 2343 599999865544332
Q ss_pred c-C-----CCchHHHHHHHHHHHHhccCC
Q 028385 88 C-G-----TNAPISASQMLGEVSRLLKPG 110 (210)
Q Consensus 88 ~-~-----~~~~~~~~~~l~~i~r~Lkpg 110 (210)
. + .+++..+...+-++.+.++|.
T Consensus 76 ~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk 104 (335)
T PF00145_consen 76 IAGKRKGFDDPRNSLFFEFLRIVKELKPK 104 (335)
T ss_dssp TTSTHHCCCCHTTSHHHHHHHHHHHHS-S
T ss_pred ccccccccccccchhhHHHHHHHhhccce
Confidence 1 1 123333444444455556775
No 301
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.82 E-value=0.11 Score=41.19 Aligned_cols=107 Identities=18% Similarity=0.129 Sum_probs=63.0
Q ss_pred CCCCEEEeCCCCchhHHHHHH---c---CCCcEEEEeCCH--------------------------HHHHHHHHhhcCC-
Q 028385 7 GTRDTCRRAAPSIVMSEDMVK---D---GYEDIVNIDISS--------------------------VAIDMMKMKYEEI- 53 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~---~---~~~~v~~vD~s~--------------------------~~~~~a~~~~~~~- 53 (210)
-++.|+|.||=.|..+..+.. . ...++++.|.-+ ..++..+++....
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 357899999988876655432 1 233577776422 1344455555432
Q ss_pred ---CCcEEEEcccCC-CCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 54 ---PQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 54 ---~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+++.++.+.+.+ +|..+.+.+-++.... +.. +.-..+|..++..|.|||++++-+|..+.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlY-------esT~~aLe~lyprl~~GGiIi~DDY~~~g 217 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLY-------ESTKDALEFLYPRLSPGGIIIFDDYGHPG 217 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SH-------HHHHHHHHHHGGGEEEEEEEEESSTTTHH
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEec--cch-------HHHHHHHHHHHhhcCCCeEEEEeCCCChH
Confidence 578999999876 3433444444443322 222 67789999999999999999998888743
No 302
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.82 E-value=0.3 Score=40.37 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=58.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~~~l~ 84 (210)
...+++|+=||-|.+..-+.+.++.-+.++|+++.+++.-+.+.. ...+...|+.... .+....+|+++......
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~---~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP---HGDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC---CCceeechHhhcChhhccccCCCEEEeCCCCc
Confidence 456899999999999988888888779999999999988887774 3456667776643 12122789999876665
Q ss_pred hh
Q 028385 85 SL 86 (210)
Q Consensus 85 ~~ 86 (210)
.+
T Consensus 79 ~F 80 (328)
T COG0270 79 DF 80 (328)
T ss_pred ch
Confidence 54
No 303
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.03 Score=48.01 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=75.3
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC---CCCCCcccE
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS---FFEDESFDA 76 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~---~~~~~~fD~ 76 (210)
..+..+|||.=|++|.-+...++. +..++++-|.++.++...+++.+-. ..+.....|+..+- .-....||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 345678999999999999999886 5568999999999999888877432 33555666665531 123578999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|=. +- | .....+|+...+.++.||.+.++.
T Consensus 187 IDL----DP--y-----Gs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 187 IDL----DP--Y-----GSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred Eec----CC--C-----CCccHHHHHHHHHhhcCCEEEEEe
Confidence 863 22 2 445667888899999999997754
No 304
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.57 Score=37.03 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=71.4
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhh-cCCCCc--EEEEcccCC-CCCCCCCcccE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKY-EEIPQL--KYLQMDVRD-MSFFEDESFDA 76 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~-~~~~~v--~~~~~d~~~-~~~~~~~~fD~ 76 (210)
++....+|+|+|+..=+..+.+. + ...++-+|+|...++...+.. ...+.+ .-+++|.+- +...+...--+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45567899999999877776653 2 247999999999887554443 444544 344555443 11123222222
Q ss_pred E-EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE-EEcCCch
Q 028385 77 V-IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML-ITYGDPK 122 (210)
Q Consensus 77 V-i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~-~~~~~p~ 122 (210)
+ +...+ .|..++.+...++.++...|+||-.|++ +++..|.
T Consensus 157 ~~flGSt-----lGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~A 199 (321)
T COG4301 157 FVFLGST-----LGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPA 199 (321)
T ss_pred EEEeccc-----ccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHH
Confidence 2 22223 3344778899999999999999998877 4444444
No 305
>PRK13699 putative methylase; Provisional
Probab=94.63 E-value=0.065 Score=41.89 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=39.7
Q ss_pred EEEEcccCCC-CCCCCCcccEEEECCccch-hc--cC-----CCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 57 KYLQMDVRDM-SFFEDESFDAVIDKGTLDS-LM--CG-----TNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 57 ~~~~~d~~~~-~~~~~~~fD~Vi~~~~l~~-~~--~~-----~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+++++|+.+. ..++++++|+|+......- .. .+ ....+-....+.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5677887663 2378999999999765520 00 01 011123467899999999999988753
No 306
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.23 E-value=0.4 Score=39.43 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=53.3
Q ss_pred EEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 11 TCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 11 vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
|+|+-||-|.++.-+.+.|..-+.++|+++.+.+.-+.+.. + .+..+|+.++..-.-..+|+++.......+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~---~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG---N-KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC---C-CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 68999999999999988888667889999999998888773 3 445678877641112258999887554433
No 307
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.22 E-value=0.064 Score=41.27 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=62.8
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhc----------------------C------
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYE----------------------E------ 52 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~----------------------~------ 52 (210)
+..+...+-|-.||+|.+.--+.-. ....|++.|+++++++.|+++.. +
T Consensus 48 ~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eA 127 (246)
T PF11599_consen 48 EGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEA 127 (246)
T ss_dssp SS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred cCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHH
Confidence 3456678999999999887655332 34579999999999999987431 0
Q ss_pred ----------------CCCcEEEEcccCCCC---C-CCCCcccEEEECCccchhc-cC-CCchHHHHHHHHHHHHhccCC
Q 028385 53 ----------------IPQLKYLQMDVRDMS---F-FEDESFDAVIDKGTLDSLM-CG-TNAPISASQMLGEVSRLLKPG 110 (210)
Q Consensus 53 ----------------~~~v~~~~~d~~~~~---~-~~~~~fD~Vi~~~~l~~~~-~~-~~~~~~~~~~l~~i~r~Lkpg 110 (210)
.......+.|+.+.. . -.....|+|+..-..-++. +. ..+......++..++.+|-.+
T Consensus 128 l~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~ 207 (246)
T PF11599_consen 128 LESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPER 207 (246)
T ss_dssp HHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT
T ss_pred HHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCC
Confidence 012456777776621 0 1223469999865544432 11 135567889999999999555
Q ss_pred cEEEE
Q 028385 111 GIYML 115 (210)
Q Consensus 111 G~~~~ 115 (210)
+++.+
T Consensus 208 sVV~v 212 (246)
T PF11599_consen 208 SVVAV 212 (246)
T ss_dssp -EEEE
T ss_pred cEEEE
Confidence 55544
No 308
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.17 E-value=0.79 Score=37.34 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=58.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-C----CCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-M----SFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~----~~~~~~~fD~Vi~~~ 81 (210)
..+||..|+|. |..+..+++.-..++++++.++...+.+++.. ++.+..+-.. . .....+.+|+|+...
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG-----ADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC-----CCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 45788888763 67777777763347999999999888875532 1111111110 0 002356799998642
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. ....+.++.+.|+++|.++....
T Consensus 241 g-------------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 241 G-------------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred C-------------CHHHHHHHHHHhhcCCEEEEECC
Confidence 1 13457788999999999987654
No 309
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.16 E-value=0.1 Score=44.84 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=73.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCC----C--CCCCCcccEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDM----S--FFEDESFDAV 77 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~----~--~~~~~~fD~V 77 (210)
..+.+|-+|-|.|.+...+..+ +..++++++++|.|++.|++...- ..+.++...|..+. . .-.+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 3467889999999998877655 556899999999999999987631 12333343443331 0 1246689988
Q ss_pred EEC---CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 78 IDK---GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 78 i~~---~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+.. ---|.+.| ..+.--.+.++..+..+|.|.|.|++--
T Consensus 375 ~~dvds~d~~g~~~-pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQC-PPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred EEECCCCCcccCcC-CchHHHHHHHHHHHhhccCccceEEEEE
Confidence 752 11222212 1223356788999999999999996643
No 310
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.01 E-value=0.25 Score=34.43 Aligned_cols=86 Identities=20% Similarity=0.259 Sum_probs=57.8
Q ss_pred CchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC-----CCCCCCcccEEEECCccchhccCCCc
Q 028385 18 SIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-----SFFEDESFDAVIDKGTLDSLMCGTNA 92 (210)
Q Consensus 18 ~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~-----~~~~~~~fD~Vi~~~~l~~~~~~~~~ 92 (210)
-|..+..+++.-..+|+++|.++.-.+.+++.-.. .+...+-.+. ...+...+|+|+..-.
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~----~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g---------- 67 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD----HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG---------- 67 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES----EEEETTTSSHHHHHHHHTTTSSEEEEEESSS----------
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc----ccccccccccccccccccccccceEEEEecC----------
Confidence 46777788876336999999999999998875421 2222222211 1133458999997422
Q ss_pred hHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 93 PISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 93 ~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
....++...++|+++|.++++....
T Consensus 68 ---~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ---SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ---SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ---cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2457888899999999998876543
No 311
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=93.95 E-value=0.75 Score=36.73 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=69.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCC-HHHHHHHHHhhcC-----CCCcEEEEcccCC-CC------CCCCCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDIS-SVAIDMMKMKYEE-----IPQLKYLQMDVRD-MS------FFEDES 73 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~-----~~~v~~~~~d~~~-~~------~~~~~~ 73 (210)
+...|+.+|||--.-...+.. +. .+..+|++ |++++.-++.+.+ ..+.+++..|+.. +. +|..+.
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~-~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPW-PD-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CCcEEEEeCCccccHHHhcCC-CC-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 345699999998776655532 22 34455555 4455555555542 2578889899862 10 133344
Q ss_pred ccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 74 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
--++++-+++.++ +.+...++++.+.+...||+.+++-.
T Consensus 159 ptl~i~EGvl~YL-----~~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 159 PTAWLWEGLLMYL-----TEEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred CeeeeecchhhcC-----CHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 5578888888887 77889999999999888888886543
No 312
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=93.44 E-value=0.23 Score=40.44 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=75.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc---------C---C---------CcEEEEeCCH--HHHHHHHHhhcCC----------
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD---------G---Y---------EDIVNIDISS--VAIDMMKMKYEEI---------- 53 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~---------~---~---------~~v~~vD~s~--~~~~~a~~~~~~~---------- 53 (210)
...+||-||.|-|.=...++.. . . ..++.+|+.+ ..++.........
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 3468999999997544333311 0 0 2799999885 5555554433111
Q ss_pred ---------CCcEEEEcccCCCCCCC-------CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 54 ---------PQLKYLQMDVRDMSFFE-------DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 54 ---------~~v~~~~~d~~~~~~~~-------~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-+++|.+.|+..+. .+ ....++|...+++..++... ...-.++|.++...++||..+++++
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~-~~~l~~ll~~~~~~LITLlFTlNELfs~s--~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLS-EDDLKSLLGPPSPDLITLLFTLNELFSTS--ISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred ccccCCccceeeeEEecccccCC-hHHHHHHhccchhHHHHHHHHHHHHHhcC--hHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 25789999998875 21 23578888888887654332 5678899999999999999999987
Q ss_pred c
Q 028385 118 Y 118 (210)
Q Consensus 118 ~ 118 (210)
-
T Consensus 243 S 243 (315)
T PF11312_consen 243 S 243 (315)
T ss_pred C
Confidence 4
No 313
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.36 E-value=0.27 Score=44.57 Aligned_cols=107 Identities=11% Similarity=0.073 Sum_probs=62.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--------C-----CCcEEEEeCCH---HHHHHHHHh-----------hc-------
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--------G-----YEDIVNIDISS---VAIDMMKMK-----------YE------- 51 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--------~-----~~~v~~vD~s~---~~~~~a~~~-----------~~------- 51 (210)
....+|||+|=|+|.+.....+. + .-+++++|..| +.+..+.+. ..
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 34468999999999876655421 1 13689999643 333322211 10
Q ss_pred CC-------C--CcEEEEcccCCC-CCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 52 EI-------P--QLKYLQMDVRDM-SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 52 ~~-------~--~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. . +++...+|+.+. + .....||+++..+ +.-.+.+.-=-..+++++.|+++|||.+...+
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~-~~~~~~d~~~lD~----FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLP-QLDARADAWFLDG----FAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHH-hccccccEEEeCC----CCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 00 1 244666777663 2 2235699998532 22222222223688999999999999995443
No 314
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.32 E-value=0.69 Score=38.36 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=56.0
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeC---CHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDI---SSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~---s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
..+||=+|+|. |.++..+++. +. ++++++. ++.-.+.+++.-.. .+.....+..... ..+.+|+|+..-.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~--~v~~~~~~~~~~~--~~~~~d~vid~~g 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGAT--YVNSSKTPVAEVK--LVGEFDLIIEATG 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCE--EecCCccchhhhh--hcCCCCEEEECcC
Confidence 34788888864 6666666665 54 7999986 67777777643211 1110011111111 1346899987422
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
....+.+..++|++||.++++...
T Consensus 248 -------------~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 248 -------------VPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred -------------CHHHHHHHHHHccCCcEEEEEecC
Confidence 123577888999999998776543
No 315
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.30 E-value=0.66 Score=37.74 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=54.1
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+||=+|||. |.++..+++. +...+..+|.++..++.+.+.. ++ |..+ ...+.+|+|+..-.
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~-------~i--~~~~---~~~~g~Dvvid~~G---- 209 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE-------VL--DPEK---DPRRDYRAIYDASG---- 209 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc-------cc--Chhh---ccCCCCCEEEECCC----
Confidence 4688888864 6666767665 6645778898887776664321 11 1111 01346899987422
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
-...++.+.+.|+++|+++++-.
T Consensus 210 ---------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ---------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ---------CHHHHHHHHHhhhcCcEEEEEee
Confidence 12356778889999999987654
No 316
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.13 E-value=0.2 Score=41.81 Aligned_cols=44 Identities=14% Similarity=-0.034 Sum_probs=36.4
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHH
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKM 48 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~ 48 (210)
..|-..|+|+|+|.|.++..+.-.....|.+||-|....+.|++
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 34556799999999999999977644589999999888887764
No 317
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=93.08 E-value=0.78 Score=39.39 Aligned_cols=109 Identities=9% Similarity=-0.031 Sum_probs=63.7
Q ss_pred CCEEEeCCCCchh--HHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCC--CCCCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVM--SEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRD--MSFFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~--~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~--~~~~~~~~fD~Vi~~ 80 (210)
..+.|+|.|.|.- +....-.. ...++.||.|..|.........+. ..+.+...-+.+ +|.-..+.||+|++.
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~a 281 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICA 281 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEee
Confidence 3456677665443 33222222 347999999999999888776541 111111101111 331234569999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+.++++.... ......-+.+.+..++|+.+++++-+.
T Consensus 282 h~l~~~~s~~---~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 282 HKLHELGSKF---SRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeccCCch---hhhhhhHHHHHhccCCCceEEEEecCC
Confidence 9999873321 223333445566678999999988554
No 318
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.06 E-value=0.48 Score=35.96 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=66.7
Q ss_pred CCCEEEeCCCCchhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------CCCCCcccE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFDA 76 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~fD~ 76 (210)
+.-|+|+|.-.|..+..++.. | ..+|.++|++-..++.+... .+++.|+.++-.+.. ...++.--+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i~f~egss~dpai~eqi~~~~~~y~kI 146 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDILFIEGSSTDPAIAEQIRRLKNEYPKI 146 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCeEEEeCCCCCHHHHHHHHHHhcCCCcE
Confidence 456899999888776666653 3 13799999987665544332 388999999987753 112222334
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.++-..-|+. +.....++-..++|..|-++++-+
T Consensus 147 fvilDsdHs~-------~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 147 FVILDSDHSM-------EHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEEecCCchH-------HHHHHHHHHhhhHhhcCceEEEec
Confidence 4444445555 666777888889999888886654
No 319
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.94 E-value=0.37 Score=39.34 Aligned_cols=103 Identities=11% Similarity=0.103 Sum_probs=72.7
Q ss_pred CCCCCCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 4 PSTGTRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
|....++|.-||.|. |..+..++-.....|+-+|.|..-+++....+. .+++....+..++. ..-...|+||..-.
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~--~rv~~~~st~~~ie-e~v~~aDlvIgaVL 240 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG--GRVHTLYSTPSNIE-EAVKKADLVIGAVL 240 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC--ceeEEEEcCHHHHH-HHhhhccEEEEEEE
Confidence 555667888899886 777777776644589999999988887766654 34667767666665 33457898886322
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+- ....+.-+.+++.+.||||+.++=+
T Consensus 241 Ip-------gakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 241 IP-------GAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ec-------CCCCceehhHHHHHhcCCCcEEEEE
Confidence 21 1245667788889999999988644
No 320
>PRK10458 DNA cytosine methylase; Provisional
Probab=92.89 E-value=2.1 Score=37.22 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=55.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCC-----------------
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE----------------- 70 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~----------------- 70 (210)
..+++|+=||-|.++.-+-+.|..-+.++|+++.+.+.-+.+....+.......|+.++. ..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~-~~~~~~~~~~~~~~~~~~~ 166 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDIT-LSHKEGVSDEEAAEHIRQH 166 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCc-cccccccchhhhhhhhhcc
Confidence 568999999999999999888886789999999988877777532234455566666653 11
Q ss_pred CCcccEEEECCccc
Q 028385 71 DESFDAVIDKGTLD 84 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~ 84 (210)
-..+|+++......
T Consensus 167 ~p~~DvL~gGpPCQ 180 (467)
T PRK10458 167 IPDHDVLLAGFPCQ 180 (467)
T ss_pred CCCCCEEEEcCCCC
Confidence 12578888765544
No 321
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.88 E-value=1.2 Score=30.80 Aligned_cols=91 Identities=12% Similarity=0.250 Sum_probs=60.3
Q ss_pred CCCCCEEEeCCCCc-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCC-CCcccEEEECCcc
Q 028385 6 TGTRDTCRRAAPSI-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-DESFDAVIDKGTL 83 (210)
Q Consensus 6 ~~~~~vLdiGcG~G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Vi~~~~l 83 (210)
.++++|.|+|.|-= ..+..++++|. .++++|+++. +.+ ..++++..|+.+.. .. =..-|+|.+
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~--~g~~~v~DDitnP~-~~iY~~A~lIYS---- 76 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP--EGLRFVVDDITNPN-ISIYEGADLIYS---- 76 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc--ccceEEEccCCCcc-HHHhhCccceee----
Confidence 35679999999874 45566677786 8999999886 111 45789999988732 11 123567765
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+ ++.++++..+-.+.+.+ |..+++..++
T Consensus 77 --i----RpppEl~~~ildva~aV--ga~l~I~pL~ 104 (129)
T COG1255 77 --I----RPPPELQSAILDVAKAV--GAPLYIKPLT 104 (129)
T ss_pred --c----CCCHHHHHHHHHHHHhh--CCCEEEEecC
Confidence 2 34467777777777754 4556666554
No 322
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.80 E-value=0.64 Score=38.07 Aligned_cols=93 Identities=14% Similarity=0.277 Sum_probs=56.4
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc---cCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d---~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+||-.|||. |..+..+++. +...+++++.++...+.+++... . .++..+ ..... ...+.+|+|+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~--~--~vi~~~~~~~~~~~-~~~~~vd~vld~~ 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA--D--ETVNLARDPLAAYA-ADKGDFDVVFEAS 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC--C--EEEcCCchhhhhhh-ccCCCccEEEECC
Confidence 345788888765 5566666665 54468999999888886655321 1 112111 11121 1224599998642
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. ...++++.+.|+++|+++...
T Consensus 240 g~-------------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 GA-------------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CC-------------HHHHHHHHHHHhcCCEEEEEe
Confidence 21 234678889999999997664
No 323
>PRK11524 putative methyltransferase; Provisional
Probab=92.72 E-value=0.34 Score=39.17 Aligned_cols=43 Identities=19% Similarity=0.117 Sum_probs=38.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 51 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 51 (210)
...|||.=||+|..+....+.+- +.+|+|++++.++.|++++.
T Consensus 209 GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 209 GDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHH
Confidence 34699999999999988877766 89999999999999999974
No 324
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=92.63 E-value=0.075 Score=42.88 Aligned_cols=69 Identities=12% Similarity=0.020 Sum_probs=51.5
Q ss_pred CCEEEeCCCCchhHH-HHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 9 RDTCRRAAPSIVMSE-DMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~-~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
-.|.|+=+|-|.++. .+...+.+.|+++|.+|-.++..++..+.. .+.....+|-+... ++...|-|..
T Consensus 196 eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~--~~~~AdrVnL 268 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK--PRLRADRVNL 268 (351)
T ss_pred chhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC--ccccchheee
Confidence 357899999999999 666778889999999999999998887543 33445556655543 5666776664
No 325
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.55 E-value=0.98 Score=37.32 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=56.6
Q ss_pred CCEEEeCCCC-chhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.+||=+|||. |.++..+++. +..+++++|.++.-++.+++ . ... .. . .++. .+..+|+|+..-.-
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~~~-~~-~--~~~~--~~~g~d~viD~~G~-- 232 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---DET-YL-I--DDIP--EDLAVDHAFECVGG-- 232 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---Cce-ee-h--hhhh--hccCCcEEEECCCC--
Confidence 4788899865 5555555553 45589999999988887764 2 111 11 1 1111 12248999863220
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
......+.+..++|++||+++++...
T Consensus 233 --------~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 233 --------RGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred --------CccHHHHHHHHHhCcCCcEEEEEeec
Confidence 11245678888999999999877643
No 326
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.36 E-value=2.5 Score=34.78 Aligned_cols=89 Identities=10% Similarity=-0.001 Sum_probs=54.8
Q ss_pred CCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+||=.|+|. |..+..+++....++++++.++.-.+.+++.-.. .++ |..+. ..+.+|+++.... .
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~----~vi--~~~~~---~~~~~d~~i~~~~---~ 233 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAA----SAG--GAYDT---PPEPLDAAILFAP---A 233 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCc----eec--ccccc---CcccceEEEECCC---c
Confidence 34788888753 4455555655333799999999888888764321 111 11111 1235787764321 1
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
...+....+.|++||.++++-.
