Query 028387
Match_columns 210
No_of_seqs 145 out of 1784
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 17:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nxu_A Cytochrome P450 3A4; al 99.9 1.9E-25 6.6E-30 182.2 8.3 154 48-207 8-162 (485)
2 3swz_A Steroid 17-alpha-hydrox 99.9 5.7E-24 1.9E-28 174.0 12.4 153 51-206 5-160 (494)
3 3pm0_A Cypib1, cytochrome P450 99.9 5E-24 1.7E-28 174.7 11.8 156 49-207 4-165 (507)
4 3s79_A Cytochrome P450 19A1; o 99.9 3.6E-24 1.2E-28 175.4 9.3 154 51-207 42-199 (503)
5 3qz1_A Steroid 21-hydroxylase; 99.9 4.9E-24 1.7E-28 174.3 9.3 151 48-208 23-174 (496)
6 3tbg_A Cytochrome P450 2D6; mo 99.9 3.4E-23 1.2E-27 168.5 12.9 154 49-205 5-162 (479)
7 3k9v_A 1,25-dihydroxyvitamin D 99.9 5.1E-23 1.8E-27 167.6 12.6 157 48-207 18-183 (482)
8 3e6i_A CYPIIE1, P450-J, cytoch 99.9 2.3E-22 8E-27 163.5 13.2 151 50-206 6-158 (476)
9 2hi4_A Cytochrome P450 1A2; CY 99.9 2E-22 6.9E-27 165.0 11.7 155 49-206 11-175 (495)
10 2fdv_A Cytochrome P450 2A6; CY 99.9 1.1E-21 3.7E-26 159.9 13.7 150 53-207 9-160 (476)
11 1po5_A Cytochrome P450 2B4; ox 99.9 1.1E-21 3.7E-26 159.9 12.5 151 52-207 8-160 (476)
12 3czh_A Cytochrome P450 2R1; vi 99.9 1.7E-21 5.8E-26 159.0 11.6 152 51-206 9-164 (481)
13 2ij2_A Cytochrome P450 BM3; mo 99.9 4.4E-21 1.5E-25 156.1 13.0 149 53-206 2-152 (470)
14 3ld6_A Lanosterol 14-alpha dem 99.9 2.8E-22 9.7E-27 162.7 5.9 146 52-204 9-155 (461)
15 3gw9_A Sterol 14alpha-demethyl 99.9 3E-22 1E-26 161.8 5.3 147 53-206 2-151 (450)
16 1r9o_A Cytochrome P450 2C9; mo 99.8 2.6E-21 8.9E-26 157.6 8.9 149 54-207 11-161 (477)
17 2ve3_A Putative cytochrome P45 99.8 3.5E-21 1.2E-25 155.7 8.4 147 50-207 8-155 (444)
18 3n9y_A Cholesterol SIDE-chain 99.8 8.3E-21 2.8E-25 154.9 9.4 156 48-207 3-170 (487)
19 3i3k_A Lanosterol 14-alpha dem 99.8 2E-21 6.8E-26 157.7 5.6 147 50-203 7-154 (461)
20 2cib_A Cytochrome P450 51; hem 99.8 6.6E-20 2.3E-24 148.6 8.2 143 54-206 4-147 (455)
21 3v8d_A Cholesterol 7-alpha-mon 99.8 7.4E-21 2.5E-25 155.5 1.5 132 47-183 6-139 (491)
22 2cd8_A Cytochrome P450 monooxy 99.8 6.2E-20 2.1E-24 148.1 6.9 147 51-205 23-175 (436)
23 3dbg_A Putative cytochrome P45 99.8 4.3E-20 1.5E-24 150.1 4.7 142 53-206 22-165 (467)
24 1n97_A CYP175A1; electron tran 99.7 4E-19 1.4E-23 141.3 2.3 138 57-207 2-140 (389)
25 1jfb_A Nitric-oxide reductase 99.7 9.5E-18 3.2E-22 134.0 9.8 140 55-200 2-146 (404)
26 3mdm_A Cholesterol 24-hydroxyl 99.7 1.6E-17 5.5E-22 134.4 10.8 130 73-207 9-144 (456)
27 1izo_A P450bsbeta, cytochrome 99.7 1E-17 3.4E-22 134.4 8.1 137 62-206 8-145 (417)
28 3dsk_A Cytochrome P450 74A, ch 99.7 6.9E-18 2.3E-22 138.0 6.3 156 48-206 22-193 (495)
29 3dax_A Cytochrome P450 7A1; ch 99.7 1.9E-18 6.6E-23 141.0 3.0 131 48-184 7-140 (491)
30 1ued_A P450 OXYC, P450 monooxy 99.7 3.4E-17 1.2E-21 131.0 9.6 141 52-206 8-160 (406)
31 3awm_A Fatty acid alpha-hydrox 99.7 2.3E-17 7.8E-22 132.2 7.6 140 56-206 4-144 (415)
32 2zbx_A Cytochrome P450-SU1; be 99.7 3.1E-16 1.1E-20 125.6 9.2 138 53-199 4-150 (412)
33 3b6h_A Prostacyclin synthase; 99.6 1.3E-16 4.6E-21 130.4 5.4 129 49-184 13-142 (498)
34 1s1f_A Putative cytochrome P45 99.6 1E-15 3.5E-20 122.4 9.7 131 54-196 8-145 (406)
35 3b98_A Prostaglandin I2 syntha 99.6 3.2E-17 1.1E-21 133.2 1.0 128 49-185 13-142 (475)
36 3dan_A Cytochrome P450 74A2; A 99.6 3.3E-16 1.1E-20 127.2 6.4 154 50-206 5-175 (473)
37 3abb_A CYP105D6, cytochrome P4 99.6 3E-15 1E-19 119.7 9.8 119 73-199 23-149 (408)
38 3ivy_A Cytochrome P450 CYP125; 99.6 4.5E-15 1.6E-19 119.6 9.3 127 54-185 18-160 (433)
39 3oo3_A OXY protein; cytochrome 99.6 4.5E-15 1.6E-19 117.7 9.1 121 73-200 11-135 (384)
40 2jjn_A Cytochrome P450 113A1; 99.6 2.9E-15 9.9E-20 119.9 7.2 134 47-205 12-146 (411)
41 1cpt_A Cytochrome P450-TERP; o 99.6 5.3E-15 1.8E-19 119.0 7.9 143 52-206 4-165 (428)
42 3aba_A Cytochrome P450; oxidor 99.6 8.5E-15 2.9E-19 116.9 9.0 116 73-196 18-139 (403)
43 2zwu_A Camphor 5-monooxygenase 99.6 1.7E-14 5.9E-19 115.6 10.4 145 50-205 7-162 (415)
44 1odo_A Putative cytochrome P45 99.6 7.3E-15 2.5E-19 117.5 8.0 127 73-205 14-151 (408)
45 2z36_A MOXA, cytochrome P450 t 99.5 3.2E-14 1.1E-18 114.0 9.8 134 52-196 5-148 (413)
46 1z8o_A 6-deoxyerythronolide B 99.5 2.3E-14 7.9E-19 114.4 8.5 124 73-205 13-151 (404)
47 3ejb_B Biotin biosynthesis cyt 99.5 4.7E-14 1.6E-18 112.5 9.9 115 73-195 12-130 (404)
48 3a4g_A Vitamin D hydroxylase; 99.5 2.4E-14 8.4E-19 114.6 8.2 124 73-205 19-148 (411)
49 3tyw_A Putative cytochrome P45 99.5 3.4E-14 1.2E-18 113.9 8.9 124 73-204 28-160 (417)
50 2y5n_A MYCG, P-450-like protei 99.5 2.9E-14 1E-18 114.3 7.5 117 73-197 36-156 (417)
51 2xbk_A PIMD protein; epoxidati 99.5 6.2E-14 2.1E-18 112.0 9.3 125 73-205 25-159 (404)
52 2wm5_A CYP124, putative cytoch 99.5 7E-14 2.4E-18 112.7 9.1 128 74-206 44-182 (435)
53 4fb2_A P450CIN; heme, monooxyg 99.5 3.1E-14 1.1E-18 113.4 6.6 109 73-185 18-128 (398)
54 1gwi_A CYP154C1, cytochrome P4 99.5 5.6E-14 1.9E-18 112.5 7.4 118 73-199 16-147 (411)
55 3lxh_A Cytochrome P450; heme, 99.5 2.4E-13 8.3E-18 109.1 10.3 108 74-185 38-146 (421)
56 2z3t_A Cytochrome P450; monoxy 99.4 4.3E-13 1.5E-17 107.8 10.2 124 74-206 20-160 (425)
57 2uuq_A CYP130, cytochrome P450 99.4 2.6E-13 9E-18 108.7 8.8 123 73-205 24-157 (414)
58 2dkk_A Cytochrome P450; CYP158 99.4 1.8E-13 6.1E-18 109.5 7.2 126 73-206 26-159 (411)
59 3tkt_A Cytochrome P450; aromat 99.4 2.5E-13 8.5E-18 109.9 7.7 123 76-205 47-186 (450)
60 1q5d_A P450 epoxidase; cytochr 99.4 3.1E-13 1.1E-17 108.4 8.2 123 73-206 25-157 (419)
61 3mgx_A Putative P450 monooxyge 99.4 4.5E-13 1.6E-17 107.3 7.7 119 73-198 36-159 (415)
62 3oft_A Cytochrome P450, CYP101 99.4 9E-13 3.1E-17 104.8 9.0 108 73-185 23-130 (396)
63 2xkr_A CYP142, putative cytoch 99.4 4.4E-13 1.5E-17 106.8 6.9 119 73-205 17-136 (398)
64 1lfk_A OXYB, P450 monooxygenas 99.4 4.6E-13 1.6E-17 106.7 5.8 115 79-200 18-144 (398)
65 3nc3_A Cytochrome P450 CYPX; c 99.4 2.2E-13 7.4E-18 110.0 2.9 105 74-185 53-157 (441)
66 3buj_A CALO2; heme, iron, meta 99.3 1.5E-12 5E-17 103.7 6.7 121 74-206 13-141 (397)
67 3r9b_A Cytochrome P450 164A2; 99.3 3.6E-12 1.2E-16 102.1 8.4 104 73-184 28-139 (418)
68 1n40_A P450 MT2, cytochrome P4 99.3 6.6E-13 2.3E-17 105.7 4.0 112 73-196 15-134 (396)
69 3rwl_A Cytochrome P450 alkane 99.3 7.9E-12 2.7E-16 100.4 9.0 115 74-195 38-161 (426)
70 1io7_A Cytochrome P450 CYP119; 99.2 6.5E-12 2.2E-16 99.0 5.5 118 76-206 1-129 (368)
71 2rfb_A Cytochrome P450; heme, 99.2 1.1E-11 3.8E-16 96.8 4.5 89 85-184 2-90 (343)
