Query 028386
Match_columns 210
No_of_seqs 125 out of 210
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 17:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh9_B TAFII28; histone fold, 100.0 6.7E-42 2.3E-46 259.8 12.1 89 112-201 1-89 (89)
2 3b0c_W CENP-W, centromere prot 97.9 5.6E-05 1.9E-09 54.6 8.5 71 126-197 3-73 (76)
3 1n1j_B NF-YC; histone-like PAI 97.8 4.8E-05 1.6E-09 57.4 6.4 75 120-195 12-86 (97)
4 1b67_A Protein (histone HMFA); 97.6 7.6E-05 2.6E-09 52.3 5.2 68 126-195 1-68 (68)
5 4g92_C HAPE; transcription fac 97.5 9.8E-05 3.4E-09 57.7 5.2 72 122-194 36-107 (119)
6 1n1j_A NF-YB; histone-like PAI 97.3 0.0008 2.7E-08 49.9 7.2 69 126-195 7-76 (93)
7 1jfi_A Transcription regulator 97.0 0.00086 2.9E-08 50.7 4.7 69 125-194 9-77 (98)
8 2yfw_B Histone H4, H4; cell cy 96.9 0.0031 1.1E-07 47.9 7.4 67 127-195 29-95 (103)
9 1tzy_D Histone H4-VI; histone- 96.9 0.0031 1.1E-07 47.9 7.1 67 127-195 29-95 (103)
10 2byk_A Chrac-16; nucleosome sl 96.8 0.001 3.6E-08 53.6 4.4 80 124-203 16-99 (140)
11 2byk_B Chrac-14; nucleosome sl 96.8 0.0036 1.2E-07 49.6 7.1 69 126-195 8-77 (128)
12 1ku5_A HPHA, archaeal histon; 96.6 0.0048 1.6E-07 43.4 6.3 65 126-192 5-69 (70)
13 1jfi_B DR1 protein, transcript 96.5 0.0097 3.3E-07 49.9 8.5 69 127-196 15-83 (179)
14 1f1e_A Histone fold protein; a 96.2 0.0018 6.2E-08 53.1 2.3 81 126-207 3-90 (154)
15 2hue_C Histone H4; mini beta s 96.0 0.012 4E-07 43.2 5.4 67 126-194 9-75 (84)
16 1id3_B Histone H4; nucleosome 95.9 0.021 7.1E-07 43.5 6.8 66 127-194 28-93 (102)
17 2nqb_C Histone H2A; nucleosome 95.9 0.021 7.3E-07 45.0 7.0 65 127-192 23-87 (123)
18 1f1e_A Histone fold protein; a 95.9 0.018 6.1E-07 47.2 6.7 70 127-198 82-151 (154)
19 1tzy_A Histone H2A-IV; histone 95.9 0.022 7.7E-07 45.2 7.0 65 127-192 25-89 (129)
20 1id3_C Histone H2A.1; nucleoso 95.8 0.023 7.8E-07 45.3 6.9 65 127-192 25-89 (131)
21 3b0c_T CENP-T, centromere prot 95.5 0.029 1E-06 43.3 6.3 69 124-194 4-72 (111)
22 2f8n_K Histone H2A type 1; nuc 95.5 0.037 1.3E-06 45.2 7.1 65 127-192 44-108 (149)
23 2f8n_G Core histone macro-H2A. 95.3 0.048 1.6E-06 42.8 7.0 65 127-192 22-86 (120)
24 1taf_B TFIID TBP associated fa 95.0 0.1 3.6E-06 37.6 7.4 65 126-192 5-69 (70)
25 1f66_C Histone H2A.Z; nucleoso 94.9 0.073 2.5E-06 42.2 6.9 66 127-193 27-93 (128)
26 2jss_A Chimera of histone H2B. 94.0 0.19 6.4E-06 41.8 7.9 65 127-192 105-170 (192)
27 1h3o_B Transcription initiatio 93.6 0.35 1.2E-05 35.4 7.8 67 127-194 5-71 (76)
28 4dra_E Centromere protein X; D 93.4 0.38 1.3E-05 35.9 7.8 70 126-196 11-82 (84)
29 3b0b_C CENP-X, centromere prot 93.1 0.4 1.4E-05 35.4 7.5 71 125-196 6-78 (81)
30 2q2k_A Hypothetical protein; p 75.9 1.3 4.3E-05 31.6 1.9 18 182-199 50-68 (70)
31 2jss_A Chimera of histone H2B. 75.0 14 0.00048 30.5 8.3 64 130-194 6-69 (192)
32 1mhq_A ADP-ribosylation factor 59.3 9.6 0.00033 30.0 4.1 39 166-205 104-143 (148)
33 1tzy_B Histone H2B; histone-fo 59.1 26 0.00089 27.8 6.5 64 131-195 40-103 (126)
34 2nqb_D Histone H2B; nucleosome 57.2 30 0.001 27.4 6.5 64 131-195 37-100 (123)
35 4fhr_B Flagellar motor switch 52.0 28 0.00095 29.2 5.9 69 127-200 132-212 (216)
36 1gng_X Frattide, glycogen synt 50.3 6.5 0.00022 25.6 1.4 12 187-198 26-37 (39)
37 1juq_A ADP-ribosylation factor 44.3 16 0.00055 29.4 3.2 36 164-200 114-149 (171)
38 3ksy_A SOS-1, SON of sevenless 42.0 60 0.002 32.8 7.5 64 128-193 105-168 (1049)
39 1taf_A TFIID TBP associated fa 41.1 91 0.0031 21.9 8.1 60 132-193 6-65 (68)
40 2gsv_A Hypothetical protein YV 40.4 94 0.0032 22.7 6.4 43 146-197 22-69 (80)
41 2l5a_A Histone H3-like centrom 36.3 1.9E+02 0.0066 25.0 8.9 61 133-195 167-227 (235)
42 3g2s_A C-terminal fragment of 35.5 31 0.001 27.3 3.5 35 165-200 113-147 (149)
43 3v9r_B MHF2, uncharacterized p 34.2 53 0.0018 24.7 4.4 44 128-171 2-47 (88)
44 3pkr_A FLIG, flagellar motor s 32.3 48 0.0017 28.9 4.5 68 128-200 190-269 (279)
45 1x5b_A Signal transducing adap 30.9 62 0.0021 25.6 4.6 40 164-203 111-153 (163)
46 3hjl_A Flagellar motor switch 30.7 85 0.0029 27.9 5.9 68 128-200 246-325 (329)
47 2hue_B Histone H3; mini beta s 29.3 1.5E+02 0.005 21.4 5.9 65 128-193 4-72 (77)
48 4afj_X Proto-oncogene FRAT1; t 29.2 14 0.00047 22.9 0.3 13 186-198 16-28 (30)
49 3byi_A RHO GTPase activating p 27.6 1.2E+02 0.0041 24.2 5.9 59 121-193 55-118 (214)
50 2w9y_A CE-FAR-7, fatty acid/re 26.7 1E+02 0.0034 24.8 5.1 39 157-195 83-121 (140)
51 2ly8_A Budding yeast chaperone 24.8 2.5E+02 0.0084 21.8 7.0 49 145-194 64-112 (121)
52 2qxf_A Exodeoxyribonuclease I; 24.5 57 0.002 30.3 3.8 31 110-140 417-447 (482)
53 1bh9_A TAFII18; histone fold, 23.4 1.4E+02 0.0047 19.3 4.5 40 133-172 6-45 (45)
54 3fk2_A Glucocorticoid receptor 23.2 1.3E+02 0.0046 24.7 5.5 44 121-165 88-135 (246)
55 1mfq_C SRP54, signal recogniti 22.6 1.1E+02 0.0037 24.1 4.5 38 99-139 57-97 (129)
56 3b0b_B CENP-S, centromere prot 22.2 1.1E+02 0.0036 23.4 4.2 61 133-194 25-87 (107)
57 2ee4_A RHO GTPase activating p 22.1 86 0.0029 25.0 4.0 44 121-165 47-94 (209)
58 3kp1_E D-ornithine aminomutase 22.0 1.7E+02 0.0059 23.0 5.5 13 108-120 13-25 (121)
59 3ldz_A STAM-1, signal transduc 21.5 62 0.0021 24.9 2.9 35 165-199 101-137 (140)
60 1qb2_A SRP54, human signal rec 21.5 1.7E+02 0.0059 22.1 5.4 38 99-139 44-84 (109)
61 3rru_A TOM1L1 protein; structu 20.7 1.2E+02 0.004 24.0 4.4 35 164-198 116-152 (152)