T Consensus 234 ----------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ----------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ----------HHHHHHHHHhhCCCcEEEEEec
Confidence 2357788899999999987654
No 327
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.23 E-value=0.98 Score=39.65 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=61.3
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-----------CC-C----
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-----------MS-F---- 68 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-----------~~-~---- 68 (210)
...+|+=+|+|. |..+..+++. |. .|+.+|.++..++.+++.- .+++..|... +. .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lG-----a~~v~v~~~e~g~~~~gYa~~~s~~~~~~ 236 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMG-----AEFLELDFKEEGGSGDGYAKVMSEEFIAA 236 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC-----CeEEeccccccccccccceeecCHHHHHH
Confidence 346899999987 5666656655 54 7999999999888777621 2232222211 00 0
Q ss_pred ----CC--CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 69 ----FE--DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 69 ----~~--~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+. -..+|+|+....+..- +.+.-..+++.+.+|||+.++-+.
T Consensus 237 ~~~~~~e~~~~~DIVI~TalipG~-------~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 237 EMELFAAQAKEVDIIITTALIPGK-------PAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHhCCCCEEEECcccCCC-------CCCeeehHHHHhhCCCCCEEEEee
Confidence 11 2459999876543221 233456788899999999976544
No 328
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.99 E-value=0.8 Score=36.66 Aligned_cols=93 Identities=13% Similarity=0.061 Sum_probs=55.3
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEE-ccc-CCC-CCCCCCcccEEEECCcc
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ-MDV-RDM-SFFEDESFDAVIDKGTL 83 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~-~d~-~~~-~~~~~~~fD~Vi~~~~l 83 (210)
.+||=+|+|. |.++..+++. +..+|+++|.++.-.+.+++.-.. .++. .+. ... .......+|+|+....
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~g~d~vid~~G- 196 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT----ALAEPEVLAERQGGLQNGRGVDVALEFSG- 196 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc----EecCchhhHHHHHHHhCCCCCCEEEECCC-
Confidence 4688888754 4555555555 554599999999888887764321 1111 010 000 0012346899986321
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....++...+.|+++|.++++..
T Consensus 197 ------------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ------------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ------------ChHHHHHHHHHhcCCCEEEEecc
Confidence 13357777889999999987763
No 329
>PRK13699 putative methylase; Provisional
Probab=91.98 E-value=0.52 Score=36.84 Aligned_cols=43 Identities=9% Similarity=-0.027 Sum_probs=37.9
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 52 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~ 52 (210)
..|||.=||+|..+....+.+. +++|+|+++...+.+.++...
T Consensus 165 ~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 165 AIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 4699999999999988888776 899999999999999988743
No 330
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.85 E-value=2.3 Score=28.97 Aligned_cols=88 Identities=16% Similarity=0.108 Sum_probs=56.7
Q ss_pred CCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEECCccchhccC
Q 028385 16 APSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDKGTLDSLMCG 89 (210)
Q Consensus 16 cG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~~l~~~~~~ 89 (210)
||.|.++..+++. ...+++.+|.+++.++.+++.. +.++.+|..+.. ...-+..|.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~------- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----VEVIYGDATDPEVLERAGIEKADAVVILTD------- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----SEEEES-TTSHHHHHHTTGGCESEEEEESS-------
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----cccccccchhhhHHhhcCccccCEEEEccC-------
Confidence 5667777777654 3347999999999988887653 789999998843 123456887776322
Q ss_pred CCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 90 TNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 90 ~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.......+....|-+.|...++....
T Consensus 72 ---~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 ---DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp ---SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred ---CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 12333444455566677777765543
No 331
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.19 E-value=2.9 Score=34.71 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=55.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC-----CCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-----SFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~-----~~~~~~~fD~Vi~~ 80 (210)
..+||=.|+|. |..+..+++. +..+|+++|.++.-.+.+++.-. . .++...-.+. .......+|+|+..
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga--~--~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA--T--HTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC--c--eEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 34688888754 5555666665 55459999999998888865321 1 1111110110 00123468999863
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
-. -...+....+.+++||+++++..
T Consensus 253 ~g-------------~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 253 VG-------------RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CC-------------CHHHHHHHHHHhccCCEEEEECC
Confidence 21 12346667789999999987653
No 332
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.05 E-value=6 Score=31.88 Aligned_cols=75 Identities=11% Similarity=0.188 Sum_probs=46.0
Q ss_pred CCCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC---------CCCccc
Q 028385 8 TRDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 75 (210)
Q Consensus 8 ~~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~fD 75 (210)
...+|-.|++.|. ++..+++.|. +|+.++.++..++...+.......+..+.+|+.+.... .-+..|
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 87 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGID 87 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3467877765542 2333444566 89999999887776655443223455556888764200 115689
Q ss_pred EEEECCcc
Q 028385 76 AVIDKGTL 83 (210)
Q Consensus 76 ~Vi~~~~l 83 (210)
+++.+...
T Consensus 88 ~vI~nAG~ 95 (296)
T PRK05872 88 VVVANAGI 95 (296)
T ss_pred EEEECCCc
Confidence 99987665
No 333
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.00 E-value=2.5 Score=35.31 Aligned_cols=93 Identities=8% Similarity=0.049 Sum_probs=55.4
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC----CCCCCCcccEEEECCc
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SFFEDESFDAVIDKGT 82 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~----~~~~~~~fD~Vi~~~~ 82 (210)
.+||=.|+|. |..+..+++. +..+|+++|.++.-.+.+++.-.. .++..+-.+. .....+.+|+|+..-.
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT----ATVNAGDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc----eEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence 4677788754 5555556665 554699999999988888653211 1111111110 0011236899986321
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+....+.|+++|.+++...
T Consensus 269 -------------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 -------------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -------------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 12356677788999999987654
No 334
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.79 E-value=1.7 Score=33.80 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=57.6
Q ss_pred CCCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------CCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~fD~Vi~ 79 (210)
...+||-.|+|+ |.....+++....++++++.++...+.+++.... .+. +..+.. ....+.+|+|+.
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~----~~~--~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD----HVI--DYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc----eec--cCCcCCHHHHHHHhcCCCCCEEEE
Confidence 345799999986 5566666665335899999998887777554211 111 111111 013457999986
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
...- ...+..+.+.|+++|.++....
T Consensus 208 ~~~~-------------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 208 AVGG-------------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCCC-------------HHHHHHHHHhcccCCEEEEEcc
Confidence 4221 1346677888999999977653
No 335
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.68 E-value=5.7 Score=29.75 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=58.5
Q ss_pred EEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------------------CCCcEEEEcccCCCCCC
Q 028385 11 TCRRAAPS-I-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------------------IPQLKYLQMDVRDMSFF 69 (210)
Q Consensus 11 vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------------~~~v~~~~~d~~~~~~~ 69 (210)
|.=+|+|+ | .++..++..|. +|+.+|.+++.++.++++... ..++. ...|+...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~--- 76 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA--- 76 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG---
T ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH---
Confidence 55577765 2 44444555676 999999999999988776532 02233 22333322
Q ss_pred CCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 70 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 70 ~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
. ..|+|+-.-. +.+ +-.+++++++.+++.|+-.+...+.+-+.
T Consensus 77 ~--~adlViEai~-E~l-------~~K~~~~~~l~~~~~~~~ilasnTSsl~i 119 (180)
T PF02737_consen 77 V--DADLVIEAIP-EDL-------ELKQELFAELDEICPPDTILASNTSSLSI 119 (180)
T ss_dssp C--TESEEEE-S--SSH-------HHHHHHHHHHHCCS-TTSEEEE--SSS-H
T ss_pred h--hhheehhhcc-ccH-------HHHHHHHHHHHHHhCCCceEEecCCCCCH
Confidence 1 5788885432 223 77899999999999999998766654443
No 336
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.61 E-value=5.3 Score=30.67 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=59.9
Q ss_pred CCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC---------CCCccc
Q 028385 9 RDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 75 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~fD 75 (210)
.+||-.|++. .++..+ ++.+. +|++++.++.-.+...+......++.++.+|+.+.... .-+..|
T Consensus 6 ~~vlItGa~g-~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 6 KKVAIIGVSE-GLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred cEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4688888754 333333 34466 89999999877665544433224678889998864200 013468
Q ss_pred EEEECCccchhccCCCc-----------hHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 76 AVIDKGTLDSLMCGTNA-----------PISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~-----------~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.++........ ..... ......+++.+.+.++++|.+++++.
T Consensus 84 ~ii~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 84 GLVVTVGGYVE-DTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred EEEEcCCCcCC-CchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 77765432110 00000 01122345666667778888777653
No 337
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.49 E-value=2.9 Score=33.84 Aligned_cols=101 Identities=14% Similarity=0.253 Sum_probs=63.3
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------------------CCcEEEEcccCCCCC
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------------------PQLKYLQMDVRDMSF 68 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------~~v~~~~~d~~~~~~ 68 (210)
+|-=||+|+ +.++..++..|. +|+..|.+++.++.++++..+. .+++ ...|....
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~-- 82 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF-- 82 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh--
Confidence 678889884 455555666676 8999999999999877654211 1111 12222111
Q ss_pred CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhc-cCCcEEEEEEcCCchhhH
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLL-KPGGIYMLITYGDPKARM 125 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~L-kpgG~~~~~~~~~p~~~~ 125 (210)
..-|+|+-. +.+ ..+-.+.++.++.+.+ +|+..+...+.+.|....
T Consensus 83 ---~~~d~ViEa-v~E-------~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~l 129 (286)
T PRK07819 83 ---ADRQLVIEA-VVE-------DEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL 129 (286)
T ss_pred ---CCCCEEEEe-ccc-------CHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 346888753 222 2366778889999998 788777655544454433
No 338
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.96 E-value=7.6 Score=30.53 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=58.4
Q ss_pred CCEEEeCCCCc-hhHH----HHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC---------CCCCcc
Q 028385 9 RDTCRRAAPSI-VMSE----DMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G-~~~~----~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~f 74 (210)
..+|-.|+++| .++. .+++.|. +|+.++.++...+..++..+....+.++.+|+.+... -.-+..
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~l 89 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGRL 89 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCCC
Confidence 35788887652 4444 4445566 7888888765433222222222335577888877430 012568
Q ss_pred cEEEECCccchh-----ccCCCchHHHH-----------HHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSL-----MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~-----~~~~~~~~~~~-----------~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+++.+..+... ...+.+.++.. .+.+.+...|+.+|.++.++
T Consensus 90 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 90 DFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred CEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 999987654211 01111223332 23466677777788876654
No 339
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=89.56 E-value=2.5 Score=33.36 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=52.3
Q ss_pred CCCEEEeCCCC-chhHHH-HHHcCCCcEEEEeCCHHHH-------------------HHHHHhhcCC-CCcEEEEcccCC
Q 028385 8 TRDTCRRAAPS-IVMSED-MVKDGYEDIVNIDISSVAI-------------------DMMKMKYEEI-PQLKYLQMDVRD 65 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~-l~~~~~~~v~~vD~s~~~~-------------------~~a~~~~~~~-~~v~~~~~d~~~ 65 (210)
..+|+=+|+|. |.|... |++.|..+++.+|.+...+ +.+++++... |++++...+..-
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~ 109 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI 109 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhh
Confidence 35688888865 777755 4566878899888776543 3334444332 666655544332
Q ss_pred CC----CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHH
Q 028385 66 MS----FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSR 105 (210)
Q Consensus 66 ~~----~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r 105 (210)
.+ .+-...||+|++ +++.+ .....++..+++
T Consensus 110 t~en~~~~~~~~~DyvID--aiD~v-------~~Kv~Li~~c~~ 144 (263)
T COG1179 110 TEENLEDLLSKGFDYVID--AIDSV-------RAKVALIAYCRR 144 (263)
T ss_pred CHhHHHHHhcCCCCEEEE--chhhh-------HHHHHHHHHHHH
Confidence 21 244558999996 34444 444555555554
No 340
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=89.12 E-value=5.7 Score=29.33 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=59.7
Q ss_pred CCCEEEeCCCCchhHHHHHH--cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVK--DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~~ 82 (210)
..+|+-|||-+-... +.+ ....+++..|++...-... .+ .|+.-|..... ..-.++||+|++...
T Consensus 26 ~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~RF~~~~-------~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPP 95 (162)
T PF10237_consen 26 DTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDRRFEQFG-------GD-EFVFYDYNEPEELPEELKGKFDVVVIDPP 95 (162)
T ss_pred CCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecchHHhcC-------Cc-ceEECCCCChhhhhhhcCCCceEEEECCC
Confidence 357888888764333 333 2445899999987653321 22 46666665522 112579999999877
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ + ..+-..+....+..++|+++.+++++
T Consensus 96 F--l-----~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 96 F--L-----SEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred C--C-----CHHHHHHHHHHHHHHhCccceEEEec
Confidence 6 2 33555666777777779989887776
No 341
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.09 E-value=3.1 Score=33.95 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=70.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-----CcEEEEcccCCCC--------CCCCCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-----QLKYLQMDVRDMS--------FFEDES 73 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~v~~~~~d~~~~~--------~~~~~~ 73 (210)
+...|+-+|||--.-...+-......|+-+|. |+.++.=++.+++.. +++++..|+.+.. +|..+.
T Consensus 92 g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred cccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 34568999998754433332211124555553 556665555555443 7899999998532 244555
Q ss_pred ccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 74 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-=++++-+++-++ +.+...++++.|...+.||..++...
T Consensus 171 pt~~iaEGLl~YL-----~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 171 PTLWIAEGLLMYL-----PEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CeEEEeccccccC-----CHHHHHHHHHHHHHhCCCCceEEEec
Confidence 5678888888887 78899999999999998888875543
No 342
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.03 E-value=3.3 Score=33.31 Aligned_cols=84 Identities=12% Similarity=-0.062 Sum_probs=52.5
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
+|.=||+|. |.++..+.+.+. +|+++|.++..++.+.+.. .+.....+. . .-...|+|+..-.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g----~~~~~~~~~---~--~~~~aDlVilavp----- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERG----LVDEASTDL---S--LLKDCDLVILALP----- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCC----CcccccCCH---h--HhcCCCEEEEcCC-----
Confidence 566788876 566666666666 8999999998888776542 111111111 1 1134688886433
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
.....++++++...++++..+
T Consensus 67 -----~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 -----IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred -----HHHHHHHHHHHHHhCCCCcEE
Confidence 244566788888888877544
No 343
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.86 E-value=7.4 Score=31.62 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=55.4
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC---CCCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM---SFFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD~Vi~~~~ 82 (210)
..+||-+|+|. |..+..+++. +...++.++.+++..+.+++... . .++..+-.+. .....+.+|+|+....
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~--~--~~~~~~~~~~~~~~~~~~~~vd~v~~~~~ 235 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA--T--ETVDPSREDPEAQKEDNPYGFDVVIEATG 235 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC--e--EEecCCCCCHHHHHHhcCCCCcEEEECCC
Confidence 35788888642 4555555555 44338999999988887754321 1 1221111110 0013457999996321
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+.++.+.|+++|.++.+..
T Consensus 236 -------------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 -------------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred -------------ChHHHHHHHHHHhcCCEEEEEec
Confidence 12457777899999999977653
No 344
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.63 E-value=11 Score=31.20 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=60.8
Q ss_pred CCCCCCCCCCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------C--------CCcEEEEccc
Q 028385 1 MATPSTGTRDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------I--------PQLKYLQMDV 63 (210)
Q Consensus 1 ~~~~~~~~~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~--------~~v~~~~~d~ 63 (210)
|.+| ..-.+|.=||+|+ ..++..++..|. +|+..|.+++.++.++++... . .++.+. .|+
T Consensus 1 ~~~~-~~i~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l 77 (321)
T PRK07066 1 MAVI-TDIKTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATI 77 (321)
T ss_pred CCCC-CCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCH
Confidence 3455 2334688899984 455666667777 899999999988876654321 0 112211 111
Q ss_pred CCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 64 RDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 64 ~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
.+ .-..-|+|+-.- .+.+ .-...+++++.+.++|+.++..
T Consensus 78 ~~----av~~aDlViEav-pE~l-------~vK~~lf~~l~~~~~~~aIlaS 117 (321)
T PRK07066 78 EA----CVADADFIQESA-PERE-------ALKLELHERISRAAKPDAIIAS 117 (321)
T ss_pred HH----HhcCCCEEEECC-cCCH-------HHHHHHHHHHHHhCCCCeEEEE
Confidence 11 113458887542 2222 5677889999999999975533
No 345
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.54 E-value=8.4 Score=31.45 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=59.1
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHh--h--cCCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMK--Y--EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~--~--~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
++|+=+|+|. |.++..|.+.|. +|+.++.+++-++..++. . .............. .+ -..+.||+|+..-=
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~-~~-~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAE-TA-DAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCC-Cc-ccccccCEEEEECC
Confidence 5799999985 566666766665 899999987666666542 1 00011011111111 11 12357998875311
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
-.+...+++.+...+.++..++.+.-+
T Consensus 80 ----------~~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 80 ----------AYDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred ----------HHhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 124567888899999999988776644
No 346
>PRK07109 short chain dehydrogenase; Provisional
Probab=88.53 E-value=6.5 Score=32.46 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=49.1
Q ss_pred CCCCCCCEEEeCCCCchh---HHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCC---------C
Q 028385 4 PSTGTRDTCRRAAPSIVM---SEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------E 70 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~---~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~ 70 (210)
++.....||=.|+..|.- +..+++.|. +|+.++.++..++...+.... ..++.++.+|+.+.... .
T Consensus 4 ~~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 4 KPIGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 344445688888655432 233445566 799999998777665554432 24677888998774300 1
Q ss_pred CCcccEEEECCcc
Q 028385 71 DESFDAVIDKGTL 83 (210)
Q Consensus 71 ~~~fD~Vi~~~~l 83 (210)
-+.+|+++.+...
T Consensus 83 ~g~iD~lInnAg~ 95 (334)
T PRK07109 83 LGPIDTWVNNAMV 95 (334)
T ss_pred CCCCCEEEECCCc
Confidence 2468999887653
No 347
>PRK08267 short chain dehydrogenase; Provisional
Probab=88.39 E-value=9.2 Score=29.88 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=46.6
Q ss_pred CEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----CC------CCcccE
Q 028385 10 DTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----FE------DESFDA 76 (210)
Q Consensus 10 ~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~~------~~~fD~ 76 (210)
++|-.|++.| .++..+++.+. +|+.++.++..++...+... ..++.++.+|+.+... +. .+.+|+
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 4777776543 23334445566 89999999887776655443 2468889999987430 00 356899
Q ss_pred EEECCcc
Q 028385 77 VIDKGTL 83 (210)
Q Consensus 77 Vi~~~~l 83 (210)
|+.+...
T Consensus 81 vi~~ag~ 87 (260)
T PRK08267 81 LFNNAGI 87 (260)
T ss_pred EEECCCC
Confidence 9887654
No 348
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.38 E-value=3.1 Score=34.10 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=54.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc---ccCCCCC-CCCCcccEEEECC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRDMSF-FEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~---d~~~~~~-~~~~~fD~Vi~~~ 81 (210)
..+||=+|+|. |..+..+++. +..++++++.+++-.+.+++.-. . .++.. +...+.. .....+|+|+...
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga--~--~~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA--D--FVINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC--C--EEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 34677778753 4555555655 55349999999988888765321 1 11111 1111100 1234699998632
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. -...+....+.|+++|.+++...
T Consensus 240 g-------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 240 G-------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred C-------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 2 12345667788999999987654
No 349
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.33 E-value=3.9 Score=34.67 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=49.5
Q ss_pred CCEEEeCCCC-chhH-HHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC--CCCcccEEEECCcc
Q 028385 9 RDTCRRAAPS-IVMS-EDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF--EDESFDAVIDKGTL 83 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~-~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~Vi~~~~l 83 (210)
.+||=||||. |... ..+++++..+|+..|.|.+..+.+..... .+++..+.|+.+.+.. --+.+|+|++-..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 5799999965 3333 33355564689999999988887766543 3688899999886410 11345999885443
No 350
>PLN02740 Alcohol dehydrogenase-like
Probab=88.20 E-value=6.4 Score=33.01 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=55.1
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc-----cCC-CCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-----VRD-MSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~fD~Vi~ 79 (210)
..+||=+|+|. |..+..+++. +..+|+++|.+++-++.+++.-. . .++... ... ......+.+|+|+.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga--~--~~i~~~~~~~~~~~~v~~~~~~g~dvvid 274 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI--T--DFINPKDSDKPVHERIREMTGGGVDYSFE 274 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC--c--EEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 34688888754 5555555655 54469999999998888865321 1 122111 111 00011226999987
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
... ....+....+.+++| |.++++..
T Consensus 275 ~~G-------------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 275 CAG-------------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CCC-------------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 322 123466677788887 98877654
No 351
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.03 E-value=6.5 Score=31.03 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=54.3
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+||-.|+|. |..+..+++. +..++++++.+++..+.+++.- ....+ ... .... .....+|+|+....
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g-~~~~~--~~~--~~~~-~~~~~~d~vl~~~~--- 168 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG-PADPV--AAD--TADE-IGGRGADVVIEASG--- 168 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC-CCccc--ccc--chhh-hcCCCCCEEEEccC---
Confidence 34677778754 5555556655 5423999999988888766542 00111 100 0011 13446899986321
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+....+.|+++|.++.+..
T Consensus 169 ----------~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 ----------SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred ----------ChHHHHHHHHHhcCCcEEEEEec
Confidence 12356777889999999977643
No 352
>PRK09072 short chain dehydrogenase; Provisional
Probab=87.84 E-value=8.3 Score=30.24 Aligned_cols=74 Identities=8% Similarity=0.147 Sum_probs=47.4
Q ss_pred CCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC--------CCCcccEE
Q 028385 9 RDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF--------EDESFDAV 77 (210)
Q Consensus 9 ~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~--------~~~~fD~V 77 (210)
..+|=.|++.| .++..+++.|. +|++++.++..++...+......++.++.+|+.+.... ..+..|++
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~l 84 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVL 84 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEE
Confidence 45777776553 23344455576 79999999877766655442224688888998874300 02467999
Q ss_pred EECCcc
Q 028385 78 IDKGTL 83 (210)
Q Consensus 78 i~~~~l 83 (210)
+.....