72 3b4x_A 367AA long hypothetical 99.1 2.1E-11 7.3E-16 96.1 4.4 114 76-205 1-125 (367)
73 4dnj_A Putative cytochrome P45 99.1 3.2E-10 1.1E-14 90.7 10.5 120 61-186 19-144 (412)
74 3p3o_A Cytochrome P450; monoox 99.1 1E-11 3.4E-16 99.5 0.4 106 73-183 32-142 (416)
75 2wiy_A XPLA-heme, cytochrome P 99.0 1.8E-10 6E-15 91.7 3.6 118 74-203 20-137 (394)
76 4dxy_A Cytochrome P450, CYP101 98.7 1.5E-07 5.3E-12 75.3 10.9 108 74-185 37-145 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 97.4 5.5E-07 1.9E-11 71.2 -8.7 107 56-184 36-153 (381)
78 1s79_A Lupus LA protein; RRM, 80.2 8 0.00027 23.8 6.8 59 62-123 13-79 (103)
79 3lqv_A PRE-mRNA branch site pr 76.9 11 0.00037 23.4 7.6 58 55-115 3-66 (115)
80 1iqt_A AUF1, heterogeneous nuc 75.0 7.6 0.00026 21.8 5.0 47 75-121 11-66 (75)
81 3d2w_A TAR DNA-binding protein 72.0 9.6 0.00033 22.6 5.0 52 58-112 9-64 (89)
82 2krb_A Eukaryotic translation 68.4 14 0.00049 21.1 7.5 51 64-115 5-66 (81)
83 2mss_A Protein (musashi1); RNA 67.8 14 0.00047 20.7 5.2 48 75-122 11-67 (75)
84 1whv_A Poly(A)-specific ribonu 64.4 14 0.00047 22.8 4.4 45 70-114 22-67 (100)
85 2nlw_A Eukaryotic translation 60.9 25 0.00086 21.3 6.2 54 61-115 16-80 (105)
86 3ctr_A Poly(A)-specific ribonu 60.7 7.4 0.00025 24.1 2.7 55 70-124 12-69 (101)
87 2diu_A KIAA0430 protein; struc 58.5 29 0.00099 21.2 5.8 62 63-125 12-76 (96)
88 3s8s_A Histone-lysine N-methyl 57.1 29 0.00098 21.4 5.3 52 61-115 7-67 (110)
89 1sjq_A Polypyrimidine tract-bi 56.8 32 0.0011 21.3 6.4 55 57-114 13-70 (105)
90 2ad9_A Polypyrimidine tract-bi 54.9 38 0.0013 21.5 5.9 53 59-114 30-85 (119)
91 1x4c_A Splicing factor, argini 54.4 34 0.0012 20.8 6.9 51 62-115 17-69 (108)
92 2cqc_A Arginine/serine-rich sp 54.2 30 0.001 20.2 6.6 56 57-115 12-76 (95)
93 1sjr_A Polypyrimidine tract-bi 53.7 48 0.0016 22.4 6.2 49 64-115 50-103 (164)
94 4fxv_A ELAV-like protein 1; RN 53.5 34 0.0012 20.5 5.2 50 63-115 22-80 (99)
95 1x4e_A RNA binding motif, sing 53.4 25 0.00084 20.2 4.4 51 61-114 6-65 (85)
96 3beg_B Splicing factor, argini 52.2 39 0.0013 20.9 6.5 59 62-123 18-79 (115)
97 3s6e_A RNA-binding protein 39; 52.1 25 0.00086 22.1 4.4 68 56-123 3-83 (114)
98 2kxn_B Transformer-2 protein h 49.9 47 0.0016 21.1 8.8 54 59-115 45-107 (129)
99 4f25_A Polyadenylate-binding p 48.0 46 0.0016 20.5 5.3 50 63-115 8-64 (115)
100 1x4d_A Matrin 3; structural ge 47.5 46 0.0016 20.3 6.2 55 58-114 13-70 (102)
101 3s7r_A Heterogeneous nuclear r 47.0 28 0.00096 20.0 3.9 53 61-116 12-73 (87)
102 1whx_A Hypothetical protein ri 46.9 48 0.0016 20.3 6.9 59 63-124 13-75 (111)
103 1p27_B RNA-binding protein 8A; 46.6 45 0.0015 20.0 6.4 57 63-122 26-92 (106)
104 2dnz_A Probable RNA-binding pr 46.6 42 0.0014 19.6 7.2 61 61-124 6-76 (95)
105 2la6_A RNA-binding protein FUS 46.2 44 0.0015 19.7 6.6 59 61-122 14-90 (99)
106 2wbr_A GW182, gawky, LD47780P; 46.2 46 0.0016 20.0 6.3 51 62-115 9-62 (89)
107 2cq1_A PTB-like protein L; RRM 45.8 48 0.0017 20.1 5.7 52 60-114 15-69 (101)
108 2jwn_A Embryonic polyadenylate 44.6 44 0.0015 20.8 4.8 48 64-114 40-96 (124)
109 1rk8_A CG8781-PA, CG8781-PA pr 44.5 62 0.0021 21.4 5.8 50 63-115 75-133 (165)
110 2jvr_A Nucleolar protein 3; RN 43.9 56 0.0019 20.2 5.7 51 62-115 30-86 (111)
111 2l2t_A Receptor tyrosine-prote 43.6 33 0.0011 17.6 3.5 6 43-48 32-37 (44)
112 2hvz_A Splicing factor, argini 43.1 51 0.0017 19.5 5.5 41 75-115 12-56 (101)
113 1uaw_A Mouse-musashi-1; RNP-ty 42.9 33 0.0011 19.0 3.7 47 76-122 13-68 (77)
114 2d9p_A Polyadenylate-binding p 42.3 53 0.0018 19.5 6.7 61 59-122 14-82 (103)
115 3bs9_A Nucleolysin TIA-1 isofo 42.2 47 0.0016 18.9 5.2 51 62-115 8-67 (87)
116 2dgv_A HnRNP M, heterogeneous 42.1 49 0.0017 19.1 7.2 59 62-123 10-76 (92)
117 4f02_A Polyadenylate-binding p 41.4 54 0.0019 22.7 5.3 54 59-115 14-76 (213)
118 3zzy_A Polypyrimidine tract-bi 40.8 60 0.0021 20.9 4.9 50 63-115 31-85 (130)
119 1whw_A Hypothetical protein ri 39.9 57 0.0019 19.2 5.9 51 62-115 10-69 (99)
120 1x4f_A Matrin 3; structural ge 39.7 44 0.0015 20.9 4.1 54 59-114 24-80 (112)
121 3mdf_A Peptidyl-prolyl CIS-tra 39.6 51 0.0018 18.6 6.4 52 61-115 8-68 (85)
122 3ucg_A Polyadenylate-binding p 39.6 53 0.0018 18.8 4.9 44 75-118 18-70 (89)
123 2kvi_A Nuclear polyadenylated 39.4 58 0.002 19.1 6.4 60 62-123 12-73 (96)
124 2do4_A Squamous cell carcinoma 39.3 59 0.002 19.2 6.7 51 62-115 19-77 (100)
125 2x1f_A MRNA 3'-END-processing 38.9 58 0.002 19.0 5.9 50 63-115 5-63 (96)
126 3v4m_A Splicing factor U2AF 65 38.5 66 0.0023 19.6 5.2 47 78-124 30-88 (105)
127 2cq3_A RNA-binding protein 9; 38.0 63 0.0022 19.2 7.0 52 61-115 16-74 (103)
128 2rs2_A Musashi-1, RNA-binding 37.8 68 0.0023 19.5 5.2 52 62-116 27-87 (109)
129 2e5h_A Zinc finger CCHC-type a 37.5 60 0.0021 18.8 7.0 52 61-115 17-77 (94)
130 1wf0_A TDP-43, TAR DNA-binding 37.5 46 0.0016 19.1 3.8 48 63-113 8-59 (88)
131 2cqb_A Peptidyl-prolyl CIS-tra 37.5 64 0.0022 19.1 5.2 54 59-115 11-73 (102)
132 2ywk_A Putative RNA-binding pr 37.4 61 0.0021 18.8 4.8 51 62-115 18-76 (95)
133 2pe8_A Splicing factor 45; RRM 37.3 64 0.0022 19.6 4.5 67 57-123 5-84 (105)
134 2voo_A Lupus LA protein; RNA-b 36.9 55 0.0019 22.5 4.6 51 64-117 113-171 (193)
135 1wex_A Hypothetical protein (r 36.9 71 0.0024 19.4 6.7 53 59-114 14-69 (104)
136 1x5u_A Splicing factor 3B subu 36.6 67 0.0023 19.1 7.9 59 62-123 17-85 (105)
137 3ex7_B RNA-binding protein 8A; 36.5 76 0.0026 19.7 7.4 59 62-123 24-92 (126)
138 2cpf_A RNA binding motif prote 36.4 65 0.0022 18.8 6.0 51 62-115 7-69 (98)
139 2fy1_A RNA-binding motif prote 36.4 75 0.0026 19.6 6.0 59 62-123 9-76 (116)
140 2dhg_A TRNA selenocysteine ass 36.3 68 0.0023 19.0 8.0 56 57-115 6-70 (104)
141 1nu4_A U1A RNA binding domain; 36.0 65 0.0022 18.8 6.2 54 62-115 10-70 (97)
142 1x4b_A Heterogeneous nuclear r 35.8 42 0.0014 20.6 3.6 51 63-116 30-89 (116)
143 2dnm_A SRP46 splicing factor; 35.6 70 0.0024 19.0 6.5 59 62-123 15-83 (103)
144 1oo0_B CG8781-PA, drosophila Y 35.4 73 0.0025 19.1 6.1 50 63-115 29-87 (110)
145 1p1t_A Cleavage stimulation fa 35.2 71 0.0024 18.9 5.3 50 63-115 11-69 (104)
146 3n9u_C Cleavage and polyadenyl 35.2 91 0.0031 20.5 5.4 41 75-115 67-118 (156)
147 3ulh_A THO complex subunit 4; 34.8 73 0.0025 19.0 5.6 51 62-115 31-89 (107)
148 3md3_A Nuclear and cytoplasmic 34.6 88 0.003 20.1 5.3 40 76-115 13-60 (166)
149 3r27_A HnRNP L, heterogeneous 34.6 79 0.0027 19.3 6.3 54 59-115 20-76 (100)
150 2d9o_A DNAJ (HSP40) homolog, s 34.5 78 0.0027 19.2 6.2 40 76-115 30-73 (100)
151 2cq4_A RNA binding motif prote 34.4 68 0.0023 19.5 4.4 47 64-113 29-84 (114)