62 3zed_D Capsid protein VP3; vir 20.7 1E+02 0.0035 26.8 4.3 43 120-162 138-184 (242)
63 3zyq_A Hepatocyte growth facto 20.6 78 0.0027 26.2 3.5 37 164-200 104-142 (226)
64 1dum_A Magainin 2; antibiotic, 20.2 49 0.0017 19.5 1.5 13 155-167 10-22 (26)
65 1dul_A Signal recognition part 20.2 49 0.0017 23.4 1.8 34 101-139 11-44 (69)
66 3v9r_A MHF1, uncharacterized p 20.1 2.3E+02 0.0078 20.8 5.6 60 133-193 18-79 (90)
No 1
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=100.00 E-value=6.7e-42 Score=259.82 Aligned_cols=89 Identities=49% Similarity=0.823 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Q 028386 112 FTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAY 191 (210)
Q Consensus 112 fteEQl~RYE~fRRS~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~ 191 (210)
||+|||+|||.||||+|+|++|||||+++++ ++||+|++|+|+||||+|||||||+|++||++|++++||+|+||||||
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~vKrl~~~~~~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~ 79 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAV 79 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence 8999999999999999999999999999986 589999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCC
Q 028386 192 RRLKLEGKVP 201 (210)
Q Consensus 192 RRL~~~Gkvp 201 (210)
|||+.+|++|
T Consensus 80 rrl~~~g~~p 89 (89)
T 1bh9_B 80 RRLKSKGQIP 89 (89)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHcCCCC
Confidence 9999999997
No 2
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.91 E-value=5.6e-05 Score=54.60 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=63.1
Q ss_pred ccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHhc
Q 028386 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLE 197 (210)
Q Consensus 126 S~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~ 197 (210)
..||++.|+|||.++.+...||.+...+|.-.+-+||-.|..+|.+++... ...-|.++||..|.+.|..+
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~-~rKTI~~~dI~~A~~~ll~k 73 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFEN-KSKIIKPEHTIAAAKVILKK 73 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSBCHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHH
Confidence 479999999999988777789999999999999999999999999997764 46689999999999988754
No 3
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.77 E-value=4.8e-05 Score=57.35 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=58.0
Q ss_pred HHHHHhccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 028386 120 YESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (210)
Q Consensus 120 YE~fRRS~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (210)
-..|+...||-+.|||||..--....||....++++..+-+||.+|++.|-.+... +.+.-|+|.||..|++...
T Consensus 12 ~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~-~krktI~~~di~~Av~~~e 86 (97)
T 1n1j_B 12 VKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTED-NKRRTLQRNDIAMAITKFD 86 (97)
T ss_dssp --------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHTTCG
T ss_pred cCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccCCHHHHHHHHhcCc
Confidence 45689999999999999987644357999999999999999999999999988764 3567899999999987643
No 4
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=97.63 E-value=7.6e-05 Score=52.27 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=60.1
Q ss_pred ccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 028386 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (210)
Q Consensus 126 S~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (210)
+.||++.|+|||.++ +...++.....++.-.+..|+-.|.+.|-.+.... .+--|.|.||..|.++|+
T Consensus 1 ~~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~-kRkTI~~~Di~~A~~~l~ 68 (68)
T 1b67_A 1 GELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHA-GRKTIKAEDIELARKMFK 68 (68)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHGGGGC
T ss_pred CCCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCHHHHHHHHHhcC
Confidence 469999999999998 66789999999999999999999999999987653 456799999999998874
No 5
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.54 E-value=9.8e-05 Score=57.73 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=61.6
Q ss_pred HHHhccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 028386 122 SFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (210)
Q Consensus 122 ~fRRS~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (210)
.|+...||-+.|||||..--....|+....++++..+-+||.+|++.|-.++... .+.=|+|.||..|++..
T Consensus 36 d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~-krktI~~~di~~Av~~~ 107 (119)
T 4g92_C 36 DYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDN-KRRTLQRSDIAAALSKS 107 (119)
T ss_dssp CSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHTTC
T ss_pred ccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCccCHHHHHHHHhcC
Confidence 4677789999999999875555579999999999999999999999999987654 45679999999999764
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.28 E-value=0.0008 Score=49.92 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=59.7
Q ss_pred ccCChhHHHHHHHHhcC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 028386 126 SALQKSNMRRLLVSITG-SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (210)
Q Consensus 126 S~f~K~~IKRLi~~vtg-sqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (210)
..||++.|+|||..... ...||.....++.-.+.+||-.|.+.|-.++... .+.-|++.||..|+++|.