T Consensus 85 v~~ag~ 90 (263)
T PRK09072 85 INNAGV 90 (263)
T ss_pred EECCCC
Confidence 887554
No 353
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=87.74 E-value=2.9 Score=32.56 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=46.0
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEE
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVID 79 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~ 79 (210)
++++=+|||. +.++..|.+.+. +|+.+|.+++.++...+.. .....+++|..+.. ...-..+|++++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~---~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADE---LDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhh---cceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 3577788875 345555555666 8999999999877743321 34678899988843 234567898886
No 354
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=87.72 E-value=0.28 Score=40.47 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=71.0
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHH-------HhhcCC---C-CcEEEEcccCCCCCCCCCcccEEE
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMK-------MKYEEI---P-QLKYLQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~-------~~~~~~---~-~v~~~~~d~~~~~~~~~~~fD~Vi 78 (210)
-|.|-=.|||.+....+..|. -|.|.||+-.++...+ +++++. + -+.+..+|..+.+...+..||.|+
T Consensus 211 ivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaIv 289 (421)
T KOG2671|consen 211 IVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAIV 289 (421)
T ss_pred EEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeEEE
Confidence 479999999999888888776 8999999999888442 222222 2 367889999887733456899999
Q ss_pred ECCccchhc----cCC----C-----------c-------hHHHHHHHHHHHHhccCCcEEEEE
Q 028385 79 DKGTLDSLM----CGT----N-----------A-------PISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 79 ~~~~l~~~~----~~~----~-----------~-------~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
|.....--. .+. + + ..-...++.=..+.|..||++++.
T Consensus 290 cDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 290 CDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred eCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 964331100 000 0 0 012345577788899999998775
No 355
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.61 E-value=7.9 Score=31.63 Aligned_cols=93 Identities=14% Similarity=0.223 Sum_probs=53.5
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc---ccCC-CC-CCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRD-MS-FFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~---d~~~-~~-~~~~~~fD~Vi~~ 80 (210)
..+||-.|+|. |..+..+++. +...+++++.++...+.+++... . .++.. +... +. ...++.+|+|+..
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~--~--~vi~~~~~~~~~~i~~~~~~~~~d~vld~ 243 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA--T--DIINPKNGDIVEQILELTGGRGVDCVIEA 243 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC--c--EEEcCCcchHHHHHHHHcCCCCCcEEEEc
Confidence 34677767642 5555666665 43468888888877776664321 1 11111 1100 00 0233579999863
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..- ...+.+..+.|+++|+++...
T Consensus 244 ~g~-------------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 244 VGF-------------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred cCC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence 211 135777888999999987654
No 356
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=87.59 E-value=2.6 Score=31.84 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=56.3
Q ss_pred CCEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---------------CCcEEEEcccCCCCCCCC
Q 028385 9 RDTCRRAAPS-I-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---------------PQLKYLQMDVRDMSFFED 71 (210)
Q Consensus 9 ~~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------~~v~~~~~d~~~~~~~~~ 71 (210)
++|-=+|.|. | .++..+++.|. +|+|+|+++.-++...+..... .++.+. .|.... -
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a----i 74 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA----I 74 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH----H
T ss_pred CEEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh----h
Confidence 3566677775 3 33444566677 9999999999888776543110 122221 222220 1
Q ss_pred CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhH
Q 028385 72 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARM 125 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~ 125 (210)
...|+++..-.-..-..+..+.....++++.+.+.++++-.+++-+...|....
T Consensus 75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 235665542111100111223456889999999999997666555544555443
No 357
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.53 E-value=7 Score=32.15 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc---ccCCC-CCCCCCccc-EEEEC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRDM-SFFEDESFD-AVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~---d~~~~-~~~~~~~fD-~Vi~~ 80 (210)
..+||=.|+|. |..+..+++. +...+++++.++.-.+.+++.-. . .++.. +.... .......+| +|+..
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga--~--~~i~~~~~~~~~~~~~~~~~~~d~~v~d~ 236 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA--M--QTFNSREMSAPQIQSVLRELRFDQLILET 236 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC--c--eEecCcccCHHHHHHHhcCCCCCeEEEEC
Confidence 34677778754 5555555655 55348899999988887754321 1 11111 10111 001234577 66652
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. .-...+.+..+.|++||.+++...
T Consensus 237 -----~--------G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 237 -----A--------GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred -----C--------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 2 113467778899999999987653
No 358
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.28 E-value=6.8 Score=35.28 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=56.5
Q ss_pred CCEEEeCCCCchhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEECC
Q 028385 9 RDTCRRAAPSIVMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~ 81 (210)
.+|+=+|+| ..+..+++ ++. +++.+|.+++.++.+++. ...++.+|+.+.. ...-+..|.+++..
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-----GYKVYYGDATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence 456666655 44444443 355 899999999999988752 4678999998853 12344677777521
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. + .+....+-...|.+.|...++.....
T Consensus 473 ~---------d-~~~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 473 N---------E-PEDTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred C---------C-HHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 1 1 22222333344556788777665433
No 359
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=87.22 E-value=9 Score=32.82 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=58.8
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcE-----E-EEcccCCCCCCCCCcccEEE
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLK-----Y-LQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~-----~-~~~d~~~~~~~~~~~fD~Vi 78 (210)
.+|.=||.|. +.++..+++.|. +|+++|.++..++..+...... +.+. . ..+...... ..+.-|+|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~--~~~~aDvvi 80 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT--TPEPADAFL 80 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec--ccccCCEEE
Confidence 5677788875 345555666676 8999999999888643221000 0000 0 000000000 012457776
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 123 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~ 123 (210)
..-.-..-..+.........+++.+.+.+++|..++..+...|..
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 532211000011122566777888999999887776655545543
No 360
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=87.10 E-value=8.5 Score=31.23 Aligned_cols=93 Identities=9% Similarity=-0.040 Sum_probs=54.3
Q ss_pred CCCEEEeCCC-CchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAP-SIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+||-.|+| .|..+..+++.-..++++++.++...+.+++... . .+....-.....-..+.+|+++....
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~--~--~~~~~~~~~~~~~~~~~~d~vi~~~~---- 234 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGA--D--EVVDSGAELDEQAAAGGADVILVTVV---- 234 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCC--c--EEeccCCcchHHhccCCCCEEEECCC----
Confidence 3568888886 4555555666533379999999988887754321 1 11111100000001246899886321
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
....+..+.+.|+++|.++.+.
T Consensus 235 ---------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ---------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ---------cHHHHHHHHHhcccCCEEEEEC
Confidence 1235677788999999997764
No 361
>PRK12939 short chain dehydrogenase; Provisional
Probab=87.04 E-value=8.9 Score=29.57 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=45.1
Q ss_pred CCCEEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCC----CC-----CCc
Q 028385 8 TRDTCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF----FE-----DES 73 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~~-----~~~ 73 (210)
..++|=.|+ +|.++..++ +.+. +++.++.++..++...+.... ..++.++.+|+.+... +. -+.
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 456787775 444444444 4465 789999888766655444322 2468888999887430 00 146
Q ss_pred ccEEEECCc
Q 028385 74 FDAVIDKGT 82 (210)
Q Consensus 74 fD~Vi~~~~ 82 (210)
.|+|+....
T Consensus 85 id~vi~~ag 93 (250)
T PRK12939 85 LDGLVNNAG 93 (250)
T ss_pred CCEEEECCC
Confidence 899887654
No 362
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.54 E-value=15 Score=29.55 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=54.3
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----------------------CCcEEEEcccCC
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----------------------PQLKYLQMDVRD 65 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------~~v~~~~~d~~~ 65 (210)
+|.=||+|+ +.++..++..+. +|+.+|.+++.++.++++.... .++.+. .|...
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 82 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYES 82 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHHH
Confidence 577888885 345555666676 8999999999998765533210 011111 11111
Q ss_pred CCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 66 MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 66 ~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
. ...|+|+..-. + .......+++++.+.++++..+.
T Consensus 83 ---~--~~aDlVieav~-e-------~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 83 ---L--SDADFIVEAVP-E-------KLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred ---h--CCCCEEEEcCc-C-------cHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 24688875321 1 11346788888999988887664
No 363
>PRK08265 short chain dehydrogenase; Provisional
Probab=86.39 E-value=14 Score=28.97 Aligned_cols=106 Identities=10% Similarity=0.118 Sum_probs=58.0
Q ss_pred CCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCCcccE
Q 028385 9 RDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~~fD~ 76 (210)
..+|=.|+..| .++..+++.|. +|+.+|.++.-++...+... .++.++.+|+.+... + .-+..|+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG--ERARFIATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 46777776543 23333444566 89999998765554443331 357788899887530 0 0146899
Q ss_pred EEECCccchhccCCCchHHH-----------HHHHHHHHHhc-cCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISA-----------SQMLGEVSRLL-KPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~-----------~~~l~~i~r~L-kpgG~~~~~~ 117 (210)
++.+........-..+.++. ..+++.+.+.+ +++|.++.++
T Consensus 84 lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~is 136 (261)
T PRK08265 84 LVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFT 136 (261)
T ss_pred EEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 88875432110001122222 23444555555 5678776654
No 364
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.26 E-value=11 Score=30.30 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=53.6
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEE-E-cccCCCCCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYL-Q-MDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~-~-~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+|+=+|+|. +.++..+++.+. +|+.++.++..++..++.......-... . .-..+.. ....+|+|+..--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~d~vila~k--- 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA--ELGPQDLVILAVK--- 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh--HcCCCCEEEEecc---
Confidence 678889876 344455555565 8999999877766655432100000000 0 0011111 1257898886322
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
......+++.+...+.++..+++..-
T Consensus 76 -------~~~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 76 -------AYQLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred -------cccHHHHHHHHhhhcCCCCEEEEecC
Confidence 13457778888888888777765543
No 365
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=86.25 E-value=7.3 Score=31.72 Aligned_cols=89 Identities=16% Similarity=0.077 Sum_probs=52.8
Q ss_pred CCEEEeCCCC--chhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.+|.=||+|. +.++..+.+.+. .+|+++|.++...+.+++.- . ......+... .-...|+|+..-..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g---~-~~~~~~~~~~----~~~~aDvViiavp~-- 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELG---L-GDRVTTSAAE----AVKGADLVILCVPV-- 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC---C-CceecCCHHH----HhcCCCEEEECCCH--
Confidence 5788899886 344455555553 37999999998877765421 0 1111112111 11347988864332
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
.....++.++...+++|..++.
T Consensus 77 --------~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 77 --------GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred --------HHHHHHHHHHHhhCCCCCEEEe
Confidence 3345667778788899886643
No 366
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.19 E-value=11 Score=30.91 Aligned_cols=93 Identities=17% Similarity=0.231 Sum_probs=54.6
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC-----CCCCCCcccEEEECC
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-----SFFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~-----~~~~~~~fD~Vi~~~ 81 (210)
.+||-.|+|. |..+..+++. +...++++|.++...+.+++.-. . .++..+-.+. .......+|+|+...
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~--~--~~v~~~~~~~~~~i~~~~~~~~~d~vld~~ 243 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA--T--DIVDYKNGDVVEQILKLTGGKGVDAVIIAG 243 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC--c--eEecCCCCCHHHHHHHHhCCCCCcEEEECC
Confidence 4677777653 4555555655 55469999999888777765321 1 1111111111 001234699998632
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. -...+.++.+.|+++|.++.+..
T Consensus 244 g-------------~~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 244 G-------------GQDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred C-------------CHHHHHHHHHHhhcCCEEEEecc
Confidence 1 12457788899999999876543
No 367
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=86.16 E-value=5.3 Score=29.89 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=53.6
Q ss_pred CEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-----CCcEEEEcccCCCC--------CCCCCccc
Q 028385 10 DTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMS--------FFEDESFD 75 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~--------~~~~~~fD 75 (210)
.|+.+|||--.....+.... ...++-+|. |++++.-++..+.. .+.+++.+|+.+.. ++..+.--
T Consensus 81 qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~pt 159 (183)
T PF04072_consen 81 QVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRPT 159 (183)
T ss_dssp EEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSEE
T ss_pred EEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCCe
Confidence 69999999988888887753 335555553 44555555444332 23678999998732 24456666
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHH
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEV 103 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i 103 (210)
++++-+++.++ +.+....+++.+
T Consensus 160 l~i~Egvl~Yl-----~~~~~~~ll~~i 182 (183)
T PF04072_consen 160 LFIAEGVLMYL-----SPEQVDALLRAI 182 (183)
T ss_dssp EEEEESSGGGS------HHHHHHHHHHH
T ss_pred EEEEcchhhcC-----CHHHHHHHHHHh
Confidence 88888888888 666777776654
No 368
>PRK08324 short chain dehydrogenase; Validated
Probab=86.13 E-value=8.6 Score=35.16 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=62.0
Q ss_pred CCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCCccc
Q 028385 9 RDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDESFD 75 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~~fD 75 (210)
..||=.|++.| ++..+ ++.|. +|+.+|.++..++.+.+......++.++.+|+.+... + ..+.+|
T Consensus 423 k~vLVTGasgg-IG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iD 500 (681)
T PRK08324 423 KVALVTGAAGG-IGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVD 500 (681)
T ss_pred CEEEEecCCCH-HHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 45777776443 33333 34466 8999999988776665544322467888889876420 1 123689
Q ss_pred EEEECCccchhc-cCCCchH-----------HHHHHHHHHHHhccC---CcEEEEEE
Q 028385 76 AVIDKGTLDSLM-CGTNAPI-----------SASQMLGEVSRLLKP---GGIYMLIT 117 (210)
Q Consensus 76 ~Vi~~~~l~~~~-~~~~~~~-----------~~~~~l~~i~r~Lkp---gG~~~~~~ 117 (210)
+|+.+...-... ....+.. ....+++.+.+.+++ ||.+++++
T Consensus 501 vvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 501 IVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 999876532110 0001111 234556677777766 67777654
No 369
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.65 E-value=14 Score=30.23 Aligned_cols=94 Identities=16% Similarity=0.225 Sum_probs=54.2
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-------CC-CCCCCcccEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-------MS-FFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-------~~-~~~~~~fD~V 77 (210)
..+||-.|+|. |..+..+++. |...++.++.++...+.+++... . .++..+-.+ +. ......+|+|
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~--~--~vi~~~~~~~~~~~~~~~~~~~~~~~d~v 238 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGA--T--HTVNVRTEDTPESAEKIAELLGGKGPDVV 238 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC--c--EEeccccccchhHHHHHHHHhCCCCCCEE
Confidence 34666677654 5555666665 54238999888887777654311 1 111111111 10 0234569999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+....- ...+.+..+.|+++|+++....
T Consensus 239 ld~~g~-------------~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 239 IECTGA-------------ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred EECCCC-------------HHHHHHHHHHhhcCCEEEEEcc
Confidence 964221 2257778899999999876643
No 370
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=85.63 E-value=1.3 Score=34.56 Aligned_cols=57 Identities=11% Similarity=0.076 Sum_probs=42.6
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRD 65 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~ 65 (210)
.-|.+||.|.|..+..+.+.+..+...++.++.++.-.+-..+.. .+..++.+|+..
T Consensus 52 ~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLR 109 (326)
T ss_pred ceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEeccccce
Confidence 348999999999999999988878999999988776655444332 245566666654
No 371
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.59 E-value=15 Score=33.35 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=45.2
Q ss_pred CCCEEEeCCCC-chhHHH-HHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSED-MVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~-l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~ 79 (210)
..+|+=+|||. |..... +.+.+. +++.+|.+++.++.+++. ...++.+|..+.. ...-+..|.+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF-----GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc-----CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 35788888875 443333 333355 899999999999988652 4678999999853 123346777775
No 372
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.42 E-value=6.4 Score=33.71 Aligned_cols=87 Identities=9% Similarity=0.089 Sum_probs=54.0
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|+=+|+|. |......++. |. +|+.+|.++.-...|++. ..... +..+. . ...|+|+..-.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~-----G~~~~--~~~e~--v--~~aDVVI~atG--- 266 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME-----GYEVM--TMEEA--V--KEGDIFVTTTG--- 266 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc-----CCEEc--cHHHH--H--cCCCEEEECCC---
Confidence 35789999987 5555555554 55 899999999877777642 12222 12111 1 24799986321
Q ss_pred hccCCCchHHHHHHHH-HHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLG-EVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~-~i~r~LkpgG~~~~~~~~ 119 (210)
. ..++. +..+.+|+||+++.+...
T Consensus 267 ---------~-~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 ---------N-KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ---------C-HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 1 22344 458899999999777643
No 373
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.73 E-value=19 Score=28.89 Aligned_cols=93 Identities=22% Similarity=0.244 Sum_probs=57.0
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------C------------CCcEEEEcccCCCCC
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------I------------PQLKYLQMDVRDMSF 68 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~------------~~v~~~~~d~~~~~~ 68 (210)
+|.=||+|. +.++..++..+. +|+++|.+++.++.++++.++ . .++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 577788884 566666667776 899999999998765532210 0 02221 122211
Q ss_pred CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-+..|+|+..-. ....-...+++++.+.++++..+...+
T Consensus 80 --~~~aDlVi~av~--------e~~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 80 --LKDADLVIEAAT--------ENMDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred --hccCCeeeeccc--------ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 134688875311 112445689999999999988774433
No 374
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=84.65 E-value=1.5 Score=35.57 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=44.3
Q ss_pred CCCchhHHHHHHc----CCCcEEEEeCCHHHHHHHHHhhc---CCCCcEE----EEcccCCCC----CCCCCcccEEEEC
Q 028385 16 APSIVMSEDMVKD----GYEDIVNIDISSVAIDMMKMKYE---EIPQLKY----LQMDVRDMS----FFEDESFDAVIDK 80 (210)
Q Consensus 16 cG~G~~~~~l~~~----~~~~v~~vD~s~~~~~~a~~~~~---~~~~v~~----~~~d~~~~~----~~~~~~fD~Vi~~ 80 (210)
.|+|.++..+.++ +..+++.+|.++..+-..++.+. ..+++.+ +.+|+.+.. .+.....|+|+-.
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC
Confidence 3667777777664 44589999999999988888773 2244654 488887743 2566789999999
Q ss_pred CccchhccCC
Q 028385 81 GTLDSLMCGT 90 (210)
Q Consensus 81 ~~l~~~~~~~ 90 (210)
..+-|+...+
T Consensus 85 AA~KhVpl~E 94 (293)
T PF02719_consen 85 AALKHVPLME 94 (293)
T ss_dssp -----HHHHC
T ss_pred hhcCCCChHH
Confidence 9998885333
No 375
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=84.58 E-value=5.2 Score=31.80 Aligned_cols=75 Identities=19% Similarity=0.199 Sum_probs=46.5
Q ss_pred HHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHH
Q 028385 22 SEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQML 100 (210)
Q Consensus 22 ~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l 100 (210)
+..+.+.+ ..+|+|.|.++..++.|++.- -+.-...+.+.. ..+|+|+..-. ......++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g----~~~~~~~~~~~~-----~~~DlvvlavP----------~~~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELG----IIDEASTDIEAV-----EDADLVVLAVP----------VSAIEDVL 62 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTT----SSSEEESHHHHG-----GCCSEEEE-S-----------HHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCC----CeeeccCCHhHh-----cCCCEEEEcCC----------HHHHHHHH
Confidence 44555665 358999999999998886542 111122222212 23599987543 36678999
Q ss_pred HHHHHhccCCcEEEE
Q 028385 101 GEVSRLLKPGGIYML 115 (210)
Q Consensus 101 ~~i~r~LkpgG~~~~ 115 (210)
+++...+++|+.+.=
T Consensus 63 ~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 63 EEIAPYLKPGAIVTD 77 (258)
T ss_dssp HHHHCGS-TTSEEEE
T ss_pred HHhhhhcCCCcEEEE
Confidence 999999999987743
No 376
>PRK06701 short chain dehydrogenase; Provisional
Probab=84.55 E-value=12 Score=29.99 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=58.4
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHH-HHHHHHHhhcC-CCCcEEEEcccCCCCC----CC-----CCcc
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSV-AIDMMKMKYEE-IPQLKYLQMDVRDMSF----FE-----DESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~-~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~~-----~~~f 74 (210)
.++|-.|++.|. ++..+++.+. +|+.++.++. ..+...+.... ..++.++.+|+.+... +. -+..
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~i 125 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRL 125 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 457888765542 3334445566 7888887642 23322222222 2457788899877430 10 1368
Q ss_pred cEEEECCccchhc--cCCCc-----------hHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSLM--CGTNA-----------PISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~~--~~~~~-----------~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+|+.+....... ....+ ......+++.+.+.++++|.+++++
T Consensus 126 D~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 126 DILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 9888765432110 11111 1234455667777777888877765
No 377
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.51 E-value=3.3 Score=34.91 Aligned_cols=102 Identities=11% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|+=+|+|. |..+...+.. |. +|+.+|.++...+.+...... .+.....+..++. -.-..+|+|+..-.+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~--~v~~~~~~~~~l~-~~l~~aDvVI~a~~~~ 241 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG--RIHTRYSNAYEIE-DAVKRADLLIGAVLIP 241 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc--eeEeccCCHHHHH-HHHccCCEEEEccccC
Confidence 346799998874 4555544444 55 799999998877666554421 1111111111111 0113589999743210
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+. ..+.-+-++..+.+|||+.++-+.+.
T Consensus 242 ----g~---~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 242 ----GA---KAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred ----CC---CCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 10 01111235555668999988765543
No 378
>PLN02827 Alcohol dehydrogenase-like
Probab=84.27 E-value=12 Score=31.46 Aligned_cols=94 Identities=10% Similarity=0.073 Sum_probs=53.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc-----ccCC-CCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-----DVRD-MSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~-----d~~~-~~~~~~~~fD~Vi~ 79 (210)
..+||=.|+|. |..+..+++. +...++++|.++.-.+.+++.-. . .++.. +... +.....+.+|+|+.
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa--~--~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV--T--DFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC--c--EEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 34678888754 4555555554 55468999999988887755321 1 11111 1101 00011236899986
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
.-. ....+....+.+++| |.++++-.