152 2dgs_A DAZ-associated protein 34.2 72 0.0025 18.7 7.3 59 62-123 12-79 (99)
153 2cjk_A Nuclear polyadenylated 34.2 73 0.0025 20.7 4.8 56 63-121 90-154 (167)
154 2adc_A Polypyrimidine tract-bi 34.1 1.2E+02 0.0041 21.2 7.3 51 62-114 36-90 (229)
155 1x4h_A RNA-binding protein 28; 34.0 77 0.0027 19.0 7.5 52 61-115 16-76 (111)
156 3md1_A Nuclear and cytoplasmic 33.9 64 0.0022 18.0 5.0 41 75-115 13-62 (83)
157 1x5p_A Negative elongation fac 33.6 74 0.0025 18.6 6.7 50 61-115 16-68 (97)
158 1wg5_A Heterogeneous nuclear r 33.3 79 0.0027 18.9 6.3 59 62-123 17-84 (104)
159 1l3k_A Heterogeneous nuclear r 33.1 86 0.0029 21.0 5.2 56 62-120 15-79 (196)
160 2dnh_A Bruno-like 5, RNA bindi 33.0 78 0.0027 18.8 6.4 52 61-115 16-75 (105)
161 2cpj_A Non-POU domain-containi 32.7 77 0.0026 18.6 5.6 59 62-123 17-79 (99)
162 2xnq_A Nuclear polyadenylated 32.5 79 0.0027 18.7 6.4 51 63-115 25-76 (97)
163 2cpi_A CCR4-NOT transcription 32.2 41 0.0014 20.5 3.1 52 61-115 16-82 (111)
164 2dh8_A DAZ-associated protein 31.8 83 0.0028 18.7 5.3 53 62-117 18-79 (105)
165 1wi8_A EIF-4B, eukaryotic tran 31.6 83 0.0029 18.7 5.5 55 59-117 14-78 (104)
166 1b35_D CRPV, protein (cricket 31.6 18 0.00063 18.9 1.0 27 61-88 30-56 (57)
167 2i2y_A Fusion protein consists 31.4 1.1E+02 0.0036 19.8 8.3 59 62-123 75-138 (150)
168 2dnp_A RNA-binding protein 14; 31.3 77 0.0026 18.2 7.4 52 61-115 10-62 (90)
169 2dis_A Unnamed protein product 31.1 87 0.003 18.7 5.9 51 62-115 10-71 (109)
170 2dnq_A RNA-binding protein 4B; 31.0 78 0.0027 18.2 6.3 52 61-115 9-61 (90)
171 2div_A TRNA selenocysteine ass 30.7 83 0.0028 18.4 6.3 54 59-115 8-71 (99)
172 1why_A Hypothetical protein ri 30.5 84 0.0029 18.3 7.8 52 61-115 18-72 (97)
173 2err_A Ataxin-2-binding protei 30.4 87 0.003 18.9 4.4 50 63-115 32-88 (109)
174 2jrs_A RNA-binding protein 39; 30.4 93 0.0032 18.8 7.2 59 62-123 28-96 (108)
175 2dit_A HIV TAT specific factor 30.3 86 0.0029 19.1 4.3 60 56-115 11-83 (112)
176 2jwa_A Receptor tyrosine-prote 30.2 60 0.0021 16.6 3.7 7 43-49 33-39 (44)
177 1fxl_A Paraneoplastic encephal 29.9 1.1E+02 0.0038 19.6 5.6 49 64-115 6-63 (167)
178 2dgo_A Cytotoxic granule-assoc 29.8 96 0.0033 18.8 6.6 52 61-115 16-76 (115)
179 2ytc_A PRE-mRNA-splicing facto 29.6 79 0.0027 17.8 7.5 51 62-115 14-67 (85)
180 2bz2_A Negative elongation fac 29.4 98 0.0033 19.3 4.5 55 62-121 41-99 (121)
181 3tyt_A Heterogeneous nuclear r 29.3 1.4E+02 0.0048 20.6 5.8 52 62-115 6-61 (205)
182 2qfj_A FBP-interacting repress 29.2 1.4E+02 0.0046 20.3 7.4 57 64-123 32-98 (216)
183 3pgw_S U1-70K; protein-RNA com 28.6 1.6E+02 0.0056 23.3 6.6 52 61-115 103-163 (437)
184 2cph_A RNA binding motif prote 28.3 97 0.0033 18.4 8.8 59 62-123 17-87 (107)
185 2jvo_A Nucleolar protein 3; nu 28.2 1E+02 0.0035 18.6 5.5 50 63-115 34-84 (108)
186 2xs2_A Deleted in azoospermia- 28.2 39 0.0013 20.1 2.4 49 63-114 12-68 (102)
187 2kn4_A Immunoglobulin G-bindin 28.1 1.2E+02 0.0042 19.5 7.2 51 62-115 72-131 (158)
188 2a3j_A U1 small nuclear ribonu 28.0 1.2E+02 0.004 19.2 7.4 62 62-123 31-100 (127)
189 3ezh_A Nitrate/nitrite sensor 27.5 95 0.0032 19.7 4.2 44 145-189 66-110 (125)
190 4a8x_A RNA-binding protein wit 26.6 92 0.0031 17.6 5.9 49 64-115 8-66 (88)
191 2e5g_A U6 snRNA-specific termi 26.6 99 0.0034 17.9 4.5 50 63-115 11-64 (94)
192 2ku7_A MLL1 PHD3-CYP33 RRM chi 26.5 1.2E+02 0.0042 18.9 7.2 49 64-115 67-124 (140)
193 2cpx_A Hypothetical protein FL 26.4 1.1E+02 0.0038 18.4 5.8 52 61-115 26-86 (115)
194 3p5t_L Cleavage and polyadenyl 26.4 98 0.0033 17.8 4.4 57 64-123 5-73 (90)
195 2dgt_A RNA-binding protein 30; 26.0 1E+02 0.0034 17.7 6.4 51 62-115 12-63 (92)
196 1x5t_A Splicing factor 3B subu 25.7 1E+02 0.0035 17.8 4.2 51 62-115 7-67 (96)
197 1x5s_A Cold-inducible RNA-bind 25.5 1.1E+02 0.0037 18.0 8.0 60 61-123 13-82 (102)
198 2ki2_A SS-DNA binding protein 25.5 1E+02 0.0034 17.6 4.1 40 75-115 13-61 (90)
199 1x4g_A Nucleolysin TIAR; struc 25.4 1.1E+02 0.0039 18.2 6.5 51 62-115 27-80 (109)
200 2cpz_A CUG triplet repeat RNA- 25.3 1.2E+02 0.004 18.4 6.2 51 62-115 27-86 (115)
201 1wf1_A RNA-binding protein RAL 25.2 1.2E+02 0.004 18.2 6.1 51 62-115 29-81 (110)
202 2ghp_A U4/U6 snRNA-associated 25.0 1.2E+02 0.0039 22.1 4.9 60 61-123 42-108 (292)
203 1qm9_A Polypyrimidine tract-bi 24.9 1.6E+02 0.0055 19.7 6.0 48 76-123 17-69 (198)
204 2cq2_A Hypothetical protein LO 24.8 1.3E+02 0.0045 18.7 6.9 54 59-115 24-82 (114)
205 3ue2_A Poly(U)-binding-splicin 24.7 1.3E+02 0.0046 18.7 4.7 66 59-124 19-100 (118)
206 3ns6_A Eukaryotic translation 24.4 1.2E+02 0.004 18.0 5.4 60 62-121 8-80 (100)
207 2cpy_A RNA-binding protein 12; 24.1 96 0.0033 18.9 3.7 55 59-116 14-77 (114)
208 2lea_A Serine/arginine-rich sp 23.9 1.4E+02 0.0049 18.9 7.3 51 62-115 49-108 (135)
209 1x4a_A Splicing factor, argini 23.1 1.3E+02 0.0044 18.0 7.5 51 62-115 24-80 (109)
210 2khc_A Testis-specific RNP-typ 23.1 1.3E+02 0.0046 18.2 4.8 49 64-115 44-101 (118)
211 2cq0_A Eukaryotic translation 22.9 1.2E+02 0.0043 17.8 4.6 51 62-115 17-76 (103)
212 2f3j_A RNA and export factor b 22.8 1.8E+02 0.0061 19.5 7.2 41 75-115 100-148 (177)
213 1h2v_Z 20 kDa nuclear CAP bind 22.6 1.6E+02 0.0056 19.0 6.3 52 61-115 40-100 (156)
214 2dgx_A KIAA0430 protein; RRM d 22.5 1.2E+02 0.0042 17.6 7.1 54 62-115 11-71 (96)
215 3fgx_A Rbstp2171; structural g 22.2 60 0.002 20.5 2.3 18 78-95 8-25 (114)
216 2dgp_A Bruno-like 4, RNA bindi 22.1 1.3E+02 0.0045 17.7 6.8 51 62-115 15-74 (106)
217 2dng_A Eukaryotic translation 21.8 1.3E+02 0.0045 17.7 5.1 58 56-117 11-77 (103)
218 2j76_E EIF-4B, EIF4B, eukaryot 21.7 1.3E+02 0.0045 17.6 4.6 55 64-122 23-87 (100)
219 2la4_A Nuclear and cytoplasmic 20.9 1.4E+02 0.0047 17.5 5.9 50 63-115 30-82 (101)
220 1wez_A HnRNP H', FTP-3, hetero 20.4 1.1E+02 0.0037 18.3 3.4 59 62-124 17-83 (102)
221 3tht_A Alkylated DNA repair pr 20.4 2.9E+02 0.01 21.1 7.1 63 52-115 10-75 (345)
222 1u6f_A Tcubp1, RNA-binding pro 20.3 1.7E+02 0.0058 18.3 6.7 50 63-115 45-103 (139)
223 2hgn_A Heterogeneous nuclear r 20.1 1.8E+02 0.0063 18.7 5.3 59 62-124 48-114 (139)
No 1
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.92 E-value=1.9e-25 Score=182.17 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=126.7
Q ss_pred hCCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhC-CCCCCCCCCC
Q 028387 48 RSSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTH-DIVISNRPKT 126 (210)
Q Consensus 48 ~~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~-~~~~~~~~~~ 126 (210)
..+++.+.+|||+++|++||++.+ ..+++.++.+|+++|||++++++|+.+.++++||+++++++.++ ...|.+++..
