Query 028387
Match_columns 210
No_of_seqs 145 out of 1784
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 10:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 100.0 4.9E-27 1.1E-31 190.7 18.4 152 52-204 24-176 (489)
2 PLN02687 flavonoid 3'-monooxyg 99.9 6.7E-26 1.4E-30 187.7 17.0 155 50-206 30-184 (517)
3 PLN00110 flavonoid 3',5'-hydro 99.9 1.6E-24 3.5E-29 178.8 18.2 167 38-205 15-181 (504)
4 PLN03234 cytochrome P450 83B1; 99.9 1.5E-24 3.3E-29 179.0 18.0 161 47-207 21-181 (499)
5 PTZ00404 cytochrome P450; Prov 99.9 4.4E-25 9.5E-30 181.5 14.7 158 46-207 21-178 (482)
6 PLN03112 cytochrome P450 famil 99.9 1.4E-24 2.9E-29 179.9 16.8 163 43-206 21-183 (514)
7 PLN02971 tryptophan N-hydroxyl 99.9 2.7E-24 5.9E-29 178.9 18.0 162 46-207 49-212 (543)
8 PLN00168 Cytochrome P450; Prov 99.9 3.1E-24 6.6E-29 177.9 16.8 153 51-205 32-188 (519)
9 PLN02394 trans-cinnamate 4-mon 99.9 7.3E-24 1.6E-28 175.1 18.3 158 49-206 25-183 (503)
10 PLN02966 cytochrome P450 83A1 99.9 3.9E-24 8.5E-29 176.6 15.0 161 47-207 22-182 (502)
11 PLN02183 ferulate 5-hydroxylas 99.9 8.9E-24 1.9E-28 175.0 16.5 155 48-206 30-184 (516)
12 KOG0158 Cytochrome P450 CYP3/C 99.9 2.1E-23 4.6E-28 168.1 13.7 164 43-209 20-186 (499)
13 PLN02290 cytokinin trans-hydro 99.9 9.7E-24 2.1E-28 174.9 11.9 161 44-207 32-211 (516)
14 PLN02196 abscisic acid 8'-hydr 99.9 7.2E-23 1.6E-27 167.5 14.3 148 49-205 30-177 (463)
15 PLN02655 ent-kaurene oxidase 99.9 2.5E-22 5.3E-27 164.5 14.6 152 56-207 1-154 (466)
16 PLN02500 cytochrome P450 90B1 99.9 2.4E-22 5.1E-27 165.6 13.7 150 49-206 33-187 (490)
17 PLN02774 brassinosteroid-6-oxi 99.9 9.1E-22 2E-26 161.1 13.1 145 50-203 27-172 (463)
18 PLN03018 homomethionine N-hydr 99.9 1.3E-20 2.7E-25 156.4 18.1 153 54-207 40-195 (534)
19 KOG0157 Cytochrome P450 CYP4/C 99.9 1.1E-20 2.3E-25 155.5 13.3 152 52-207 33-186 (497)
20 PLN02302 ent-kaurenoic acid ox 99.8 6.9E-20 1.5E-24 151.0 16.9 149 49-206 37-192 (490)
21 PLN02169 fatty acid (omega-1)- 99.8 7.3E-20 1.6E-24 151.0 13.8 153 51-207 28-187 (500)
22 PF00067 p450: Cytochrome P450 99.8 1.1E-20 2.4E-25 153.5 7.1 149 56-207 1-153 (463)
23 PLN03195 fatty acid omega-hydr 99.8 2.3E-19 5E-24 148.8 14.1 147 55-207 31-182 (516)
24 PLN03141 3-epi-6-deoxocathaste 99.8 1.3E-19 2.7E-24 148.1 11.4 149 50-206 3-156 (452)
25 PLN02987 Cytochrome P450, fami 99.8 5.8E-19 1.3E-23 144.6 13.5 146 48-203 24-174 (472)
26 PLN02738 carotene beta-ring hy 99.8 1.9E-18 4.2E-23 145.5 12.5 138 66-207 143-280 (633)
27 PLN02936 epsilon-ring hydroxyl 99.8 2E-18 4.3E-23 142.3 11.3 149 55-207 13-166 (489)
28 PLN02648 allene oxide synthase 99.8 5.1E-19 1.1E-23 144.7 7.2 150 52-207 15-183 (480)
29 KOG0159 Cytochrome P450 CYP11/ 99.7 1.5E-16 3.2E-21 127.0 10.6 156 49-206 45-211 (519)
30 PLN02426 cytochrome P450, fami 99.6 7.1E-14 1.5E-18 115.6 16.5 139 62-207 49-193 (502)
31 KOG0684 Cytochrome P450 [Secon 99.4 3.9E-12 8.6E-17 100.1 12.7 126 54-182 31-157 (486)
32 COG2124 CypX Cytochrome P450 [ 98.9 6.7E-09 1.4E-13 84.1 8.6 126 76-207 24-153 (411)
33 PTZ00370 STEVOR; Provisional 75.9 3.6 7.7E-05 31.6 3.2 18 34-51 269-286 (296)
34 KOG0114 Predicted RNA-binding 70.0 27 0.00059 22.7 5.6 57 56-115 14-76 (124)
35 PF13625 Helicase_C_3: Helicas 48.8 41 0.00089 22.5 4.2 40 74-115 74-113 (129)
36 PF13893 RRM_5: RNA recognitio 48.3 45 0.00098 18.2 4.8 35 81-115 2-40 (56)
37 PF14004 DUF4227: Protein of u 44.2 69 0.0015 19.1 4.9 33 28-60 12-44 (71)
38 PLN03134 glycine-rich RNA-bind 42.2 1.1E+02 0.0023 21.0 5.5 49 64-115 38-95 (144)
39 PTZ00370 STEVOR; Provisional 40.9 71 0.0015 24.8 4.7 20 32-51 263-282 (296)
40 PLN03120 nucleic acid binding 38.1 1.8E+02 0.004 22.4 6.5 50 75-124 16-71 (260)
41 PF14198 TnpV: Transposon-enco 34.6 1.1E+02 0.0024 20.0 4.4 39 148-186 34-72 (111)
42 KOG3653 Transforming growth fa 34.6 2.2E+02 0.0048 24.2 6.8 35 86-120 222-256 (534)
43 PHA03049 IMV membrane protein; 33.4 1E+02 0.0023 18.0 4.2 17 51-67 28-44 (68)
44 KOG0107 Alternative splicing f 30.2 1.1E+02 0.0023 22.1 3.9 47 64-113 14-64 (195)
45 TIGR01661 ELAV_HUD_SF ELAV/HuD 27.8 2.2E+02 0.0049 22.4 6.0 58 63-123 272-339 (352)
46 PRK10597 DNA damage-inducible 26.9 1.6E+02 0.0035 18.1 4.5 38 78-115 24-69 (81)
47 PF08780 NTase_sub_bind: Nucle 26.8 1.8E+02 0.0039 19.4 4.4 35 136-173 71-108 (124)
48 PF09926 DUF2158: Uncharacteri 25.9 78 0.0017 17.7 2.2 18 87-104 3-20 (53)
49 COG1707 ACT domain-containing 25.8 89 0.0019 22.2 2.9 38 73-110 153-195 (218)
50 smart00362 RRM_2 RNA recogniti 25.8 1.2E+02 0.0027 16.5 6.1 41 75-115 11-58 (72)
51 KOG3027 Mitochondrial outer me 25.5 1.3E+02 0.0029 22.3 3.7 42 144-186 155-196 (257)
52 smart00360 RRM RNA recognition 23.8 1.3E+02 0.0029 16.2 4.9 40 76-115 9-57 (71)
53 PLN02196 abscisic acid 8'-hydr 23.5 1.7E+02 0.0036 24.4 4.7 9 48-56 32-40 (463)
54 PRK14584 hmsS hemin storage sy 23.4 2.3E+02 0.0049 19.9 4.4 22 34-55 73-94 (153)
55 PRK02302 hypothetical protein; 23.2 2E+02 0.0044 18.1 3.8 39 84-122 23-62 (89)
56 cd01670 Death Death Domain: a 23.0 1.7E+02 0.0037 17.1 3.8 41 145-188 10-53 (79)
57 PF07912 ERp29_N: ERp29, N-ter 22.8 2.5E+02 0.0054 18.9 6.1 43 80-122 70-124 (126)
58 PF03460 NIR_SIR_ferr: Nitrite 22.8 1.6E+02 0.0036 16.8 3.7 38 75-113 24-63 (69)
59 cd08777 Death_RIP1 Death Domai 21.7 2.1E+02 0.0046 17.7 4.7 41 145-188 13-58 (86)
60 PF02009 Rifin_STEVOR: Rifin/s 21.6 1.1E+02 0.0025 24.0 3.1 16 37-52 269-284 (299)
61 PF15269 zf-C2H2_7: Zinc-finge 21.5 1.5E+02 0.0032 15.9 3.4 21 51-71 6-26 (54)
62 COG5329 Phosphoinositide polyp 21.0 1.1E+02 0.0023 26.5 2.9 25 76-100 295-319 (570)
63 PF05172 Nup35_RRM: Nup53/35/4 20.9 2.2E+02 0.0049 18.2 3.8 48 74-121 16-79 (100)
64 PRK02886 hypothetical protein; 20.8 2.3E+02 0.005 17.7 3.8 32 84-115 21-52 (87)
65 PF00076 RRM_1: RNA recognitio 20.6 1.7E+02 0.0037 16.2 5.6 42 74-115 9-58 (70)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=4.9e-27 Score=190.65 Aligned_cols=152 Identities=38% Similarity=0.683 Sum_probs=131.8
Q ss_pred CCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCC-ChhHH
Q 028387 52 HLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPK-TTPAN 130 (210)
Q Consensus 52 ~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~-~~~~~ 130 (210)
+.+.||||+++|++||++++....++..+.+|.++|||++.+|+|..|+|+++|+++++|++++++..|.+||. .....
T Consensus 24 ~~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~ 103 (489)
T KOG0156|consen 24 RRNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLK 103 (489)
T ss_pred CCCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHH
Confidence 38889999999999999999444599999999999999999999999999999999999999999999999997 23446
Q ss_pred HhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcc
Q 028387 131 ILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSS 204 (210)
Q Consensus 131 ~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~ 204 (210)
.+..++.|++++.+|+.||.+||+.....|+.+.+++..+.-.++++.+++.+.+ ...+..+|+...+...+.
T Consensus 104 ~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~-~~~~~~vdl~~~l~~~~~ 176 (489)
T KOG0156|consen 104 YLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK-SKKGEPVDLSELLDLLVG 176 (489)
T ss_pred HhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh-cCCCceeeHHHHHHHHHH
Confidence 6666688999998899999999999888999999999988779999999999988 322267888776665543
No 2
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.94 E-value=6.7e-26 Score=187.65 Aligned_cols=155 Identities=35% Similarity=0.668 Sum_probs=128.8
Q ss_pred CCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhH
Q 028387 50 SNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPA 129 (210)
Q Consensus 50 ~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~ 129 (210)
.++.+.||||+++|++||+..+ ..+++..+.+|.++||+++++++|+.++++++||+++++++.++...|.+++.....