T Consensus 270 ~~G-------------~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 270 CVG-------------DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCC-------------ChHHHHHHHHhhccCCCEEEEECC
Confidence 322 123466677888998 99976543
No 379
>PRK07806 short chain dehydrogenase; Provisional
Probab=84.17 E-value=17 Score=28.02 Aligned_cols=108 Identities=10% Similarity=0.042 Sum_probs=57.4
Q ss_pred CCCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCH-HHHHHHHHhhcC-CCCcEEEEcccCCCCC----CC-----CC
Q 028385 8 TRDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISS-VAIDMMKMKYEE-IPQLKYLQMDVRDMSF----FE-----DE 72 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~-~~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~~-----~~ 72 (210)
..++|-.|+..| ++..+ ++.+. +|++++.+. ...+......+. ..++.++.+|+.+... +. -+
T Consensus 6 ~k~vlItGasgg-iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 6 GKTALVTGSSRG-IGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CcEEEEECCCCc-HHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 356888886443 33333 34465 788887653 233333222221 1357788889887430 00 13
Q ss_pred cccEEEECCccchhcc-C-----CCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 73 SFDAVIDKGTLDSLMC-G-----TNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~-~-----~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..|+|+.+........ . ..+......+++.+.+.++.+|.+++++
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 5888886653211000 0 0112234567777777777677776654
No 380
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.06 E-value=5.7 Score=32.29 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=54.0
Q ss_pred CCCCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---------CCCCCcc
Q 028385 7 GTRDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---------FFEDESF 74 (210)
Q Consensus 7 ~~~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---------~~~~~~f 74 (210)
....||-=|.|+| .++.++++++. .++..|+++.....-.+..++...++...+|+.+.. .-.-+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V 115 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDV 115 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCc
Confidence 3345777788777 34556666776 899999998877777666654346888999998853 0124679
Q ss_pred cEEEECCcc
Q 028385 75 DAVIDKGTL 83 (210)
Q Consensus 75 D~Vi~~~~l 83 (210)
|+++.+..+
T Consensus 116 ~ILVNNAGI 124 (300)
T KOG1201|consen 116 DILVNNAGI 124 (300)
T ss_pred eEEEecccc
Confidence 999998665
No 381
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=83.96 E-value=0.71 Score=32.51 Aligned_cols=74 Identities=26% Similarity=0.375 Sum_probs=41.1
Q ss_pred CcEEEEcccCC-CCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhccccc
Q 028385 55 QLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVY 133 (210)
Q Consensus 55 ~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~ 133 (210)
.+++..+|+.+ ++ --...||+|+..+ +.....+.-=-..++++++++++|||.+ .+|+........+. ..
T Consensus 32 ~L~L~~gDa~~~l~-~l~~~~Da~ylDg----FsP~~nPelWs~e~~~~l~~~~~~~~~l--~Tys~a~~Vr~~L~--~a 102 (124)
T PF05430_consen 32 TLTLWFGDAREMLP-QLDARFDAWYLDG----FSPAKNPELWSEELFKKLARLSKPGGTL--ATYSSAGAVRRALQ--QA 102 (124)
T ss_dssp EEEEEES-HHHHHH-HB-T-EEEEEE-S----S-TTTSGGGSSHHHHHHHHHHEEEEEEE--EES--BHHHHHHHH--HC
T ss_pred EEEEEEcHHHHHHH-hCcccCCEEEecC----CCCcCCcccCCHHHHHHHHHHhCCCcEE--EEeechHHHHHHHH--Hc
Confidence 45778888866 33 2247899998532 2222222222368999999999999987 55554444433332 34
Q ss_pred ceEE
Q 028385 134 NWKI 137 (210)
Q Consensus 134 ~~~~ 137 (210)
++.+
T Consensus 103 GF~v 106 (124)
T PF05430_consen 103 GFEV 106 (124)
T ss_dssp TEEE
T ss_pred CCEE
Confidence 5554
No 382
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=83.92 E-value=2.1 Score=34.21 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=38.0
Q ss_pred CCEEEeCCCCchhHHHHHHcC------CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDG------YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS 67 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~------~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~ 67 (210)
.-++|+|||.|.++..+++.- ...++.||....-. .+..+.... +.+.-+..|+.++.
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 468999999999999998752 34799999865322 222222221 35666777777754
No 383
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.83 E-value=16 Score=29.49 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=55.0
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------------------CCcEEEEcccCCCCC
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------------------PQLKYLQMDVRDMSF 68 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------~~v~~~~~d~~~~~~ 68 (210)
+|.=||+|. +.++..+++.+. +|+.+|.+++.++.+.++.... .++++. .|...
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKA--- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHH---
Confidence 467788874 345555566676 8999999999998876542110 012211 22211
Q ss_pred CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.-..-|+|+..-. + .......++.++.+.++++..+.+.+
T Consensus 78 -~~~~aD~Vi~avp-e-------~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 78 -AVADADLVIEAVP-E-------KLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred -hhcCCCEEEEecc-C-------CHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 1134688885322 1 11345677888889998887664433
No 384
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=83.69 E-value=5.2 Score=33.16 Aligned_cols=92 Identities=18% Similarity=0.108 Sum_probs=55.9
Q ss_pred CCEEEeCC--CCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc----ccCC-CCCCCCCcccEEEECC
Q 028385 9 RDTCRRAA--PSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM----DVRD-MSFFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~----d~~~-~~~~~~~~fD~Vi~~~ 81 (210)
.+||=.|+ |.|..+..+++.-..++++++.++.-.+.+++.... . .++.. +... +.....+.+|+|+..
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa-~--~vi~~~~~~~~~~~i~~~~~~gvD~v~d~- 235 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF-D--EAFNYKEEPDLDAALKRYFPEGIDIYFDN- 235 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC-C--EEEECCCcccHHHHHHHHCCCCcEEEEEC-
Confidence 46888887 357777777776334799999998887777643321 1 11211 1111 000112468999863
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. . ...+....++|++||.++++-
T Consensus 236 ----v-------G--~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 236 ----V-------G--GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred ----C-------C--HHHHHHHHHHhccCCEEEEEC
Confidence 2 1 135677888999999997654
No 385
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=83.55 E-value=5.1 Score=32.15 Aligned_cols=67 Identities=15% Similarity=0.058 Sum_probs=45.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..+.-.|+|+-.|.++-.+.+++- .|+++|.-+-+-.... .+.|+....|..... -.....|-.+|.
T Consensus 211 ~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~d-----tg~v~h~r~DGfk~~-P~r~~idWmVCD 277 (358)
T COG2933 211 PGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMD-----TGQVTHLREDGFKFR-PTRSNIDWMVCD 277 (358)
T ss_pred CCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhc-----ccceeeeeccCcccc-cCCCCCceEEee
Confidence 446679999999999999999877 8999997664433322 245666666665543 124456665553
No 386
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.25 E-value=18 Score=29.17 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=54.7
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc---------CC----------CCcEEEEcccCCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE---------EI----------PQLKYLQMDVRDMS 67 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---------~~----------~~v~~~~~d~~~~~ 67 (210)
.+|.=||+|. +.++..++..+. +|+..|.+++.++.+.++.. .. .++.+. .|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHH--
Confidence 4577788875 344555556666 89999999998887654321 00 112221 22211
Q ss_pred CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 68 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 68 ~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
-...|+|+..-. + .......+++++...++++..++.
T Consensus 81 ---~~~aD~Vieavp-e-------~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 81 ---LADCDLVIEAAT-E-------DETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred ---hcCCCEEEEcCc-C-------CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 124688885321 1 113356778889999999887753
No 387
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=83.21 E-value=12 Score=30.38 Aligned_cols=92 Identities=12% Similarity=0.038 Sum_probs=55.3
Q ss_pred CCCEEEeCC--CCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc----cCC-CCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAA--PSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD----VRD-MSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d----~~~-~~~~~~~~fD~Vi~~ 80 (210)
..+||=.|+ |.|..+..+++....++++++.+++-.+.+++.-. . .++..+ ... ......+.+|+|+..
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa--~--~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGF--D--VAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC--C--EEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 346877774 35777777777633479999999888887754221 1 111111 111 000123469999863
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. .. ..+....++|+++|+++...
T Consensus 215 -----~-------G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 215 -----V-------GG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred -----C-------CH--HHHHHHHHHhCcCcEEEEec
Confidence 2 11 23577888999999998654
No 388
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=83.20 E-value=16 Score=29.77 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=55.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC----C-CCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD----M-SFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~----~-~~~~~~~fD~Vi~~~ 81 (210)
..+||-.|+|. |..+..+++.-..+++++..+++..+.+++... . +++...-.+ + ...++..+|+++...
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~--~--~v~~~~~~~~~~~l~~~~~~~~vd~vld~~ 235 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGA--D--DTINVGDEDVAARLRELTDGEGADVVIDAT 235 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCC--C--EEecCcccCHHHHHHHHhCCCCCCEEEECC
Confidence 34788888753 566666666633479999888888777754321 1 111111111 1 002345699998642
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. -...+.++.+.|+++|.++...
T Consensus 236 g-------------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 236 G-------------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred C-------------CHHHHHHHHHHHhcCCEEEEEc
Confidence 1 1234677888999999987654
No 389
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=83.19 E-value=27 Score=29.61 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=55.0
Q ss_pred CCEEEeC-CC-CchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCCC---CcEEEEcccC---CCC----C-CCCC
Q 028385 9 RDTCRRA-AP-SIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVR---DMS----F-FEDE 72 (210)
Q Consensus 9 ~~vLdiG-cG-~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~---~v~~~~~d~~---~~~----~-~~~~ 72 (210)
.+||=+| +| -|..+..+++. +..+|+++|.++.-++.+++...... .......|.. +.. . ....
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~ 256 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQ 256 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCC
Confidence 4677786 34 46777777775 23479999999999998887532100 1111111111 110 0 1234
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.+|+|+.... ....+....+.++++|.+++.
T Consensus 257 g~D~vid~~g-------------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 257 GFDDVFVFVP-------------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCEEEEcCC-------------CHHHHHHHHHHhccCCeEEEE
Confidence 6898886311 124567778889988876554
No 390
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=83.12 E-value=7.4 Score=32.40 Aligned_cols=93 Identities=19% Similarity=0.121 Sum_probs=49.5
Q ss_pred CCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEE-cccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ-MDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~-~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+||=.|+|. |..+..+++.-..++++++.++.-...+.+.... . .++. .+........ +.+|+|+....
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga-~--~vi~~~~~~~~~~~~-~~~D~vid~~g---- 256 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA-D--SFLVSTDPEKMKAAI-GTMDYIIDTVS---- 256 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC-c--EEEcCCCHHHHHhhc-CCCCEEEECCC----
Confidence 3577788764 5565666665333788888776543322222211 1 1111 1111111011 24899986321
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+.+..+.|++||.++.+..
T Consensus 257 ---------~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 ---------AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ---------CHHHHHHHHHHhcCCcEEEEeCC
Confidence 12356778889999999987653
No 391
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=82.95 E-value=16 Score=33.82 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=64.9
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------------------CCcEEEEcccCCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------------------PQLKYLQMDVRDMS 67 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------~~v~~~~~d~~~~~ 67 (210)
.+|.=||+|+ +.++..++..|. +|+.+|.+++.++.++++.... .++++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG-- 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 3688889986 455555666677 8999999999998877654210 122222 12111
Q ss_pred CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 68 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 68 ~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
-..-|+|+-. +.+.+ +-.++++.++.++++|+.++...+.+-+.
T Consensus 390 ---~~~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasnTS~l~i 433 (714)
T TIGR02437 390 ---FDNVDIVVEA-VVENP-------KVKAAVLAEVEQHVREDAILASNTSTISI 433 (714)
T ss_pred ---hcCCCEEEEc-CcccH-------HHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 1357888754 33444 77889999999999999888654443333
No 392
>PRK07576 short chain dehydrogenase; Provisional
Probab=82.57 E-value=21 Score=28.05 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=42.5
Q ss_pred CCEEEeCCCCchhHHH----HHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCC----C-----CCCcc
Q 028385 9 RDTCRRAAPSIVMSED----MVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF----F-----EDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~----l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~-----~~~~f 74 (210)
.++|-.|. +|.++.. ++..+. +|+.++.+++-++...+.... ..++.++.+|+.+... + ..+..
T Consensus 10 k~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i 87 (264)
T PRK07576 10 KNVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI 87 (264)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 45777775 4444444 344465 799999988766554433322 2356788888876320 0 12358
Q ss_pred cEEEECC
Q 028385 75 DAVIDKG 81 (210)
Q Consensus 75 D~Vi~~~ 81 (210)
|+++.+.
T Consensus 88 D~vi~~a 94 (264)
T PRK07576 88 DVLVSGA 94 (264)
T ss_pred CEEEECC
Confidence 9998765
No 393
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=82.19 E-value=3.7 Score=33.63 Aligned_cols=92 Identities=12% Similarity=0.106 Sum_probs=55.2
Q ss_pred CCEEEeCC--CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEECC
Q 028385 9 RDTCRRAA--PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~~ 81 (210)
.+||=.|+ |.|..+..+++. |..+|++++.+++-.+.+++.... . .++..+-.++. ...++.+|+|+...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa-~--~vi~~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF-D--AAINYKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC-c--EEEECCCCCHHHHHHHHCCCCceEEEECC
Confidence 46877876 456777777776 443799999998877777654321 1 11211111110 01225699998632
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. . ..+.+..+.|+++|.++.+.
T Consensus 233 g------------~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G------------G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred C------------c--HHHHHHHHHhccCCEEEEEe
Confidence 1 1 12467788999999998654
No 394
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=82.01 E-value=17 Score=30.16 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=54.3
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC----CCCCCCcccEEEECCc
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SFFEDESFDAVIDKGT 82 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~----~~~~~~~fD~Vi~~~~ 82 (210)
.+||-.|+|. |..+..+++. |...++++|.++...+.+++.-. ..++..+-.+. .......+|+|+..-.
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~----~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g 263 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA----THVINPKEEDLVAAIREITGGGVDYALDTTG 263 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----cEEecCCCcCHHHHHHHHhCCCCcEEEECCC
Confidence 4677777653 5555556665 55469999999988877765321 11221111111 0011346899986321
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
....+.++.+.|+++|.++...
T Consensus 264 -------------~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 264 -------------VPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred -------------CcHHHHHHHHHhccCCEEEEeC
Confidence 1234678888999999987654
No 395
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.92 E-value=7.2 Score=31.45 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=55.0
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--------------------CCcEEEEcccCCCC
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--------------------PQLKYLQMDVRDMS 67 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------~~v~~~~~d~~~~~ 67 (210)
+|.=||+|. +.++..+++.+. +|+.+|.+++.++.++++.... .++.+ ..|....
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a- 81 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA- 81 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH-
Confidence 577788875 344455555566 8999999999888887653100 12221 1222211
Q ss_pred CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 68 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 68 ~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
-..-|+|+..-. +.+ +-...+++++...++++-.+..
T Consensus 82 ---~~~aDlVieavp-e~~-------~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 82 ---VKDADLVIEAVP-EDP-------EIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred ---hcCCCEEEEecc-CCH-------HHHHHHHHHHHhhCCCCCEEEE
Confidence 134588876422 111 4567888899888887776533
No 396
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.92 E-value=5 Score=34.46 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=44.7
Q ss_pred CCEEEeCCCCchhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEE
Q 028385 9 RDTCRRAAPSIVMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVID 79 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~ 79 (210)
.+|+=+|+ |.++..+++ .+. +++.+|.+++.++..++.. .++.++.+|..+.. ...-+.+|.|++
T Consensus 232 ~~iiIiG~--G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~---~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 232 KRVMIVGG--GNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL---PNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC---CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 45777777 555555544 344 8999999999988877654 45678899987642 123456888875
No 397
>PRK05650 short chain dehydrogenase; Provisional
Probab=81.85 E-value=20 Score=28.19 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=43.9
Q ss_pred CEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCC---------CCCccc
Q 028385 10 DTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESFD 75 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~fD 75 (210)
+||-.|+.+ .++..+ ++.+. +|+.++.+..-.+...+.... ..++.+..+|+.+.... ..+.+|
T Consensus 2 ~vlVtGasg-gIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGAAS-GLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 467677644 444444 44566 799999887766655443322 24677888898764300 114689
Q ss_pred EEEECCcc
Q 028385 76 AVIDKGTL 83 (210)
Q Consensus 76 ~Vi~~~~l 83 (210)
+++.+...
T Consensus 80 ~lI~~ag~ 87 (270)
T PRK05650 80 VIVNNAGV 87 (270)
T ss_pred EEEECCCC
Confidence 99887554
No 398
>PRK06181 short chain dehydrogenase; Provisional
Probab=81.32 E-value=15 Score=28.77 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=43.5
Q ss_pred CEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCC---------CCCccc
Q 028385 10 DTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFF---------EDESFD 75 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~---------~~~~fD 75 (210)
.||=.|+ +|.++..+ ++.+. +|+.++.++...+...+..... .++.+..+|+.+.... .-+..|
T Consensus 3 ~vlVtGa-sg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 3 VVIITGA-SEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred EEEEecC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4676665 44444444 34465 8999999977665554443222 4677888998774300 013579
Q ss_pred EEEECCcc
Q 028385 76 AVIDKGTL 83 (210)
Q Consensus 76 ~Vi~~~~l 83 (210)
+|+.....
T Consensus 81 ~vi~~ag~ 88 (263)
T PRK06181 81 ILVNNAGI 88 (263)
T ss_pred EEEECCCc
Confidence 98876543
No 399
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=81.29 E-value=23 Score=27.48 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=46.7
Q ss_pred CCCEEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCC----C-----CCCc
Q 028385 8 TRDTCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF----F-----EDES 73 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~----~-----~~~~ 73 (210)
..+||=.|+ +|.++..++ +.|. +|+.++.++..++...+..+.. .++.++.+|+.+... + .-+.
T Consensus 10 ~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 10 GRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 356888885 455554444 4466 7999999987766555554332 357788888887420 0 1245
Q ss_pred ccEEEECCcc
Q 028385 74 FDAVIDKGTL 83 (210)
Q Consensus 74 fD~Vi~~~~l 83 (210)
.|+|+.+...
T Consensus 88 ~d~li~~ag~ 97 (255)
T PRK07523 88 IDILVNNAGM 97 (255)
T ss_pred CCEEEECCCC
Confidence 8988887544
No 400
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=81.22 E-value=7.8 Score=32.71 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=61.1
Q ss_pred CCCCCCCEEEeCCCCchhH----HHHHHc----CCCcEEEEeC----CHHHHHHHHHhhcCC---CC--cEEEEc---cc
Q 028385 4 PSTGTRDTCRRAAPSIVMS----EDMVKD----GYEDIVNIDI----SSVAIDMMKMKYEEI---PQ--LKYLQM---DV 63 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~----~~l~~~----~~~~v~~vD~----s~~~~~~a~~~~~~~---~~--v~~~~~---d~ 63 (210)
.......|+|+|.|.|.-- ..++.+ +.-++|+++. +...++.+.++..+. -+ .+|... ++
T Consensus 107 ~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~ 186 (374)
T PF03514_consen 107 EGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESL 186 (374)
T ss_pred ccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCch
Confidence 3445667999999998433 333443 2236999999 777888777765321 12 334332 22
Q ss_pred CCCC----CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 64 RDMS----FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 64 ~~~~----~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
+++. ....+..=+|-+...||++........++...+-...|.|+|.-..++
T Consensus 187 e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 187 EDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred hhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 2221 122333334445666788753322223333444455557799855433
No 401
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=81.15 E-value=28 Score=30.98 Aligned_cols=63 Identities=8% Similarity=0.056 Sum_probs=42.8
Q ss_pred CCEEEeCCCCchhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEE
Q 028385 9 RDTCRRAAPSIVMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVID 79 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~ 79 (210)
.+|+=+|||. .+..+++ ++. +++.+|.+++.++.+++ .....+.+|+.+.. ...-+..|.++.
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~-----~g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGI-PLVVIETSRTRVDELRE-----RGIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH-----CCCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 4566666654 4444443 354 89999999999888875 25788999998843 123457886664
No 402
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=81.00 E-value=21 Score=29.41 Aligned_cols=41 Identities=24% Similarity=0.123 Sum_probs=30.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHh
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMK 49 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~ 49 (210)
..+||=.|+|. |..+..+++. +. +++++|.++.-++.+++.
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh
Confidence 35788899855 6666666665 54 799999999988888653
No 403
>PRK08177 short chain dehydrogenase; Provisional
Probab=80.95 E-value=19 Score=27.47 Aligned_cols=68 Identities=10% Similarity=0.204 Sum_probs=41.4
Q ss_pred CEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEEEE
Q 028385 10 DTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAVID 79 (210)
Q Consensus 10 ~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~Vi~ 79 (210)
.||=.|+..| .++..+++.|. +|++++.++.-.+..++ ..++.+..+|+.+.. .+..+.+|+|+.
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~ 77 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQA----LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFV 77 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHh----ccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEE
Confidence 4666666433 23444555576 89999988765443322 135677788887642 122357899887
Q ss_pred CCc
Q 028385 80 KGT 82 (210)
Q Consensus 80 ~~~ 82 (210)
+..
T Consensus 78 ~ag 80 (225)
T PRK08177 78 NAG 80 (225)
T ss_pred cCc
Confidence 654
No 404
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=80.80 E-value=15 Score=30.55 Aligned_cols=93 Identities=19% Similarity=0.104 Sum_probs=51.0
Q ss_pred CCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEE-cccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ-MDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~-~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+||-.|+|. |..+..+++.-..+++.++.+++....+.+.+.. . .++. .+...+... ...+|+|+..-.
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~~-~~~~D~vid~~g---- 253 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA-D--DYLVSSDAAEMQEA-ADSLDYIIDTVP---- 253 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC-c--EEecCCChHHHHHh-cCCCcEEEECCC----
Confidence 4577667643 5555666665333688888887766555444321 1 1111 111111101 125888886321
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+....+.|+++|.++.+..
T Consensus 254 ---------~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 ---------VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---------chHHHHHHHHHhccCCEEEEECC
Confidence 12356667789999999877653
No 405
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.64 E-value=35 Score=31.56 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=64.3
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------------------CCcEEEEcccCCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------------------PQLKYLQMDVRDMS 67 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------~~v~~~~~d~~~~~ 67 (210)
.+|.=||+|+ ..++..++..|. +|+..|.+++.++.++++.... .++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 3688899987 455555666677 8999999999998876653210 123222 222211
Q ss_pred CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 68 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 68 ~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
..-|+|+-. +.+-+ +-.+++++++.++++|+.++...+.+-|
T Consensus 391 ----~~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl~ 432 (715)
T PRK11730 391 ----ERVDVVVEA-VVENP-------KVKAAVLAEVEQKVREDTILASNTSTIS 432 (715)
T ss_pred ----cCCCEEEec-ccCcH-------HHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 346888753 33334 7788999999999999988755444333
No 406
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=80.58 E-value=28 Score=28.00 Aligned_cols=96 Identities=10% Similarity=0.058 Sum_probs=51.4
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEE-EEcc-cCCCCCCCCCcccEEEECCc
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKY-LQMD-VRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~-~~~d-~~~~~~~~~~~fD~Vi~~~~ 82 (210)
++|+=+|+|. +.++..+++.+. +|+.++. +..++..++.--.. ..-.. .... ..+.. -....+|+|+..--
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vilavk 77 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPE-ELTGPFDLVILAVK 77 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHH-HccCCCCEEEEEec
Confidence 3678888886 345555566665 7999998 66666554321000 00000 0000 11111 11256898775311
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
......+++++...+.++..++...