T Consensus 7 ~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~-kRkTI~~~Dv~~Al~~l~ 76 (93)
T 1n1j_A 7 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQE-KRKTINGEDILFAMSTLG 76 (93)
T ss_dssp CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHHHTT
T ss_pred ccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCHHHHHHHHHHcC
Confidence 47999999999999843 3479999999999999999999999999997754 456799999999998664
No 7
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.96 E-value=0.00086 Score=50.66 Aligned_cols=69 Identities=10% Similarity=0.301 Sum_probs=55.1
Q ss_pred hccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 028386 125 RSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (210)
Q Consensus 125 RS~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (210)
...||=+.|||||..--....||....++++..+-+|+.+|++.|-.+.... ...-|+|.||..|++.-
T Consensus 9 ~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~-krktI~~~di~~av~~~ 77 (98)
T 1jfi_A 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSR-NAKTMTTSHLKQCIELE 77 (98)
T ss_dssp -CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC----CBCHHHHHTTCC--
T ss_pred CCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCeecHHHHHHHHhcC
Confidence 3679999999999874433579999999999999999999999999886643 46789999999988764
No 8
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=96.89 E-value=0.0031 Score=47.95 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=58.6
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 028386 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (210)
.||++.|+||+.+. |-..||..+...++.+.+.|+-+|++.|...+..- ...=|.|.||.-|++++.
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha-kRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 29 GITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA-KRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp -CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCcHHHHHHHHHHcC
Confidence 39999999999886 55679999999999999999999999999998754 345699999999999983
No 9
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=96.86 E-value=0.0031 Score=47.89 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=58.9
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 028386 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (210)
.||++.|+||+.+. |-..||..+...++.+.+.|+-+|++.|...+..- ...=|.|.||.-|++++.
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha-kRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 29 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA-KRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHHHcC
Confidence 49999999999886 55679999999999999999999999999998754 345699999999999873
No 10
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.82 E-value=0.001 Score=53.58 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=53.1
Q ss_pred HhccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH----hcCC
Q 028386 124 RRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK----LEGK 199 (210)
Q Consensus 124 RRS~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~----~~Gk 199 (210)
....||-+.|||||..--....|+....++|+-.+-+||.+|++.|-.++...+.+.-|+|.||..|++... +.+-
T Consensus 16 ~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~di 95 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQI 95 (140)
T ss_dssp -------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTTT
T ss_pred cCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhcc
Confidence 456899999999998754445799999999999999999999999999973344677899999999998632 3355
Q ss_pred CCCC
Q 028386 200 VPKR 203 (210)
Q Consensus 200 vp~r 203 (210)
+|.+
T Consensus 96 vP~k 99 (140)
T 2byk_A 96 VPQK 99 (140)
T ss_dssp SCSC
T ss_pred ccch
Confidence 6644
No 11
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=96.76 E-value=0.0036 Score=49.55 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=56.9
Q ss_pred ccCChhHHHHHHHHhcC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 028386 126 SALQKSNMRRLLVSITG-SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (210)
Q Consensus 126 S~f~K~~IKRLi~~vtg-sqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (210)
..||.+.|+|||..+.. ...||.....+|.=.+-+||-.|..+|.+++... .+.-|++.||-.|+.++-
T Consensus 8 ~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~-kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 8 LNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQ-NHKTITAKDILQTLTELD 77 (128)
T ss_dssp ---CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSCCHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCHHHHHHHHHHcC
Confidence 47999999999997653 3469999999999999999999999999997654 567899999999988764
No 12
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=96.64 E-value=0.0048 Score=43.44 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=56.8
Q ss_pred ccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 028386 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (210)
Q Consensus 126 S~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (210)
+.||++.|+||+... |...+|..+...+..+++.|+-+|.+.|......- .+.-|.|.+|.-|.+
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~ha-kRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHA-GRKTVKVEDIKLAIK 69 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCSEECHHHHHHHHT
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHH
Confidence 579999999999986 66789999999999999999999999999886644 455789999998865
No 13
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.53 E-value=0.0097 Score=49.95 Aligned_cols=69 Identities=13% Similarity=0.263 Sum_probs=61.1
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHh
Q 028386 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKL 196 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~ 196 (210)
.||+++|.|||.++..+.+|+.....+|.=.+-+||-.|..+|.+++... .+.-|.+.||-.|+..|.-
T Consensus 15 ~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~-~RKTI~~eDVl~Al~~LgF 83 (179)
T 1jfi_B 15 TIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKS-EKKTISPEHVIQALESLGF 83 (179)
T ss_dssp CCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHHhcCh
Confidence 69999999999998755689999999999999999999999999998754 4678999999999988753
No 14
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=96.23 E-value=0.0018 Score=53.09 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=67.0
Q ss_pred ccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH-------HhcC
Q 028386 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL-------KLEG 198 (210)
Q Consensus 126 S~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL-------~~~G 198 (210)
+.||++.|+|||....|...||......++-..+.|+-.|+..|-+..... .+.-|.+.||..|..+| +..-
T Consensus 3 ~~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha-~RKTv~a~DV~~a~~~lg~~~v~d~~~l 81 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDAS-GKKTLMEEHLKALADVLMVEGVEDYDGE 81 (154)
T ss_dssp -CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCSEECHHHHHHHHHHHTCTTSTTCCSC
T ss_pred ccCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHHhcccccCCccccc
Confidence 479999999999998787889999999999999999999999999997643 56789999999999988 3333
Q ss_pred CCCCCCCCC
Q 028386 199 KVPKRSVPR 207 (210)
Q Consensus 199 kvp~r~~~r 207 (210)
.+|...+.|
T Consensus 82 ~lP~a~V~R 90 (154)
T 1f1e_A 82 LFGRATVRR 90 (154)
T ss_dssp CCCHHHHHH
T ss_pred cCCccHHHH
Confidence 466544444
No 15
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=95.96 E-value=0.012 Score=43.16 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=58.2
Q ss_pred ccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 028386 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (210)
Q Consensus 126 S~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (210)
..+|++.|+||+.+. |-..||..+.-.+..+.+.|+-+|+..|...+..- .+.=|.+.+|.-|++++
T Consensus 9 ~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha-~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 9 QGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA-KRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCcHHHHHHHHHHc
Confidence 369999999999885 65679999999999999999999999999998754 34468899999998876
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.93 E-value=0.021 Score=43.54 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=58.3
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 028386 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (210)
.||++.|+||+.+. |-..||..+.-.+..+.+.|+-+|+..|...+..- .+.-|.+.+|.-|++++
T Consensus 28 ~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~Ha-kRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 28 GITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHA-KRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCcHHHHHHHHHHc
Confidence 49999999999885 55579999999999999999999999999998754 34468899999999987
No 17
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=95.91 E-value=0.021 Score=44.98 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=57.2
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 028386 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (210)
.||-+.|.|+|..-.....|+....+.++++--.|+.||.|.|-...... ...-|.|.||..|.+
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~-k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIR 87 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccccHHHHHHHHh
Confidence 57888899999987677789999999999999999999999998886653 467899999999988
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=95.90 E-value=0.018 Score=47.21 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=62.7
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHhcC
Q 028386 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEG 198 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~G 198 (210)
.||++.|.|||... |...||......+..+.+.|+-+|+.+|-+....- .+.-|.|.||..|+++..-+|
T Consensus 82 ~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha-~RKTIt~eDV~~Al~~~~~~~ 151 (154)
T 1f1e_A 82 LFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADED-GRKTVQGEDVEKAITYSMPKG 151 (154)
T ss_dssp CCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHHSGGG
T ss_pred cCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCHHHHHHHHHhcCCcc
Confidence 69999999999997 77799999999999999999999999999997654 567899999999999887654
No 19
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=95.87 E-value=0.022 Score=45.23 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=57.4
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 028386 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (210)
.||-+.|.|+|..-.....|+....+.++++--.|+.||.|.|-...... ...-|.|.||..|++
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~-k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDN-KKTRIIPRHLQLAIR 89 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEcHHHHHHHHh
Confidence 57888899999987677789999999999999999999999998886653 466899999999988
No 20
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.82 E-value=0.023 Score=45.30 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=57.1
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 028386 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (210)
.||-+.|.|+|..-.....|+....+.++++--.|+.||.|.|-...... ...-|.|.||+.|++
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~-k~krItp~hI~lAI~ 89 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDN-KKTRIIPRHLQLAIR 89 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCceEcHHHHHHHHh
Confidence 57888899999987667789999999999999999999999998886653 466899999999988
No 21
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=95.51 E-value=0.029 Score=43.29 Aligned_cols=69 Identities=7% Similarity=0.112 Sum_probs=53.6
Q ss_pred HhccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 028386 124 RRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (210)
Q Consensus 124 RRS~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (210)
|-..|+++.|+||+... |..+||..+...+..+.+.|+-.|+..|......- .+.-|.+.+|.-|+||.