T Consensus 8 ~~~~k~~~~PGP~~~PliGn~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~ 86 (485)
T 3nxu_A 8 HGLFKKLGIPGPTPLPFLGNILSY-HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPF 86 (485)
T ss_dssp TTHHHHHTCCCCCCBTTTBTGGGG-GGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCC
T ss_pred chHHhhCCCCCCCCcCeecCcHHh-hcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccc
Confidence 344455679999999999999998 67889999999999999999999999999999999999999887 5567666543
Q ss_pred hhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 127 TPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
.... ..+.++ +..+|+.|+++||++ +++|+.++++.+.+.+.++++.+++.+.+..++++.+|+.+.+..++.++
T Consensus 87 ~~~~---~~~~~l-~~~~g~~w~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~g~~~d~~~~~~~~~~dv 161 (485)
T 3nxu_A 87 GPVG---FMKSAI-SIAEDEEWKRLRSLL-SPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDV 161 (485)
T ss_dssp SCCG---GGGGST-TTCCHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHH
T ss_pred cccc---ccccCc-cccCCcHHHHHHhhc-ChhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHH
Confidence 2222 124444 455699999999999 79999999999999999999999999987655566788888777776654
Q ss_pred c
Q 028387 207 V 207 (210)
Q Consensus 207 ~ 207 (210)
+
T Consensus 162 i 162 (485)
T 3nxu_A 162 I 162 (485)
T ss_dssp H
T ss_pred H
Confidence 4
No 2
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.91 E-value=5.7e-24 Score=174.00 Aligned_cols=153 Identities=22% Similarity=0.344 Sum_probs=121.7
Q ss_pred CCCCCCCCCCCCCccccccccCC-CChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhH
Q 028387 51 NHLNLPPSPPKLPILGNLHQLLG-TLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPA 129 (210)
Q Consensus 51 ~~~~~~pgp~~~p~lG~~~~~~~-~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~ 129 (210)
+..+.||||+++|++||++++.. ..++..+.+|+++|||++++++|+.+.++++||+++++++.+++..|.+++.....
T Consensus 5 ~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~ 84 (494)
T 3swz_A 5 TGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATL 84 (494)
T ss_dssp -------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHH
T ss_pred CCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHH
Confidence 45667999999999999998843 36789999999999999999999999999999999999999998899888876655
Q ss_pred HHhhhcCcceeecCCChhHHHHhHHHHHhhcCh--hHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 130 NILIYECQDISFSDYGEYWRQVRKICILQLLSV--RRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 130 ~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
......+.|++++.+|+.|+++||++ .+.|+. ..++.+.+.+.++++.+++.|.+. .+..+|+...+..++.++
T Consensus 85 ~~~~~~~~gl~~~~~g~~wr~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~t~dv 160 (494)
T 3swz_A 85 DIASNNRKGIAFADSGAHWQLHRRLA-MATFALFKDGDQKLEKIICQEISTLCDMLATH--NGQSIDISFPVFVAVTNV 160 (494)
T ss_dssp HHHTTTTCSSSSSCSSHHHHHHHHHH-HHHTTTTSSSTTCHHHHHHHHHHHHHHHHHHT--TTEEECCHHHHHHHHHHH
T ss_pred HHhccCCCCeEeCCCCHHHHHHHHHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHc--CCCcccHHHHHHHHHHHH
Confidence 55554466777777799999999999 799874 456789999999999999999763 344677766665555443
No 3
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.91 E-value=5e-24 Score=174.66 Aligned_cols=156 Identities=17% Similarity=0.338 Sum_probs=108.1
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChh
Q 028387 49 SSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTP 128 (210)
Q Consensus 49 ~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~ 128 (210)
+.++.+.||||+++|++||+..+ ..+++..+.+|+++||++|++++++.+.++++||+++++|+.+++..|.+++....
T Consensus 4 ~~~~~~~pPgP~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~ 82 (507)
T 3pm0_A 4 KTSSKGKPPGPFAWPLIGNAAAV-GQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFAS 82 (507)
T ss_dssp -------------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHH
T ss_pred ccCCCCCCcCCCCCCeeCchhhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchH
Confidence 34556789999999999999998 67899999999999999999999999999999999999999888888888876554
Q ss_pred HHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHH------hhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhh
Q 028387 129 ANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRV------QSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSL 202 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l------~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~ 202 (210)
..... .|.+++++.+|+.|+++||++ .+.|+.... +.+.+.+.++++++++.+.+..+++..+|+.+.+..+
T Consensus 83 ~~~~~-~g~~l~~~~~g~~w~~~R~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~ 160 (507)
T 3pm0_A 83 FRVVS-GGRSMAFGHYSEHWKVQRRAA-HSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVA 160 (507)
T ss_dssp HHHGG-GGTCSSSSCSSHHHHHHHHHH-HHHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGGCCBCCHHHHHHH
T ss_pred HHhhc-CCCceEECCCChHHHHHHHHH-HHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccCCCcChHHHHHHH
Confidence 44333 356777777799999999999 687664433 3388999999999999998866556678887777776
Q ss_pred ccccc
Q 028387 203 SSGKV 207 (210)
Q Consensus 203 ~~~t~ 207 (210)
+.+++
T Consensus 161 ~~dvi 165 (507)
T 3pm0_A 161 VANVM 165 (507)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 4
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.90 E-value=3.6e-24 Score=175.43 Aligned_cols=154 Identities=15% Similarity=0.156 Sum_probs=122.4
Q ss_pred CCCCCCCCCCCCCccccccccCC---CChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCCh
Q 028387 51 NHLNLPPSPPKLPILGNLHQLLG---TLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTT 127 (210)
Q Consensus 51 ~~~~~~pgp~~~p~lG~~~~~~~---~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~ 127 (210)
++.+.||||+++|++||++.+.. ...+..+.+|+++|||++++++|+.+.++++||++++++++++ .|.+++...
T Consensus 42 ~~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~~--~~~~r~~~~ 119 (503)
T 3s79_A 42 EGTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKHN--HYSSRFGSK 119 (503)
T ss_dssp ---CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHSG--GGCCCCCCH
T ss_pred hccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhcC--CCCCcchhh
Confidence 45678999999999999988721 2445688999999999999999999999999999999999643 566665443
Q ss_pred hH-HHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 128 PA-NILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 128 ~~-~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
.. ......+.+++++.+|+.|+++||++ .++|+..+++++.+.+.++++++++.|.+..+.++.+|+.+.+..++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~-~~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~vdl~~~~~~~~~~v 198 (503)
T 3s79_A 120 LGLQCIGMHEKGIIFNNNPELWKTTRPFF-MKALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDT 198 (503)
T ss_dssp HHHHHHTCTTSSSTTCCCHHHHHHHHHHH-HHHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCTTSCBCHHHHHHHHHHHH
T ss_pred hhhhhhccCCCceeeCCCccHHHHHHHhh-hHhhChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHHHHH
Confidence 22 22333466777788899999999999 79999999999999999999999999887655566788877777666554
Q ss_pred c
Q 028387 207 V 207 (210)
Q Consensus 207 ~ 207 (210)
+
T Consensus 199 i 199 (503)
T 3s79_A 199 S 199 (503)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.90 E-value=4.9e-24 Score=174.34 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=116.6
Q ss_pred hCCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCCh
Q 028387 48 RSSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTT 127 (210)
Q Consensus 48 ~~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~ 127 (210)
+..++.+.||||++ ++++...+++..+.+|+++|||++++++|+.+.++++||+++++++.+++..|.+++...
T Consensus 23 ~~~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~ 96 (496)
T 3qz1_A 23 WKLRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIP 96 (496)
T ss_dssp ------CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCT
T ss_pred hhccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcc
Confidence 34456678999986 455546789999999999999999999999999999999999999998887888777644
Q ss_pred hHHHhhhcCc-ceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 128 PANILIYECQ-DISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 128 ~~~~~~~~~~-~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
....... +. +++++++|+.|+++||++ ++.|+.+.++.+.+.+.++++++++.|.+ +.++.+|+.+.+..++.++
T Consensus 97 ~~~~~~~-~~~~l~~~~~g~~w~~~Rr~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l~~--~~~~~vd~~~~~~~~~~dv 172 (496)
T 3qz1_A 97 SYKLVSQ-RCQDISLGDYSLLWKAHKKLT-RSALLLGTRSSMEPWVDQLTQEFCERMRV--QAGAPVTIQKEFSLLTCSI 172 (496)
T ss_dssp TTTTSCT-TCCCSSSSCCSHHHHHHHHHH-HHHHHC--CCCHHHHHHHHHHHHHHHHHT--TCSCCCHHHHHHTHHHHHH
T ss_pred hHHHhcC-CCCceEECCCCHHHHHHHHHH-HHHHhhccHhhHHHHHHHHHHHHHHHHHh--cCCCccCHHHHHHHHHHHH
Confidence 3332222 33 665555599999999999 79999877888999999999999999986 3355788888887777665
Q ss_pred cc
Q 028387 207 VE 208 (210)
Q Consensus 207 ~~ 208 (210)
+-
T Consensus 173 i~ 174 (496)
T 3qz1_A 173 IC 174 (496)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 6
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.90 E-value=3.4e-23 Score=168.51 Aligned_cols=154 Identities=22% Similarity=0.332 Sum_probs=118.9
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChh
Q 028387 49 SSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTP 128 (210)
Q Consensus 49 ~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~ 128 (210)
..++.+.||||+++|++||++++...+++..+.+|+++|||||++++|++++|+++||+++++++.+++..|.+|+....