T Consensus 78 ----------~~~~~~~~~~l~~~~~~~~~ii~~~ 102 (305)
T PRK12921 78 ----------AYQLDAAIPDLKPLVGEDTVIIPLQ 102 (305)
T ss_pred ----------ccCHHHHHHHHHhhcCCCCEEEEee
Confidence 1345677888888888877665554
No 407
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=80.40 E-value=16 Score=33.83 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=64.6
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------------------CCcEEEEcccCCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------------------PQLKYLQMDVRDMS 67 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------~~v~~~~~d~~~~~ 67 (210)
.+|-=||+|+ +.++..++..|. +|+..|.+++.++.+.++..+. .++++. .|...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG-- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 3588889986 445555566677 8999999999999877654211 122222 12221
Q ss_pred CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 68 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 68 ~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+ ..-|+|+-. +.+.+ +-.+++++++.++++|+.++...+.+-+.
T Consensus 412 -~--~~aDlViEA-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl~i 455 (737)
T TIGR02441 412 -F--KNADMVIEA-VFEDL-------SLKHKVIKEVEAVVPPHCIIASNTSALPI 455 (737)
T ss_pred -h--ccCCeehhh-ccccH-------HHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 1 346777743 33434 77889999999999999888665544333
No 408
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=80.37 E-value=14 Score=30.16 Aligned_cols=98 Identities=8% Similarity=0.066 Sum_probs=52.7
Q ss_pred CCCCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cCC-CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EEI-PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~---~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..++|+=+|+|. +.++..|++.+. +|+.+..++. +..+++. ... .+..+....+...+ -....+|+|+..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vila 79 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVG 79 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence 346899999985 556666666665 7888887652 2222211 000 11111101111111 123568988753
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
--- .....+++.+...+++++.++...-
T Consensus 80 vK~----------~~~~~~~~~l~~~~~~~~~iv~lqN 107 (313)
T PRK06249 80 LKT----------TANALLAPLIPQVAAPDAKVLLLQN 107 (313)
T ss_pred ecC----------CChHhHHHHHhhhcCCCCEEEEecC
Confidence 211 2335677788888999998766543
No 409
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=80.35 E-value=25 Score=30.94 Aligned_cols=108 Identities=11% Similarity=0.153 Sum_probs=65.2
Q ss_pred CCEEEeCCCCchhHHHHHHc---C--CCcEEEEeCCHHHHHHHHHhh--cCC--CCcEEEEcccCCCCCC-CCCcccEEE
Q 028385 9 RDTCRRAAPSIVMSEDMVKD---G--YEDIVNIDISSVAIDMMKMKY--EEI--PQLKYLQMDVRDMSFF-EDESFDAVI 78 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~---~--~~~v~~vD~s~~~~~~a~~~~--~~~--~~v~~~~~d~~~~~~~-~~~~fD~Vi 78 (210)
..|.|..||+|.+.....+. + ...++|.+..+.+...++.+. ... +......+|-...+.+ ....||+|+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~ 298 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVV 298 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEe
Confidence 47999999999988655432 1 235999999999999998764 111 2222333333222112 245699999
Q ss_pred ECCccchh-ccCC-----------------CchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 79 DKGTLDSL-MCGT-----------------NAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 79 ~~~~l~~~-~~~~-----------------~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
++..+.-. ..+. .....-..++..+..+|++||...++
T Consensus 299 ~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 299 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred ecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 87654321 0010 00123346688888999999975544
No 410
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=80.35 E-value=21 Score=30.21 Aligned_cols=107 Identities=7% Similarity=0.021 Sum_probs=57.0
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc---ccCC-CCC-CCCCcccEEEECC
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRD-MSF-FEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~---d~~~-~~~-~~~~~fD~Vi~~~ 81 (210)
.+||=.|+|. |..+..+++. +...++.+|.++.-++.+++.-. . .+... +... +.. .....+|+|+..-
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga--~--~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~ 262 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC--E--TVDLSKDATLPEQIEQILGEPEVDCAVDCV 262 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC--e--EEecCCcccHHHHHHHHcCCCCCcEEEECC
Confidence 3555577754 5555555554 55457777888888888876421 1 11111 1111 100 1234689998743
Q ss_pred ccchhcc-CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMC-GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~-~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.-..... .+....+....+++..+++++||.++++-..
T Consensus 263 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 263 GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 3110000 0000012235788888999999999887653
No 411
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=80.20 E-value=12 Score=30.32 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=69.8
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCC-CCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDM-SFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l~~ 85 (210)
+|+=+| -.-..+.+++-. -..++..+|+++..++.-.+-.++ ..|+.....|+++. |.-....||+.+...+ +-
T Consensus 155 ~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp-eT 232 (354)
T COG1568 155 EIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP-ET 232 (354)
T ss_pred eEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch-hh
Confidence 377777 233333333332 234899999999999988776643 36789999999882 3222468999886432 12
Q ss_pred hccCCCchHHHHHHHHHHHHhccCC---cEEEEEEcCCchhhHhhh
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPG---GIYMLITYGDPKARMIHL 128 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~Lkpg---G~~~~~~~~~p~~~~~~~ 128 (210)
+ .....++.+=...||.- |+|.+.....+...+..+
T Consensus 233 i-------~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~ei 271 (354)
T COG1568 233 I-------KALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREI 271 (354)
T ss_pred H-------HHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHH
Confidence 2 55667777767777766 788776655554443333
No 412
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.10 E-value=12 Score=27.77 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=23.3
Q ss_pred CEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCH
Q 028385 10 DTCRRAAPS-I-VMSEDMVKDGYEDIVNIDISS 40 (210)
Q Consensus 10 ~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~ 40 (210)
+|+=+|||. | ..+..+++.|..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 578899984 4 455666677887899999875
No 413
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=80.09 E-value=13 Score=30.33 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=53.8
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc---cCCC-CCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRDM-SFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d---~~~~-~~~~~~~fD~Vi~~~ 81 (210)
..+||-.|+|. |..+..+++. +...+++++-++...+.+++.-. ..++..+ ...+ .......+|+|+...
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~----~~~~~~~~~~~~~~~~~~~~~~~d~vld~~ 235 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGA----DDTINPKEEDVEKVRELTEGRGADLVIEAA 235 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC----CEEecCccccHHHHHHHhCCCCCCEEEECC
Confidence 34688888654 5555556665 54239999988887776643211 1111111 0111 101234599998641
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. ....+..+.++|+++|.++.+.
T Consensus 236 g-------------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 236 G-------------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred C-------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1235677889999999987664
No 414
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=79.90 E-value=9.1 Score=31.94 Aligned_cols=97 Identities=10% Similarity=0.047 Sum_probs=55.3
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEE--cccCC-CCCCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ--MDVRD-MSFFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~--~d~~~-~~~~~~~~fD~Vi~~~~ 82 (210)
..+||=.|+|. |..+..+++. +..+|+++|.++.-.+.+++.-.. .-+.... .+... +.....+.+|+|+..-.
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 264 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT-DCVNPNDYDKPIQEVIVEITDGGVDYSFECIG 264 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC-eEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 34678788864 5555666665 544799999999988888653211 0010000 00000 00011236899986321
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
....+.+..+.+++| |.++++..
T Consensus 265 -------------~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 265 -------------NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred -------------CHHHHHHHHHHhhcCCCeEEEEec
Confidence 123566677888886 99877664
No 415
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.77 E-value=28 Score=27.38 Aligned_cols=108 Identities=16% Similarity=0.066 Sum_probs=55.8
Q ss_pred CCEEEeCCCC--c---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------C--CCCCcc
Q 028385 9 RDTCRRAAPS--I---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------F--FEDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~--~~~~~f 74 (210)
..+|=.|++. | ..+..+++.|. +|+.++.++...+.+++.........++.+|+.+.. . -.-+..
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 87 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGSF 87 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence 4577778865 3 23455566676 788888764322222222221122345678887742 0 112569
Q ss_pred cEEEECCccchh-----ccCCCchHHHH-----------HHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSL-----MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~-----~~~~~~~~~~~-----------~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+++.+....+. ...+.+.++.. .+++.+.+.++.+|.++.++
T Consensus 88 DilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~is 146 (260)
T PRK06603 88 DFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLT 146 (260)
T ss_pred cEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEe
Confidence 999886543211 01111222222 23445556677788876654
No 416
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=79.61 E-value=9.9 Score=29.75 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=47.7
Q ss_pred CEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC---------CCCCcccEE
Q 028385 10 DTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDESFDAV 77 (210)
Q Consensus 10 ~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~fD~V 77 (210)
++|=.|++.|. ++..+++.|. +|+.++.++..++.+.+......++.++.+|+.+... -.-+..|++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l 80 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL 80 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 57778876552 3344455576 7999999988777665555333467888899876420 012468999
Q ss_pred EECCcc
Q 028385 78 IDKGTL 83 (210)
Q Consensus 78 i~~~~l 83 (210)
+.+...
T Consensus 81 i~naG~ 86 (259)
T PRK08340 81 VWNAGN 86 (259)
T ss_pred EECCCC
Confidence 887553
No 417
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=79.56 E-value=14 Score=29.84 Aligned_cols=88 Identities=15% Similarity=0.012 Sum_probs=55.4
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCC-cEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYE-DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.+|+=+|.|. |.++..+.+.+.. .+++.|.+...+..+.+.- +.....+... . ......|+|+..-.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-----v~d~~~~~~~-~-~~~~~aD~VivavP--- 73 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-----VIDELTVAGL-A-EAAAEADLVIVAVP--- 73 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-----cccccccchh-h-hhcccCCEEEEecc---
Confidence 4677788774 5666666666552 4788888887777665432 2122111100 1 23445799987543
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
......+++++...||+|..+
T Consensus 74 -------i~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 74 -------IEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred -------HHHHHHHHHHhcccCCCCCEE
Confidence 366788999999999998776
No 418
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=79.37 E-value=29 Score=32.01 Aligned_cols=99 Identities=20% Similarity=0.164 Sum_probs=64.4
Q ss_pred CCEEEeCCCC--chhHHHHH-HcCCCcEEEEeCCHHHHHHHHHhhcCC-------------------CCcEEEEcccCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMV-KDGYEDIVNIDISSVAIDMMKMKYEEI-------------------PQLKYLQMDVRDM 66 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------~~v~~~~~d~~~~ 66 (210)
.+|.=||+|+ ..++..++ ..|. +|+..|.+++.++.++++.... .++++. .|...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~- 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG- 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH-
Confidence 4688899987 45555556 4466 8999999999998886554210 123222 12211
Q ss_pred CCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 67 SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 67 ~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+ ..-|+|+-. +.+.+ +-.+++++++.++++|+.++...+.+-+.
T Consensus 387 --~--~~aDlViEa-v~E~~-------~~K~~v~~~le~~~~~~~ilasnTS~l~i 430 (708)
T PRK11154 387 --F--KHADVVIEA-VFEDL-------ALKQQMVAEVEQNCAPHTIFASNTSSLPI 430 (708)
T ss_pred --h--ccCCEEeec-ccccH-------HHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 1 346888753 33334 77889999999999999888665544333
No 419
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.18 E-value=31 Score=28.04 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=52.8
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--------------CCcEEEEcccCCCCCCCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--------------PQLKYLQMDVRDMSFFEDE 72 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~v~~~~~d~~~~~~~~~~ 72 (210)
.+|.=||+|. +.++..+++.+. +|+.+|.+++.++.+++..... .++.+ ..|..+. -.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~----~~ 78 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA----VS 78 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH----hc
Confidence 3577788885 455555666666 8999999999888877642100 01111 1122110 13
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
..|+|+..-. ........++.++..+++++..+.
T Consensus 79 ~aDlVi~av~--------~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 79 GADLVIEAVP--------EKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred cCCEEEEecc--------CcHHHHHHHHHHHHHhCCCCcEEE
Confidence 4688885321 111345677888888777665543
No 420
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=79.05 E-value=7.6 Score=29.50 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEE
Q 028385 94 ISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 94 ~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.-....+.++.|+|||||.+++..
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~ 56 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFI 56 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEe
Confidence 456788999999999999986654
No 421
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=79.04 E-value=21 Score=29.67 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=54.3
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc-c----cCC-CCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-D----VRD-MSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~-d----~~~-~~~~~~~~fD~Vi~ 79 (210)
..+||=.|+|. |..+..+++. +...|+++|.++.-.+.+++.-. . .++.. + ... .....++.+|+|+.
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa--~--~~i~~~~~~~~~~~~v~~~~~~g~d~vid 262 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGA--T--DCVNPKDHDKPIQQVLVEMTDGGVDYTFE 262 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC--C--EEEcccccchHHHHHHHHHhCCCCcEEEE
Confidence 34677778753 4555555655 54469999999998888764321 1 11111 1 100 00012236899986
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
.-. ....+....+.|+++ |.++....
T Consensus 263 ~~g-------------~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 263 CIG-------------NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCC-------------ChHHHHHHHHhhccCCCeEEEEcc
Confidence 311 123567777888887 99887654
No 422
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=78.75 E-value=10 Score=27.75 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=53.3
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
+|-=||+|. ..++..|++.++ +|++.|.+++..+...+.. +. ...+..+.. +..|+|+..-.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g-----~~-~~~s~~e~~----~~~dvvi~~v~----- 66 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAG-----AE-VADSPAEAA----EQADVVILCVP----- 66 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTT-----EE-EESSHHHHH----HHBSEEEE-SS-----
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhh-----hh-hhhhhhhHh----hcccceEeecc-----
Confidence 344566653 233334444576 8999999998877766542 22 222322221 23488886422
Q ss_pred cCCCchHHHHHHHHH--HHHhccCCcEEEEEEcCCchhhHhh
Q 028385 88 CGTNAPISASQMLGE--VSRLLKPGGIYMLITYGDPKARMIH 127 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~--i~r~LkpgG~~~~~~~~~p~~~~~~ 127 (210)
+....+.++.. +...|++|..++-.+...|......
T Consensus 67 ----~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~ 104 (163)
T PF03446_consen 67 ----DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSREL 104 (163)
T ss_dssp ----SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHH
T ss_pred ----cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhh
Confidence 22556777777 8888888888866665566544333
No 423
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=78.69 E-value=40 Score=28.64 Aligned_cols=109 Identities=12% Similarity=0.131 Sum_probs=55.2
Q ss_pred CEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-----------CCcEEEE-cccCCCCCCCCCcccE
Q 028385 10 DTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-----------PQLKYLQ-MDVRDMSFFEDESFDA 76 (210)
Q Consensus 10 ~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~v~~~~-~d~~~~~~~~~~~fD~ 76 (210)
+|-=+|.|. |.....+...++ +|+++|+++..++..++..... .+..+.. .|... .-..-|+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~-~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~----~~~~ad~ 76 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNH-EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE----AYRDADY 76 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh----hhcCCCE
Confidence 455567764 433323333465 8999999999999887643210 0112211 11111 1123577
Q ss_pred EEECCccch-hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhh
Q 028385 77 VIDKGTLDS-LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 124 (210)
Q Consensus 77 Vi~~~~l~~-~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~ 124 (210)
|+..-.-.. .-.+.........+++.+.+ +++|..++..+...|...
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt 124 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFT 124 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchH
Confidence 665321100 00001122566777788887 677777665555555543
No 424
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.65 E-value=31 Score=27.35 Aligned_cols=108 Identities=13% Similarity=0.105 Sum_probs=57.1
Q ss_pred CCEEEeCCCC--c---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC---------CCCCcc
Q 028385 9 RDTCRRAAPS--I---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~f 74 (210)
..+|-.|++. | ..+..+++.|. +|+.++.+....+..++..+......++.+|+.+... -.-+..
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 86 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGKL 86 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence 3577788764 3 34445555676 7888887654333332222221223467888887430 012578
Q ss_pred cEEEECCccchh-----ccCCCchHHHH-----------HHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSL-----MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~-----~~~~~~~~~~~-----------~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+++.+...... .+...+.+++. .+.+.+.+.|+.+|.++.++
T Consensus 87 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~is 145 (271)
T PRK06505 87 DFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLT 145 (271)
T ss_pred CEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEc
Confidence 999987654321 01111222222 23455666677778776654
No 425
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=78.56 E-value=27 Score=28.15 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=54.0
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------C------------CCcEEEEcccCCCCC
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------I------------PQLKYLQMDVRDMSF 68 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~------------~~v~~~~~d~~~~~~ 68 (210)
+|.=||+|. +.++..++..+. +|+..|.+++.++.++++..+ . ..+. ...+...
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~--- 80 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLEE--- 80 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHHH---
Confidence 577788874 355555556665 899999999998866543210 0 0111 1122211
Q ss_pred CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
. ..-|+|+.. + .........+++++...++++..++
T Consensus 81 ~--~~aD~Viea-----v---~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 81 L--RDADFIIEA-----I---VESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred h--CCCCEEEEc-----C---ccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 235888753 2 1123566778888999999887664
No 426
>PRK06484 short chain dehydrogenase; Validated
Probab=78.45 E-value=42 Score=29.33 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=60.9
Q ss_pred CCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCCcccE
Q 028385 9 RDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~~fD~ 76 (210)
..+|=.|++.| .++..+++.|. +|+.++.++..++...+... .++..+.+|+.+... + .-+..|+
T Consensus 270 k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 346 (520)
T PRK06484 270 RVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALG--DEHLSVQADITDEAAVESAFAQIQARWGRLDV 346 (520)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CceeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 35677776655 23344455576 89999998877776655442 345667888877430 1 1256899
Q ss_pred EEECCccchh--ccCCCchHH-----------HHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSL--MCGTNAPIS-----------ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~--~~~~~~~~~-----------~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++.+...... .....+.++ ...+.+.+...++.+|.+++++
T Consensus 347 li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 347 LVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred EEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence 9987554211 011112222 2233556666667778877765
No 427
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=77.93 E-value=37 Score=28.97 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=55.8
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---------------CCCcEEEEcccCCCCCCCCC
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---------------IPQLKYLQMDVRDMSFFEDE 72 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------~~~v~~~~~d~~~~~~~~~~ 72 (210)
+|-=||+|. ..++..+++.|. +|+++|.++..++..++.... ..++.+. .|.... -.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~----~~ 75 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDA----IR 75 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHH----Hh
Confidence 466678875 244445555676 899999999888765532100 0112211 111110 12
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
..|+|+..-.-..-..+.........+++.+.+.+++|-.++..+...|.
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pg 125 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPG 125 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCC
Confidence 46777653221100001112245677778888888888776655433343
No 428
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=77.92 E-value=24 Score=26.92 Aligned_cols=32 Identities=16% Similarity=0.030 Sum_probs=24.6
Q ss_pred CCCEEEeCCCC--chhHHHHHHcCCCcEEEEeCC
Q 028385 8 TRDTCRRAAPS--IVMSEDMVKDGYEDIVNIDIS 39 (210)
Q Consensus 8 ~~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s 39 (210)
..+||=+|||. +..+..++..|..+++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899999985 345566666788889999977
No 429
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=77.54 E-value=35 Score=27.97 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=53.0
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEE---cccCC-C-CCCCCCcccEEEECC
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ---MDVRD-M-SFFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~---~d~~~-~-~~~~~~~fD~Vi~~~ 81 (210)
.+||=.|+|. |..+..+++. +...+++++.++...+.+++.-. . .++. .+... + .....+.+|+|+...
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga--~--~~i~~~~~~~~~~l~~~~~~~~~d~vid~~ 249 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA--T--IVLDPTEVDVVAEVRKLTGGGGVDVSFDCA 249 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC--C--EEECCCccCHHHHHHHHhCCCCCCEEEECC
Confidence 4566677542 4444445554 54478999999888887755321 1 1111 11100 0 101234599998642
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. ....+..+.+.|+++|.++.+..
T Consensus 250 g-------------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 250 G-------------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred C-------------CHHHHHHHHHhccCCCEEEEEcc
Confidence 1 12356778889999999877654
No 430
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=77.51 E-value=39 Score=27.85 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=51.7
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-------C-CCCCCCcccEEE
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-------M-SFFEDESFDAVI 78 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-------~-~~~~~~~fD~Vi 78 (210)
.+||=.|+|. |..+..+++. +.+++++++.++.-.+.+++.-. . .++..+-.+ + .....+.+|+|+
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~--~--~vi~~~~~~~~~~~~~i~~~~~~~~~d~vi 254 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGA--D--ATIDIDELPDPQRRAIVRDITGGRGADVVI 254 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC--C--eEEcCcccccHHHHHHHHHHhCCCCCcEEE
Confidence 4577777642 4444555555 44479999988887776653211 1 111111000 0 001234699998
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.... ....+....+.|+++|+++.+.
T Consensus 255 d~~g-------------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 255 EASG-------------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred ECCC-------------ChHHHHHHHHHhccCCEEEEEc
Confidence 6321 1234667788999999997664
No 431
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=77.22 E-value=9.4 Score=30.88 Aligned_cols=91 Identities=9% Similarity=-0.013 Sum_probs=54.5
Q ss_pred CCEEEeCC--CCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEECCc
Q 028385 9 RDTCRRAA--PSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDKGT 82 (210)
Q Consensus 9 ~~vLdiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~~~ 82 (210)
.+||=.|+ |.|..+..+++....++++++.+++-.+.+++.-. . .++...-.+.. ....+.+|+|+..
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga--~--~vi~~~~~~~~~~v~~~~~~gvd~vld~-- 218 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGF--D--AVFNYKTVSLEEALKEAAPDGIDCYFDN-- 218 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC--C--EEEeCCCccHHHHHHHHCCCCcEEEEEC--
Confidence 45777764 34666666776633379999999888888766321 1 12211111110 0223568999863
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ .. ..+....+.|+++|.++...