T Consensus 4 ~d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA-~RKTV~~eDV~lalrr~ 72 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHA-GRKTVEMADVELLMRRQ 72 (111)
T ss_dssp ------CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHHHC
Confidence 34579999999999987 45689999999999999999999999999887654 34467788888888774
No 22
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=95.50 E-value=0.037 Score=45.21 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=56.9
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 028386 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (210)
.||=+.|.|+|..-.....|+....+.++++--.|+.||.|.|-...... ...-|.|.||..|++
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~-krkrItprhI~lAI~ 108 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDN-KKTRIIPRHLQLAIR 108 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCcHHHHHHHHh
Confidence 46777899999987677789999999999999999999999998886653 467899999999988
No 23
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=95.34 E-value=0.048 Score=42.80 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=55.7
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 028386 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (210)
.||=+.|.|+|..-.-...|+....+.++++--.|+.||.|.|-...... ...-|.|.||..|.+
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~-k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDN-KKGRVTPRHILLAVA 86 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhc-CCceEcHHHHHHHHh
Confidence 57778899999886545689999999999999999999999998886543 466899999999988
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=94.99 E-value=0.1 Score=37.58 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=56.7
Q ss_pred ccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 028386 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (210)
Q Consensus 126 S~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (210)
+.||...||++..++ |-..+|+.++..++--.-..+.||+.+|.+++..- .+.-|...+|..|++
T Consensus 5 s~lp~~~v~~iaes~-Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHa-kRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESI-GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHA-KRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHT-TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCeecHHHHHHHHc
Confidence 578999999998885 66689999999999999999999999999998865 355788999988875
No 25
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=94.87 E-value=0.073 Score=42.22 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=55.0
Q ss_pred cCChhHHHHHHHHhcCC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Q 028386 127 ALQKSNMRRLLVSITGS-QKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgs-qsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (210)
.||-+.|.|+|..-... ..|+....+.++++--.|+.||+|.|-..... ....-|.|.||.-|++.
T Consensus 27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~-~k~krItprhi~lAI~n 93 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD-LKVKRITPRHLQLAIRG 93 (128)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCSEECHHHHHHHHHH
T ss_pred cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeEcHHHHHHHHhc
Confidence 57778899999875423 37999999999999999999999999887654 34667999999999883
No 26
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=94.00 E-value=0.19 Score=41.85 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=55.3
Q ss_pred cCChhHHHHHHHHhcCC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 028386 127 ALQKSNMRRLLVSITGS-QKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgs-qsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (210)
.||=+.|+|+|....+. ..|+....+.++++--.|+.||.|.|-...... ...-|.|.||+.|.+
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~-~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDL-KVKRITPRHLQLAIR 170 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccCHHHHHHHHh
Confidence 56777899999886444 489999999999999999999999998876553 466899999999987
No 27
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=93.63 E-value=0.35 Score=35.39 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=58.2
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 028386 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (210)
-|+|.++..|+.+|.++..+.+.+--++.-||=-||-.+++.|..+.+.|+ +..|-++.|.-.+.|-
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~-s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRK-SSTLEVKDVQLHLERQ 71 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEECHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccHHHHHHHHHhh
Confidence 378999999999999998899999999999999999999999999999885 4467777776666553
No 28
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=93.39 E-value=0.38 Score=35.86 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=57.2
Q ss_pred ccCChhHHHHHHHHhcC--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHh
Q 028386 126 SALQKSNMRRLLVSITG--SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKL 196 (210)
Q Consensus 126 S~f~K~~IKRLi~~vtg--sqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~ 196 (210)
.+|++..|.||+..... ..+|+.+.+.+++-+-++||-|-|..|...... .+.+-|.+.||..-+=.|.+
T Consensus 11 ~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~-e~~~~le~e~LEki~pQLlL 82 (84)
T 4dra_E 11 SGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQA-EDALRVDVDQLEKVLPQLLL 82 (84)
T ss_dssp CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcccHHHHHHHHHHHhc
Confidence 48999999999985543 346999999999999999999999999886443 46778999999987766643
No 29
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=93.13 E-value=0.4 Score=35.39 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=57.4
Q ss_pred hccCChhHHHHHHHHhcC--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHh
Q 028386 125 RSALQKSNMRRLLVSITG--SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKL 196 (210)
Q Consensus 125 RS~f~K~~IKRLi~~vtg--sqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~ 196 (210)
...|++..|.||+...-. ..+|+.+.+.+++-+-++||-|-|..|....... +.+-|...||..-+=.|.+
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e-~~~~le~~~LEki~pqLlL 78 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAE-DLEKVDIEHVEKVLPQLLL 78 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCeecHHHHHHHHHHHHh
Confidence 678999999999987654 3468999999999999999999999988875443 4567999999887766643
No 30
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=75.95 E-value=1.3 Score=31.62 Aligned_cols=18 Identities=50% Similarity=0.728 Sum_probs=14.0
Q ss_pred CCchHHHHHHHHHHhc-CC
Q 028386 182 IRPCHIREAYRRLKLE-GK 199 (210)
Q Consensus 182 LqP~HIREA~RRL~~~-Gk 199 (210)
-.-.|||||+|||.++ |+
T Consensus 50 tktahirealrryieeige 68 (70)
T 2q2k_A 50 TKTAHIREALRRYIEEIGE 68 (70)
T ss_dssp CHHHHHHHHHHHHHHHCC-
T ss_pred cchHHHHHHHHHHHHHhcc
Confidence 3467999999999976 54
No 31
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=74.98 E-value=14 Score=30.46 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=53.1
Q ss_pred hhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 028386 130 KSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (210)
Q Consensus 130 K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (210)
+.-|+|++.++.....+|....-+|..|..-++-.|..+|..+... +....|.+.+|+.|+|.+
T Consensus 6 ~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~-~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 6 SSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAY-NKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHh
Confidence 3458999999977778999999999999999999999999888653 356689999999998865
No 32
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=59.28 E-value=9.6 Score=30.04 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCcCCCCCchHHHHHHHHHHhcCC-CCCCCC
Q 028386 166 VETARMVMTERNESGPIRPCHIREAYRRLKLEGK-VPKRSV 205 (210)
Q Consensus 166 VEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~Gk-vp~r~~ 205 (210)
-++.+.+...|...=+=.|. |+++|+.|+.+|- +|..+.