T Consensus 30 ~~~~~~pPgp~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~ 108 (517)
T PLN02687 30 KHKRPLPPGPRGWPVLGNLPQL-GPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGA 108 (517)
T ss_pred CCCCCCCccCCCCCccccHHhc-CCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccch
Confidence 3445678999999999999888 567899999999999999999999999999999999999999888788887654443
Q ss_pred HHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 130 NILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 130 ~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
..+...+.+++++.+|+.|+++||++.+++|+.++++++.+.+.++++++++.|++.. +++.+|+.+.+..++.++
T Consensus 109 ~~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~~~vd~~~~~~~~t~dv 184 (517)
T PLN02687 109 EHMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQH-GTAPVNLGQLVNVCTTNA 184 (517)
T ss_pred hhhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhc-CCCceeHHHHHHHHHHHH
Confidence 4443334567788789999999999932899999999999999999999999998753 345688888777776554
No 3
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.93 E-value=1.6e-24 Score=178.76 Aligned_cols=167 Identities=30% Similarity=0.529 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCC
Q 028387 38 TLVQLLKITRRSSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHD 117 (210)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~ 117 (210)
++..++.+........+.||||+++|++|+++.+ ...++.++.+++++||+++++++|+++.|+++||+++++++.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~pPgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~ 93 (504)
T PLN00110 15 FITRFFIRSLLPKPSRKLPPGPRGWPLLGALPLL-GNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLD 93 (504)
T ss_pred HHHHHHHHHHhhcccCCCcccCCCCCeeechhhc-CCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcc
Confidence 3333355555666777889999999999999887 566889999999999999999999999999999999999999888
Q ss_pred CCCCCCCCChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 028387 118 IVISNRPKTTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRN 197 (210)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~ 197 (210)
..|.+++...........+.+.+++.+|+.|+++||.++.++|+.++++.+.+.+.++++.+++.+.+...+++.+++.+
T Consensus 94 ~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~ 173 (504)
T PLN00110 94 INFSNRPPNAGATHLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPE 173 (504)
T ss_pred hhhcCCCCccchhhhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHH
Confidence 78887765332222222234566777799999999999435899999999999999999999999987554555677777
Q ss_pred hhhhhccc
Q 028387 198 CQTSLSSG 205 (210)
Q Consensus 198 ~~~~~~~~ 205 (210)
.+..++.+
T Consensus 174 ~~~~~~~~ 181 (504)
T PLN00110 174 MLTFSMAN 181 (504)
T ss_pred HHHHHHHH
Confidence 66655433
No 4
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.93 E-value=1.5e-24 Score=178.95 Aligned_cols=161 Identities=35% Similarity=0.606 Sum_probs=130.7
Q ss_pred HhCCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCC
Q 028387 47 RRSSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKT 126 (210)
Q Consensus 47 ~~~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~ 126 (210)
...+++.+.||||+++|++||+..+...+++.++.+++++||+++++++|+.++++++|||++++++.++...|.+++..
T Consensus 21 ~~~~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~ 100 (499)
T PLN03234 21 STTKKSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLL 100 (499)
T ss_pred HhcCCCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCc
Confidence 33446667899999999999999884446888999999999999999999999999999999999999888888887754
Q ss_pred hhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 127 TPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
.........+.++.+...++.|+++||.+..++|+.++++.+.+.+.++++++++.|.+..++++.+|+.+....++.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t~dv 180 (499)
T PLN03234 101 KGQQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTVDLSELLLSFTNCV 180 (499)
T ss_pred hhhhhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHHHHH
Confidence 33333332244555566689999999985369999999999999999999999999987666666788888777776554
Q ss_pred c
Q 028387 207 V 207 (210)
Q Consensus 207 ~ 207 (210)
+
T Consensus 181 i 181 (499)
T PLN03234 181 V 181 (499)
T ss_pred H
Confidence 3
No 5
>PTZ00404 cytochrome P450; Provisional
Probab=99.93 E-value=4.4e-25 Score=181.46 Aligned_cols=158 Identities=30% Similarity=0.465 Sum_probs=129.0
Q ss_pred HHhCCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCC
Q 028387 46 TRRSSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPK 125 (210)
Q Consensus 46 ~~~~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~ 125 (210)
..+.+.+.+.+|||+++|++||+..+ ..+++..+.+|+++||+++++++++.++++++||+++++++.++...|.+++.
T Consensus 21 ~~~~~~~~~~~pgp~~~p~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~ 99 (482)
T PTZ00404 21 KKYKKIHKNELKGPIPIPILGNLHQL-GNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPK 99 (482)
T ss_pred HHhhhccCCCCCCCCCCCeeccHhhh-cccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCC
Confidence 33344667789999999999999888 56789999999999999999999999999999999999999887766766654
Q ss_pred ChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccc
Q 028387 126 TTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSG 205 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~ 205 (210)
...... ...+.|++ +.+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|++..++++.+|+...+..++.+
T Consensus 100 ~~~~~~-~~~~~~l~-~~~g~~w~~~Rk~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d 176 (482)
T PTZ00404 100 IPSIKH-GTFYHGIV-TSSGEYWKRNREIV-GKAMRKTNLKHIYDLLDDQVDVLIESMKKIESSGETFEPRYYLTKFTMS 176 (482)
T ss_pred cceeee-eccCCcee-ccChHHHHHHHHHH-HHHHhhhccccHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHH
Confidence 332211 11255655 45699999999999 7999999999999999999999999998765555668888888777766
Q ss_pred cc
Q 028387 206 KV 207 (210)
Q Consensus 206 t~ 207 (210)
++
T Consensus 177 vi 178 (482)
T PTZ00404 177 AM 178 (482)
T ss_pred HH
Confidence 54
No 6
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.93 E-value=1.4e-24 Score=179.87 Aligned_cols=163 Identities=33% Similarity=0.657 Sum_probs=129.2
Q ss_pred HHHHHhCCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCC
Q 028387 43 LKITRRSSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISN 122 (210)
Q Consensus 43 ~~~~~~~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~ 122 (210)
.+.+++..++.+.||||+++|++||+..+ ..+++..+.+++++||+++++++++.+.++++||+++++++.+++..|.+
T Consensus 21 ~~~~~~~~~~~~~ppgp~~~pl~G~~~~~-~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~ 99 (514)
T PLN03112 21 RWLNASMRKSLRLPPGPPRWPIVGNLLQL-GPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFAS 99 (514)
T ss_pred HHccccccCCCCCccCCCCCCeeeeHHhc-CCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCccccc
Confidence 34445556667889999999999999887 56788999999999999999999999999999999999999988888887
Q ss_pred CCCChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhh
Q 028387 123 RPKTTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSL 202 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~ 202 (210)
++..........+..+++++.+|+.|+++||++.+++|+.++++.+.+.+.++++.+++.+.+....++.+|+.+.+..+
T Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~~~ 179 (514)
T PLN03112 100 RPRTLAAVHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLGAF 179 (514)
T ss_pred CCCcccceeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHHHH
Confidence 76532211111112234566679999999999646799999999999999999999999877654445568887777766
Q ss_pred cccc
Q 028387 203 SSGK 206 (210)
Q Consensus 203 ~~~t 206 (210)
+.++
T Consensus 180 ~~~v 183 (514)
T PLN03112 180 SMNN 183 (514)
T ss_pred HHHH
Confidence 6554
No 7
>PLN02971 tryptophan N-hydroxylase
Probab=99.93 E-value=2.7e-24 Score=178.91 Aligned_cols=162 Identities=22% Similarity=0.380 Sum_probs=125.3
Q ss_pred HHhCCCCCCCCCCCCCCCccccccccCCCC-hhHHHHHHHHhhC-CcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCC
Q 028387 46 TRRSSNHLNLPPSPPKLPILGNLHQLLGTL-PHRSLKALSERYG-PLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNR 123 (210)
Q Consensus 46 ~~~~~~~~~~~pgp~~~p~lG~~~~~~~~~-~~~~~~~~~~~yG-~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~ 123 (210)
..+..++.+.||||+++|++||++++..+. .+.++.+|.++|| +++++++|++++|+++||+++++++.+++..|.+|
T Consensus 49 ~~~~~r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~r 128 (543)
T PLN02971 49 SSRNKKLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASR 128 (543)
T ss_pred hcccCCCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCC
Confidence 333344567899999999999998874333 4678999999999 89999999999999999999999999988889888
Q ss_pred CCChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhc
Q 028387 124 PKTTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLS 203 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~ 203 (210)
+.......++.+..+++++.+|+.||++||+++.+.++....+.+.+.+.++++.+++.+.+..+.++++|+.+.+..++
T Consensus 129 p~~~~~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t 208 (543)
T PLN02971 129 PLTYAQKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYC 208 (543)
T ss_pred CcccchhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHH
Confidence 75443333332223457777799999999999545677767777888899999999988876544455688877777666
Q ss_pred cccc
Q 028387 204 SGKV 207 (210)
Q Consensus 204 ~~t~ 207 (210)
.+++
T Consensus 209 ~~vi 212 (543)
T PLN02971 209 GNAI 212 (543)
T ss_pred HHHH
Confidence 5543
No 8
>PLN00168 Cytochrome P450; Provisional
Probab=99.92 E-value=3.1e-24 Score=177.85 Aligned_cols=153 Identities=24% Similarity=0.381 Sum_probs=120.4
Q ss_pred CCCCCCCCCCCCCccccccccC--CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChh
Q 028387 51 NHLNLPPSPPKLPILGNLHQLL--GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTP 128 (210)
Q Consensus 51 ~~~~~~pgp~~~p~lG~~~~~~--~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~ 128 (210)
+..+.||||+++|++||+..+. ..+++..+.+|+++||++|++++|+.|.++++||+++++++.+++..|.+++....
T Consensus 32 ~~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~~ 111 (519)
T PLN00168 32 KGRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVAS 111 (519)
T ss_pred CCCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcccc
Confidence 3456788999999999998652 23577899999999999999999999999999999999999988888887776433
Q ss_pred HHHhhhcCcceee-cCCChhHHHHhH-HHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccc
Q 028387 129 ANILIYECQDISF-SDYGEYWRQVRK-ICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSG 205 (210)
Q Consensus 129 ~~~~~~~~~~~~~-~~~g~~wk~~Rk-~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~ 205 (210)
...++. +.+++. ..+|+.|+++|| ++ +++|+.++++.+.+.+.++++.+++.|.+..+.+..+|+.+.+..++..