T Consensus 5 ~ss~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~ 84 (479)
T 3tbg_A 5 TSSKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPI 84 (479)
T ss_dssp ----CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGG
T ss_pred CCCCCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHH
Confidence 44555789999999999999998667899999999999999999999999999999999999999998888888877655
Q ss_pred HHHhh--hcCcceeecCCChhHHHHhHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcc
Q 028387 129 ANILI--YECQDISFSDYGEYWRQVRKICILQLLSVRRVQS--FQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSS 204 (210)
Q Consensus 129 ~~~~~--~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~--~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~ 204 (210)
..... ..+.+++++.+|+.|+++|+++ .+.|+...+.. +.+.+.+....+.+.+... .+..+|+.+....++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~g~~w~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~ 161 (479)
T 3tbg_A 85 TQILGFGPRSQGVFLARYGPAWREQRRFS-VSTLRNLGLGKKSLEQWVTEEAACLCAAFANH--SGRPFRPNGLLDKAVS 161 (479)
T ss_dssp GGGGTCBTTBCCSTTCCSSHHHHHHHHHH-HHHHHHTTSTTCHHHHHHHHHHHHHHHHHHTT--TTCCBCTHHHHHHHHH
T ss_pred HHHhccCCCCCceeeCCCCHHHHHHHHHH-HHHhcchhhhHHHHHHHHHHHHHHHHHHHHhc--cCCcccHHHHHHHHHH
Confidence 55443 2245677778899999999999 79988776653 3456666666666666543 3346677666655554
Q ss_pred c
Q 028387 205 G 205 (210)
Q Consensus 205 ~ 205 (210)
+
T Consensus 162 ~ 162 (479)
T 3tbg_A 162 N 162 (479)
T ss_dssp H
T ss_pred H
Confidence 3
No 7
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.89 E-value=5.1e-23 Score=167.59 Aligned_cols=157 Identities=16% Similarity=0.266 Sum_probs=124.5
Q ss_pred hCCCCCCCCCCCCCCCccccccccC----CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCC
Q 028387 48 RSSNHLNLPPSPPKLPILGNLHQLL----GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNR 123 (210)
Q Consensus 48 ~~~~~~~~~pgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~ 123 (210)
...++.+.+|||+++|++||++.+. ..+++..+.+|+++|||++++++|+.+.|+++||+++++|+.++ ..|.++
T Consensus 18 ~~~~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r 96 (482)
T 3k9v_A 18 GETRNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQR 96 (482)
T ss_dssp -CCEEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCC
T ss_pred cccCCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCC
Confidence 4557788899999999999998762 24678999999999999999999999999999999999999875 467777
Q ss_pred CCChhH---HHhhhcCcceeecCCChhHHHHhHHHHHhhc-ChhHHhhhHHHHHHHHHHHHHHHHhhcC-CCCCccchhh
Q 028387 124 PKTTPA---NILIYECQDISFSDYGEYWRQVRKICILQLL-SVRRVQSFQHVRNDEVSSLITKIRLSCL-HKGDFKTRNC 198 (210)
Q Consensus 124 ~~~~~~---~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f-~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~~~ 198 (210)
+..... ......+.++++ .+|+.|+++||++ .+.| +.+.++.+.+.+.++++++++.+++.++ +++.+|+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~-~~g~~w~~~Rr~~-~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~~~~ 174 (482)
T 3k9v_A 97 LEIKPWKAYRDHRNEAYGLMI-LEGQEWQRVRSAF-QKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSE 174 (482)
T ss_dssp CCCHHHHHHHHHHTCCCCTTT-CCHHHHHHHHHHH-HHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTHHHH
T ss_pred CCchHHHHHHHhcCCCCCcee-CCCchHHHHHHHh-hHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 653221 112223455544 4599999999999 6875 7888999999999999999999988654 4557888877
Q ss_pred hhhhccccc
Q 028387 199 QTSLSSGKV 207 (210)
Q Consensus 199 ~~~~~~~t~ 207 (210)
+..++.+++
T Consensus 175 ~~~~t~dvi 183 (482)
T 3k9v_A 175 LNKWSFESI 183 (482)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665543
No 8
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.88 E-value=2.3e-22 Score=163.54 Aligned_cols=151 Identities=24% Similarity=0.343 Sum_probs=118.5
Q ss_pred CCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhH
Q 028387 50 SNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPA 129 (210)
Q Consensus 50 ~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~ 129 (210)
.++.+.||||+++|++||++++...+++..+.+|+++||+++++++++.+.++++||+++++++.+++..|.+++.....
T Consensus 6 ~~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~ 85 (476)
T 3e6i_A 6 SSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAF 85 (476)
T ss_dssp ----CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGG
T ss_pred cCCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchh
Confidence 44567899999999999999986678999999999999999999999999999999999999999888788777654433
Q ss_pred HHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHH--hhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 130 NILIYECQDISFSDYGEYWRQVRKICILQLLSVRRV--QSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 130 ~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
.... ++++++ .+|+.|+++||+. .+.|+...+ +.+.+.+.++++.+++.|.+. .++.+|+.+.+..++.++
T Consensus 86 ~~~~--~~~l~~-~~g~~w~~~Rr~~-~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~dv 158 (476)
T 3e6i_A 86 HAHR--DRGIIF-NNGPTWKDIRRFS-LTTLRNYGMGKQGNESRIQREAHFLLEALRKT--QGQPFDPTFLIGCAPCNV 158 (476)
T ss_dssp GGGT--TSSSTT-CCSTTHHHHHHHH-HHHHHHTC-CCSHHHHHHHHHHHHHHHHHHTT--TTSCBCTHHHHTHHHHHH
T ss_pred heec--CCCEEe-cCCcHHHHHHHHH-HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHh--CCCCcChHHHHHHHHHHH
Confidence 3332 335544 4599999999998 688776544 356789999999999999764 345678877776666544
No 9
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=164.97 Aligned_cols=155 Identities=24% Similarity=0.430 Sum_probs=120.3
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChh
Q 028387 49 SSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTP 128 (210)
Q Consensus 49 ~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~ 128 (210)
+.++.+.+|||+++|++||+..+ ..+++..+.+|+++|||++++++++.++++++||+++++++.+++..|.+++....
T Consensus 11 ~~~~lp~~PgP~~~p~~G~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~ 89 (495)
T 2hi4_A 11 VPKGLKSPPEPWGWPLLGHVLTL-GKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYT 89 (495)
T ss_dssp CCTTCBCCCCCCCBTTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHH
T ss_pred CCCCCCCCCCCCCCcceeeHHhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHH
Confidence 33445556999999999999888 66889999999999999999999999999999999999999887667877765433
Q ss_pred HHHhhhcCcceeec-CCChhHHHHhHHHHHhhcCh---hHH---h---hhHHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 028387 129 ANILIYECQDISFS-DYGEYWRQVRKICILQLLSV---RRV---Q---SFQHVRNDEVSSLITKIRLSCLHKGDFKTRNC 198 (210)
Q Consensus 129 ~~~~~~~~~~~~~~-~~g~~wk~~Rk~~~~~~f~~---~~l---~---~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~ 198 (210)
..... .+.+++++ .+|+.|+++||++ +++|+. .+. + .+.+.+.++++++++.|.+.+++++.+|+.+.
T Consensus 90 ~~~~~-~~~~l~~~~~~g~~w~~~Rr~~-~~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~ 167 (495)
T 2hi4_A 90 STLIT-DGQSLTFSTDSGPVWAARRRLA-QNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQ 167 (495)
T ss_dssp HHTST-TSCCTTTSSCCSHHHHHHHHHH-HHHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTTSCBCHHHH
T ss_pred HHHhc-CCCCEEEcCCCChHHHHHHHHH-HHHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCCCccchHHH
Confidence 22221 24566666 4699999999999 788643 332 2 68899999999999999875444557888777
Q ss_pred hhhhcccc
Q 028387 199 QTSLSSGK 206 (210)
Q Consensus 199 ~~~~~~~t 206 (210)
+..++.++
T Consensus 168 ~~~~~~dv 175 (495)
T 2hi4_A 168 VVVSVANV 175 (495)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665444
No 10
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.87 E-value=1.1e-21 Score=159.87 Aligned_cols=150 Identities=24% Similarity=0.344 Sum_probs=121.9
Q ss_pred CCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHh
Q 028387 53 LNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANIL 132 (210)
Q Consensus 53 ~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~ 132 (210)
.+.||||+++|++||+..+...+++..+.+++++|||++++++++.+.++++||+++++|+.++...|.+++........
T Consensus 9 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~ 88 (476)
T 2fdv_A 9 GKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDWV 88 (476)
T ss_dssp CBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHHHH
T ss_pred CCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHhhh
Confidence 35689999999999999885578899999999999999999999999999999999999997776677766543323322
Q ss_pred hhcCcceeecCCChhHHHHhHHHHHhhcChhHH--hhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccccc
Q 028387 133 IYECQDISFSDYGEYWRQVRKICILQLLSVRRV--QSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 133 ~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t~ 207 (210)
. .+.+++++ +|+.|+++||++ .+.|+...+ +.+.+.+.++++.+++.|.+. .++.+|+.+.+..++.+++
T Consensus 89 ~-~~~~l~~~-~g~~~~~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~vi 160 (476)
T 2fdv_A 89 F-KGYGVVFS-NGERAKQLRRFS-IATLRDFGVGKRGIEERIQEEAGFLIDALRGT--GGANIDPTFFLSRTVSNVI 160 (476)
T ss_dssp H-TTCSSSSC-CHHHHHHHHHHH-HHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHT--TTCCBCCHHHHHHHHHHHH
T ss_pred c-CCCCeEec-CchHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHhc--CCCccChHHHHHHHHHHHH
Confidence 2 25566555 599999999999 799988766 789999999999999999764 2346888887777766554
No 11
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.87 E-value=1.1e-21 Score=159.85 Aligned_cols=151 Identities=26% Similarity=0.429 Sum_probs=120.2
Q ss_pred CCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHH
Q 028387 52 HLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANI 131 (210)
Q Consensus 52 ~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~ 131 (210)
+.+.||||+++|++||+..+...+++..+.+++++|||++++++++.+.++++||+++++|+.++...|.+++.......
T Consensus 8 ~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~ 87 (476)
T 1po5_A 8 KGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDP 87 (476)
T ss_dssp -CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCS
T ss_pred CCCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHh
Confidence 34578999999999999988557889999999999999999999999999999999999999877667776554222211
Q ss_pred hhhcCcceeecCCChhHHHHhHHHHHhhcChh--HHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccccc
Q 028387 132 LIYECQDISFSDYGEYWRQVRKICILQLLSVR--RVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 132 ~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t~ 207 (210)
. ..+.+++++ +|+.|+++||++ .+.|+.. .++.+.+.+.++++++++.|.+.. ++.+|+.+.+..++.+++
T Consensus 88 ~-~~~~~l~~~-~g~~w~~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~--~~~~d~~~~~~~~~~~vi 160 (476)
T 1po5_A 88 I-FQGYGVIFA-NGERWRALRRFS-LATMRDFGMGKRSVEERIQEEARCLVEELRKSK--GALLDNTLLFHSITSNII 160 (476)
T ss_dssp C-CSSCCCCCS-SHHHHHHHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTT--TCCBCCHHHHHHHHHHHH
T ss_pred h-cCCCceEec-CCcHHHHHHHHH-HHHHHHhCCChhHHHHHHHHHHHHHHHHHHhcC--CCccCHHHHHHHHHHHHH
Confidence 1 124566555 699999999999 7999877 557889999999999999998642 346788777777766554
No 12
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.86 E-value=1.7e-21 Score=159.00 Aligned_cols=152 Identities=21% Similarity=0.354 Sum_probs=118.6
Q ss_pred CCCCCCCCCCCCCccccccccCCCC--hhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChh
Q 028387 51 NHLNLPPSPPKLPILGNLHQLLGTL--PHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTP 128 (210)
Q Consensus 51 ~~~~~~pgp~~~p~lG~~~~~~~~~--~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~ 128 (210)
++.+.||||+++|++||+..+.... ++..+.+|+++|||++++++++.+.++++||+++++++.+++..|.+++....