T Consensus 104 k~kil~li~~W~~~f~~~p~-i~~~y~~Lk~~G~~Fp~~~~ 143 (148)
T 1mhq_A 104 KGRVIEILFSWTVWFPEDIK-IRDAYQMLKKQGIIKQDPKL 143 (148)
T ss_dssp HHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTSSCSCCCC
T ss_pred HHHHHHHHHHHHHHcCCCch-HHHHHHHHHHcCCCCCCCCC
Confidence 34455566678765555676 9999999999995 555543
No 33
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=59.11 E-value=26 Score=27.85 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=50.2
Q ss_pred hHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 028386 131 SNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (210)
Q Consensus 131 ~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (210)
.-|.|++.+|-....||....-+|..|..=+.-.|..+|-.+..- +...-|.+..|+-|+|.|.
T Consensus 40 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~-nkr~TitsreIqtAvrLlL 103 (126)
T 1tzy_B 40 IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHY-NKRSTITSREIQTAVRLLL 103 (126)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHhC
Confidence 359999999876667888877778888777777888888777553 3566899999999998764
No 34
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=57.24 E-value=30 Score=27.37 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=49.6
Q ss_pred hHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 028386 131 SNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (210)
Q Consensus 131 ~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (210)
.-|.|++.+|-....||....-+|..|..=+.-.|..+|-.+..- +...-|.+.+|+-|+|.|.
T Consensus 37 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~-nkr~TitsreIqtAvrLlL 100 (123)
T 2nqb_D 37 IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHY-NKRSTITSREIQTAVRLLL 100 (123)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcCCHHHHHHHHHHhC
Confidence 458999999877667888877778887777777787788776553 3566799999999998764
No 35
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=52.03 E-value=28 Score=29.17 Aligned_cols=69 Identities=20% Similarity=0.370 Sum_probs=45.7
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHH----HHHHHHHHHHH-HHHHHhCcCCCCCchHHHHH-------HHHH
Q 028386 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAK----MFVGELVETAR-MVMTERNESGPIRPCHIREA-------YRRL 194 (210)
Q Consensus 127 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaK----vFVGELVEeAr-~Vq~E~~e~gPLqP~HIREA-------~RRL 194 (210)
.++...|.+|+..+ -++.+++++.|... .|.+.+-..|. .++++....||++...+.+| .|+|
T Consensus 132 ~ld~~~iq~llr~v-----~~~~L~~ALKga~~e~~e~il~nmS~Raa~~l~ee~e~~gpvr~~dVe~Aq~~Iv~~~r~L 206 (216)
T 4fhr_B 132 KLDDRSIQLVLREV-----DTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRL 206 (216)
T ss_dssp GSCHHHHHHHHTTS-----CHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhC-----CHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 35555566666544 23578899988654 44455555554 44556677899999988766 5777
Q ss_pred HhcCCC
Q 028386 195 KLEGKV 200 (210)
Q Consensus 195 ~~~Gkv 200 (210)
-..|+|
T Consensus 207 ~~~GeI 212 (216)
T 4fhr_B 207 EEAGEI 212 (216)
T ss_dssp HHTTSC
T ss_pred HHCCCe
Confidence 788875
No 36
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=50.28 E-value=6.5 Score=25.59 Aligned_cols=12 Identities=50% Similarity=0.636 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcC
Q 028386 187 IREAYRRLKLEG 198 (210)
Q Consensus 187 IREA~RRL~~~G 198 (210)
|.||+|||+..|
T Consensus 26 IkEAVrRlq~~~ 37 (39)
T 1gng_X 26 IKEAVRRLHSRR 37 (39)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHcc
Confidence 889999999876
No 37
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=44.25 E-value=16 Score=29.39 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHhcCCC
Q 028386 164 ELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKV 200 (210)
Q Consensus 164 ELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~Gkv 200 (210)
++-++++.+...|...=+=.|. |+++|+.|+.+|-.
T Consensus 114 ~Vk~kil~li~~W~~~f~~~~~-i~~~y~~Lk~~G~~ 149 (171)
T 1juq_A 114 KVKTKVIELLYSWTMALPEEAK-IKDAYHMLKRQGIV 149 (171)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHCCCC
Confidence 4445566667778765444564 99999999999953
No 38
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=42.03 E-value=60 Score=32.79 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=50.8
Q ss_pred CChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Q 028386 128 LQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (210)
Q Consensus 128 f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (210)
||=..|.|++..... ..|+....+-++++--.+..||.|.|=....... ..-|.|.||.-|++.
T Consensus 105 ~pv~~~~~~l~~~~~-~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~-~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 105 LPVEKIHPLLKEVLG-YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIR-HYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCHHHHHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCHHHHHHHHHH
T ss_pred ccHHHHHHHhhcccc-cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcC-CceecCccccccccC
Confidence 666679998855443 5899999999999999999999999977655432 334999999999865
No 39
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=41.12 E-value=91 Score=21.88 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Q 028386 132 NMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (210)
Q Consensus 132 ~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (210)
.|.+|+.+. |-+.+++.++..+.-|+--|+.+|...|......- .+.-|....|+-|.+.
T Consensus 6 ~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HA-grktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHA-RKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHh
Confidence 477888774 66689999999999999999999999999997754 3567888889888764
No 40
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=40.36 E-value=94 Score=22.67 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=33.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHH-----HHHHHHHHhCcCCCCCchHHHHHHHHHHhc
Q 028386 146 ISLPMTIVVCGIAKMFVGELVE-----TARMVMTERNESGPIRPCHIREAYRRLKLE 197 (210)
Q Consensus 146 Vs~nvvIavaGlaKvFVGELVE-----eAr~Vq~E~~e~gPLqP~HIREA~RRL~~~ 197 (210)
.+..-+.+|.+.-|+.||.||. .|.-+.. -.||.|||.+.+++
T Consensus 22 ~~edKIhAmNaYYrsVvstlvqDqltKNAvvlkR---------iqHLdEAY~KVk~e 69 (80)
T 2gsv_A 22 QSEDKIHAMNSYYRSVVSTLVQDQLTKNAVVLKR---------IQHLDEAYNKVKRG 69 (80)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHCSSSCHHHHHHH---------HHHHHHHHHHHHHC
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---------HHHHHHHHHHHHhh
Confidence 3778899999999999999986 2333322 36999999999876
No 41
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=36.29 E-value=1.9e+02 Score=24.99 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 028386 133 MRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (210)
Q Consensus 133 IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (210)
++||+.. .|-..||..+...+.++.|.|+-+|+..|..+.+.. .+.-+.+..|.-|++|+.