T Consensus 219 ---~-------g~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 219 ---V-------GG--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred ---C-------CH--HHHHHHHHhhccCCEEEEEc
Confidence 2 11 35678889999999997653
No 432
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.01 E-value=5.1 Score=33.03 Aligned_cols=88 Identities=20% Similarity=0.129 Sum_probs=49.5
Q ss_pred CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc--ccCCCCCCCCCcccEEEECCccchhccCCCch
Q 028385 17 PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM--DVRDMSFFEDESFDAVIDKGTLDSLMCGTNAP 93 (210)
Q Consensus 17 G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~--d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~ 93 (210)
|-|.++..+++. |. +|+++|-+..--+.+-+++... .|+.. |-..+. --.++.|.++..-.
T Consensus 192 GLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~LGAd---~fv~~~~d~d~~~-~~~~~~dg~~~~v~----------- 255 (360)
T KOG0023|consen 192 GLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSLGAD---VFVDSTEDPDIMK-AIMKTTDGGIDTVS----------- 255 (360)
T ss_pred ccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhcCcc---eeEEecCCHHHHH-HHHHhhcCcceeee-----------
Confidence 478898888887 55 9999999975555555544221 12211 111111 11223343332111
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 94 ISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 94 ~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.-....+..+.++||++|.++++....
T Consensus 256 ~~a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 256 NLAEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eccccchHHHHHHhhcCCEEEEEeCcC
Confidence 002233666788999999999887654
No 433
>PRK07774 short chain dehydrogenase; Provisional
Probab=76.68 E-value=32 Score=26.47 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=44.5
Q ss_pred CCEEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCC---------CCCcc
Q 028385 9 RDTCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~f 74 (210)
.++|=.|+ +|.++..++ +.+. +|+.++.++...+...+.... ..++.++.+|+.+.... .-+..
T Consensus 7 k~vlItGa-sg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 84 (250)
T PRK07774 7 KVAIVTGA-AGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI 84 (250)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 45777774 455555554 4465 899999987665544443322 23567888898875300 01358
Q ss_pred cEEEECCcc
Q 028385 75 DAVIDKGTL 83 (210)
Q Consensus 75 D~Vi~~~~l 83 (210)
|+|+.+...
T Consensus 85 d~vi~~ag~ 93 (250)
T PRK07774 85 DYLVNNAAI 93 (250)
T ss_pred CEEEECCCC
Confidence 999986653
No 434
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=76.53 E-value=31 Score=27.82 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=51.3
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+||=.|+|. |.....+++. |. ++++++.+++..+.+++ +.. . .. .+... . ...+.+|+|+....
T Consensus 156 g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~-~g~-~---~~-~~~~~-~-~~~~~~d~vid~~g--- 223 (319)
T cd08242 156 GDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR-LGV-E---TV-LPDEA-E-SEGGGFDVVVEATG--- 223 (319)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH-cCC-c---EE-eCccc-c-ccCCCCCEEEECCC---
Confidence 34677777532 3333334444 55 69999999988888876 311 1 11 11111 1 23456999986321
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
-...+....+.|+++|.+++.
T Consensus 224 ----------~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 224 ----------SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ----------ChHHHHHHHHHhhcCCEEEEE
Confidence 123466778889999999764
No 435
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=76.53 E-value=27 Score=28.38 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=53.8
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---C------CcEEEEcccCCCCCCCCCcccEE
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---P------QLKYLQMDVRDMSFFEDESFDAV 77 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~------~v~~~~~d~~~~~~~~~~~fD~V 77 (210)
++|.=||+|. +.++..+++.+. +|+.+|.++..++..++..... + ++.+ ..|..+ .-...|+|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~D~v 75 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAE----ALADADLI 75 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHH----HHhCCCEE
Confidence 3677788874 344444555566 7999999998877766542110 0 1111 111111 11346888
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+..-. ......++..+...++++..++.++
T Consensus 76 i~~v~----------~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 76 LVAVP----------SQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred EEeCC----------HHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 76322 2456777788888888887765543
No 436
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=76.46 E-value=25 Score=29.79 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=43.2
Q ss_pred CCCCEEEeCCCCchhHHHHHH----cCCCcEEEEeCCHHHHHH---HHHhhcCCCCcEEEEcccCCCCC----CCC--Cc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVK----DGYEDIVNIDISSVAIDM---MKMKYEEIPQLKYLQMDVRDMSF----FED--ES 73 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s~~~~~~---a~~~~~~~~~v~~~~~d~~~~~~----~~~--~~ 73 (210)
...+||=.| |+|.++..+++ .+. +|++++.++.-... ..+.....++++++.+|+.+... +.+ ..
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~ 136 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP 136 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 345788887 57776666654 466 89999987643221 11111122578899999987431 111 15
Q ss_pred ccEEEEC
Q 028385 74 FDAVIDK 80 (210)
Q Consensus 74 fD~Vi~~ 80 (210)
+|+|+..
T Consensus 137 ~D~Vi~~ 143 (390)
T PLN02657 137 VDVVVSC 143 (390)
T ss_pred CcEEEEC
Confidence 8999864
No 437
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=76.08 E-value=14 Score=30.21 Aligned_cols=92 Identities=16% Similarity=0.081 Sum_probs=55.3
Q ss_pred CCEEEeCC--CCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEE-c---ccCC-CCCCCCCcccEEEECC
Q 028385 9 RDTCRRAA--PSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ-M---DVRD-MSFFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~-~---d~~~-~~~~~~~~fD~Vi~~~ 81 (210)
.+||=.|+ |-|..+..+++.-..++++++.+++-.+.+++.... . .++. . +... +.....+.+|+|+..
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~i~~~~~~gvd~v~d~- 228 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF-D--DAFNYKEEPDLDAALKRYFPNGIDIYFDN- 228 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-c--eeEEcCCcccHHHHHHHhCCCCcEEEEEC-
Confidence 46777776 346666667766333799999898888877763321 1 1121 1 1111 000112568999863
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. .. ..+.+..+.|+++|.++...
T Consensus 229 ----~-------g~--~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 ----V-------GG--KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred ----C-------CH--HHHHHHHHHhccCcEEEEec
Confidence 2 11 45678889999999997654
No 438
>PRK06196 oxidoreductase; Provisional
Probab=76.06 E-value=40 Score=27.29 Aligned_cols=70 Identities=10% Similarity=0.145 Sum_probs=44.9
Q ss_pred CCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC-------C--CCCccc
Q 028385 9 RDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-------F--EDESFD 75 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-------~--~~~~fD 75 (210)
..||=.|++. .++..+ ++.+. +|++++.++...+.+.+.. .++.++.+|+.+... . ..+..|
T Consensus 27 k~vlITGasg-gIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD 101 (315)
T PRK06196 27 KTAIVTGGYS-GLGLETTRALAQAGA-HVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLDSGRRID 101 (315)
T ss_pred CEEEEeCCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHhcCCCCC
Confidence 4678778654 444444 44566 7999999887665544433 347888999887530 0 125689
Q ss_pred EEEECCcc
Q 028385 76 AVIDKGTL 83 (210)
Q Consensus 76 ~Vi~~~~l 83 (210)
+++.+...
T Consensus 102 ~li~nAg~ 109 (315)
T PRK06196 102 ILINNAGV 109 (315)
T ss_pred EEEECCCC
Confidence 99987654
No 439
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=75.92 E-value=16 Score=30.40 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=53.0
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc-c----cCC-CCCCCCCcccEEEEC
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-D----VRD-MSFFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~-d----~~~-~~~~~~~~fD~Vi~~ 80 (210)
.+||=.|+|. |..+..+++. +..+|+++|.++.-.+.+++.-. . .++.. + ... +.....+.+|+|+..
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga--~--~~i~~~~~~~~~~~~~~~~~~~g~d~vid~ 261 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGA--T--DFINPKDSDKPVSEVIREMTGGGVDYSFEC 261 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC--C--cEeccccccchHHHHHHHHhCCCCCEEEEC
Confidence 4677778753 4444555555 55479999999988888754321 1 11111 0 000 000112468999863
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
.. ....+.+..+.|+++ |.++++..
T Consensus 262 ~g-------------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 262 TG-------------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CC-------------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 21 123567778888886 99877654
No 440
>PRK05854 short chain dehydrogenase; Provisional
Probab=75.73 E-value=24 Score=28.74 Aligned_cols=75 Identities=8% Similarity=0.119 Sum_probs=46.2
Q ss_pred CCCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCCCC---------CCCC
Q 028385 8 TRDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSF---------FEDE 72 (210)
Q Consensus 8 ~~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~~~---------~~~~ 72 (210)
...+|=.|++.|. .+..+++.|. +|+.+..+.+-.+.+.+.... ..++.++.+|+.+... -..+
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 3456777765543 2233344566 899999887766655544321 1357889999887530 1124
Q ss_pred cccEEEECCcc
Q 028385 73 SFDAVIDKGTL 83 (210)
Q Consensus 73 ~fD~Vi~~~~l 83 (210)
..|+++.+...
T Consensus 93 ~iD~li~nAG~ 103 (313)
T PRK05854 93 PIHLLINNAGV 103 (313)
T ss_pred CccEEEECCcc
Confidence 68999987654
No 441
>PRK07680 late competence protein ComER; Validated
Probab=75.21 E-value=31 Score=27.48 Aligned_cols=89 Identities=11% Similarity=0.193 Sum_probs=51.2
Q ss_pred CEEEeCCCC--chhHHHHHHcCC---CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGY---EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
+|.=||||. +.+...+.+.+. .+++..|.++...+...++. +.+.+. .|.... -...|+|+..
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~---~g~~~~-~~~~~~----~~~aDiVila---- 69 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY---PGIHVA-KTIEEV----ISQSDLIFIC---- 69 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc---CCeEEE-CCHHHH----HHhCCEEEEe----
Confidence 466788776 334455555552 36899999987666554432 233322 222221 1246888752
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+ +......+++++...++++..++.+
T Consensus 70 -v-----~p~~~~~vl~~l~~~l~~~~~iis~ 95 (273)
T PRK07680 70 -V-----KPLDIYPLLQKLAPHLTDEHCLVSI 95 (273)
T ss_pred -c-----CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 2 2355677888888888887755433
No 442
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=75.05 E-value=14 Score=32.97 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=58.7
Q ss_pred CEEEeCCCCchhHHHHHHc----CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC----CCCCCcccEEE
Q 028385 10 DTCRRAAPSIVMSEDMVKD----GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS----FFEDESFDAVI 78 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~----~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~----~~~~~~fD~Vi 78 (210)
+||=-| |+|+++..+.++ +.++++.+|.++..+......+... ..+.+..+|..+.. .+.+-+.|+|+
T Consensus 252 ~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~Vf 330 (588)
T COG1086 252 TVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVF 330 (588)
T ss_pred EEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEE
Confidence 455444 566666666553 5568999999999998888777543 56889999999853 25566799999
Q ss_pred ECCccchhccCC
Q 028385 79 DKGTLDSLMCGT 90 (210)
Q Consensus 79 ~~~~l~~~~~~~ 90 (210)
--..+-|++-.+
T Consensus 331 HAAA~KHVPl~E 342 (588)
T COG1086 331 HAAALKHVPLVE 342 (588)
T ss_pred EhhhhccCcchh
Confidence 988888885433
No 443
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=74.98 E-value=6.7 Score=28.17 Aligned_cols=37 Identities=8% Similarity=-0.053 Sum_probs=23.6
Q ss_pred EeCCCCc--hhHHHHH--Hc-CCCcEEEEeCCHHHHHHHHHh
Q 028385 13 RRAAPSI--VMSEDMV--KD-GYEDIVNIDISSVAIDMMKMK 49 (210)
Q Consensus 13 diGcG~G--~~~~~l~--~~-~~~~v~~vD~s~~~~~~a~~~ 49 (210)
|||+..| .....+. .. +..+++++|.++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5544443 22 345799999999999988888
No 444
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=74.86 E-value=17 Score=25.81 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=52.4
Q ss_pred EEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CC--cEEE-EcccCCCCCCCCCcccEEEECCcc
Q 028385 11 TCRRAAPS-I-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQ--LKYL-QMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 11 vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--v~~~-~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
|+=+|+|. | .++..|.+.+. +|+.++-++ -++..++.--.. .. ..+. .......+ ...+.+|+|+..-=
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~viv~vK- 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPS-ADAGPYDLVIVAVK- 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHG-HHHSTESEEEE-SS-
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcch-hccCCCcEEEEEec-
Confidence 45567765 3 33333444444 899999888 555544332100 11 0011 01111111 23568999886421
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
-.+...+++.+.+.+.++..+++..-+
T Consensus 77 ---------a~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 77 ---------AYQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp ---------GGGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred ---------ccchHHHHHHHhhccCCCcEEEEEeCC
Confidence 135677899999999999887666533
No 445
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=74.59 E-value=24 Score=27.65 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=24.1
Q ss_pred CCCEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCH
Q 028385 8 TRDTCRRAAPS-I-VMSEDMVKDGYEDIVNIDISS 40 (210)
Q Consensus 8 ~~~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~ 40 (210)
..+||=+|||. | ..+..|++.|..+++.+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 46899999984 4 444556667888899998664
No 446
>PRK08339 short chain dehydrogenase; Provisional
Probab=74.43 E-value=23 Score=27.93 Aligned_cols=74 Identities=9% Similarity=0.085 Sum_probs=47.2
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCC----C----CCCccc
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF----F----EDESFD 75 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~----~----~~~~fD 75 (210)
..+|-.|++.|. ++..+++.|. +|+.++.++.-++...+.... ..++.++.+|+.+... + .-+..|
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD 87 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEPD 87 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCCc
Confidence 456777776553 3344555676 799999998777666554422 1467888999887530 0 124689
Q ss_pred EEEECCcc
Q 028385 76 AVIDKGTL 83 (210)
Q Consensus 76 ~Vi~~~~l 83 (210)
+++.+...
T Consensus 88 ~lv~nag~ 95 (263)
T PRK08339 88 IFFFSTGG 95 (263)
T ss_pred EEEECCCC
Confidence 88876543
No 447
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=74.21 E-value=17 Score=30.46 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=49.6
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHH-HHHHHHhhcCCCCcEEEE-cccCCCCCCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVA-IDMMKMKYEEIPQLKYLQ-MDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~-~~~a~~~~~~~~~v~~~~-~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..||-.|+|. |..+..+++. |. ++++++.+++. .+.+++.-. . .++. .+........ +.+|+|+....
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa--~--~~i~~~~~~~v~~~~-~~~D~vid~~G-- 251 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGA--D--SFLVTTDSQKMKEAV-GTMDFIIDTVS-- 251 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCC--c--EEEcCcCHHHHHHhh-CCCcEEEECCC--
Confidence 4577778754 5555566665 54 78899877554 444432211 1 1111 0101111011 24899986321
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+.+..+.+++||.++.+..
T Consensus 252 -----------~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 -----------AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred -----------cHHHHHHHHHhhcCCCEEEEEcc
Confidence 12346777889999999987654
No 448
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=74.18 E-value=8.4 Score=31.45 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=60.1
Q ss_pred EEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 35 NIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 35 ~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
=+...+...+.++.+. .+|.++.+|+..+- .-+-+..|.++...+=+++ +......+..++.|-+.+|.++
T Consensus 291 P~yl~~~~YEsir~n~---~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwm-----td~qln~lws~isrta~~gA~V 362 (414)
T COG5379 291 PAYLDEGVYESIRQNL---RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWM-----TDGQLNSLWSEISRTAEAGARV 362 (414)
T ss_pred ChhhchhhHHHHHhhh---hheeeecccHHHHhccCCCCCcceEEEecchhhc-----ccchHHHHHHHHhhccCCCcEE
Confidence 3455667777777666 56888999987753 2367789999988887777 5578899999999999999999
Q ss_pred EEEEcC
Q 028385 114 MLITYG 119 (210)
Q Consensus 114 ~~~~~~ 119 (210)
++-+..
T Consensus 363 ifRtaa 368 (414)
T COG5379 363 IFRTAA 368 (414)
T ss_pred EEeccc
Confidence 987654
No 449
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=74.14 E-value=40 Score=27.07 Aligned_cols=78 Identities=10% Similarity=0.304 Sum_probs=55.0
Q ss_pred CCCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCC-------CCC--Cc
Q 028385 8 TRDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSF-------FED--ES 73 (210)
Q Consensus 8 ~~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~-------~~~--~~ 73 (210)
..++|=-|+-+| .++..+++++. +++.+--+.+-++...+..+.. -.+.++..|+.+... ... ..
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~ 84 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGP 84 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCc
Confidence 346777777555 34455566677 8999999999888888777543 357889999888541 112 37
Q ss_pred ccEEEECCccchh
Q 028385 74 FDAVIDKGTLDSL 86 (210)
Q Consensus 74 fD~Vi~~~~l~~~ 86 (210)
+|+.|.+..+-..
T Consensus 85 IdvLVNNAG~g~~ 97 (265)
T COG0300 85 IDVLVNNAGFGTF 97 (265)
T ss_pred ccEEEECCCcCCc
Confidence 9999998776554
No 450
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.99 E-value=23 Score=27.77 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=47.9
Q ss_pred CCCCEEEeCCCCchhHHHHHH----cCCCcEEEEeCC-HHHHHHHHHhhcCCCCcEEEEcccCCCC----------CCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVK----DGYEDIVNIDIS-SVAIDMMKMKYEEIPQLKYLQMDVRDMS----------FFED 71 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s-~~~~~~a~~~~~~~~~v~~~~~d~~~~~----------~~~~ 71 (210)
....||-.||..|.++..+++ .|+ .|+++-.+ +.|-+.+.+ ..+.....|+.+-. .+++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~-----~gl~~~kLDV~~~~~V~~v~~evr~~~~ 79 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQ-----FGLKPYKLDVSKPEEVVTVSGEVRANPD 79 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHh-----hCCeeEEeccCChHHHHHHHHHHhhCCC
Confidence 445799999999987777765 466 78887765 345454433 23556666666532 3678
Q ss_pred CcccEEEECCccc
Q 028385 72 ESFDAVIDKGTLD 84 (210)
Q Consensus 72 ~~fD~Vi~~~~l~ 84 (210)
++.|+.+.+..-.
T Consensus 80 Gkld~L~NNAG~~ 92 (289)
T KOG1209|consen 80 GKLDLLYNNAGQS 92 (289)
T ss_pred CceEEEEcCCCCC
Confidence 8999998876543
No 451
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=73.81 E-value=46 Score=26.88 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=50.1
Q ss_pred CCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 9 RDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
.+||=.|||. |..+..+++....+++.++.++...+.+++ .. ++.. .+... ...+.+|+++....
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g----~~~~-~~~~~---~~~~~vD~vi~~~~----- 234 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-LG----ADWA-GDSDD---LPPEPLDAAIIFAP----- 234 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-hC----CcEE-eccCc---cCCCcccEEEEcCC-----
Confidence 4566666653 333344445433489999888877776643 21 1111 11111 12346898875311
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
....+.++.+.|+++|.++...
T Consensus 235 --------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 --------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred --------cHHHHHHHHHHhhcCCEEEEEc
Confidence 1246888899999999998654
No 452
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=73.59 E-value=19 Score=29.36 Aligned_cols=92 Identities=12% Similarity=0.157 Sum_probs=51.9
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-C-CCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-F-FEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~-~~~~~fD~Vi~~~~l 83 (210)
..+||=.|+|. |..+..+++. +. +++.++.++.-.+.+++.-. . .++...-.+.. . .....+|+++....
T Consensus 164 ~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~--~--~~i~~~~~~~~~~~~~~~~~d~vi~~~g- 237 (333)
T cd08296 164 GDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGA--H--HYIDTSKEDVAEALQELGGAKLILATAP- 237 (333)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCC--c--EEecCCCccHHHHHHhcCCCCEEEECCC-
Confidence 34677778543 4444555555 54 79999999887777754211 1 11111111110 0 01134898885311
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
....+....+.|+++|.++...
T Consensus 238 ------------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 238 ------------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred ------------chHHHHHHHHHcccCCEEEEEe
Confidence 1235777888999999987664
No 453
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=73.51 E-value=39 Score=27.66 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=59.9
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cCCCC-cEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EEIPQ-LKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~-v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
++|+=+|+|. |.++..|++.+ ..|+.+-.++. ++..++.- ....+ ...... ....+ .....+|+|+..-=
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~-~~~~~-~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVV-AATDA-EALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhCCeEEecCCCccccccc-cccCh-hhcCCCCEEEEEec
Confidence 4788899985 66667777777 57777777766 56555532 01011 000100 00111 22347999886311
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
--+...+++.+...+++...+++..-+-.+
T Consensus 77 ----------a~q~~~al~~l~~~~~~~t~vl~lqNG~g~ 106 (307)
T COG1893 77 ----------AYQLEEALPSLAPLLGPNTVVLFLQNGLGH 106 (307)
T ss_pred ----------cccHHHHHHHhhhcCCCCcEEEEEeCCCcH
Confidence 135688899999999999988777654433
No 454
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=73.50 E-value=14 Score=35.58 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=60.7
Q ss_pred CCCEEEeCCCC-chhHH-HHHHcCCC-------------cEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCC-
Q 028385 8 TRDTCRRAAPS-IVMSE-DMVKDGYE-------------DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED- 71 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~-~l~~~~~~-------------~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~- 71 (210)
..+|+=||||. |.... .+++.+.. .|+..|.++...+.+.+.. +++..+..|+.+...+..
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---~~~~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---ENAEAVQLDVSDSESLLKY 645 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---CCCceEEeecCCHHHHHHh
Confidence 45899999984 44433 33443322 3888999987666555443 466667776655321111
Q ss_pred -CcccEEEECCccc-hhc-------cCC--CchHHHHHHHHHHHHhccCCcEEEEEEcC-Cch
Q 028385 72 -ESFDAVIDKGTLD-SLM-------CGT--NAPISASQMLGEVSRLLKPGGIYMLITYG-DPK 122 (210)
Q Consensus 72 -~~fD~Vi~~~~l~-~~~-------~~~--~~~~~~~~~l~~i~r~LkpgG~~~~~~~~-~p~ 122 (210)
...|+|++..... |.. .+. ...........++....+.-|..++..++ .|.
T Consensus 646 v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDPG 708 (1042)
T PLN02819 646 VSQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLDPG 708 (1042)
T ss_pred hcCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCccCHH
Confidence 3489998854321 110 000 00001122334455556667888788877 444
No 455
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=73.29 E-value=17 Score=30.22 Aligned_cols=95 Identities=9% Similarity=0.116 Sum_probs=53.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc-----cCC-CCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-----VRD-MSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~fD~Vi~ 79 (210)
..+||=.|+|. |..+..+++. +..+++++|.+++-.+.+++.-. . .++..+ ... +.....+.+|+|+.