T Consensus 9 ~~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~ 88 (481)
T 3czh_A 9 RPMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPL 88 (481)
T ss_dssp ---CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHH
T ss_pred CCCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHH
Confidence 4456799999999999998773333 88999999999999999999999999999999999999887767877765433
Q ss_pred HHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHH--hhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 129 ANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRV--QSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
...+.. +.+++++.+|+.|+++||++ +++|+...+ +.+.+.+.++++.+++.|.+. +++.+|+.+.+..++.++
T Consensus 89 ~~~~~~-~~~~~~~~~g~~w~~~R~~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~~v 164 (481)
T 3czh_A 89 FMKMTK-MGGLLNSRYGRGWVDHRRLA-VNSFRYFGYGQKSFESKILEETKFFNDAIETY--KGRPFDFKQLITNAVSNI 164 (481)
T ss_dssp HHHHHT-TCSSTTCCSSHHHHHHHHHH-HHHHHHTTTTSTTHHHHHHHHHHHHHHHHHTT--TTCCBCCHHHHHHHHHHH
T ss_pred HHhhcC-CCCeEeCCCChHHHHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc--CCCCcCHHHHHHHHHHHH
Confidence 333321 34556666799999999999 799986644 678999999999999999764 234678877776665443
No 13
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.86 E-value=4.4e-21 Score=156.13 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=116.5
Q ss_pred CCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHh
Q 028387 53 LNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANIL 132 (210)
Q Consensus 53 ~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~ 132 (210)
.+.+|||+++|++||++.+...+++..+.+|+++|||++++++++.+.++++||+++++++.++ .|. ++........
T Consensus 2 ~~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~~--~f~-~~~~~~~~~~ 78 (470)
T 2ij2_A 2 IKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDES--RFD-KNLSQALKFV 78 (470)
T ss_dssp -CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTT--TEE-ECCCHHHHHH
T ss_pred CCCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhhc--CcC-cCchhHHHHH
Confidence 3568999999999999998556788899999999999999999999999999999999999542 342 2221222111
Q ss_pred -hhcCcceeec-CCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 133 -IYECQDISFS-DYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 133 -~~~~~~~~~~-~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
...+.+++++ .+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+.. .++.+|+.+.+..++.++
T Consensus 79 ~~~~~~~l~~~~~~g~~w~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~~~vd~~~~~~~~~~~v 152 (470)
T 2ij2_A 79 RDFAGDGLFTSWTHEKNWKKAHNIL-LPSFSQQAMKGYHAMMVDIAVQLVQKWERLN-ADEHIEVPEDMTRLTLDT 152 (470)
T ss_dssp HHHHTTSGGGSCTTSHHHHHHHHHH-GGGGSTTTHHHHHHHHHHHHHHHHHHHHTCC-TTCCEEHHHHHHHHHHHH
T ss_pred HHhcCCceEEcCCCchHHHHHHHHh-ccccCHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCeEEHHHHHHHHHHHH
Confidence 1225566555 4799999999999 7999999999999999999999999997642 344678877766665544
No 14
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.85 E-value=2.8e-22 Score=162.69 Aligned_cols=146 Identities=13% Similarity=0.186 Sum_probs=116.1
Q ss_pred CCCCCCCCCC-CCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHH
Q 028387 52 HLNLPPSPPK-LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPAN 130 (210)
Q Consensus 52 ~~~~~pgp~~-~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~ 130 (210)
..+.||+|++ +|++||++++ .++++.++.++++||||||++++++.+.++++||+++++++.+++..+.+++......
T Consensus 9 g~~~PP~~~~~lP~iG~~~~~-~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~ 87 (461)
T 3ld6_A 9 GVKSPPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLT 87 (461)
T ss_dssp -CCCCCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHH
T ss_pred CCCCCCCCCCCcCeeeeHHHh-hhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhh
Confidence 3456788775 9999999998 7889999999999999999999999999999999999999988877776554321111
Q ss_pred HhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcc
Q 028387 131 ILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSS 204 (210)
Q Consensus 131 ~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~ 204 (210)
....|.+++++.+|+.|+++|+++ +++|+...++++.+.+.++++++++.|.+ .+.+++.+.+..++.
T Consensus 88 -~~~~g~~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 155 (461)
T 3ld6_A 88 -TPVFGKGVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGE----SGEKNVFEALSELII 155 (461)
T ss_dssp -HHHHCTTSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCS----EEEEEHHHHHHHHHH
T ss_pred -hccCCCccccCCCcHHHHHHHHhc-cccccHHHHhhhhHHHHHHHHHHHHHHhh----cCCccHHHHHHHHHH
Confidence 112377888888899999999999 79999999999999999999999888743 224455444444443
No 15
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.85 E-value=3e-22 Score=161.75 Aligned_cols=147 Identities=16% Similarity=0.240 Sum_probs=119.9
Q ss_pred CCCCCCCCC-CCccccccccCCCChhHHHHHHHHhhC-CcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHH
Q 028387 53 LNLPPSPPK-LPILGNLHQLLGTLPHRSLKALSERYG-PLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPAN 130 (210)
Q Consensus 53 ~~~~pgp~~-~p~lG~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~ 130 (210)
.+.||||++ +|++||++.+ ..+++.++.+|+++|| ++|++++++.+.++++||+++++++.+++..|.+++......
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~ 80 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQF-GKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMV 80 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHH-HHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGH
T ss_pred CCCCCCCCCCcchhccHHHH-ccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHH
Confidence 456888665 9999999988 6789999999999999 999999999999999999999999988877776665433322
Q ss_pred HhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHH-HHHhhcCCCCCccchhhhhhhcccc
Q 028387 131 ILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLIT-KIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 131 ~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
... |.+++++.+|+.|+++||++ +++|+.++++.+.+.+.++++++++ .|.+ .++.+|+.+.+..++.++
T Consensus 81 ~~~--g~~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~---~~~~vd~~~~~~~~~~~~ 151 (450)
T 3gw9_A 81 PVF--GEGVAYAAPYPRMREQLNFL-AEELTIAKFQNFVPAIQHEVRKFMAANWDK---DEGEINLLEDCSTMIINT 151 (450)
T ss_dssp HHH--CTTSGGGSCHHHHHHHHHHH-HHTTSGGGCTTHHHHHHHHHHHHHHHHSCS---SEEEEEHHHHHHHHHHHH
T ss_pred HHh--cCCcccCCCcHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcc---CCCcccHHHHHHHHHHHH
Confidence 222 66777776799999999999 7999999999999999999999998 6532 234577777666665544
No 16
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.84 E-value=2.6e-21 Score=157.62 Aligned_cols=149 Identities=26% Similarity=0.373 Sum_probs=113.1
Q ss_pred CCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhh
Q 028387 54 NLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILI 133 (210)
Q Consensus 54 ~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~ 133 (210)
+.||||+++|++||+..+...+++..+.+++++|||++++++++.+.++++||+++++|+.+++..|.+++.........
T Consensus 11 ~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 90 (477)
T 1r9o_A 11 KLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERAN 90 (477)
T ss_dssp BCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCTTT
T ss_pred CCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhhcc
Confidence 57899999999999998744567889999999999999999999999999999999999977766676654322111111
Q ss_pred hcCcceeecCCChhHHHHhHHHHHhhcChh--HHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccccc
Q 028387 134 YECQDISFSDYGEYWRQVRKICILQLLSVR--RVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 134 ~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t~ 207 (210)
.+.+++++ +|+.|+++||++ .+.|+.. .++.+.+.+.++++.+++.|.+.. ++.+|+.+.+..++.+++
T Consensus 91 -~~~~l~~~-~g~~w~~~Rr~~-~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~--~~~vd~~~~~~~~~~~vi 161 (477)
T 1r9o_A 91 -RGFGIVFS-NGKKWKEIRRFS-LMTLRNFGMGKRSIEDRVQEEARCLVEELRKTK--ASPCDPTFILGCAPCNVI 161 (477)
T ss_dssp -CTTSSTTC-CHHHHHHHHHHH-HHHHTTSSSCSSCHHHHHHHHHHHHHHHHHTTT--TSCBCTHHHHHHHHHHHH
T ss_pred -CCCceEec-CChHHHHHHHHH-HHHHHHhCCChHHHHHHHHHHHHHHHHHHHhcC--CCccChHHHHHHHHHHHH
Confidence 24565555 699999999999 7999887 457789999999999999997642 346888777777766554
No 17
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.84 E-value=3.5e-21 Score=155.66 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=115.0
Q ss_pred CCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhH
Q 028387 50 SNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPA 129 (210)
Q Consensus 50 ~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~ 129 (210)
.++.+.||||+++|++||+..+ ..++. ++.+++++|||++++++++.+.++++||+++++++.+++..|..+.. ...
T Consensus 8 ~~~~~~pPgp~~~P~iG~~~~~-~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~-~~~ 84 (444)
T 2ve3_A 8 LNSLPIPPGDFGLPWLGETLNF-LNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWP-LST 84 (444)
T ss_dssp -CCCCCCCCCCCBTTTBTHHHH-HHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECC-HHH
T ss_pred CCCCCCCCCCCCCCccccHHHH-hcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchh-HHH
Confidence 4566789999999999999887 44566 88899999999999998888999999999999999877655653322 122
Q ss_pred HHhhhcCc-ceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccccc
Q 028387 130 NILIYECQ-DISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 130 ~~~~~~~~-~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t~ 207 (210)
.... |. +++ ..+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+ ++.+|+.+.+..++.+++
T Consensus 85 ~~~~--g~~~l~-~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~vi 155 (444)
T 2ve3_A 85 RILL--GPNALA-TQMGEIHRSRRKIL-YQAFLPRTLDSYLPKMDGIVQGYLEQWGK----ANEVIWYPQLRRMTFDVA 155 (444)
T ss_dssp HHHH--CTTSGG-GCCHHHHHHHHHHH-HGGGCHHHHHTTHHHHHHHHHHHHHHHHH----SSEEEHHHHHHHHHHHHH
T ss_pred HHHh--Cccccc-cCCchHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhcC----CCcEeHHHHHHHHHHHHH
Confidence 2221 33 554 45699999999999 79999999999999999999999999953 346787776666665543
No 18
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.83 E-value=8.3e-21 Score=154.87 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=119.5
Q ss_pred hCCCCCCCCCCCCCCCccccccccC----CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCC
Q 028387 48 RSSNHLNLPPSPPKLPILGNLHQLL----GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNR 123 (210)
Q Consensus 48 ~~~~~~~~~pgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~ 123 (210)
+..++.+.+|||+..++. +++.+. ..+++..+.+|+++||||+++++|+.+.|+++||+++++|+.++. .|.++
T Consensus 3 r~~~pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~-~f~~r 80 (487)
T 3n9y_A 3 RSPRPFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEG-PNPER 80 (487)
T ss_dssp -CCBCGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCC-SSCCC
T ss_pred CCCCCHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCC-CCCCC
Confidence 355677889999887765 665542 236788999999999999999999999999999999999997764 67777
Q ss_pred CCChhHH---HhhhcCcceeecCCChhHHHHhHHHHHh-hcChhHHhhhHHHHHHHHHHHHHHHHhhc----CCCCCccc
Q 028387 124 PKTTPAN---ILIYECQDISFSDYGEYWRQVRKICILQ-LLSVRRVQSFQHVRNDEVSSLITKIRLSC----LHKGDFKT 195 (210)
Q Consensus 124 ~~~~~~~---~~~~~~~~~~~~~~g~~wk~~Rk~~~~~-~f~~~~l~~~~~~~~~~~~~~~~~l~~~~----~~~~~v~~ 195 (210)
+...... .....+.++ ++.+|+.|+++||++ ++ .|+.++++.+.+.+.++++++++.|.+.. +++..+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l-~~~~g~~w~~~Rr~l-~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~ 158 (487)
T 3n9y_A 81 FLIPPWVAYHQYYQRPIGV-LLKKSAAWKKDRVAL-NQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDI 158 (487)
T ss_dssp CCCHHHHHHHHHTTCCCCG-GGCCHHHHHHHHHHH-HHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECC
T ss_pred CCCcHHHHHHHHccccCCC-ccCCcHHHHHHHHhc-CcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccH
Confidence 6543221 111224444 556699999999999 68 59999999999999999999999998743 22346788
Q ss_pred hhhhhhhccccc
Q 028387 196 RNCQTSLSSGKV 207 (210)
Q Consensus 196 ~~~~~~~~~~t~ 207 (210)
...+..++.+++
T Consensus 159 ~~~~~~~t~dvi 170 (487)
T 3n9y_A 159 SDDLFRFAFESI 170 (487)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777665543
No 19
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.83 E-value=2e-21 Score=157.65 Aligned_cols=147 Identities=13% Similarity=0.186 Sum_probs=115.1
Q ss_pred CCCCCCCCC-CCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChh
Q 028387 50 SNHLNLPPS-PPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTP 128 (210)
Q Consensus 50 ~~~~~~~pg-p~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~ 128 (210)
.++.+.||| |+++|++||++.+ ..+++.++.+|+++|||++++++++.+.+++++|+++++++.++...+.+++.. .