T Consensus 112 ~~~~~~-~~~~~~~~~~G~~Wk~~Rr~~~-~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~ 188 (519)
T PLN00168 112 SRLLGE-SDNTITRSSYGPVWRLLRRNLV-AETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRVVETFQYAMFC 188 (519)
T ss_pred hhhhcc-CCCceeCCCCCHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 333321 223333 356999999987 56 8999999999999999999999999998765444456666666555443
No 9
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.92 E-value=7.3e-24 Score=175.10 Aligned_cols=158 Identities=27% Similarity=0.489 Sum_probs=127.3
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChh
Q 028387 49 SSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTP 128 (210)
Q Consensus 49 ~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~ 128 (210)
..++.+.||||++.|++|++..+.....+..+.+|+++||+++++++|+++.|+++||+++++++.+++..|.+++....
T Consensus 25 ~~~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~ 104 (503)
T PLN02394 25 RGKKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVV 104 (503)
T ss_pred hcCcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcch
Confidence 44667889999999999999887434467899999999999999999999999999999999999888777877765444
Q ss_pred HHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCC-CCCccchhhhhhhcccc
Q 028387 129 ANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLH-KGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~~~~~~~~~~t 206 (210)
...+...+.+++++.+|+.|+++||.+..+.|+.++++.+.+.++++++++++.|.+..+. ++.+++.+.+..++.++
T Consensus 105 ~~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dv 183 (503)
T PLN02394 105 FDIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNI 183 (503)
T ss_pred HhHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHH
Confidence 4444333445677777999999999993489999999999999999999999999875432 33567777776666544
No 10
>PLN02966 cytochrome P450 83A1
Probab=99.92 E-value=3.9e-24 Score=176.58 Aligned_cols=161 Identities=30% Similarity=0.580 Sum_probs=128.8
Q ss_pred HhCCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCC
Q 028387 47 RRSSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKT 126 (210)
Q Consensus 47 ~~~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~ 126 (210)
+..++..+.||||+++|++||+..+...+++..+.+|+++||+++++++++.+.++++||+++++++.+++..|.+++..
T Consensus 22 ~~~~~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~ 101 (502)
T PLN02966 22 KPKTKRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPH 101 (502)
T ss_pred ccccCCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCC
Confidence 33445567799999999999999874457889999999999999999999999999999999999999877777666543
Q ss_pred hhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 127 TPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
........+..++.+..+|+.|+++||++.+++|+.++++.+.+.+.++++++++.|++..++++.+|+.+.+..++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~t~dv 181 (502)
T PLN02966 102 RGHEFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAADKSEVVDISELMLTFTNSV 181 (502)
T ss_pred ccceeeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeHHHHHHHHHHHH
Confidence 22222222223344556699999999993279999999999999999999999999987655566789988888887665
Q ss_pred c
Q 028387 207 V 207 (210)
Q Consensus 207 ~ 207 (210)
+
T Consensus 182 i 182 (502)
T PLN02966 182 V 182 (502)
T ss_pred H
Confidence 4
No 11
>PLN02183 ferulate 5-hydroxylase
Probab=99.92 E-value=8.9e-24 Score=174.99 Aligned_cols=155 Identities=34% Similarity=0.640 Sum_probs=121.9
Q ss_pred hCCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCCh
Q 028387 48 RSSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTT 127 (210)
Q Consensus 48 ~~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~ 127 (210)
+.+++.+.||||+++|++|++..+ ....+.++.+|+++||++|++++++.++++++||+++++++.+++..|.+++...
T Consensus 30 ~~~~~~~~ppgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~ 108 (516)
T PLN02183 30 RLRRRLPYPPGPKGLPIIGNMLMM-DQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANI 108 (516)
T ss_pred hccCCCCCCcCCCCCCeeccHHhc-CCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCccc
Confidence 344556789999999999999877 4556788999999999999999999999999999999999998887787776533
Q ss_pred hHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 128 PANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 128 ~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
........+.+++++.+|+.|+++||++.+++|+.++++.+.+. .++++.+++.|.+. .++.+|+.+.+..++.+.
T Consensus 109 ~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~-~~~~~~~~~~l~~~--~~~~v~~~~~~~~~~~~v 184 (516)
T PLN02183 109 AISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASV-RDEVDSMVRSVSSN--IGKPVNIGELIFTLTRNI 184 (516)
T ss_pred chhccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHhc--CCCcEeHHHHHHHHHHHH
Confidence 32323222245567777999999999943799999999988885 56889999999652 245678877777666544
No 12
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=2.1e-23 Score=168.10 Aligned_cols=164 Identities=21% Similarity=0.232 Sum_probs=129.4
Q ss_pred HHHHHhCCCCCCCCCCCCCCCccccccccCCC-ChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCC
Q 028387 43 LKITRRSSNHLNLPPSPPKLPILGNLHQLLGT-LPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVIS 121 (210)
Q Consensus 43 ~~~~~~~~~~~~~~pgp~~~p~lG~~~~~~~~-~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~ 121 (210)
++++...++..+.+|+|+++|++||+..+... .+.....+...++||++.++.+.+|.++|.|||++++|+.+...+|.
T Consensus 20 ~~~~~~~yw~rrGi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~ 99 (499)
T KOG0158|consen 20 WLRWTYSYWRRRGIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDNFY 99 (499)
T ss_pred HHHhhhhhhccCCCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCccCc
Confidence 44555557777899999999999999987432 23444444444449999999999999999999999999999999998
Q ss_pred C--CCCChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhh
Q 028387 122 N--RPKTTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQ 199 (210)
Q Consensus 122 ~--~~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~ 199 (210)
+ ++....... ..+...+++.+|++||+.|..+ +|.|++.+++.|.|.+++.++++++.++++...+..++..+..
T Consensus 100 ~r~~~~~~d~~~--~l~~~~Lf~~~g~~WK~lR~~l-sP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~~~~~~~dl~ 176 (499)
T KOG0158|consen 100 NRKRPIYGDPED--PLSALNLFFLRGERWKRLRTKL-SPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGGQEGEIKDLC 176 (499)
T ss_pred CCCCCCcCCCCC--cccccCchhccCchHHHHHHhh-ccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCccHHHHH
Confidence 8 433221111 2244556666799999999999 8999999999999999999999999999876544567788888
Q ss_pred hhhccccccc
Q 028387 200 TSLSSGKVES 209 (210)
Q Consensus 200 ~~~~~~t~~~ 209 (210)
..+|.|.|.+
T Consensus 177 ~~yT~DVI~~ 186 (499)
T KOG0158|consen 177 ARYTTDVIGS 186 (499)
T ss_pred HHHHHHHHhH
Confidence 8898887754
No 13
>PLN02290 cytokinin trans-hydroxylase
Probab=99.91 E-value=9.7e-24 Score=174.86 Aligned_cols=161 Identities=13% Similarity=0.214 Sum_probs=123.1
Q ss_pred HHHHhCCCCCCCCCCCCCCCccccccccCC------------------CChhHHHHHHHHhhCCcEEEEecCccEEEEcC
Q 028387 44 KITRRSSNHLNLPPSPPKLPILGNLHQLLG------------------TLPHRSLKALSERYGPLMFVYFGNSPTLVVSS 105 (210)
Q Consensus 44 ~~~~~~~~~~~~~pgp~~~p~lG~~~~~~~------------------~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~d 105 (210)
.++.+..+..+.||||+++|++||++++.. .+....+.+|+++|||++++++|+.+.++++|
T Consensus 32 ~~~~~~~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~d 111 (516)
T PLN02290 32 PRRIKKIMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTE 111 (516)
T ss_pred HHHHHHHHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECC
Confidence 344445567778999999999999987621 12334678999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHh
Q 028387 106 AELAGEMFKTHDIVISNRPKTTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRL 185 (210)
Q Consensus 106 p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~ 185 (210)
|+++++++.++. .+.+++...........|.+++++ +|+.||++||++ +++|+.++++.+.+.+.++++++++.|.+
T Consensus 112 p~~v~~il~~~~-~~~~r~~~~~~~~~~~~g~~l~~~-~g~~Wk~~Rk~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~ 188 (516)
T PLN02290 112 TELIKELLTKYN-TVTGKSWLQQQGTKHFIGRGLLMA-NGADWYHQRHIA-APAFMGDRLKGYAGHMVECTKQMLQSLQK 188 (516)
T ss_pred HHHHHHHHhcCC-CCCCCcchhhhHHHHHhcCCcccc-CchHHHHHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998874 344554321111111225666554 599999999999 79999999999999999999999999987
Q ss_pred hcCCC-CCccchhhhhhhccccc
Q 028387 186 SCLHK-GDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 186 ~~~~~-~~v~~~~~~~~~~~~t~ 207 (210)
..+++ .++|+.+.+..++.+++
T Consensus 189 ~~~~~~~~vd~~~~~~~~~~~vi 211 (516)
T PLN02290 189 AVESGQTEVEIGEYMTRLTADII 211 (516)
T ss_pred HHhcCCceEEhHHHHHHHHHHHH
Confidence 64433 46788888777776554
No 14
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.90 E-value=7.2e-23 Score=167.51 Aligned_cols=148 Identities=18% Similarity=0.243 Sum_probs=115.3
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChh
Q 028387 49 SSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTP 128 (210)
Q Consensus 49 ~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~ 128 (210)
..++.+.||||+++|++||+.++...+++.++.+++++||+++++++++++.++++||+++++++.++...|... ....
T Consensus 30 ~~~~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~-~~~~ 108 (463)
T PLN02196 30 SSTKLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFKPT-FPAS 108 (463)
T ss_pred CCCCCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCccccc-CchH
Confidence 344567788888999999988764678899999999999999999999999999999999999998877666322 1111
Q ss_pred HHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccc
Q 028387 129 ANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSG 205 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~ 205 (210)
... ..|.+.++..+|+.|+++||++ ++.|+.++++.+.+.++++++++++.|. ++.+++.+.+..++.+
T Consensus 109 ~~~--~~g~~~l~~~~g~~w~~~Rk~l-~~~f~~~~l~~~~~~i~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~ 177 (463)
T PLN02196 109 KER--MLGKQAIFFHQGDYHAKLRKLV-LRAFMPDAIRNMVPDIESIAQESLNSWE-----GTQINTYQEMKTYTFN 177 (463)
T ss_pred HHH--HcCcccccccCcHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHcCC-----CCeEEeHHHHHHHHHH
Confidence 111 1244344555699999999999 7999999999999999999999998873 2245666655555544
No 15
>PLN02655 ent-kaurene oxidase
Probab=99.89 E-value=2.5e-22 Score=164.53 Aligned_cols=152 Identities=26% Similarity=0.420 Sum_probs=121.2
Q ss_pred CCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhhc
Q 028387 56 PPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIYE 135 (210)
Q Consensus 56 ~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 135 (210)
||||+++|++||++++...+++..+++|+++||++|++++++.++++++||+++++++.++...|.+++.......+...