T Consensus 167 ~~RlaRr-gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA-~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 167 DEEDGDK-GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHA-KRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp CCTTSCC-TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCSCCHHHHHHHHHHHH
T ss_pred HHHHhhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCcHHHHHHHHHhcC
Confidence 3344433 244578999999999999999999999999997754 455688999999999875
No 42
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=35.50 E-value=31 Score=27.27 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCcCCCCCchHHHHHHHHHHhcCCC
Q 028386 165 LVETARMVMTERNESGPIRPCHIREAYRRLKLEGKV 200 (210)
Q Consensus 165 LVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~Gkv 200 (210)
+-++.+.+...|...=|=.|. |.++|+.|+.+|-+
T Consensus 113 Vk~kil~li~~W~~~f~~~p~-i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 113 VKNKILELLYSWTVGLPEEVK-IAEAYQMLKKQGIV 147 (149)
T ss_dssp HHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCch-HHHHHHHHHHCcCc
Confidence 334555666678654444565 99999999999965
No 43
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=34.22 E-value=53 Score=24.68 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHhcCC--CCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 028386 128 LQKSNMRRLLVSITGS--QKISLPMTIVVCGIAKMFVGELVETARM 171 (210)
Q Consensus 128 f~K~~IKRLi~~vtgs--qsVs~nvvIavaGlaKvFVGELVEeAr~ 171 (210)
+|+..|-||+.....+ .+|+...+.+++-+-++||-|-|-.|..
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e 47 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQ 47 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888988644322 2588899999999999999999987743
No 44
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=32.26 E-value=48 Score=28.95 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=45.4
Q ss_pred CChhHHHHHHHHhcCCCCCCccHHHHHHHHH----HHHHHHHHHHHH-HHHHHhCcCCCCCchHHHHH-------HHHHH
Q 028386 128 LQKSNMRRLLVSITGSQKISLPMTIVVCGIA----KMFVGELVETAR-MVMTERNESGPIRPCHIREA-------YRRLK 195 (210)
Q Consensus 128 f~K~~IKRLi~~vtgsqsVs~nvvIavaGla----KvFVGELVEeAr-~Vq~E~~e~gPLqP~HIREA-------~RRL~ 195 (210)
+....|.+|+..|. ++.+++++.|-. ..|..-+-..|. .++++....||++...+.+| .|+|-
T Consensus 190 lddr~iq~llreV~-----~~~L~~ALKGa~~elrekil~nmS~Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~R~L~ 264 (279)
T 3pkr_A 190 LDNFAIREILKVAD-----KKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQ 264 (279)
T ss_dssp SCHHHHHHHHHHSC-----HHHHHHHTTTSCHHHHHHHHTTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCC-----HHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34445555555541 357888887755 455555555554 45666677999999998876 67888
Q ss_pred hcCCC
Q 028386 196 LEGKV 200 (210)
Q Consensus 196 ~~Gkv 200 (210)
.+|+|
T Consensus 265 e~GeI 269 (279)
T 3pkr_A 265 EKGVI 269 (279)
T ss_dssp HTTSS
T ss_pred HCCCE
Confidence 88875
No 45
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=30.93 E-value=62 Score=25.65 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCcCCCCCc--hHHHHHHHHHHhcCC-CCCC
Q 028386 164 ELVETARMVMTERNESGPIRP--CHIREAYRRLKLEGK-VPKR 203 (210)
Q Consensus 164 ELVEeAr~Vq~E~~e~gPLqP--~HIREA~RRL~~~Gk-vp~r 203 (210)
++-++++.+...|.+.=+=.| ..|+++|+.|+.+|- +|..
T Consensus 111 ~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~ 153 (163)
T 1x5b_A 111 KVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITFPPA 153 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHHHTTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCCCCCCC
Confidence 445556666677875433344 479999999999995 4544
No 46
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=30.72 E-value=85 Score=27.89 Aligned_cols=68 Identities=21% Similarity=0.435 Sum_probs=44.9
Q ss_pred CChhHHHHHHHHhcCCCCCCccHHHHHHHHH----HHHHHHHHHHHH-HHHHHhCcCCCCCchHHHHH-------HHHHH
Q 028386 128 LQKSNMRRLLVSITGSQKISLPMTIVVCGIA----KMFVGELVETAR-MVMTERNESGPIRPCHIREA-------YRRLK 195 (210)
Q Consensus 128 f~K~~IKRLi~~vtgsqsVs~nvvIavaGla----KvFVGELVEeAr-~Vq~E~~e~gPLqP~HIREA-------~RRL~ 195 (210)
+....|.+|+..| -++.+++++.|-. ..|..-+-..|. .++++....||++...+.+| .|+|-
T Consensus 246 lddr~iq~llrev-----~~~~L~~ALKga~~elrekil~nmS~Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~r~L~ 320 (329)
T 3hjl_A 246 LSDRDIIEILKVV-----DKNTLMIALLGAPEDIKQKFLSNMSKRAAKLFLEDMEALGPVKKSEIEKAQRQVVNIIRKMI 320 (329)
T ss_dssp SCHHHHHHHHTTS-----CHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhC-----CHHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444455555443 2457889998754 455556666554 45666777999999998876 56777
Q ss_pred hcCCC
Q 028386 196 LEGKV 200 (210)
Q Consensus 196 ~~Gkv 200 (210)
.+|+|
T Consensus 321 e~GeI 325 (329)
T 3hjl_A 321 DEGKI 325 (329)
T ss_dssp TSSSC
T ss_pred HCCCe
Confidence 77875
No 47
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=29.25 E-value=1.5e+02 Score=21.36 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=47.7
Q ss_pred CChhHHHHHHHHh----cCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Q 028386 128 LQKSNMRRLLVSI----TGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (210)
Q Consensus 128 f~K~~IKRLi~~v----tgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (210)
++|.-.-||+..+ .+...++...+.++.-.+-.|+-.|-|.|-..... ..+--|.|+.|+-|.|-
T Consensus 4 i~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~H-AkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 4 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIH-AKRVTIMPKDIQLARRI 72 (77)
T ss_dssp SCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccCcHhhHHHHHHH
Confidence 4555555655555 34456778888899999999999999998766543 34668999999998653
No 48
>4afj_X Proto-oncogene FRAT1; transferase-peptide complex, kinase; HET: PTR SJJ; 1.98A {Homo sapiens} PDB: 3zrk_X* 3zrl_X* 3zrm_X*
Probab=29.19 E-value=14 Score=22.86 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhcC
Q 028386 186 HIREAYRRLKLEG 198 (210)
Q Consensus 186 HIREA~RRL~~~G 198 (210)
-|+||+|||+..+
T Consensus 16 likeAvrrl~sr~ 28 (30)
T 4afj_X 16 LIKEAVRRLHSRR 28 (30)
T ss_dssp HHHHHHHHTCC--
T ss_pred hHHHHHHHHHHhc
Confidence 3889999988654
No 49
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=27.64 E-value=1.2e+02 Score=24.23 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=36.3
Q ss_pred HHHHhccCChhHHHHHHHHhcCCCCC--Cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Q 028386 121 ESFRRSALQKSNMRRLLVSITGSQKI--SL---PMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (210)
Q Consensus 121 E~fRRS~f~K~~IKRLi~~vtgsqsV--s~---nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (210)
..||.+. +...|++|...+..+..+ .. .-+.+|+|+-|.|+-+| ..||-|..+.+.|..