T Consensus 7 ~~~~~~PPg~P~~lP~iG~l~~~-~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~-~ 84 (461)
T 3i3k_A 7 PAGVKSPPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVY-S 84 (461)
T ss_dssp ---CCCCCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHH-H
T ss_pred CCCCCCCCCCCCCCCccccHHhh-ccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHH-H
Confidence 345678999 8899999999998 678999999999999999999999999999999999999998876655433211 1
Q ss_pred HHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhc
Q 028387 129 ANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLS 203 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~ 203 (210)
.......|.|++++.+|+.|+++||++ .+.|+.+.++++.+.+.++++++++.|.+ .+.+|+.+.+..++
T Consensus 85 ~~~~~~~g~g~~~~~~g~~w~~~Rr~~-~~~f~~~~l~~~~~~~~~~~~~ll~~l~~----~~~~dl~~~~~~~~ 154 (461)
T 3i3k_A 85 RLTTPVFGKGVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGE----SGEKNVFEALSELI 154 (461)
T ss_dssp HHHHHHHCTTSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCS----EEEEEHHHHHHHHH
T ss_pred HhhhhhcCCeeeeCCCcHHHHHHHHHH-hhhhCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcCHHHHHHHHH
Confidence 111112367787777799999999999 79999999999999999999999988843 22356555444443
No 20
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.80 E-value=6.6e-20 Score=148.62 Aligned_cols=143 Identities=11% Similarity=0.099 Sum_probs=97.8
Q ss_pred CCCCC-CCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHh
Q 028387 54 NLPPS-PPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANIL 132 (210)
Q Consensus 54 ~~~pg-p~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~ 132 (210)
+.||| |+++|++||+..+ ..+++..+.+++++|||++++++++.+.++++||+++++++.+++..|.+++........
T Consensus 4 ~~PPg~p~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 82 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEF-RTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPI 82 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHH
T ss_pred CCCCCCCCCCCCccCHHHH-hhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhh
Confidence 56887 7789999999988 678999999999999999999999999999999999999998766566655533222222
Q ss_pred hhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 133 IYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 133 ~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
. |.++ +. +|+.|+++|+++ +++|+.++++.+.+.+.++++++++.|.+ ++.+|+.+.+..++.++
T Consensus 83 ~--g~~~-~~-~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~~~~----~~~vd~~~~~~~~~~~v 147 (455)
T 2cib_A 83 F--GEGV-VF-DASPERRKEMLH-NAALRGEQMKGHAATIEDQVRRMIADWGE----AGEIDLLDFFAELTIYT 147 (455)
T ss_dssp H--C-----------------------CCHHHHHHHHHHHHHHHHHHHTTCCS----EEEEEHHHHHHHHHHHH
T ss_pred c--CCcc-cc-CcHHHHHHHhhh-ccccCHHHHHHHHHHHHHHHHHHHHHhCC----CCcEeHHHHHHHHHHHH
Confidence 2 4444 34 599999999999 79999999999999999999999988642 23577777666665544
No 21
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.80 E-value=7.4e-21 Score=155.47 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=106.4
Q ss_pred HhCCCCCCCCCCCCC-CCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCC-CCCCCC
Q 028387 47 RRSSNHLNLPPSPPK-LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDI-VISNRP 124 (210)
Q Consensus 47 ~~~~~~~~~~pgp~~-~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~-~~~~~~ 124 (210)
..+.+..+.||||++ +|++||++.+ ..+++.++.+++++|||++++++++.++++++||+++++++.++.. .+..++
T Consensus 6 ~~~~~~~~~PPgp~~~lPliG~~~~~-~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~ 84 (491)
T 3v8d_A 6 SSRRRQTGEPPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFH 84 (491)
T ss_dssp -CCCCCTTSCCEEEEEESSTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHH
T ss_pred hhhccCCCCCCCCCCCcceeccHHHH-hcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHH
Confidence 345566778999998 6999999999 8899999999999999999999999999999999999999966542 232221
Q ss_pred CChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHH
Q 028387 125 KTTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKI 183 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l 183 (210)
..... ...|.+.+...+|+.|+++|+.+ .++|+.++++++.+.+.+++.++++.+
T Consensus 85 ~~~~~---~~~g~~~~~~~~g~~~~~~Rr~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~ 139 (491)
T 3v8d_A 85 FALSA---KAFGHRSIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPP 139 (491)
T ss_dssp HHHHH---HHHTCCCCCGGGSSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHH---HhcCCcccccccchhHHHHHHHH-HHHcCccchHHHHHHHHHHHHHHHHhh
Confidence 11111 12255555555699999999999 799999999999999999999988754
No 22
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.80 E-value=6.2e-20 Score=148.12 Aligned_cols=147 Identities=14% Similarity=0.150 Sum_probs=103.2
Q ss_pred CCCCCCCCCCCCCcccccc-ccCCCChhHHHHHHHHhhCCcEEEEe-cCccEEEEcCHHHHHHHHhhCCCCCCCCCCChh
Q 028387 51 NHLNLPPSPPKLPILGNLH-QLLGTLPHRSLKALSERYGPLMFVYF-GNSPTLVVSSAELAGEMFKTHDIVISNRPKTTP 128 (210)
Q Consensus 51 ~~~~~~pgp~~~p~lG~~~-~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~ 128 (210)
+..+.||||+++|++|++. .+ ..+++..+.++ ++|||++++++ ++.+.++++||+++++++.++ .|.+++....
T Consensus 23 ~~~~~~PGP~~~p~lG~~~~~~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~ 98 (436)
T 2cd8_A 23 RTQQGTTASPPVLDLGALGQDF-AADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNST 98 (436)
T ss_dssp -----------CCBHHHHHHHH-HHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCS
T ss_pred hhccCCCCCCccccCCCCCccc-ccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCcccccccc
Confidence 4457799999999999986 44 56789999999 89999999997 788999999999999999876 4655532101
Q ss_pred HHHh---hhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhh-hhhcc
Q 028387 129 ANIL---IYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQ-TSLSS 204 (210)
Q Consensus 129 ~~~~---~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~~~~~ 204 (210)
.... ...+.++ +..+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+. .++.+|+...+ ..++.
T Consensus 99 ~~~~~~~~~~~~~l-~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~ 174 (436)
T 2cd8_A 99 TPLTEAEAALNHNM-LESDPPRHTRLRKLV-AREFTMRRVELLRPRVQEIVDGLVDAMLAA--PDGRADLMESLAWPLPI 174 (436)
T ss_dssp SCCCTTGGGTCCSG-GGCCTTHHHHHHHHH-GGGSSHHHHHTTHHHHHHHHHHHHHHHHTC--TTSCEEHHHHTTTHHHH
T ss_pred cccccccccccccc-cccCchHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCcchHHHHHHHHHH
Confidence 1100 1124455 455699999999999 799999999999999999999999999752 23467765533 33443
Q ss_pred c
Q 028387 205 G 205 (210)
Q Consensus 205 ~ 205 (210)
+
T Consensus 175 ~ 175 (436)
T 2cd8_A 175 T 175 (436)
T ss_dssp H
T ss_pred H
Confidence 3
No 23
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.79 E-value=4.3e-20 Score=150.09 Aligned_cols=142 Identities=14% Similarity=0.200 Sum_probs=98.3
Q ss_pred CCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCC-CCCCCChhHHH
Q 028387 53 LNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVI-SNRPKTTPANI 131 (210)
Q Consensus 53 ~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~-~~~~~~~~~~~ 131 (210)
...||||+++|++||+..+ ..+++.++.++++ |||++++++++.+.++++||+++++++.++ .| .+++.......
T Consensus 22 ~eppPgP~~~P~iG~~~~~-~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~ 97 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRL-ARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEG 97 (467)
T ss_dssp CBCCEECCCCSTTHHHHHH-HHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC------------
T ss_pred CCCCCCCCCCCcccchHHh-ccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHH
Confidence 4568899999999999988 6789999999988 999999999999999999999999999876 45 33222111111
Q ss_pred hhhcC-cceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 132 LIYEC-QDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 132 ~~~~~-~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
. .| .++ +..+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+ ++.+|+...+..++.++
T Consensus 98 ~--~g~~~l-~~~dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~v 165 (467)
T 3dbg_A 98 L--LGKEGV-ATANGPLHRRQRRTI-QPAFRLDAIPAYGPIMEEEAHALTERWQP----GKTVDATSESFRVAVRV 165 (467)
T ss_dssp ---------------------CGGG-HHHHSTTTSTTTHHHHHHHHHHHHHHSCT----TSCEEHHHHHHHHHHHH
T ss_pred h--cCCCCc-ccCCcHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhcc----CCcCcHHHHHHHHHHHH
Confidence 1 24 444 555699999999999 79999999999999999999999998842 44677766655555443
No 24
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.74 E-value=4e-19 Score=141.33 Aligned_cols=138 Identities=14% Similarity=0.150 Sum_probs=110.1
Q ss_pred CCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCC-CChhHHHhhhc
Q 028387 57 PSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRP-KTTPANILIYE 135 (210)
Q Consensus 57 pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~-~~~~~~~~~~~ 135 (210)
+++..+|++||+..+ ..+++..+.+++++|||+++ ++++.+.++++||+++++++.++ .|.+++ ........ .