T Consensus 1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~ 80 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRD 80 (466)
T ss_pred CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcC
Confidence 68999999999999885566899999999999999999999999999999999999999988888777643333323321
Q ss_pred CcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcC--CCCCccchhhhhhhccccc
Q 028387 136 CQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCL--HKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 136 ~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~t~ 207 (210)
+..+.++++|+.|+++||.+.++.|+...++.+.+.+.+.++.+++.+.+..+ .++.+|+.+.+..++.+.+
T Consensus 81 ~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi 154 (466)
T PLN02655 81 KSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLS 154 (466)
T ss_pred CCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHH
Confidence 22344445699999999877567888888889999999999999999876543 3456888887777775543
No 16
>PLN02500 cytochrome P450 90B1
Probab=99.89 E-value=2.4e-22 Score=165.61 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=112.9
Q ss_pred CCCCCCCCCCCCCCCccccccccC----CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCC
Q 028387 49 SSNHLNLPPSPPKLPILGNLHQLL----GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRP 124 (210)
Q Consensus 49 ~~~~~~~~pgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~ 124 (210)
..++.+.||||+++|++||+..+. ...+++++.++.++||+++++++|++++|+++||+++++++.+++..|.++.
T Consensus 33 ~~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~ 112 (490)
T PLN02500 33 KQKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSY 112 (490)
T ss_pred ccCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeC
Confidence 345567799999999999976431 2356788999999999999999999999999999999999998877675443
Q ss_pred CChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhh-hHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhc
Q 028387 125 KTTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQS-FQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLS 203 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~ 203 (210)
.......++ +.++++. +|+.||++||++ ++.|+..+++. +.+.+.+.+..+++.|.+ ++.+|+.+....++
T Consensus 113 ~~~~~~~~g--~~~~~~~-~g~~wr~~Rk~~-~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~vd~~~~~~~~~ 184 (490)
T PLN02500 113 PRSIGGILG--KWSMLVL-VGDMHRDMRSIS-LNFLSHARLRTHLLKEVERHTLLVLDSWKE----NSTFSAQDEAKKFT 184 (490)
T ss_pred chHHHHHhC--ccccccc-CCHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHhCC----CCCEEehHHHHHHH
Confidence 222222221 2345544 699999999999 69999999987 567888888888887742 33567777666666
Q ss_pred ccc
Q 028387 204 SGK 206 (210)
Q Consensus 204 ~~t 206 (210)
.++
T Consensus 185 ~~v 187 (490)
T PLN02500 185 FNL 187 (490)
T ss_pred HHH
Confidence 544
No 17
>PLN02774 brassinosteroid-6-oxidase
Probab=99.87 E-value=9.1e-22 Score=161.06 Aligned_cols=145 Identities=16% Similarity=0.148 Sum_probs=111.3
Q ss_pred CCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhH
Q 028387 50 SNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPA 129 (210)
Q Consensus 50 ~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~ 129 (210)
+.+.+.||||+++|++||+..+ .+++..++++++++||++++++++++++++++||+++++++.++...|.++......
T Consensus 27 ~~r~~~ppgp~~~P~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~ 105 (463)
T PLN02774 27 YSKKGLPPGTMGWPLFGETTEF-LKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSML 105 (463)
T ss_pred cCCCCCCCCCCCCCchhhHHHH-HHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHH
Confidence 3445678899999999999887 566778999999999999999999999999999999999998877666433222222
Q ss_pred HHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhh-hHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhc
Q 028387 130 NILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQS-FQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLS 203 (210)
Q Consensus 130 ~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~ 203 (210)
..+ |.+.+++.+|+.|+++|+++ .++|+...++. +.+.+.+.+++++++|.+ ++.+|+.+....++
T Consensus 106 ~~l---g~~~~~~~~g~~w~~~R~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~ 172 (463)
T PLN02774 106 DIL---GTCNIAAVHGSTHRYMRGSL-LSLISPTMIRDHLLPKIDEFMRSHLSGWDG----LKTIDIQEKTKEMA 172 (463)
T ss_pred HHh---CccchhhcCCHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHhhCC----CCCEEeeHHHHHHH
Confidence 222 34344455699999999999 79999999986 789999999998888742 23466655444443
No 18
>PLN03018 homomethionine N-hydroxylase
Probab=99.87 E-value=1.3e-20 Score=156.43 Aligned_cols=153 Identities=23% Similarity=0.376 Sum_probs=114.4
Q ss_pred CCCCCCCCCCccccccccCCCChh-HHHHHHHHhh-CCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHH
Q 028387 54 NLPPSPPKLPILGNLHQLLGTLPH-RSLKALSERY-GPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANI 131 (210)
Q Consensus 54 ~~~pgp~~~p~lG~~~~~~~~~~~-~~~~~~~~~y-G~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~ 131 (210)
+.||||+++|++||++++...++. .++.++.++| |+++++++|++++|+++|||++++++++++..|.+|+.......
T Consensus 40 ~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~~~ 119 (534)
T PLN03018 40 QLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIMET 119 (534)
T ss_pred CCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhhhh
Confidence 468999999999999987333332 3455666665 79999999999999999999999999988888988875444443
Q ss_pred hhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhH-HHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccccc
Q 028387 132 LIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQ-HVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 132 ~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t~ 207 (210)
+...+.+++++.+|+.||++||++ ++.|...+...+. +...++++++++.+++..+.+..+|+.+.+..++.+++
T Consensus 120 l~~~~~~i~~~~~G~~Wk~~Rk~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi 195 (534)
T PLN03018 120 IGDNYKSMGTSPYGEQFMKMKKVI-TTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVT 195 (534)
T ss_pred hccCCCceEecCCCHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHH
Confidence 432233577776799999999999 6876555544454 45556789999999875444456888877777765554
No 19
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.85 E-value=1.1e-20 Score=155.55 Aligned_cols=152 Identities=25% Similarity=0.447 Sum_probs=124.0
Q ss_pred CCCCCCCCCCCCccccccccCCC--ChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhH
Q 028387 52 HLNLPPSPPKLPILGNLHQLLGT--LPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPA 129 (210)
Q Consensus 52 ~~~~~pgp~~~p~lG~~~~~~~~--~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~ 129 (210)
..+.+|||+++|++|++..+... +...++.++..+||++++.|+|+.+.++++||+.+++|+.++...+.+.+... .
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~-~ 111 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYP-E 111 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHH-H
Confidence 66679999999999999988433 56788999999999999999999999999999999999976665554443322 1
Q ss_pred HHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccccc
Q 028387 130 NILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 130 ~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t~ 207 (210)
......|+|++++. |+.|+++||++ .++|+.+.++++.+.+.+.+..+.+.+.....+. .+|+.+.+..+|.+++
T Consensus 112 ~~~~~lG~gll~~~-g~~W~~~Rk~~-~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~vd~~~~~~~~tld~i 186 (497)
T KOG0157|consen 112 SLKPWLGDGLLFSD-GEKWHKHRKLL-TPAFHFEILKSFVPVFIESSLILLLLLELAASGE-EVDLQDLLKRLTLDII 186 (497)
T ss_pred HHHHHhcCccccCC-chHHHHHHhhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-eEcHHHHHHHHHHHHH
Confidence 11123377887777 99999999999 7999999999999999999999998888744333 3999999988887765
No 20
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.85 E-value=6.9e-20 Score=151.05 Aligned_cols=149 Identities=15% Similarity=0.261 Sum_probs=114.0
Q ss_pred CCCCCCCCCCCCCCCccccccccC----CCChhHHHHHHHHhhCC--cEEEEecCccEEEEcCHHHHHHHHhhCCCCCCC
Q 028387 49 SSNHLNLPPSPPKLPILGNLHQLL----GTLPHRSLKALSERYGP--LMFVYFGNSPTLVVSSAELAGEMFKTHDIVISN 122 (210)
Q Consensus 49 ~~~~~~~~pgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~yG~--i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~ 122 (210)
.....+.||||+++|++|+++.+. ..+++.++.+++++||+ ++++++++.+.++++||+++++++.++ ..|.+
T Consensus 37 ~~~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~ 115 (490)
T PLN02302 37 GEGQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEP 115 (490)
T ss_pred ccCCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-Ccccc
Confidence 445567899999999999988752 34688899999999997 789999999999999999999999866 34544
Q ss_pred CCCChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcC-hhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhh
Q 028387 123 RPKTTPANILIYECQDISFSDYGEYWRQVRKICILQLLS-VRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTS 201 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~-~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~ 201 (210)
+........ .|.+.+...+|+.|+++||.+ ++.|+ .++++.+.+.+.++++++++.|.+ ++.+++.+.+..
T Consensus 116 ~~~~~~~~~---~g~~~~~~~~g~~w~~~R~~~-~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~----~~~v~~~~~~~~ 187 (490)
T PLN02302 116 GWPESTVEL---IGRKSFVGITGEEHKRLRRLT-AAPVNGPEALSTYIPYIEENVKSCLEKWSK----MGEIEFLTELRK 187 (490)
T ss_pred CCchhHHHH---hccccccccCcHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHHHHHHHhcC----CCCEehHHHHHH
Confidence 432222221 244444555699999999999 79884 788999999999999999998853 224677666665
Q ss_pred hcccc
Q 028387 202 LSSGK 206 (210)
Q Consensus 202 ~~~~t 206 (210)
++.++
T Consensus 188 ~~~~v 192 (490)
T PLN02302 188 LTFKI 192 (490)
T ss_pred HHHHH
Confidence 55443
No 21
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.83 E-value=7.3e-20 Score=151.01 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=114.8
Q ss_pred CCCCCCCCCCCCCccccccccCCC--ChhHHHHHHHHhhCCcEE---EEecCccEEEEcCHHHHHHHHhhCCCCCCCCCC
Q 028387 51 NHLNLPPSPPKLPILGNLHQLLGT--LPHRSLKALSERYGPLMF---VYFGNSPTLVVSSAELAGEMFKTHDIVISNRPK 125 (210)
Q Consensus 51 ~~~~~~pgp~~~p~lG~~~~~~~~--~~~~~~~~~~~~yG~i~~---~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~ 125 (210)
++.+..|||+++|++||+..+..+ ...+++.+...+||..++ .|+|+.|.++++||+++++|+.++...|.+++.