T Consensus 55 GIfR~~G-~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~va~lLK~flreL-------------PePLl~~~l~~~~~~ 118 (214)
T 3byi_A 55 GIYRVSG-NLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFREL-------------PEPLFPYSFFEQFVE 118 (214)
T ss_dssp TTTTSCC-CHHHHHHHHHHHHTTCCCCTTSGGGCSHHHHHHHHHHHHHHS-------------SSCSSCHHHHHHHHH
T ss_pred CccccCC-CHHHHHHHHHHHhcCCCCCCCcccccchHHHHHHHHHHHHhC-------------CCCCCCHHHHHHHHH
Confidence 5788877 466677776554322222 11 13577899999999876 346666665554433
No 50
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=26.70 E-value=1e+02 Score=24.76 Aligned_cols=39 Identities=10% Similarity=0.202 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 028386 157 IAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (210)
Q Consensus 157 laKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (210)
=+|-||.+|+...|.+..+.-...++-+..|+..+..|+
T Consensus 83 eak~Fv~kli~~~r~l~~~~~~G~k~~~~~lK~~~~~yk 121 (140)
T 2w9y_A 83 AAVEYAKKLIHMVTTTLCSLTVGKPIDDADAKRLHQEFQ 121 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 378999999999999988876677888888887776665
No 51
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=24.83 E-value=2.5e+02 Score=21.85 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 028386 145 KISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (210)
Q Consensus 145 sVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (210)
.||..+...+.++.|.|+-+|+..|....+. ..+.-+...+|.-|++|.
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaeh-A~RKTVta~DV~~Alkr~ 112 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEH-AKRKTVTSLDVVYALKRQ 112 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCBCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcCcHHHHHHHHHhC
Confidence 5788999999999999999999999999764 456788888998888764
No 52
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=24.50 E-value=57 Score=30.33 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=26.4
Q ss_pred hcCCHHHHHHHHHHHhccCChhHHHHHHHHh
Q 028386 110 NQFTEDQMNRYESFRRSALQKSNMRRLLVSI 140 (210)
Q Consensus 110 ~~fteEQl~RYE~fRRS~f~K~~IKRLi~~v 140 (210)
..||+++..||..||+..|...++..+++.+
T Consensus 417 ~~l~~~e~~~w~~~~~~~l~~~~~~~~~~~~ 447 (482)
T 2qxf_A 417 GTLDYAEQQRWLEHRRQVFTPEFLQGYADEL 447 (482)
T ss_dssp GGCCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5799999999999999999988777776554
No 53
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=23.38 E-value=1.4e+02 Score=19.31 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 028386 133 MRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMV 172 (210)
Q Consensus 133 IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~V 172 (210)
|+.+|=..=..+.+.+..+.+|--|-.-||-+|+-+|.+|
T Consensus 6 i~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~v 45 (45)
T 1bh9_A 6 LRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45 (45)
T ss_dssp HHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777654422344555677788888888888888888754
No 54
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=23.17 E-value=1.3e+02 Score=24.72 Aligned_cols=44 Identities=30% Similarity=0.369 Sum_probs=28.4
Q ss_pred HHHHhccCChhHHHHHHHHhcCCCCCCc----cHHHHHHHHHHHHHHHH
Q 028386 121 ESFRRSALQKSNMRRLLVSITGSQKISL----PMTIVVCGIAKMFVGEL 165 (210)
Q Consensus 121 E~fRRS~f~K~~IKRLi~~vtgsqsVs~----nvvIavaGlaKvFVGEL 165 (210)
..||.+. +...|++|...+.-+..+.- .-+.+|+|+-|.|+-+|
T Consensus 88 GIFR~sG-~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~lLK~fLReL 135 (246)
T 3fk2_A 88 GIYRVSG-NKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSEL 135 (246)
T ss_dssp TTTTSCC-CHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHHHHHHHHHS
T ss_pred CeeEeCC-cHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHHhC
Confidence 5788777 46678877665532222221 13567899999999776
No 55
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=22.59 E-value=1.1e+02 Score=24.10 Aligned_cols=38 Identities=16% Similarity=0.440 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHH---HHHHHhccCChhHHHHHHHH
Q 028386 99 PAKMAKMQAILNQFTEDQMNR---YESFRRSALQKSNMRRLLVS 139 (210)
Q Consensus 99 ~e~~~km~~Ll~~fteEQl~R---YE~fRRS~f~K~~IKRLi~~ 139 (210)
+.+..++.+++.+||+++.+. -+.+.. +-+-++||...
T Consensus 57 e~~lkr~eaII~SMT~~Er~n~~~P~ii~~---~~SRk~RIA~G 97 (129)
T 1mfq_C 57 MARLKKLMTIMDSMNDQELDSTDGAKVFSK---QPGRIQRVARG 97 (129)
T ss_dssp HHHHHHHHHHHTTSCHHHHTCTTHHHHHHH---CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHhcCCCcccccC---ChHHHHHHHcc
Confidence 445578999999999999998 777732 23456777533
No 56
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=22.18 E-value=1.1e+02 Score=23.39 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=44.2
Q ss_pred HHHHHHHhcC--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 028386 133 MRRLLVSITG--SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (210)
Q Consensus 133 IKRLi~~vtg--sqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (210)
|.||+....- +..+++.++.+|.-++--|+.+|-..|......- .+.-|.+..|+-|.||.