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga--~--~~i~~~~~~~~~~~~v~~~~~~~~d~vid 263 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV--T--EFVNPKDHDKPVQEVIAEMTGGGVDYSFE 263 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC--c--eEEcccccchhHHHHHHHHhCCCCCEEEE
Confidence 34677778643 4444555554 54479999999998888865321 1 111111 000 00012236899986
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEcC
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITYG 119 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~~ 119 (210)
.-. ....+....+.+++| |.+++....
T Consensus 264 ~~G-------------~~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 264 CTG-------------NIDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred CCC-------------ChHHHHHHHHHhhcCCCEEEEECcC
Confidence 321 123466677788996 998776543
No 456
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=73.10 E-value=7.6 Score=27.50 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=44.0
Q ss_pred CCCCEEEeCCCCc--hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSI--VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...++|=+|+|.- .....+...+..+++.+..+.+-.+...+.... .++.+. ++.++. -.-..+|+|++.-...
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~-~~~~~~--~~~~~~-~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG-VNIEAI--PLEDLE-EALQEADIVINATPSG 86 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG-CSEEEE--EGGGHC-HHHHTESEEEE-SSTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc-ccccee--eHHHHH-HHHhhCCeEEEecCCC
Confidence 4568999999752 233444556777899999998766655555411 233333 334432 1234699999865443
No 457
>PRK05855 short chain dehydrogenase; Validated
Probab=73.04 E-value=44 Score=29.36 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=46.8
Q ss_pred CCCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCC---------CCCCc
Q 028385 8 TRDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF---------FEDES 73 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~---------~~~~~ 73 (210)
...+|=+|+. |.++..+ ++.|. +|+.++.+....+...+.... ..++.+..+|+.+... -..+.
T Consensus 315 ~~~~lv~G~s-~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 315 GKLVVVTGAG-SGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CCEEEEECCc-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 3457777764 4444444 44566 799999998776655444422 2467888999887430 01246
Q ss_pred ccEEEECCcc
Q 028385 74 FDAVIDKGTL 83 (210)
Q Consensus 74 fD~Vi~~~~l 83 (210)
.|+++.+...
T Consensus 393 id~lv~~Ag~ 402 (582)
T PRK05855 393 PDIVVNNAGI 402 (582)
T ss_pred CcEEEECCcc
Confidence 8999987655
No 458
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=73.04 E-value=23 Score=30.25 Aligned_cols=106 Identities=15% Similarity=0.229 Sum_probs=58.0
Q ss_pred CCEEEeCCCC-ch-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcE-----------E-EEcccCCCCCCCCC
Q 028385 9 RDTCRRAAPS-IV-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLK-----------Y-LQMDVRDMSFFEDE 72 (210)
Q Consensus 9 ~~vLdiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~-----------~-~~~d~~~~~~~~~~ 72 (210)
.+|-=+|-|. |. ++..+++.|+ +|+|+|+++..++...+..... +... + ...|...+ .
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-----~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-----K 83 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-----c
Confidence 5666676665 32 2334455677 8999999999888765432100 0000 0 01111111 1
Q ss_pred cccEEEE--CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 73 SFDAVID--KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 73 ~fD~Vi~--~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.-|+++. --.+.. ..+....-..++.+.+.+.||+|-.+++-+...|.
T Consensus 84 ~~dv~iI~VPTPl~~--~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PG 133 (436)
T COG0677 84 ECDVFIICVPTPLKK--YREPDLSYVESAARSIAPVLKKGDLVILESTTPPG 133 (436)
T ss_pred cCCEEEEEecCCcCC--CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 3454332 111111 12344566788999999999999888665555554
No 459
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=73.04 E-value=9.7 Score=32.27 Aligned_cols=44 Identities=7% Similarity=0.095 Sum_probs=31.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY 50 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~ 50 (210)
....+||-|.+|..+....+.+.+. +|++||.||......+=+.
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~~P~-~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLAGPK-RIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhcCCc-eEEEEeCCHHHHHHHHHHH
Confidence 3445799997776666666555554 9999999998877766443
No 460
>PRK07024 short chain dehydrogenase; Provisional
Probab=72.99 E-value=21 Score=27.83 Aligned_cols=73 Identities=15% Similarity=0.167 Sum_probs=46.1
Q ss_pred CCEEEeCCCCchhHHH----HHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC---------CCCCccc
Q 028385 9 RDTCRRAAPSIVMSED----MVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDESFD 75 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~----l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~fD 75 (210)
.+||=.|+.+ .++.. +++.+. +|+.++.+++.++...+......++.++.+|+.+... -..+..|
T Consensus 3 ~~vlItGas~-gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 3 LKVFITGASS-GIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred CEEEEEcCCc-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 3577777644 34433 444566 8999999987776655544322368889999987420 0123579
Q ss_pred EEEECCcc
Q 028385 76 AVIDKGTL 83 (210)
Q Consensus 76 ~Vi~~~~l 83 (210)
+++.+...
T Consensus 81 ~lv~~ag~ 88 (257)
T PRK07024 81 VVIANAGI 88 (257)
T ss_pred EEEECCCc
Confidence 99987654
No 461
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=72.89 E-value=6.2 Score=28.71 Aligned_cols=97 Identities=12% Similarity=0.040 Sum_probs=47.9
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC-CC--CCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-SF--FEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~-~~--~~~~~fD~Vi~~~~l~ 84 (210)
+-|||+|-|+|..-..+.+. +..+++.+|-.-.+--.+. -+.-.++.+|+.+. +. +-....-++.+..
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~-----P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~--- 101 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST-----PPEEDLILGDIRETLPALARFGAGAALAHADI--- 101 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG--------GGGEEES-HHHHHHHHHHH-S-EEEEEE-----
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC-----CchHheeeccHHHHhHHHHhcCCceEEEEeec---
Confidence 67999999999999888876 6668999996432111100 03346788888773 20 1112222332221
Q ss_pred hhccCCCch--HHHHHHHHHHHHhccCCcEEEE
Q 028385 85 SLMCGTNAP--ISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 85 ~~~~~~~~~--~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
.++.... .....+-.-+..+|.|||.++.
T Consensus 102 --G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 102 --GTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp ----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred --CCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 1111111 1233344557788999998853
No 462
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=72.80 E-value=16 Score=31.42 Aligned_cols=89 Identities=12% Similarity=0.124 Sum_probs=51.2
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|+=+|+|. |......++. +. +|+.+|.++.....+... ...+ .++... -...|+|+..-.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~-----G~~v--~~l~ea----l~~aDVVI~aTG-- 276 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMD-----GFRV--MTMEEA----AELGDIFVTATG-- 276 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhc-----CCEe--cCHHHH----HhCCCEEEECCC--
Confidence 345788899875 3333333333 55 899999998654443321 1221 122221 125799986321
Q ss_pred hhccCCCchHHHHHHHH-HHHHhccCCcEEEEEEcCC
Q 028385 85 SLMCGTNAPISASQMLG-EVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~-~i~r~LkpgG~~~~~~~~~ 120 (210)
+ ..++. +..+.+|+|++++.+....
T Consensus 277 ----------~-~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 277 ----------N-KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred ----------C-HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 1 22344 6788899999987765543
No 463
>PRK06182 short chain dehydrogenase; Validated
Probab=72.54 E-value=45 Score=26.22 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=42.7
Q ss_pred CCEEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCCccc
Q 028385 9 RDTCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDESFD 75 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~~fD 75 (210)
..+|=.|++. .++..++ +.+. +|++++.+++-++.... .++.++.+|+.+... + ..+..|
T Consensus 4 k~vlItGasg-giG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id 76 (273)
T PRK06182 4 KVALVTGASS-GIGKATARRLAAQGY-TVYGAARRVDKMEDLAS-----LGVHPLSLDVTDEASIKAAVDTIIAEEGRID 76 (273)
T ss_pred CEEEEECCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-----CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 4677777644 3444444 4465 89999988876544322 247788889877430 0 124689
Q ss_pred EEEECCcc
Q 028385 76 AVIDKGTL 83 (210)
Q Consensus 76 ~Vi~~~~l 83 (210)
+++.+...
T Consensus 77 ~li~~ag~ 84 (273)
T PRK06182 77 VLVNNAGY 84 (273)
T ss_pred EEEECCCc
Confidence 99987654
No 464
>PRK07326 short chain dehydrogenase; Provisional
Probab=72.43 E-value=18 Score=27.66 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=45.5
Q ss_pred CCEEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCCccc
Q 028385 9 RDTCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDESFD 75 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~~fD 75 (210)
..||-.|+ +|.++..++ +++. +|++++.++...+...+......++.++.+|+.+... + .-+.+|
T Consensus 7 ~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 84 (237)
T PRK07326 7 KVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD 84 (237)
T ss_pred CEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 46888885 555555554 4466 7999999887666555444322567888889876420 0 013689
Q ss_pred EEEECCc
Q 028385 76 AVIDKGT 82 (210)
Q Consensus 76 ~Vi~~~~ 82 (210)
+|+....
T Consensus 85 ~vi~~ag 91 (237)
T PRK07326 85 VLIANAG 91 (237)
T ss_pred EEEECCC
Confidence 8887643
No 465
>PRK06139 short chain dehydrogenase; Provisional
Probab=72.42 E-value=29 Score=28.58 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=47.0
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCC---C------CCCccc
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF---F------EDESFD 75 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~---~------~~~~fD 75 (210)
..||=.|+..|. ++..+++.|. +|+.++.+++.++...+..... .++.++.+|+.+... + ..+.+|
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 86 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRID 86 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 467777775542 2333445566 7999999988877665554322 456778888876320 0 125689
Q ss_pred EEEECCcc
Q 028385 76 AVIDKGTL 83 (210)
Q Consensus 76 ~Vi~~~~l 83 (210)
+++.+...
T Consensus 87 ~lVnnAG~ 94 (330)
T PRK06139 87 VWVNNVGV 94 (330)
T ss_pred EEEECCCc
Confidence 99987654
No 466
>PRK08507 prephenate dehydrogenase; Validated
Probab=72.17 E-value=33 Score=27.39 Aligned_cols=84 Identities=6% Similarity=0.011 Sum_probs=49.8
Q ss_pred CEEEeCCCC--chhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
+|.=||+|. +.++..+.+.+. .+++++|.++...+.+++.- -+.. ..+... .. + .|+|+..-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g----~~~~-~~~~~~---~~-~-aD~Vilav----- 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELG----LVDE-IVSFEE---LK-K-CDVIFLAI----- 66 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCC----CCcc-cCCHHH---Hh-c-CCEEEEeC-----
Confidence 466778775 455555655554 36999999998877765321 1111 112211 11 2 79888643
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
+......++.++.. ++++..++
T Consensus 67 -----p~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 67 -----PVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred -----cHHHHHHHHHHHhc-cCCCCEEE
Confidence 33556677788888 88776553
No 467
>PRK10083 putative oxidoreductase; Provisional
Probab=71.96 E-value=31 Score=28.04 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=52.3
Q ss_pred CCEEEeCCCC-chhHHHHHH-c-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-CCCCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPS-IVMSEDMVK-D-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~-~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~ 84 (210)
.+||=.|+|. |..+..+++ . |...++++|.++.-.+.+++.-... -+.....+... +. -....+|+|+....
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~-~i~~~~~~~~~~~~-~~g~~~d~vid~~g-- 237 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW-VINNAQEPLGEALE-EKGIKPTLIIDAAC-- 237 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE-EecCccccHHHHHh-cCCCCCCEEEECCC--
Confidence 4677788643 444455555 2 6656888999998888776542110 00111111111 11 01123567775211
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+.+..+.|+++|.++.+..
T Consensus 238 -----------~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 238 -----------HPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred -----------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 12357778889999999987654
No 468
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=71.95 E-value=21 Score=29.00 Aligned_cols=88 Identities=18% Similarity=0.096 Sum_probs=51.3
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
+|-=||+|. +.++..+++.+. +|++.|.+++.++.+.+.. ... ..+..++. ..-..-|+|+..-.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g-----~~~-~~s~~~~~-~~~~~~dvIi~~vp----- 68 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDR-----TTG-VANLRELS-QRLSAPRVVWVMVP----- 68 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcC-----Ccc-cCCHHHHH-hhcCCCCEEEEEcC-----
Confidence 466678765 345555666666 8999999998877766531 110 11222211 01123588876322
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
......+++++...|++|-.++-
T Consensus 69 -----~~~~~~v~~~l~~~l~~g~ivid 91 (298)
T TIGR00872 69 -----HGIVDAVLEELAPTLEKGDIVID 91 (298)
T ss_pred -----chHHHHHHHHHHhhCCCCCEEEE
Confidence 13556777888888888865533
No 469
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=71.71 E-value=42 Score=25.57 Aligned_cols=32 Identities=6% Similarity=0.155 Sum_probs=24.4
Q ss_pred CCCEEEeCCCC--chhHHHHHHcCCCcEEEEeCC
Q 028385 8 TRDTCRRAAPS--IVMSEDMVKDGYEDIVNIDIS 39 (210)
Q Consensus 8 ~~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s 39 (210)
..+|+=+|||. +..+..+++.|..+++.+|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45799999985 345556666788789999988
No 470
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=71.53 E-value=55 Score=26.79 Aligned_cols=93 Identities=20% Similarity=0.190 Sum_probs=53.0
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC----CCCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD----MSFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~----~~~~~~~~fD~Vi~~~ 81 (210)
..+||-.|+|. |..+..+++. +...++.++.++.-.+.+++... . .+....-.. +.....+.+|+|+...
T Consensus 176 ~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~--~--~~~~~~~~~~~~~~~~~~~~~~d~vid~~ 251 (350)
T cd08240 176 DEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGA--D--VVVNGSDPDAAKRIIKAAGGGVDAVIDFV 251 (350)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCC--c--EEecCCCccHHHHHHHHhCCCCcEEEECC
Confidence 34677777643 4455555554 55578999988887777754211 1 111111000 0001122689998632
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. ....+.+..+.|+++|.++...
T Consensus 252 g-------------~~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 252 N-------------NSATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred C-------------CHHHHHHHHHHhhcCCeEEEEC
Confidence 1 1235788889999999997654
No 471
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=71.38 E-value=25 Score=30.15 Aligned_cols=89 Identities=10% Similarity=0.001 Sum_probs=51.4
Q ss_pred CCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|+=+|+|. |......++.-..+|+++|.++.....+... ...+. ++.+. . ...|+|++.-.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~-----G~~v~--~leea--l--~~aDVVItaTG---- 259 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD-----GFRVM--TMEEA--A--KIGDIFITATG---- 259 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc-----CCEeC--CHHHH--H--hcCCEEEECCC----
Confidence 44788999887 5554444554334899999998654333321 12222 22221 1 24698876311
Q ss_pred ccCCCchHHHHHHHH-HHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLG-EVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~-~i~r~LkpgG~~~~~~~~~ 120 (210)
-..++. +....+|+|++++......
T Consensus 260 ---------~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 260 ---------NKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred ---------CHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 123343 4778899999998776543
No 472
>PLN00203 glutamyl-tRNA reductase
Probab=71.37 E-value=24 Score=31.34 Aligned_cols=106 Identities=11% Similarity=0.179 Sum_probs=55.4
Q ss_pred CCCEEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+|+=||+|. .+..++ ..+..+++.++.++...+...+.+. .+.+...+..+.. -.-...|+|++.-.-
T Consensus 266 ~kkVlVIGAG~--mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---g~~i~~~~~~dl~-~al~~aDVVIsAT~s 339 (519)
T PLN00203 266 SARVLVIGAGK--MGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---DVEIIYKPLDEML-ACAAEADVVFTSTSS 339 (519)
T ss_pred CCEEEEEeCHH--HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---CCceEeecHhhHH-HHHhcCCEEEEccCC
Confidence 46799998854 444343 3465679999999877766655542 1222222222222 112457998874322
Q ss_pred chhccCCCchHHHHHHHHHHHHhccC-CcEEEEEEcCCchhhHh
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKP-GGIYMLITYGDPKARMI 126 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~Lkp-gG~~~~~~~~~p~~~~~ 126 (210)
.+. --....++++.+.-+. +...++++..-|...-+
T Consensus 340 ~~p-------vI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp 376 (519)
T PLN00203 340 ETP-------LFLKEHVEALPPASDTVGGKRLFVDISVPRNVGA 376 (519)
T ss_pred CCC-------eeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcc
Confidence 111 1123334443322111 34467889888765443
No 473
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=71.27 E-value=26 Score=28.61 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=50.4
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCc-EEEEccc---CCCCCCCCCcccEEEECCc
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQL-KYLQMDV---RDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v-~~~~~d~---~~~~~~~~~~fD~Vi~~~~ 82 (210)
.+||-.|+|. |..+..+++. +..++++++-++.-.+.+++.-. ..+ .....+. ... ...+.+|+|+..-.
T Consensus 165 ~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~--~~~~~vd~vld~~g 240 (341)
T cd05281 165 KSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGA--DVVINPREEDVVEVKSV--TDGTGVDVVLEMSG 240 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCc--ceeeCcccccHHHHHHH--cCCCCCCEEEECCC
Confidence 3566666643 4555555655 43368888777766666554321 100 0001111 111 23456999986321
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
......++.+.|+++|.++...
T Consensus 241 -------------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 241 -------------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred -------------CHHHHHHHHHHhccCCEEEEEc
Confidence 1234667788999999987654
No 474
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=71.23 E-value=26 Score=28.50 Aligned_cols=90 Identities=10% Similarity=0.043 Sum_probs=50.8
Q ss_pred CCCEEEeCCCC-chhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPS-IVMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|+=+|+|. |......++ .+. +|+.+|.++...+.++.. ..++.. ..++. ..-..+|+|+..-..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~-----G~~~~~--~~~l~-~~l~~aDiVI~t~p~-- 220 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEM-----GLSPFH--LSELA-EEVGKIDIIFNTIPA-- 220 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-----CCeeec--HHHHH-HHhCCCCEEEECCCh--
Confidence 46899999875 332223333 355 899999998766655432 122221 12222 112368999974221
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.-.-++..+.++||+.++-+.+.
T Consensus 221 -----------~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 221 -----------LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred -----------hhhhHHHHHcCCCCcEEEEEccC
Confidence 11235566778998877655443
No 475
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=71.11 E-value=40 Score=27.75 Aligned_cols=72 Identities=7% Similarity=0.003 Sum_probs=40.6
Q ss_pred CCEEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~ 80 (210)
.+||-.| |+|.++..++ +.+. +|++++.++..............++.++.+|+.+.. .+....+|+|+..
T Consensus 5 k~ilItG-atG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~ 82 (349)
T TIGR02622 5 KKVLVTG-HTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL 82 (349)
T ss_pred CEEEEEC-CCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence 5677777 4555554444 3465 799998766432222111111135777888887743 1222357988876
Q ss_pred Cc
Q 028385 81 GT 82 (210)
Q Consensus 81 ~~ 82 (210)
..
T Consensus 83 A~ 84 (349)
T TIGR02622 83 AA 84 (349)
T ss_pred Cc
Confidence 54
No 476
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=71.03 E-value=58 Score=26.87 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=55.0
Q ss_pred CCCEEEeCCCC-chhH-HHHHHcCCCcEEEEeCCHHHH-----HHHHHhhcCCCCcEEEE-cccCCCCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMS-EDMVKDGYEDIVNIDISSVAI-----DMMKMKYEEIPQLKYLQ-MDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~-~~l~~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~v~~~~-~d~~~~~~~~~~~fD~Vi~ 79 (210)
..+|.=||+|+ |... ..++..+..+++.+|++++.. +............++.. .|..++. .-|+|+.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~-----~aDiVI~ 80 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIA-----GSDVVIV 80 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhC-----CCCEEEE
Confidence 35799999987 3333 233444645799999999853 22221111112234443 4543332 3588887
Q ss_pred CCccchhccCC------------CchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHh
Q 028385 80 KGTLDSLMCGT------------NAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMI 126 (210)
Q Consensus 80 ~~~l~~~~~~~------------~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~ 126 (210)
....--- .+. .+..-..++.+++.+.. |.|++++.+ +|.....
T Consensus 81 tag~~~~-~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~s--NP~di~t 135 (321)
T PTZ00082 81 TAGLTKR-PGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVIT--NPLDVMV 135 (321)
T ss_pred CCCCCCC-CCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec--CcHHHHH
Confidence 4321100 000 01123455566666654 777665554 5554433
No 477
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=70.63 E-value=27 Score=26.76 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=45.2
Q ss_pred CCCCEEEeCCCCchhHHH----HHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCC----C-----CCC
Q 028385 7 GTRDTCRRAAPSIVMSED----MVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF----F-----EDE 72 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~----l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~-----~~~ 72 (210)
.+.+||=.|++ |.++.. +++++. +|++++.++..+....+.... ..++.+..+|+.+... + .-+
T Consensus 5 ~~~~ilItGas-g~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 5 EGRVALVTGAA-RGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 34568877764 444444 445566 899999886655544333322 2457888999877420 0 013
Q ss_pred cccEEEECCcc
Q 028385 73 SFDAVIDKGTL 83 (210)
Q Consensus 73 ~fD~Vi~~~~l 83 (210)
.+|+|+.....
T Consensus 83 ~~d~vi~~ag~ 93 (251)
T PRK12826 83 RLDILVANAGI 93 (251)
T ss_pred CCCEEEECCCC
Confidence 68988876543
No 478
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=70.54 E-value=15 Score=27.61 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=32.4
Q ss_pred CCCCcccEEEECCccchhc-cCCCchH----HHHHHHHHHHHhccCCcEEEEEE
Q 028385 69 FEDESFDAVIDKGTLDSLM-CGTNAPI----SASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~-~~~~~~~----~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..++..|+|+.+.+|+-+. ++..+.+ ++++++..+..+|+++..++..+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 4567889999999988663 3444444 55556666666666776665554
No 479
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=70.53 E-value=16 Score=30.10 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=57.5
Q ss_pred CCCEEEeCC--CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-C-CCCCCCcccEEEECCc
Q 028385 8 TRDTCRRAA--PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-M-SFFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~-~~~~~~~fD~Vi~~~~ 82 (210)
..+||=.|+ |-|.++..+++. +. .++++-.+++-.+.+++.-.+. -+.+...|+.+ . .......+|+|++.-.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~-vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG 220 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADH-VINYREEDFVEQVRELTGGKGVDVVLDTVG 220 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCE-EEcCCcccHHHHHHHHcCCCCceEEEECCC
Confidence 346787875 346777777776 55 6777777776666665544321 12222333222 1 1122346999997432
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...+.+..+.|+++|.++.+-..