T Consensus 28 ~~~~~~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~ 107 (500)
T PLN02169 28 KKPHGQPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPE 107 (500)
T ss_pred hccCCCCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHH
Confidence 445578999999999998766322 234555555556887665 678999999999999999999988777766542
Q ss_pred ChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhh--HHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhc
Q 028387 126 TTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSF--QHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLS 203 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~--~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~ 203 (210)
.. ......|+|+++++ |+.||++||++ +|+|+.++++.+ .+.+.++++.+++.+++.++.+..+|+.+.+..++
T Consensus 108 ~~--~~~~~~g~gl~~~~-g~~Wr~~Rk~l-~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t 183 (500)
T PLN02169 108 FK--KIFDVLGEGILTVD-FELWEDLRKSN-HALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFM 183 (500)
T ss_pred HH--HHHHhhcCcccccC-cHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHH
Confidence 11 11222367776665 99999999999 799999987643 36777888999999987655556789988888887
Q ss_pred cccc
Q 028387 204 SGKV 207 (210)
Q Consensus 204 ~~t~ 207 (210)
.+++
T Consensus 184 ~dvi 187 (500)
T PLN02169 184 FDTS 187 (500)
T ss_pred HHHH
Confidence 7665
No 22
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.82 E-value=1.1e-20 Score=153.45 Aligned_cols=149 Identities=30% Similarity=0.537 Sum_probs=121.3
Q ss_pred CCCCCCCCccccccccC-CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHH--h
Q 028387 56 PPSPPKLPILGNLHQLL-GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANI--L 132 (210)
Q Consensus 56 ~pgp~~~p~lG~~~~~~-~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~--~ 132 (210)
||||+++|++||+..+. .+++++.+.+++++|||+|+++++++++++++||+++++++.++...+..++....... .
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG 80 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence 78999999999999984 26788999999999999999999999999999999999999988766665533222222 1
Q ss_pred hhcCcceeecCCChhHHHHhHHHHHhhcChh-HHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccccc
Q 028387 133 IYECQDISFSDYGEYWRQVRKICILQLLSVR-RVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 133 ~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~-~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t~ 207 (210)
...+.++++.. |+.|+.+|+.+ .+.|+.. .+ .+.+.+.+.++++++.|.+..+.++.+|+.+.+..++.+++
T Consensus 81 ~~~~~~l~~~~-~~~~~~~R~~~-~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i 153 (463)
T PF00067_consen 81 PFGGKGLFFSD-GERWRRQRRLL-APAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVI 153 (463)
T ss_dssp HHTTTSSTTSS-HHHHHHHHHHH-HHHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHH
T ss_pred ccccccccccc-ccccccccccc-cccccccccc-ccccccccccccccccccccccccceeeeeccccccccccc
Confidence 23355665554 89999999999 7999988 66 89999999999999999998766657888777777665543
No 23
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.82 E-value=2.3e-19 Score=148.83 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=110.3
Q ss_pred CCCCCCCCCccccccccCCCChhHHHHHHHHhh---CCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHH
Q 028387 55 LPPSPPKLPILGNLHQLLGTLPHRSLKALSERY---GPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANI 131 (210)
Q Consensus 55 ~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~y---G~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~ 131 (210)
.+|||+++|++||+..+.. .+..+.+|.++| |+++++++++.+.++++||+++++|+.++...|.+++. ....
T Consensus 31 ~~pgp~~~p~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~--~~~~ 106 (516)
T PLN03195 31 NRKGPKSWPIIGAALEQLK--NYDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEV--YHSY 106 (516)
T ss_pred ccCCCCCCCeecchHHHHh--ccchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHh--HHHH
Confidence 4789999999999876522 234566777777 89999999999999999999999999876555654422 1111
Q ss_pred hh-hcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHH-HHHHHHHHHHHHhhcCCCCCccchhhhhhhccccc
Q 028387 132 LI-YECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVR-NDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 132 ~~-~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t~ 207 (210)
.. ..|.++ ++.+|+.|+++||++ +++|+.++++.+.+.+ .+.++.+++.+++....++.+|+.+.+..++.+++
T Consensus 107 ~~~~~g~~l-~~~~g~~w~~~Rr~l-~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi 182 (516)
T PLN03195 107 MEVLLGDGI-FNVDGELWRKQRKTA-SFEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSI 182 (516)
T ss_pred HHHHhcCee-eccCcHHHHHHHHhc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHH
Confidence 11 125565 455699999999999 7999999999999976 66677888888764444556888888877776554
No 24
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.82 E-value=1.3e-19 Score=148.07 Aligned_cols=149 Identities=13% Similarity=0.169 Sum_probs=111.2
Q ss_pred CCCCCCCCCCCCCCccccccccC----CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCC
Q 028387 50 SNHLNLPPSPPKLPILGNLHQLL----GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPK 125 (210)
Q Consensus 50 ~~~~~~~pgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~ 125 (210)
.++.+.||||.++|++||++.+. ..+++.++.+|.++||++|++++++++.++++||+++++++++++..|..+..
T Consensus 3 ~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~ 82 (452)
T PLN03141 3 KKKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYP 82 (452)
T ss_pred CCCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCc
Confidence 35666788999999999998763 24688999999999999999999999999999999999999988877765532
Q ss_pred ChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhh-HHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcc
Q 028387 126 TTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSF-QHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSS 204 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~-~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~ 204 (210)
. ....+. |.+.++..+|+.||++|+++ ++.|+..+++.+ .+.+.+.++++++.|. +++.+++.+....++.
T Consensus 83 ~-~~~~l~--g~~~~~~~~g~~wr~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 154 (452)
T PLN03141 83 K-SLTELM--GKSSILLINGSLQRRVHGLI-GAFLKSPHLKAQITRDMERYVSESLDSWR----DDPPVLVQDETKKIAF 154 (452)
T ss_pred h-hHHHHh--CcccccccCcHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHHHHHHHhcc----CCCCEEhHHHHHHHHH
Confidence 2 222222 43334555699999999999 799988877664 4566666666666553 2345677666666554
Q ss_pred cc
Q 028387 205 GK 206 (210)
Q Consensus 205 ~t 206 (210)
++
T Consensus 155 ~v 156 (452)
T PLN03141 155 EV 156 (452)
T ss_pred HH
Confidence 44
No 25
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.81 E-value=5.8e-19 Score=144.63 Aligned_cols=146 Identities=13% Similarity=0.214 Sum_probs=100.9
Q ss_pred hCCCCCCCCCCCCCCCccccccccC----CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCC
Q 028387 48 RSSNHLNLPPSPPKLPILGNLHQLL----GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNR 123 (210)
Q Consensus 48 ~~~~~~~~~pgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~ 123 (210)
....+.+.||||.++|++||++++. ..++..++.++.++||+++++++++++.++++||+++++++.++...|.++
T Consensus 24 ~~~~~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~ 103 (472)
T PLN02987 24 TRYRRMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECS 103 (472)
T ss_pred hccCCCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEec
Confidence 3345556789999999999998762 246888899999999999999999999999999999999999887777554
Q ss_pred CCChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHH-HHHHHHHHHHHHHHhhcCCCCCccchhhhhhh
Q 028387 124 PKTTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQH-VRNDEVSSLITKIRLSCLHKGDFKTRNCQTSL 202 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~ 202 (210)
........++ +.+++++ +|+.|+++||++ .+.++.+.++.+.. .+.+.++..++.|. +.+++.+.+..+
T Consensus 104 ~~~~~~~~lg--~~~l~~~-~g~~wr~~R~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~ 173 (472)
T PLN02987 104 YPGSISNLLG--KHSLLLM-KGNLHKKMHSLT-MSFANSSIIKDHLLLDIDRLIRFNLDSWS------SRVLLMEEAKKI 173 (472)
T ss_pred CcHHHHHHhC--ccccccc-CcHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHhhc------cceehHHHHHHH
Confidence 3222222221 3456555 599999999998 66555555555432 23344444444442 235554444444
Q ss_pred c
Q 028387 203 S 203 (210)
Q Consensus 203 ~ 203 (210)
+
T Consensus 174 t 174 (472)
T PLN02987 174 T 174 (472)
T ss_pred H
Confidence 4
No 26
>PLN02738 carotene beta-ring hydroxylase
Probab=99.78 E-value=1.9e-18 Score=145.51 Aligned_cols=138 Identities=17% Similarity=0.243 Sum_probs=111.7
Q ss_pred ccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhhcCcceeecCCC
Q 028387 66 GNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIYECQDISFSDYG 145 (210)
Q Consensus 66 G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 145 (210)
||+..+..+..+..+.+++++||||+++++|+.++++++||+.+++|+.+++..|.+++....... ..+.+++ +.+|
T Consensus 143 G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~--~~g~~l~-~~dg 219 (633)
T PLN02738 143 GSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEF--VMGKGLI-PADG 219 (633)
T ss_pred CcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhh--ccCCcee-cCCc
Confidence 454555456678899999999999999999999999999999999999887766765533211111 2255655 4569
Q ss_pred hhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccccc
Q 028387 146 EYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 146 ~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t~ 207 (210)
+.|+++|+.+ +++|+.++++.+.+.+.+++++++++|++..+.++.+|+.+.+..++.+++
T Consensus 220 e~wr~rRr~l-~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI 280 (633)
T PLN02738 220 EIWRVRRRAI-VPALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDII 280 (633)
T ss_pred HHHHHHHHhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHH
Confidence 9999999999 799999999999999999999999999887666678899888888887665
No 27
>PLN02936 epsilon-ring hydroxylase
Probab=99.78 E-value=2e-18 Score=142.27 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=118.6
Q ss_pred CCCCCCCCCccccccccC----CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHH
Q 028387 55 LPPSPPKLPILGNLHQLL----GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPAN 130 (210)
Q Consensus 55 ~~pgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~ 130 (210)
.-.|-.++|++|+.++.. ....+..+.+|+++|||++++++|+.+.++++|||++++++++.+..|.+++......
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~ 92 (489)
T PLN02936 13 LWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSE 92 (489)
T ss_pred cCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhH
Confidence 345777999999876652 4677899999999999999999999999999999999999988766776654322212
Q ss_pred HhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHH-HHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccccc
Q 028387 131 ILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQH-VRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 131 ~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t~ 207 (210)
.. .+.++++ .+|+.||++||++ ++.|+.++++++.+ .+.++++++++.|++..+++..+|+.+.+..++.+.+
T Consensus 93 ~~--~~~~i~~-~~g~~wk~~Rk~l-~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi 166 (489)
T PLN02936 93 FL--FGSGFAI-AEGELWTARRRAV-VPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVI 166 (489)
T ss_pred HH--hcCcccc-CCchHHHHHHHhh-cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 22 2556555 4599999999999 79999999988865 7899999999999887655667898888877765543
No 28
>PLN02648 allene oxide synthase
Probab=99.77 E-value=5.1e-19 Score=144.67 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=115.5
Q ss_pred CCCCCCCCCCCCccccccccC----CCChhHHHHHHHHhhCC-cEEEEecCccE-------EEEcCHHHHHHHHhh----
Q 028387 52 HLNLPPSPPKLPILGNLHQLL----GTLPHRSLKALSERYGP-LMFVYFGNSPT-------LVVSSAELAGEMFKT---- 115 (210)
Q Consensus 52 ~~~~~pgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~yG~-i~~~~~~~~~~-------v~i~dp~~~~~il~~---- 115 (210)
+.+.|||+.++|++|++.++. ..++..++.+.++|||+ ||+.+++|.|. ++++|||+++.++.+
T Consensus 15 ~~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~ 94 (480)
T PLN02648 15 PLREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVD 94 (480)
T ss_pred CCCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhcc
Confidence 456689999999999997642 34567999999999999 99999998766 999999999999975
Q ss_pred CCCCCCCCCCChhHHHhhhcCcc---eeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCC
Q 028387 116 HDIVISNRPKTTPANILIYECQD---ISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGD 192 (210)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (210)
+...+.+.... ....+ |.+ .++..+|+.|+++||++ .++|+ ..++.+.+.|.+.++++++.|++....++.