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HA-gRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHA-KRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCcCCHHHHHHHHHhC
Confidence 6777766532 2468999999999999999988888888776653 33456777777776653
No 57
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=22.10 E-value=86 Score=25.02 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=27.8
Q ss_pred HHHHhccCChhHHHHHHHHhcCCCCCCc----cHHHHHHHHHHHHHHHH
Q 028386 121 ESFRRSALQKSNMRRLLVSITGSQKISL----PMTIVVCGIAKMFVGEL 165 (210)
Q Consensus 121 E~fRRS~f~K~~IKRLi~~vtgsqsVs~----nvvIavaGlaKvFVGEL 165 (210)
..||.+.- +..|++|...+.-+..+.- .-+.+++++-|.|+-+|
T Consensus 47 GIfR~~g~-~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lLK~flreL 94 (209)
T 2ee4_A 47 GLYRVSGN-KTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADL 94 (209)
T ss_dssp TTTTSCCC-HHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHHHHHHHHS
T ss_pred CccccCCC-HHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHhC
Confidence 56888774 5667777555432222221 12567899999999876
No 58
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=22.02 E-value=1.7e+02 Score=23.02 Aligned_cols=13 Identities=8% Similarity=0.368 Sum_probs=7.6
Q ss_pred HHhcCCHHHHHHH
Q 028386 108 ILNQFTEDQMNRY 120 (210)
Q Consensus 108 Ll~~fteEQl~RY 120 (210)
=|.+||.+++++|
T Consensus 13 hl~~l~d~el~~r 25 (121)
T 3kp1_E 13 HLANLSDEELQTR 25 (121)
T ss_dssp GGTTCCHHHHHHH
T ss_pred HHHhCCHHHHHHH
Confidence 4566666666543
No 59
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=21.55 E-value=62 Score=24.89 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCcCCCCCch--HHHHHHHHHHhcCC
Q 028386 165 LVETARMVMTERNESGPIRPC--HIREAYRRLKLEGK 199 (210)
Q Consensus 165 LVEeAr~Vq~E~~e~gPLqP~--HIREA~RRL~~~Gk 199 (210)
+-++.+.+...|.+.=+=.|. .|.++|+.|+.+|-
T Consensus 101 Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~ 137 (140)
T 3ldz_A 101 VCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQGV 137 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHccC
Confidence 344556666678653333343 69999999999995
No 60
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=21.47 E-value=1.7e+02 Score=22.12 Aligned_cols=38 Identities=13% Similarity=0.419 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHH---HHHHHhccCChhHHHHHHHH
Q 028386 99 PAKMAKMQAILNQFTEDQMNR---YESFRRSALQKSNMRRLLVS 139 (210)
Q Consensus 99 ~e~~~km~~Ll~~fteEQl~R---YE~fRRS~f~K~~IKRLi~~ 139 (210)
+.+..++.+++.+||+++.+. -+.+..+ -+-.+||...
T Consensus 44 ~~~lkr~~aII~SMT~~Er~~~~~P~ii~~~---~SR~~RIA~G 84 (109)
T 1qb2_A 44 MARLKKLMTIMDSMNDQELDSTDGAKVFSKQ---PGRIQRVARG 84 (109)
T ss_dssp HHHHHHHHHHHTTSCHHHHHSTTTHHHHHHS---THHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHhcCCCccccccc---hHHHHHHHcc
Confidence 445578999999999999998 8887521 2346777533
No 61
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=20.68 E-value=1.2e+02 Score=24.00 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCcCCCC--CchHHHHHHHHHHhcC
Q 028386 164 ELVETARMVMTERNESGPI--RPCHIREAYRRLKLEG 198 (210)
Q Consensus 164 ELVEeAr~Vq~E~~e~gPL--qP~HIREA~RRL~~~G 198 (210)
++-++.+.+...|...=+= .=..|.++|+.|+.+|
T Consensus 116 ~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 116 DIQNRILNFIKTWSQGFPGGVDVSEVKEVYLDLVKKG 152 (152)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHCc
Confidence 3446777778889653222 3468999999999987
No 62
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=20.67 E-value=1e+02 Score=26.84 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=24.0
Q ss_pred HHHHHhccCChh----HHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 028386 120 YESFRRSALQKS----NMRRLLVSITGSQKISLPMTIVVCGIAKMFV 162 (210)
Q Consensus 120 YE~fRRS~f~K~----~IKRLi~~vtgsqsVs~nvvIavaGlaKvFV 162 (210)
|+.|-+.-.+|. +|+||.++|.|+..--+.---.+-.+++||+
T Consensus 138 y~dyv~~~~~~p~~~~kirRla~svyg~p~Q~papeef~~ava~v~~ 184 (242)
T 3zed_D 138 YEDYVRKPITRPTDMDKIRRLANSVYGLPHQEPAPDDFYQAVVEVFA 184 (242)
T ss_pred HHHhhccccCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence 333555444444 7999999999874311112223345566664
No 63
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.62 E-value=78 Score=26.16 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCcCCCCCc--hHHHHHHHHHHhcCCC
Q 028386 164 ELVETARMVMTERNESGPIRP--CHIREAYRRLKLEGKV 200 (210)
Q Consensus 164 ELVEeAr~Vq~E~~e~gPLqP--~HIREA~RRL~~~Gkv 200 (210)
++-++++.+...|.+.=+=.| ..|.++|+.|+.+|-.
T Consensus 104 ~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~ 142 (226)
T 3zyq_A 104 NVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHV 142 (226)
T ss_dssp HHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCC
Confidence 345567777778865322234 3699999999999963
No 64
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=20.17 E-value=49 Score=19.48 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 028386 155 CGIAKMFVGELVE 167 (210)
Q Consensus 155 aGlaKvFVGELVE 167 (210)
.-+.|-|||||..
T Consensus 10 kkfgkawvgeimn 22 (26)
T 1dum_A 10 KKFGKAWVGEIMN 22 (26)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHh
Confidence 4578999999863
No 65
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=20.16 E-value=49 Score=23.45 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 028386 101 KMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVS 139 (210)
Q Consensus 101 ~~~km~~Ll~~fteEQl~RYE~fRRS~f~K~~IKRLi~~ 139 (210)
+..++.+++.+||+++.+.-+. |+-+-.+||...
T Consensus 11 ~lkr~~aII~SMT~~Er~nP~i-----i~~SR~~RIA~G 44 (69)
T 1dul_A 11 VLVRMEAIINSMTMKERAKPEI-----IKGSRKRRIAAG 44 (69)
T ss_dssp HHHHHHHHHHTSCHHHHHCGGG-----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHhCccc-----cCHHHHHHHHcc
Confidence 4578899999999999986544 455667887543
No 66
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=20.15 E-value=2.3e+02 Score=20.83 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=44.1
Q ss_pred HHHHHHHhcCC--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Q 028386 133 MRRLLVSITGS--QKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (210)
Q Consensus 133 IKRLi~~vtgs--qsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (210)
|-||+...... -.||+.++.++.-+.--|+.+|-..+...... ..+.-|.+..|.-|.||
T Consensus 18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~H-AgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARH-AGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccCHHHHHHHHHh
Confidence 56677776432 35888888888888888888887777666554 34567888888888776
Done!