T Consensus 221 --------------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 221 --------------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred --------------HHHHHHHHHHhccCCEEEEEecC
Confidence 34466678889999999876653
No 480
>PRK06179 short chain dehydrogenase; Provisional
Probab=70.48 E-value=49 Score=25.87 Aligned_cols=67 Identities=16% Similarity=0.296 Sum_probs=42.3
Q ss_pred CCCEEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC---------CCCCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDESF 74 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~f 74 (210)
+..||=.|+ +|.++..++ +.+. +|++++.++...+ ...+++++.+|+.+... -..+..
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~-------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~ 74 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARAGY-RVFGTSRNPARAA-------PIPGVELLELDVTDDASVQAAVDEVIARAGRI 74 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCCC-EEEEEeCChhhcc-------ccCCCeeEEeecCCHHHHHHHHHHHHHhCCCC
Confidence 345787885 455555554 4465 7999998765332 12467888999887430 012468
Q ss_pred cEEEECCcc
Q 028385 75 DAVIDKGTL 83 (210)
Q Consensus 75 D~Vi~~~~l 83 (210)
|+++.+...
T Consensus 75 d~li~~ag~ 83 (270)
T PRK06179 75 DVLVNNAGV 83 (270)
T ss_pred CEEEECCCC
Confidence 999987665
No 481
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=70.47 E-value=11 Score=31.69 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=66.4
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC----CCcEEEEcccCCCCCCCCCcccEEEECCc-
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDMSFFEDESFDAVIDKGT- 82 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~- 82 (210)
.+.||.+|+.+.....+.+. +..+--|+++..+.+..+..+..+. ....+..+|....+.+..+.|+.+...+.
T Consensus 182 v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~ 261 (364)
T KOG1269|consen 182 VRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFE 261 (364)
T ss_pred EEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccch
Confidence 47899999999998888775 4456778999999988887665331 34566666655444233334444333221
Q ss_pred ------------------------cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 ------------------------LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 ------------------------l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.-|+ .+...++......++++|.+++.++-
T Consensus 262 ~~~~~~dl~~~~s~~w~~~~~~~~~~~~-------~~~~~~f~~~~~~~~~~~~v~~~e~~ 315 (364)
T KOG1269|consen 262 HLKLEKDLALKSSFPWNTPLTRDTITHW-------QDKSALFRGRVATLKPGGKVLILEYI 315 (364)
T ss_pred hhhhcccccCCCccccccccchhheeec-------ccccHHHHhHhhccCcCceEEehhhc
Confidence 1122 33445677777888888888877653
No 482
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=70.27 E-value=33 Score=28.44 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=51.8
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc--ccCC-CCCCCCCcccEEEECCcc
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM--DVRD-MSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~--d~~~-~~~~~~~~fD~Vi~~~~l 83 (210)
.+||=.|+|. |..+..+++. +...+++++.++.-.+.+++.-.. .-+..... +... +.....+.+|+|+....
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~-~~v~~~~~~~~~~~~l~~~~~~~~d~vid~~g- 262 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGAT-ECINPRDQDKPIVEVLTEMTDGGVDYAFEVIG- 262 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCC-eecccccccchHHHHHHHHhCCCCcEEEECCC-
Confidence 4666677643 4444445554 554588999888887777543211 00111111 1100 00011356899986321
Q ss_pred chhccCCCchHHHHHHHHHHHHhcc-CCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLK-PGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~Lk-pgG~~~~~~ 117 (210)
....+....+.|+ ++|.++...
T Consensus 263 ------------~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 263 ------------SADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred ------------CHHHHHHHHHHhccCCCEEEEEe
Confidence 1235667788888 999998764
No 483
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=70.25 E-value=42 Score=25.62 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=50.7
Q ss_pred CEEEeCCCCchhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC--CCCCcccEEEECCcc
Q 028385 10 DTCRRAAPSIVMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDKGTL 83 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~Vi~~~~l 83 (210)
+|.-|| .+|..+..+++ +|. +|+++-.++.-+.. .+.+...+.|+.++.. -.-..||+||+.+..
T Consensus 2 KIaiIg-AsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~-------~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 2 KIAIIG-ASGKAGSRILKEALKRGH-EVTAIVRNASKLAA-------RQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred eEEEEe-cCchhHHHHHHHHHhCCC-eeEEEEeChHhccc-------cccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 344454 46666666654 455 89999988753322 2457788888877651 122469999985432
Q ss_pred chhccCCCchHHHHHHHHHHHHhccC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKP 109 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~Lkp 109 (210)
-. ..+.....+..+.+...|+.
T Consensus 73 ~~----~~~~~~~~k~~~~li~~l~~ 94 (211)
T COG2910 73 GA----SDNDELHSKSIEALIEALKG 94 (211)
T ss_pred CC----CChhHHHHHHHHHHHHHHhh
Confidence 21 12223444455666666655
No 484
>PRK07454 short chain dehydrogenase; Provisional
Probab=70.06 E-value=30 Score=26.54 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=45.7
Q ss_pred CCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCC----CC-----CCcc
Q 028385 9 RDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF----FE-----DESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~----~~-----~~~f 74 (210)
.++|-.|+ +|.++..+ ++++. +|+.++.++.-.+...+..+.. .++.++.+|+.+... +. -+..
T Consensus 7 k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (241)
T PRK07454 7 PRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP 84 (241)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 45777775 55544444 44566 8999999887665554443222 467888999887430 00 1357
Q ss_pred cEEEECCcc
Q 028385 75 DAVIDKGTL 83 (210)
Q Consensus 75 D~Vi~~~~l 83 (210)
|+++.+...
T Consensus 85 d~lv~~ag~ 93 (241)
T PRK07454 85 DVLINNAGM 93 (241)
T ss_pred CEEEECCCc
Confidence 999886654
No 485
>PLN02253 xanthoxin dehydrogenase
Probab=69.96 E-value=36 Score=26.88 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=45.4
Q ss_pred CCEEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC----C-----CCccc
Q 028385 9 RDTCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF----E-----DESFD 75 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~----~-----~~~fD 75 (210)
.++|=.|+. |.++..++ +.|. +|+.+|.++...+...+......++.++.+|+.+.... . -+..|
T Consensus 19 k~~lItGas-~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id 96 (280)
T PLN02253 19 KVALVTGGA-TGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLD 96 (280)
T ss_pred CEEEEECCC-chHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence 357777754 44444444 4566 89999988776655544443324678889999874300 0 14689
Q ss_pred EEEECCcc
Q 028385 76 AVIDKGTL 83 (210)
Q Consensus 76 ~Vi~~~~l 83 (210)
+++.+...
T Consensus 97 ~li~~Ag~ 104 (280)
T PLN02253 97 IMVNNAGL 104 (280)
T ss_pred EEEECCCc
Confidence 99887643
No 486
>PRK06940 short chain dehydrogenase; Provisional
Probab=69.91 E-value=52 Score=26.09 Aligned_cols=103 Identities=12% Similarity=0.167 Sum_probs=56.0
Q ss_pred EEEeCCCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCC----C----CCCcccEEE
Q 028385 11 TCRRAAPSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF----F----EDESFDAVI 78 (210)
Q Consensus 11 vLdiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~----~----~~~~fD~Vi 78 (210)
+|=-|+ |.++..+++. +. +|+.+|.++.-++...+..... .++.++.+|+.+... + ..+..|+++
T Consensus 5 ~lItGa--~gIG~~la~~l~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li 81 (275)
T PRK06940 5 VVVIGA--GGIGQAIARRVGAGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGLV 81 (275)
T ss_pred EEEECC--ChHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEE
Confidence 444454 3455555543 54 8999999877665554444322 357788889877430 0 124689999
Q ss_pred ECCccchhccC-----CCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 79 DKGTLDSLMCG-----TNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 79 ~~~~l~~~~~~-----~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.+......... ..+......+++.+.+.++++|..+++
T Consensus 82 ~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 82 HTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred ECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 87654211000 001112334456666666666655443
No 487
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=69.49 E-value=19 Score=29.85 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=47.0
Q ss_pred CCEEEeCCCCchhHHHHHHc------------CC--CcEEEEeCC------HHHHHHHHHhhcCCCCcEEEEcccCCCCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKD------------GY--EDIVNIDIS------SVAIDMMKMKYEEIPQLKYLQMDVRDMSF 68 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~------------~~--~~v~~vD~s------~~~~~~a~~~~~~~~~v~~~~~d~~~~~~ 68 (210)
-.+||+|+-...-...|.+. +. -+|-.+.+= .+....+-+..++.+.++|+ ++++.-.
T Consensus 140 ~~~LDvGANvd~~~~~L~qfA~MG~~ya~~v~~~~~PrVgLLNIG~Ee~KG~e~~kea~~lLk~~~~~nF~-GnvEg~d- 217 (338)
T COG0416 140 TVVLDVGANVDCKPEHLVQFALMGSAYAEKVLGIKNPRVGLLNIGTEEIKGNELVKEAYELLKETPLINFI-GNVEGRD- 217 (338)
T ss_pred eEEEeCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecccccccCCHHHHHHHHHHHhCCCCcee-eeccccc-
Confidence 46899999876555555431 11 012111111 12223333333333444444 6666555
Q ss_pred CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhcc
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLK 108 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~Lk 108 (210)
.-++.+|+|++.+.--.+ -....+-..+.+.++||
T Consensus 218 i~~G~~DVvV~DGFtGNv-----~LKt~EG~a~~i~~~lK 252 (338)
T COG0416 218 ILDGTVDVVVTDGFTGNV-----VLKTAEGTAKFILSLLK 252 (338)
T ss_pred cccCCCCEEEeCCcchHH-----HHHHHHHHHHHHHHHHH
Confidence 668899999997755443 22334444444444444
No 488
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=69.38 E-value=33 Score=26.66 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=43.2
Q ss_pred CCCCCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCCc
Q 028385 6 TGTRDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDES 73 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~~ 73 (210)
.....+|=.|++.|. ++..+++.+. +|+.+|.++...+...+......++.++.+|+.+... + .-+.
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGR 84 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 334567888865542 3344445566 7999998864332222211222456778888877420 0 1246
Q ss_pred ccEEEECCc
Q 028385 74 FDAVIDKGT 82 (210)
Q Consensus 74 fD~Vi~~~~ 82 (210)
+|+++.+..
T Consensus 85 id~lv~nAg 93 (260)
T PRK12823 85 IDVLINNVG 93 (260)
T ss_pred CeEEEECCc
Confidence 899887654
No 489
>PRK12744 short chain dehydrogenase; Provisional
Probab=69.35 E-value=51 Score=25.58 Aligned_cols=114 Identities=14% Similarity=0.040 Sum_probs=57.5
Q ss_pred CCCCCCCCCCEEEeCCCCchhHHHHH----HcCCCcEEEEeCC----HHHHHHHHHhhcC-CCCcEEEEcccCCCCC---
Q 028385 1 MATPSTGTRDTCRRAAPSIVMSEDMV----KDGYEDIVNIDIS----SVAIDMMKMKYEE-IPQLKYLQMDVRDMSF--- 68 (210)
Q Consensus 1 ~~~~~~~~~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s----~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~--- 68 (210)
|+.-...+.++|=.|+..| ++..++ +.+. +++.++.+ ....+...+.... ..++.++.+|+.+...
T Consensus 1 ~~~~~l~~k~vlItGa~~g-IG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 78 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKN-LGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEK 78 (257)
T ss_pred CCCCCCCCcEEEEECCCch-HHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHH
Confidence 4433334457888886554 444444 4465 66666543 2223222222211 1367888999887430
Q ss_pred -C-----CCCcccEEEECCccchhc-cCCCchHH-----------HHHHHHHHHHhccCCcEEEEE
Q 028385 69 -F-----EDESFDAVIDKGTLDSLM-CGTNAPIS-----------ASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 69 -~-----~~~~fD~Vi~~~~l~~~~-~~~~~~~~-----------~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+ .-+..|+++.+....... ....+.++ ...+++.+.+.++++|.++++
T Consensus 79 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 79 LFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred HHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 0 124689998876542110 01111222 223456777777777766543
No 490
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=69.22 E-value=58 Score=27.14 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=41.9
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHH-------------------HHHhh-cCCC--CcEEEEcccC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDM-------------------MKMKY-EEIP--QLKYLQMDVR 64 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~-------------------a~~~~-~~~~--~v~~~~~d~~ 64 (210)
-+||-||+|. ..+...++-.|+.++..+|.+.--+.. |.+-. ...+ .|.++..+++
T Consensus 41 ~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIq 120 (422)
T KOG2015|consen 41 CKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQ 120 (422)
T ss_pred CcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecchh
Confidence 4789999875 244444444577777777765322111 11111 1123 3567777888
Q ss_pred CCCCCCCCcccEEEECCccchh
Q 028385 65 DMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 65 ~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
+.+.--=..||+|++. |+.+
T Consensus 121 d~~~~FYk~F~~iicG--LDsI 140 (422)
T KOG2015|consen 121 DKPISFYKRFDLIICG--LDSI 140 (422)
T ss_pred cCCHHHHhhhceEEec--ccch
Confidence 7661112469999973 5555
No 491
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=69.07 E-value=59 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=23.9
Q ss_pred CCCEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCC
Q 028385 8 TRDTCRRAAPS-I-VMSEDMVKDGYEDIVNIDIS 39 (210)
Q Consensus 8 ~~~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s 39 (210)
..+|+=+|||. | ..+..|++.|..+++.+|.+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46899999984 4 45555666787789999876
No 492
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=68.80 E-value=69 Score=26.87 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=56.0
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc----ccCC-CCCCCCCcccEEEECC
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM----DVRD-MSFFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~----d~~~-~~~~~~~~fD~Vi~~~ 81 (210)
..|.=+|||. |.....-++. +...++++|+++.-++.|++--. .+++.. |+.+ ....-++-.|.++.
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA----T~~vn~~~~~~vv~~i~~~T~gG~d~~~e-- 260 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA----THFVNPKEVDDVVEAIVELTDGGADYAFE-- 260 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC----ceeecchhhhhHHHHHHHhcCCCCCEEEE--
Confidence 3567778765 4444444443 66789999999999999987532 223322 1111 00122335566643
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.. .-...++.....+.++|..+++-...+.
T Consensus 261 ---~~--------G~~~~~~~al~~~~~~G~~v~iGv~~~~ 290 (366)
T COG1062 261 ---CV--------GNVEVMRQALEATHRGGTSVIIGVAGAG 290 (366)
T ss_pred ---cc--------CCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 12 1122556666666679999888766554
No 493
>PRK07904 short chain dehydrogenase; Provisional
Probab=68.71 E-value=27 Score=27.31 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=44.2
Q ss_pred CCCCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHH-HHHHHHhhcCC--CCcEEEEcccCCCCC--------CCC
Q 028385 7 GTRDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVA-IDMMKMKYEEI--PQLKYLQMDVRDMSF--------FED 71 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~-~~~a~~~~~~~--~~v~~~~~d~~~~~~--------~~~ 71 (210)
...+||-.|+..| ++..+ ++.+..+|+.++.++.- ++.+.+..... .++.++.+|+.+... ...
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 3346888888554 34334 34443489999887653 55443333221 368899999876430 112
Q ss_pred CcccEEEECCc
Q 028385 72 ESFDAVIDKGT 82 (210)
Q Consensus 72 ~~fD~Vi~~~~ 82 (210)
+..|+++.+..
T Consensus 86 g~id~li~~ag 96 (253)
T PRK07904 86 GDVDVAIVAFG 96 (253)
T ss_pred CCCCEEEEeee
Confidence 57898876543
No 494
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.60 E-value=12 Score=28.66 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=46.0
Q ss_pred CCEEEeCCC-CchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAP-SIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+||-+|.- +|.....++.. .++|+.+|+.|.|-.... ++++|..+ +. +..+.+|+|+..-.+..+
T Consensus 46 ~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~lp------~~v~Fr~~----~~-~~~G~~DlivDlTGlGG~ 112 (254)
T COG4017 46 KEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFLP------NNVKFRNL----LK-FIRGEVDLIVDLTGLGGI 112 (254)
T ss_pred ceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcCC------CCccHhhh----cC-CCCCceeEEEeccccCCC
Confidence 468888874 68787777765 448999999997633322 45666644 33 667889999986665544
No 495
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=68.50 E-value=67 Score=26.57 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=51.8
Q ss_pred CCEEEeCCC-CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC-----CCCCCCcccEEEECC
Q 028385 9 RDTCRRAAP-SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-----SFFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~-----~~~~~~~fD~Vi~~~ 81 (210)
.+||-.|+| .|..+..+++. +...+++++.++...+.+++... ..+...+-.+. ....+..+|+|+..
T Consensus 189 ~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~----~~v~~~~~~~~~~~l~~~~~~~~~d~vld~- 263 (367)
T cd08263 189 ETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGA----THTVNAAKEDAVAAIREITGGRGVDVVVEA- 263 (367)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCC----ceEecCCcccHHHHHHHHhCCCCCCEEEEe-
Confidence 456656654 24444555554 55349999988887777654211 11221111111 00234569999863
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ .. ...+.+..++|+++|.++...
T Consensus 264 ----v-------g~-~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 264 ----L-------GK-PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred ----C-------CC-HHHHHHHHHHHhcCCEEEEEc
Confidence 2 11 125777889999999987664
No 496
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.38 E-value=57 Score=25.73 Aligned_cols=74 Identities=11% Similarity=0.026 Sum_probs=43.4
Q ss_pred CCEEEeCCCC--c---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------C--CCCCcc
Q 028385 9 RDTCRRAAPS--I---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------F--FEDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~--~~~~~f 74 (210)
..+|=.|++. | .++..+++.|. +|+.++.+....+.+++.....+.+.++.+|+.+.. . -.-+.+
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 85 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPKF 85 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCCC
Confidence 3577888765 3 24555666676 788888764322333222222244567888988742 0 012468
Q ss_pred cEEEECCcc
Q 028385 75 DAVIDKGTL 83 (210)
Q Consensus 75 D~Vi~~~~l 83 (210)
|+++.+..+
T Consensus 86 D~linnAg~ 94 (262)
T PRK07984 86 DGFVHSIGF 94 (262)
T ss_pred CEEEECCcc
Confidence 999988754
No 497
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=68.38 E-value=52 Score=25.30 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=24.7
Q ss_pred CCCEEEeCCCC--chhHHHHHHcCCCcEEEEeCC
Q 028385 8 TRDTCRRAAPS--IVMSEDMVKDGYEDIVNIDIS 39 (210)
Q Consensus 8 ~~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s 39 (210)
..+|+=+|||. +..+..++..|..+++.+|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45799999984 455566667788789999988
No 498
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.37 E-value=32 Score=26.41 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=45.6
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC---------CCCcccE
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~fD~ 76 (210)
.++|=.|+..|. ++..+++.+. +|++++.++.-.+..........++.++.+|+.+.... ..+.+|+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 84 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVDI 84 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 467777764432 2333444566 79999999876665554443224578889998874311 1135899
Q ss_pred EEECCcc
Q 028385 77 VIDKGTL 83 (210)
Q Consensus 77 Vi~~~~l 83 (210)
|+.....
T Consensus 85 vi~~ag~ 91 (251)
T PRK07231 85 LVNNAGT 91 (251)
T ss_pred EEECCCC
Confidence 9886643
No 499
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=68.14 E-value=54 Score=26.84 Aligned_cols=93 Identities=8% Similarity=0.109 Sum_probs=54.3
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CC------CcEEEEcccCCCCCCCCCcccEEE
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IP------QLKYLQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~------~v~~~~~d~~~~~~~~~~~fD~Vi 78 (210)
+|.=||||. +.++..+++.+. +|+.++.+++.++..++.... .+ ++.+. .|... ...+..|+|+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~---~~~~~~Dlii 76 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDE---VLSDNATCII 76 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHH---HHhCCCCEEE
Confidence 577788876 345555556565 799999988777666553211 11 11111 11111 1124678877
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHH-hccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSR-LLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r-~LkpgG~~~~~~ 117 (210)
.. + +......+++++.. .++++..+++..
T Consensus 77 ia-----v-----ks~~~~~~l~~l~~~~l~~~~~vv~~~ 106 (326)
T PRK14620 77 LA-----V-----PTQQLRTICQQLQDCHLKKNTPILICS 106 (326)
T ss_pred EE-----e-----CHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 52 2 33567788888887 888887765544
No 500
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=67.80 E-value=21 Score=28.67 Aligned_cols=123 Identities=16% Similarity=0.115 Sum_probs=51.8
Q ss_pred CCCCCCCCCCEEEeCCCCch---hHHHHHHc--CC-CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcc
Q 028385 1 MATPSTGTRDTCRRAAPSIV---MSEDMVKD--GY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESF 74 (210)
Q Consensus 1 ~~~~~~~~~~vLdiGcG~G~---~~~~l~~~--~~-~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~f 74 (210)
||+|. .+|||.+|+|+-. .+..++++ +. .-++-.|+.+-. . +--..+.+|..... ++.+|
T Consensus 57 laVP~--nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v--------S--Da~~~~~~Dc~t~~--~~~k~ 122 (299)
T PF06460_consen 57 LAVPH--NMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV--------S--DADQSIVGDCRTYM--PPDKF 122 (299)
T ss_dssp ----T--T-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----------SSSEEEES-GGGEE--ESS-E
T ss_pred Eeecc--CcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc--------c--ccCCceeccccccC--CCCcc
Confidence 34553 4699999998732 22333333 22 235555553321 1 22346778887764 57899
Q ss_pred cEEEECCc---cchhccCCCchHH-HHHHHHHHHHhccCCcEEEEE--EcCCchhhHhhhcccccceEEE
Q 028385 75 DAVIDKGT---LDSLMCGTNAPIS-ASQMLGEVSRLLKPGGIYMLI--TYGDPKARMIHLKWKVYNWKIE 138 (210)
Q Consensus 75 D~Vi~~~~---l~~~~~~~~~~~~-~~~~l~~i~r~LkpgG~~~~~--~~~~p~~~~~~~~~~~~~~~~~ 138 (210)
|+|++..- ..++.-.....+. ..-+..-+..-|+=||.+.+- +++. ...+..+.+....|.+.
T Consensus 123 DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw-~~~Lyel~~~F~~wt~F 191 (299)
T PF06460_consen 123 DLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW-NAQLYELMGYFSWWTCF 191 (299)
T ss_dssp EEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS---HHHHHHHTTEEEEEEE
T ss_pred cEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc-cHHHHHHHhhcccEEEE
Confidence 99998521 0000000011111 223345566778899998763 3332 12222222455566664
Done!