T Consensus 95 ~~~~~~~~~~~-~~~l~---G~~~~~s~~~~~g~~H~r~Rrll-~~~f~-~~~~~~~~~m~~~~~~~~~~w~~~~~~~~~ 168 (480)
T PLN02648 95 KRDVFTGTYMP-STAFT---GGYRVLSYLDPSEPKHAKLKSFL-FELLK-SRHRRFIPEFRAAFAELFDTWEAELAKKGK 168 (480)
T ss_pred ccccceeeecc-Ccccc---CCceeeeecCCCCchHHHHHHHH-HHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhhCCC
Confidence 44334332221 22222 443 55666799999999999 79999 577999999999999999999765334446
Q ss_pred ccchhhhhhhccccc
Q 028387 193 FKTRNCQTSLSSGKV 207 (210)
Q Consensus 193 v~~~~~~~~~~~~t~ 207 (210)
+|+.+.+..++.+.+
T Consensus 169 vdv~~~~~~lt~~vi 183 (480)
T PLN02648 169 AEFNDPLDQMAFNFL 183 (480)
T ss_pred ccccchHHHHHHHHH
Confidence 888888777776553
No 29
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=1.5e-16 Score=127.04 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=117.9
Q ss_pred CCCCCCCCCCCCCCCccccccc---cCCCChhHHHHHHHHhhCCcEEEE-ecCccEEEEcCHHHHHHHHhhCCCCCCCCC
Q 028387 49 SSNHLNLPPSPPKLPILGNLHQ---LLGTLPHRSLKALSERYGPLMFVY-FGNSPTLVVSSAELAGEMFKTHDIVISNRP 124 (210)
Q Consensus 49 ~~~~~~~~pgp~~~p~lG~~~~---~~~~~~~~~~~~~~~~yG~i~~~~-~~~~~~v~i~dp~~~~~il~~~~~~~~~~~ 124 (210)
..++...+|||..+|++|.+.. ....+.++.....+++|||||+.. +|+...|.+.||++++.++++++. ++-|+
T Consensus 45 ~~r~~~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~-~P~Rp 123 (519)
T KOG0159|consen 45 RARPFEEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGK-YPFRP 123 (519)
T ss_pred ccCChhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCC-CCCcc
Confidence 3345556899999999998883 334678899999999999999999 788899999999999999988774 45553
Q ss_pred -CChh---HHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCC---CCCccchh
Q 028387 125 -KTTP---ANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLH---KGDFKTRN 197 (210)
Q Consensus 125 -~~~~---~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~---~~~v~~~~ 197 (210)
..+. ..-......|+ +..+|++|++.|..++.....++.++.|.|.+++.++++++.+++..+. ...-|+..
T Consensus 124 ~~~~~w~~~rd~~~~~~Gl-~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~ 202 (519)
T KOG0159|consen 124 LLIEPWVAYRDFRGGVCGL-FLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQ 202 (519)
T ss_pred cccchhhhhHHhhccCCCc-ccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHH
Confidence 2111 11222333445 5555999999999996557899999999999999999999999998763 22345555
Q ss_pred hhhhhcccc
Q 028387 198 CQTSLSSGK 206 (210)
Q Consensus 198 ~~~~~~~~t 206 (210)
....++..+
T Consensus 203 ~l~~wslEs 211 (519)
T KOG0159|consen 203 ELYRWSLES 211 (519)
T ss_pred HHHHHHHHH
Confidence 555554433
No 30
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.60 E-value=7.1e-14 Score=115.62 Aligned_cols=139 Identities=15% Similarity=0.053 Sum_probs=101.9
Q ss_pred CCccccccccCCCChhHHHHHHHHhhC-CcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHh-hhcCcce
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYG-PLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANIL-IYECQDI 139 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~-~~~~~~~ 139 (210)
.++.|+.... ..+.++++..+.++++ .+++++.++. ++++||+++++++.++...|.+.... .... ...|+|+
T Consensus 49 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~--~~~~~~~~g~gi 123 (502)
T PLN02426 49 AYLTASWAKD-FDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPF--SAILGDLLGRGI 123 (502)
T ss_pred CCccHHHHHh-cccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhH--HHHHHHhcCCce
Confidence 5577887664 3456778877888887 5677766554 89999999999998877677654321 1111 1236676
Q ss_pred eecCCChhHHHHhHHHHHhhcChhHHhhhH--HHHHHHHHHHHHHHHhhcCC--CCCccchhhhhhhccccc
Q 028387 140 SFSDYGEYWRQVRKICILQLLSVRRVQSFQ--HVRNDEVSSLITKIRLSCLH--KGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 140 ~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~--~~~~~~~~~~~~~l~~~~~~--~~~v~~~~~~~~~~~~t~ 207 (210)
+. .+|+.|+++||++ ++.|+.++++.+. +.+.+.++.+++.|++..++ +..+|+.+.+..++.+++
T Consensus 124 ~~-~~g~~wk~~Rk~l-~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi 193 (502)
T PLN02426 124 FN-VDGDSWRFQRKMA-SLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNI 193 (502)
T ss_pred ee-cCcHHHHHHHHHh-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHH
Confidence 55 5599999999999 7999999998875 67778888899988875432 346899888888877664
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=3.9e-12 Score=100.11 Aligned_cols=126 Identities=14% Similarity=0.130 Sum_probs=102.5
Q ss_pred CCCCCCC-CCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHh
Q 028387 54 NLPPSPP-KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANIL 132 (210)
Q Consensus 54 ~~~pgp~-~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~ 132 (210)
+.||--. .+|++|+...+ ++++.+++++.++|||+||++.++|+.+.++.||+....++.++.....-... +..-..
T Consensus 31 ~~PPli~gwiP~lG~a~~f-gk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~-~~~l~~ 108 (486)
T KOG0684|consen 31 KEPPLIKGWIPWLGSALAF-GKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEA-YSKLTT 108 (486)
T ss_pred CCCcccccCcchhhHHHHh-ccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHH-HHHhhh
Confidence 4566544 57999999999 99999999999999999999999999999999999999999766333321111 111112
Q ss_pred hhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHH
Q 028387 133 IYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITK 182 (210)
Q Consensus 133 ~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~ 182 (210)
...|+|++...++....++-+.+ .......+++++.+.|.++..+.++.
T Consensus 109 ~vFg~~v~~d~~~~~~~e~~~~~-k~~L~~~~lk~~~e~m~~el~~~f~~ 157 (486)
T KOG0684|consen 109 PVFGKGVVYDVPNHVMMEQKKFF-KSALGGVALKSLVELMLEELHAYFET 157 (486)
T ss_pred hhcCCCccccCCCchHHHHHHHH-HHHhchhhHHHHHHHHHHHHHHHHhc
Confidence 23478898888889999999999 69999999999999999999998887
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.91 E-value=6.7e-09 Score=84.11 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=88.9
Q ss_pred hhHHHHHHHHhhCCcEEEEecCcc--EEEEcCHHHHHHHHhhCCCCCCCCCCChhHH--HhhhcCcceeecCCChhHHHH
Q 028387 76 PHRSLKALSERYGPLMFVYFGNSP--TLVVSSAELAGEMFKTHDIVISNRPKTTPAN--ILIYECQDISFSDYGEYWRQV 151 (210)
Q Consensus 76 ~~~~~~~~~~~yG~i~~~~~~~~~--~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~wk~~ 151 (210)
+......+.+.||.++.....+.- .+++++++++++++.++. .+++........ .....|.+.+...||+.|+++
T Consensus 24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~ 102 (411)
T COG2124 24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRL 102 (411)
T ss_pred hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhccccceeecCCHHHHHH
Confidence 344556677778888888766554 899999999999998763 111111111111 122225554566679999999
Q ss_pred hHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccccc
Q 028387 152 RKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 152 Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t~ 207 (210)
||++ +++|+++.++++.+.+.+.++++++.+ +. + +..++.+.+..++.+++
T Consensus 103 Rkl~-~~~F~~~~~~~~~~~i~~~~~~~~~~~-~~--~-~~~~v~~~a~~l~~~vi 153 (411)
T COG2124 103 RKLL-APAFTPRALRGYRPLIREIADRLLDDL-WQ--G-GADLVLDFAAELTLRVI 153 (411)
T ss_pred HHHh-ccccCHHHHHHHHHHHHHHHHHHHHhc-cc--C-CchhHHHHhhhhhHHHH
Confidence 9999 799999999999999999999999998 32 2 45566666666665543
No 33
>PTZ00370 STEVOR; Provisional
Probab=75.93 E-value=3.6 Score=31.62 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 028387 34 IPLLTLVQLLKITRRSSN 51 (210)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~ 51 (210)
++++++++|+|+++...|
T Consensus 269 vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 269 VVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHhhcchh
Confidence 333344444555544433
No 34
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=70.04 E-value=27 Score=22.68 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=37.1
Q ss_pred CCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCc------cEEEEcCHHHHHHHHhh
Q 028387 56 PPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNS------PTLVVSSAELAGEMFKT 115 (210)
Q Consensus 56 ~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~------~~v~i~dp~~~~~il~~ 115 (210)
||.-..+-++-|++ .+-..+-+-++.-+||+|.++.+|.. -.||-.|-..++.....
T Consensus 14 ppevnriLyirNLp---~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 14 PPEVNRILYIRNLP---FKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred ChhhheeEEEecCC---ccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence 33333344444443 23445777888999999999998853 36666677777777644
No 35
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=48.78 E-value=41 Score=22.48 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=30.2
Q ss_pred CChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhh
Q 028387 74 TLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 74 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~ 115 (210)
.+....+++|.++||.+--. .+...+...|++.++++..+
T Consensus 74 ~~v~~~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 74 QNVEQSIEDWARRYGRVRLY--KGAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHhC
Confidence 34557889999999986442 14567778999999999855
No 36
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=48.25 E-value=45 Score=18.16 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=24.2
Q ss_pred HHHHHhhCCcEEEEecCc----cEEEEcCHHHHHHHHhh
Q 028387 81 KALSERYGPLMFVYFGNS----PTLVVSSAELAGEMFKT 115 (210)
Q Consensus 81 ~~~~~~yG~i~~~~~~~~----~~v~i~dp~~~~~il~~ 115 (210)
.+...+||+|-.+.+... -.|-..+++.++.+...
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~ 40 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQ 40 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHH
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 466789999988886543 24445788888888754
No 37
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=44.19 E-value=69 Score=19.14 Aligned_cols=33 Identities=6% Similarity=0.022 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 028387 28 TFLLLLIPLLTLVQLLKITRRSSNHLNLPPSPP 60 (210)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~ 60 (210)
++.++.+.+...+.++-..+...++.+.|-|+-
T Consensus 12 LF~~~T~lfYy~~~w~~~~~~~~hrY~eP~G~A 44 (71)
T PF14004_consen 12 LFTGCTLLFYYAILWVSDEYEPYHRYDEPEGSA 44 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCce
Confidence 344444444444444666777888888887753
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=42.25 E-value=1.1e+02 Score=21.04 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=34.6
Q ss_pred ccccccccCCCChhHHHHHHHHhhCCcEEEEec---------CccEEEEcCHHHHHHHHhh
Q 028387 64 ILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 64 ~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~dp~~~~~il~~ 115 (210)
++|++.. .-..+.+.++.++||+|..+.+. +.-.|-..+++.++.++..
T Consensus 38 fVgnL~~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 38 FIGGLSW---GTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred EEeCCCC---CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4454442 34567888888999998776653 2246677899999999965
No 39
>PTZ00370 STEVOR; Provisional
Probab=40.90 E-value=71 Score=24.84 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhCCC
Q 028387 32 LLIPLLTLVQLLKITRRSSN 51 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~ 51 (210)
+++++.++++++|.|.++++
T Consensus 263 vllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 263 VLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33444444444555555443
No 40
>PLN03120 nucleic acid binding protein; Provisional
Probab=38.11 E-value=1.8e+02 Score=22.37 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=36.6
Q ss_pred ChhHHHHHHHHhhCCcEEEEec------CccEEEEcCHHHHHHHHhhCCCCCCCCC
Q 028387 75 LPHRSLKALSERYGPLMFVYFG------NSPTLVVSSAELAGEMFKTHDIVISNRP 124 (210)
Q Consensus 75 ~~~~~~~~~~~~yG~i~~~~~~------~~~~v~i~dp~~~~~il~~~~~~~~~~~ 124 (210)
-..+.++++...||+|..+.+. +.-.|-..|++.++..+.-+...+.++.
T Consensus 16 tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~ 71 (260)
T PLN03120 16 ATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQS 71 (260)
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCce
Confidence 4456788888999999888763 3356667899999988876665555554
No 41
>PF14198 TnpV: Transposon-encoded protein TnpV
Probab=34.62 E-value=1.1e+02 Score=20.00 Aligned_cols=39 Identities=8% Similarity=0.109 Sum_probs=28.4
Q ss_pred HHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhh
Q 028387 148 WRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLS 186 (210)
Q Consensus 148 wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~ 186 (210)
+|.+|+..-........+..+...+++.+.++++.+-+.
T Consensus 34 Lke~~p~~Y~~ll~~g~L~~~l~eid~~A~e~~e~l~~q 72 (111)
T PF14198_consen 34 LKEHKPILYNNLLLSGKLNEHLAEIDEQAQERFERLVEQ 72 (111)
T ss_pred HHHhHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555553455667778888888999999998888765
No 42
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=34.57 E-value=2.2e+02 Score=24.17 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=20.6
Q ss_pred hhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCC
Q 028387 86 RYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVI 120 (210)
Q Consensus 86 ~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~ 120 (210)
+||.|++-.+-++.+-|=.=|+.-++=++++...|
T Consensus 222 rfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy 256 (534)
T KOG3653|consen 222 RFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIY 256 (534)
T ss_pred ccceeehhhccCceeEEEecCHHHHHHHHhHHHHH
Confidence 57888877776665544444444555555554455
No 43
>PHA03049 IMV membrane protein; Provisional
Probab=33.36 E-value=1e+02 Score=18.03 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCcccc
Q 028387 51 NHLNLPPSPPKLPILGN 67 (210)
Q Consensus 51 ~~~~~~pgp~~~p~lG~ 67 (210)
.....+|.|...+..-+
T Consensus 28 ~~q~~~p~~e~ye~~e~ 44 (68)
T PHA03049 28 TTSQNPPSQEKYEKMED 44 (68)
T ss_pred ccCCCCCChhhccCchh
Confidence 34444444443444333
No 44
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=30.23 E-value=1.1e+02 Score=22.07 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=29.3
Q ss_pred ccccccccCCCChhHHHHHHHHhhCCcEEEEec----CccEEEEcCHHHHHHHH
Q 028387 64 ILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG----NSPTLVVSSAELAGEMF 113 (210)
Q Consensus 64 ~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~i~dp~~~~~il 113 (210)
.+|||.. .-...-++....+||++..+|+. +.-.|-+-||..++++.
T Consensus 14 YVGnL~~---~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAv 64 (195)
T KOG0107|consen 14 YVGNLGS---RATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAV 64 (195)
T ss_pred EeccCCC---CcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHH
Confidence 4455543 22334567788899999999963 33466666665555544
No 45
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=27.81 E-value=2.2e+02 Score=22.44 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=37.9
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEecCc---------cEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNS---------PTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~---------~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
-++||+.. .--.+.+.++..+||+|..+.+... -.|...+++.+...+.. ++..+.++
T Consensus 272 lfV~NL~~---~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr 339 (352)
T TIGR01661 272 IFVYNLSP---DTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNR 339 (352)
T ss_pred EEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 35566553 3455778888899999988776422 26777888888777754 44444443
No 46
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=26.91 E-value=1.6e+02 Score=18.13 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=27.7
Q ss_pred HHHHHHHHhhCCc---EEEEecCccEEEEcCH-----HHHHHHHhh
Q 028387 78 RSLKALSERYGPL---MFVYFGNSPTLVVSSA-----ELAGEMFKT 115 (210)
Q Consensus 78 ~~~~~~~~~yG~i---~~~~~~~~~~v~i~dp-----~~~~~il~~ 115 (210)
+.-.+++++|.++ +++..++.+-+-|.+. +.+.++++.
T Consensus 24 EL~kRl~~~fPd~~~~v~Vr~~s~n~lsv~g~~k~dK~~i~eiLqE 69 (81)
T PRK10597 24 ELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKDRISEILQE 69 (81)
T ss_pred HHHHHHHhhCCCCCccEEEeecCCCceEecCCCcchHHHHHHHHHH
Confidence 4456777888876 8999988888887544 666666654
No 47
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=26.78 E-value=1.8e+02 Score=19.40 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=20.0
Q ss_pred CcceeecCCChhHHHH---hHHHHHhhcChhHHhhhHHHHH
Q 028387 136 CQDISFSDYGEYWRQV---RKICILQLLSVRRVQSFQHVRN 173 (210)
Q Consensus 136 ~~~~~~~~~g~~wk~~---Rk~~~~~~f~~~~l~~~~~~~~ 173 (210)
..|++ .|++.|... |... ++.+...........+.
T Consensus 71 ~~glI--~d~e~Wl~m~~~RN~t-sHtYde~~a~~i~~~I~ 108 (124)
T PF08780_consen 71 KAGLI--DDGEIWLDMLEDRNLT-SHTYDEETAEEIYERIP 108 (124)
T ss_dssp HTTSS--SHHHHHHHHHHHHHHG-GGTTSHHHHHHHHHTHH
T ss_pred HcCCC--CCHHHHHHHHHHhccc-cCCCCHHHHHHHHHHHH
Confidence 34555 558999976 4445 56666655444443333
No 48
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=25.95 E-value=78 Score=17.66 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=15.6
Q ss_pred hCCcEEEEecCccEEEEc
Q 028387 87 YGPLMFVYFGNSPTLVVS 104 (210)
Q Consensus 87 yG~i~~~~~~~~~~v~i~ 104 (210)
-|+++++.-||+++.|..
T Consensus 3 ~GDvV~LKSGGp~MTV~~ 20 (53)
T PF09926_consen 3 IGDVVQLKSGGPRMTVTE 20 (53)
T ss_pred CCCEEEEccCCCCeEEEE
Confidence 389999999999999874
No 49
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=25.85 E-value=89 Score=22.22 Aligned_cols=38 Identities=34% Similarity=0.474 Sum_probs=29.8
Q ss_pred CCChhHHHHHHHHhhC-CcEEEEecCc-c---EEEEcCHHHHH
Q 028387 73 GTLPHRSLKALSERYG-PLMFVYFGNS-P---TLVVSSAELAG 110 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG-~i~~~~~~~~-~---~v~i~dp~~~~ 110 (210)
.....+..+++++++| |+..+.++|. | -++++||-.+.
T Consensus 153 GGkIteaVk~lr~~hgI~VISL~M~GSVpdVADlVvtDPvqAG 195 (218)
T COG1707 153 GGKITEAVKELREEHGIPVISLNMFGSVPDVADLVVTDPVQAG 195 (218)
T ss_pred cchHHHHHHHHHHhcCCeEEEeccCCCCcchhheeecCchHhh
Confidence 4677899999999999 8888887664 3 67889996543
No 50
>smart00362 RRM_2 RNA recognition motif.
Probab=25.84 E-value=1.2e+02 Score=16.46 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=28.4
Q ss_pred ChhHHHHHHHHhhCCcEEEEecC-------ccEEEEcCHHHHHHHHhh
Q 028387 75 LPHRSLKALSERYGPLMFVYFGN-------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 75 ~~~~~~~~~~~~yG~i~~~~~~~-------~~~v~i~dp~~~~~il~~ 115 (210)
...+.+.++.++||++..+.+.. .-.+-..+++.++.++..
T Consensus 11 ~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 11 VTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 34567778888999887665432 235556788888888754
No 51
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.45 E-value=1.3e+02 Score=22.31 Aligned_cols=42 Identities=5% Similarity=0.065 Sum_probs=33.7
Q ss_pred CChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhh
Q 028387 144 YGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLS 186 (210)
Q Consensus 144 ~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~ 186 (210)
.+++|+.+|.+- .--.....+.+..+.++++++.+..+|.++
T Consensus 155 f~Krr~~~r~lk-~~~W~~~~~DqVie~vdkc~~aLsa~L~~q 196 (257)
T KOG3027|consen 155 FVKRRKALRELK-VYDWDDKTMDQVIEQVDKCCRALSAQLGSQ 196 (257)
T ss_pred HHHHHHHHHHHh-hcCcccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 478888888887 577787777888888888888888888755
No 52
>smart00360 RRM RNA recognition motif.
Probab=23.84 E-value=1.3e+02 Score=16.18 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhhCCcEEEEecCc---------cEEEEcCHHHHHHHHhh
Q 028387 76 PHRSLKALSERYGPLMFVYFGNS---------PTLVVSSAELAGEMFKT 115 (210)
Q Consensus 76 ~~~~~~~~~~~yG~i~~~~~~~~---------~~v~i~dp~~~~~il~~ 115 (210)
..+.+.++.++||++..+.+... -.+-..+++.++.++..
T Consensus 9 ~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~ 57 (71)
T smart00360 9 TEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA 57 (71)
T ss_pred CHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 34667778889998877765332 24556788888887754
No 53
>PLN02196 abscisic acid 8'-hydroxylase
Probab=23.49 E-value=1.7e+02 Score=24.36 Aligned_cols=9 Identities=0% Similarity=-0.459 Sum_probs=3.4
Q ss_pred hCCCCCCCC
Q 028387 48 RSSNHLNLP 56 (210)
Q Consensus 48 ~~~~~~~~~ 56 (210)
+.....+.|
T Consensus 32 ~~~~~Ppgp 40 (463)
T PLN02196 32 TKLPLPPGT 40 (463)
T ss_pred CCCCCCCCC
Confidence 333433333
No 54
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=23.38 E-value=2.3e+02 Score=19.89 Aligned_cols=22 Identities=9% Similarity=-0.164 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCC
Q 028387 34 IPLLTLVQLLKITRRSSNHLNL 55 (210)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~ 55 (210)
-+++++.|..|.+++.+..++.
T Consensus 73 nAvlLI~WA~YN~~RF~~eRR~ 94 (153)
T PRK14584 73 NAVLLIIWAKYNQVRFQVERRG 94 (153)
T ss_pred HHHHHHHHHHHHHHHhcccccC
Confidence 3334445545666665554433
No 55
>PRK02302 hypothetical protein; Provisional
Probab=23.16 E-value=2e+02 Score=18.06 Aligned_cols=39 Identities=8% Similarity=0.161 Sum_probs=22.9
Q ss_pred HHhhCCcEEEEecCccEEEEcCHHHHHHHHhh-CCCCCCC
Q 028387 84 SERYGPLMFVYFGNSPTLVVSSAELAGEMFKT-HDIVISN 122 (210)
Q Consensus 84 ~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~-~~~~~~~ 122 (210)
.++||+|....--.+=.+.-.|-+.++++... ....|.+
T Consensus 23 LrkfG~I~Y~Skk~kYvvlYvn~~~~e~~~~kl~~l~fVk 62 (89)
T PRK02302 23 LSKYGDIVYHSKRSRYLVLYVNKEDVEQKLEELSKLKFVK 62 (89)
T ss_pred HhhcCcEEEEeccccEEEEEECHHHHHHHHHHHhcCCCee
Confidence 34899998775333334444677777777755 3334443
No 56
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=23.00 E-value=1.7e+02 Score=17.12 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=29.2
Q ss_pred ChhHHHHhHHHHHhhcChhHHhhhHHH---HHHHHHHHHHHHHhhcC
Q 028387 145 GEYWRQVRKICILQLLSVRRVQSFQHV---RNDEVSSLITKIRLSCL 188 (210)
Q Consensus 145 g~~wk~~Rk~~~~~~f~~~~l~~~~~~---~~~~~~~~~~~l~~~~~ 188 (210)
|..|+..=+.+ . |+...|+.+... ..+.+..++..|.+...
T Consensus 10 g~~W~~la~~L-g--l~~~~I~~i~~~~~~~~~~~~~mL~~W~~~~~ 53 (79)
T cd01670 10 GKDWKKLARKL-G--LSDGEIDQIEEDNPRVREQAYQLLLKWEEREG 53 (79)
T ss_pred hhHHHHHHHHh-C--CCHHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence 68898876655 2 677777666533 46889999999987644
No 57
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=22.80 E-value=2.5e+02 Score=18.93 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=27.2
Q ss_pred HHHHHHhhC------CcEEEEecCc-cEEEE-----cCHHHHHHHHhhCCCCCCC
Q 028387 80 LKALSERYG------PLMFVYFGNS-PTLVV-----SSAELAGEMFKTHDIVISN 122 (210)
Q Consensus 80 ~~~~~~~yG------~i~~~~~~~~-~~v~i-----~dp~~~~~il~~~~~~~~~ 122 (210)
-.++.++|| |++.+..++. +-+-. ...++++..+.+++..|-+
T Consensus 70 N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~yig 124 (126)
T PF07912_consen 70 NMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGLYIG 124 (126)
T ss_dssp CHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS--TT
T ss_pred HHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCeeec
Confidence 378888997 7888887554 44444 2347788887777655543
No 58
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=22.79 E-value=1.6e+02 Score=16.81 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=24.0
Q ss_pred ChhHHHHHHHHhhC-CcEEEEecCccEEEE-cCHHHHHHHH
Q 028387 75 LPHRSLKALSERYG-PLMFVYFGNSPTLVV-SSAELAGEMF 113 (210)
Q Consensus 75 ~~~~~~~~~~~~yG-~i~~~~~~~~~~v~i-~dp~~~~~il 113 (210)
.....+.++.++|| +.+++.... .+.+. .+++.+..++
T Consensus 24 ~~l~~la~ia~~yg~~~irlT~~Q-~l~l~~v~~~~~~~i~ 63 (69)
T PF03460_consen 24 EQLRALAEIAEKYGDGEIRLTTRQ-NLQLRGVPEENLPAIF 63 (69)
T ss_dssp HHHHHHHHHHHHHSTSEEEEETTS-CEEEEEEEGGGHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEECCCC-eEEEeCCCHHHHHHHH
Confidence 45678899999999 555554433 33333 4566666555
No 59
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=21.69 E-value=2.1e+02 Score=17.66 Aligned_cols=41 Identities=12% Similarity=0.333 Sum_probs=31.0
Q ss_pred ChhHHHHhHHHHHhhcChhHHhhhHHH-----HHHHHHHHHHHHHhhcC
Q 028387 145 GEYWRQVRKICILQLLSVRRVQSFQHV-----RNDEVSSLITKIRLSCL 188 (210)
Q Consensus 145 g~~wk~~Rk~~~~~~f~~~~l~~~~~~-----~~~~~~~~~~~l~~~~~ 188 (210)
|..||..=+.+ .|+...|..+... +.+.+.+++..|.+..+
T Consensus 13 G~~Wk~lar~L---G~s~~eI~~ie~~~~r~~~~eq~~~mL~~W~~r~g 58 (86)
T cd08777 13 GKKWKRCARKL---GFTESEIEEIDHDYERDGLKEKVHQMLHKWKMKEG 58 (86)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHhcccCCHHHHHHHHHHHHHHccC
Confidence 88999876655 3788888877643 57889999999988643
No 60
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=21.56 E-value=1.1e+02 Score=24.01 Aligned_cols=16 Identities=6% Similarity=0.218 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhCCCC
Q 028387 37 LTLVQLLKITRRSSNH 52 (210)
Q Consensus 37 ~~~~~~~~~~~~~~~~ 52 (210)
+++.+.+|..+|++++
T Consensus 269 VLIMvIIYLILRYRRK 284 (299)
T PF02009_consen 269 VLIMVIIYLILRYRRK 284 (299)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445666665553
No 61
>PF15269 zf-C2H2_7: Zinc-finger
Probab=21.50 E-value=1.5e+02 Score=15.86 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCCcccccccc
Q 028387 51 NHLNLPPSPPKLPILGNLHQL 71 (210)
Q Consensus 51 ~~~~~~pgp~~~p~lG~~~~~ 71 (210)
++...+|.|++-|+--.-++-
T Consensus 6 kkphyiprp~gkp~~ykcfqc 26 (54)
T PF15269_consen 6 KKPHYIPRPPGKPFKYKCFQC 26 (54)
T ss_pred CCCCcCCCCCCCCccceeecC
Confidence 344567888887776555544
No 62
>COG5329 Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
Probab=20.98 E-value=1.1e+02 Score=26.46 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=20.0
Q ss_pred hhHHHHHHHHhhCCcEEEEecCccE
Q 028387 76 PHRSLKALSERYGPLMFVYFGNSPT 100 (210)
Q Consensus 76 ~~~~~~~~~~~yG~i~~~~~~~~~~ 100 (210)
...+|.++.++|||++-+.+.++.-
T Consensus 295 f~kHF~~L~~~YG~v~vvNLl~tK~ 319 (570)
T COG5329 295 FDKHFDKLREKYGDVYVVNLLKTKG 319 (570)
T ss_pred HHHHHHHHHHHcCCEEEEEcccCCc
Confidence 3478999999999999888765543
No 63
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=20.92 E-value=2.2e+02 Score=18.22 Aligned_cols=48 Identities=6% Similarity=0.106 Sum_probs=32.0
Q ss_pred CChhHHHHHHHHhhCCcEEEE--------------ecCccEEEE--cCHHHHHHHHhhCCCCCC
Q 028387 74 TLPHRSLKALSERYGPLMFVY--------------FGNSPTLVV--SSAELAGEMFKTHDIVIS 121 (210)
Q Consensus 74 ~~~~~~~~~~~~~yG~i~~~~--------------~~~~~~v~i--~dp~~~~~il~~~~~~~~ 121 (210)
......+.+..++||.|.... ..+.+.+.+ .+|..+++.+.+++..+.
T Consensus 16 ~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~ 79 (100)
T PF05172_consen 16 PSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFS 79 (100)
T ss_dssp GGGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEET
T ss_pred HHHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEc
Confidence 344567778888999987664 334555555 588888999977775443
No 64
>PRK02886 hypothetical protein; Provisional
Probab=20.85 E-value=2.3e+02 Score=17.74 Aligned_cols=32 Identities=9% Similarity=0.216 Sum_probs=20.4
Q ss_pred HHhhCCcEEEEecCccEEEEcCHHHHHHHHhh
Q 028387 84 SERYGPLMFVYFGNSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 84 ~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~ 115 (210)
.++||+|..+.--..=.++-.|-+.++++...
T Consensus 21 LrkyG~I~Y~Skr~kYvvlYvn~~~~e~~~~k 52 (87)
T PRK02886 21 LRKFGNVHYVSKRLKYAVLYCDMEQVEDIMNK 52 (87)
T ss_pred HhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 34899998775333334444677777777755
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=20.61 E-value=1.7e+02 Score=16.17 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=29.8
Q ss_pred CChhHHHHHHHHhhCCcEEEEecC--------ccEEEEcCHHHHHHHHhh
Q 028387 74 TLPHRSLKALSERYGPLMFVYFGN--------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 74 ~~~~~~~~~~~~~yG~i~~~~~~~--------~~~v~i~dp~~~~~il~~ 115 (210)
.-..+.+.++.++||++..+.+.. .-.|...+++.++.++..
T Consensus 9 ~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~ 58 (70)
T PF00076_consen 9 DVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEE 58 (70)
T ss_dssp TSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHH
Confidence 344577888889999986665433 125666799999988864
Done!