T Consensus 2 ~~~~~~p~iGnl~~~-~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~--~ 75 (389)
T 1n97_A 2 KRLSLREAWPYLKDL-QQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRL--T 75 (389)
T ss_dssp EECCHHHHHHHHHHH-HHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHH--H
T ss_pred cccccccccccHHHH-hhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHH--h
Confidence 345568999999988 56789999999999999999 99889999999999999999876 676554 21111112 2
Q ss_pred CcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccccc
Q 028387 136 CQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 136 ~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t~ 207 (210)
|.++++ .+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|. ++.+|+.+.+..++.+++
T Consensus 76 g~~l~~-~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~-----~~~~dl~~~~~~~~~~vi 140 (389)
T 1n97_A 76 GRGLLT-DWGESWKEARKAL-KDPFLPKNVRGYREAMEEEARAFFGEWR-----GEERDLDHEMLALSLRLL 140 (389)
T ss_dssp CSSTTT-CCHHHHHHHHHHH-CGGGSHHHHHTTHHHHHHHHHHHHHTCC-----SCCEEHHHHHHHHHHHHH
T ss_pred CCcccc-CCcHHHHHHHHHh-CcccCHHHHHHHHHHHHHHHHHHHHHcc-----CCcCcHHHHHHHHHHHHH
Confidence 556554 4699999999999 7999999999999999999999998885 346788777666665543
No 25
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.73 E-value=9.5e-18 Score=133.98 Aligned_cols=140 Identities=11% Similarity=0.071 Sum_probs=100.1
Q ss_pred CCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEec-CccEEEEcCHHHHHHHHhhCC-CCCCCCCCChh---H
Q 028387 55 LPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-NSPTLVVSSAELAGEMFKTHD-IVISNRPKTTP---A 129 (210)
Q Consensus 55 ~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~i~dp~~~~~il~~~~-~~~~~~~~~~~---~ 129 (210)
.||||+++|++|++.. +++..+.+|+ +|||++++.++ |.+.+++++++++++++.++. ..+..++.... .
T Consensus 2 ~pPGp~~~P~~g~~~~----~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~ 76 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP----EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSAS 76 (404)
T ss_dssp ----CCBSSCCCSSTT----SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHH
T ss_pred CCCCCCCCCCCCCcCC----CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCcccccc
Confidence 3899999999999764 7788888886 69999999875 667778899999999998763 22333322111 1
Q ss_pred HHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhh
Q 028387 130 NILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQT 200 (210)
Q Consensus 130 ~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 200 (210)
......+...++..+|+.|+++||++ +++|+.++++++.+.+.++++++++.|.+..+.++.+|+...+.
T Consensus 77 ~~~~~~~~~~l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~ 146 (404)
T 1jfb_A 77 GKQAAKAKPTFVDMDPPEHMHQRSMV-EPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFA 146 (404)
T ss_dssp HHHHTTSCCCGGGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTT
T ss_pred ccchhcccCcccccCchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHH
Confidence 11111122334555699999999999 79999999999999999999999999987643344567654443
No 26
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.73 E-value=1.6e-17 Score=134.40 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=104.4
Q ss_pred CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHh----h--hcCcceeecCCCh
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANIL----I--YECQDISFSDYGE 146 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~g~ 146 (210)
+..+++.+.+|+++|||++++++++.+.++++||+++++++.++ .+.+++. ..... . ..|.+++++.+|+
T Consensus 9 g~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~~--~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~g~ 84 (456)
T 3mdm_A 9 GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMST--KYNKDSK--MYRALQTVFGERLFGQGLVSECNYE 84 (456)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTCT--TSCCCHH--HHHHHHEETTEESSTTSTTTCCCHH
T ss_pred cchHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhhc--cccccch--hHHHHHHhhcccccCCCcccCCChH
Confidence 45788999999999999999999999999999999999999643 3443332 11111 1 1255666666799
Q ss_pred hHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhccccc
Q 028387 147 YWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGKV 207 (210)
Q Consensus 147 ~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t~ 207 (210)
.|+++||++ +++|+.++++++.+.+.++++.+++.|.+..+++..+|+.+.+..++.+.+
T Consensus 85 ~w~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi 144 (456)
T 3mdm_A 85 RWHKQRRVI-DLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDIL 144 (456)
T ss_dssp HHHHHHHHH-GGGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSSSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHHHHHH
Confidence 999999999 799999999999999999999999999987666667888877777665543
No 27
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.72 E-value=1e-17 Score=134.37 Aligned_cols=137 Identities=12% Similarity=0.021 Sum_probs=103.5
Q ss_pred CCccccccccCCCChhHHHHHHHHhhC-CcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhhcCccee
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYG-PLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIYECQDIS 140 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (210)
.|++||+..+ ..+++.++.+++++|| ||+++.+++.+.++++||++++.++. . ..|.+++...........|.+.+
T Consensus 8 ~P~lG~~~~~-~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~g~~~l 84 (417)
T 1izo_A 8 DKSLDNSLTL-LKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYD-T-DRFQRQNALPKRVQKSLFGVNAI 84 (417)
T ss_dssp CCCTTHHHHH-HHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHTC-T-TTEECTTCSCHHHHTTTTCTTCG
T ss_pred CCccchHHHH-hhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHhc-c-cccccccccccchhhhhccccce
Confidence 4899999988 6788999999999998 99999998899999999999986553 2 23433322111111112243344
Q ss_pred ecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 141 FSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 141 ~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
+..+|+.|+++|+++ +++|+.++++.+.+.+.+.++++++.|.+ ++.+|+.+.+..++.++
T Consensus 85 ~~~dg~~h~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~v 145 (417)
T 1izo_A 85 QGMDGSAHIHRKMLF-LSLMTPPHQKRLAELMTEEWKAAVTRWEK----ADEVVLFEEAKEILCRV 145 (417)
T ss_dssp GGCCHHHHHHHHHHH-HHTSSHHHHHHHHHHHHHHHHHHHHHHTT----SSEEEHHHHHHHHHHHH
T ss_pred eecCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHhc----CCCeeHHHHHHHHHHHH
Confidence 566799999999999 79999999999999999999999999853 34677766666655444
No 28
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.71 E-value=6.9e-18 Score=137.98 Aligned_cols=156 Identities=10% Similarity=0.054 Sum_probs=112.5
Q ss_pred hCCCCCCCCCCCCCCCccccccccC----CCChhHHHHHHHHhhCC-cEEEEecCccE-------EEEcCHHHHHHHHhh
Q 028387 48 RSSNHLNLPPSPPKLPILGNLHQLL----GTLPHRSLKALSERYGP-LMFVYFGNSPT-------LVVSSAELAGEMFKT 115 (210)
Q Consensus 48 ~~~~~~~~~pgp~~~p~lG~~~~~~----~~~~~~~~~~~~~~yG~-i~~~~~~~~~~-------v~i~dp~~~~~il~~ 115 (210)
....+.+.||||+++|++|++.++. ..+++.++.++.+|||+ ||++++++.++ +++.|++..+.++.+
T Consensus 22 ~~~~p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~ 101 (495)
T 3dsk_A 22 SKDLPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDV 101 (495)
T ss_dssp --CCCBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCT
T ss_pred CCCCCCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeeccc
Confidence 3456778899999999999997763 47899999999999999 99999998888 667777776666643
Q ss_pred CC----CCCCCCCCChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCC
Q 028387 116 HD----IVISNRPKTTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKG 191 (210)
Q Consensus 116 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (210)
.. ..+........ ..++..+...++..+|+.|+++|+++ .+.|+... +.+.+.+.++++++++.|.+...+++
T Consensus 102 ~~v~k~~~~~~~~~~~~-~l~g~~~~~~~~~~~g~~h~~~R~~~-~~~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~~~ 178 (495)
T 3dsk_A 102 DKVEKKDLLTGTYMPST-ELTGGYRILSYLDPSEPKHEKLKNLL-FFLLKSSR-NRIFPEFQATYSELFDSLEKELSLKG 178 (495)
T ss_dssp TTEECSSCTTSSSCCCG-GGGTTCCCGGGCCTTSHHHHHHHHHH-HHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccccccccccCCCCc-cccCCCcceeeeCCCchHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 21 12212211112 33322223444556799999999999 79998865 89999999999999999987543445
Q ss_pred Cccchhhhhhhcccc
Q 028387 192 DFKTRNCQTSLSSGK 206 (210)
Q Consensus 192 ~v~~~~~~~~~~~~t 206 (210)
.+|+.+....++.+.
T Consensus 179 ~vdl~~~~~~~~~~~ 193 (495)
T 3dsk_A 179 KADFGGSSDGTAFNF 193 (495)
T ss_dssp SEESHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHH
Confidence 778777666555443
No 29
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.71 E-value=1.9e-18 Score=141.00 Aligned_cols=131 Identities=11% Similarity=0.052 Sum_probs=99.5
Q ss_pred hCCCCCCCCCCCCC-CCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCC-CCCCCCC
Q 028387 48 RSSNHLNLPPSPPK-LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDI-VISNRPK 125 (210)
Q Consensus 48 ~~~~~~~~~pgp~~-~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~-~~~~~~~ 125 (210)
+.....+.||||++ +|++||++.+ ..+++..+.+|+++||++|++++++.++++++||+++++++.++.. .+.+.
T Consensus 7 ~~~~~~~~pPgp~~~~P~iG~~~~~-~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~-- 83 (491)
T 3dax_A 7 SRRRQTGEPPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKF-- 83 (491)
T ss_dssp CCCCCTTCCCEEEEEESCTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHH--
T ss_pred hhccCCCCCCcCCCcccchhhHHHH-hhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHH--
Confidence 34445567899887 8999999998 6788999999999999999999999999999999999999976542 22211
Q ss_pred ChhHHHh-hhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHH
Q 028387 126 TTPANIL-IYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIR 184 (210)
Q Consensus 126 ~~~~~~~-~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~ 184 (210)
..... ...|.+++...+|+.|+++|+.+ .+.|+.++++.+.+.+.+++.+.++...
T Consensus 84 --~~~~~~~~~g~~~~~~~~g~~w~~~r~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~ 140 (491)
T 3dax_A 84 --HFATSAKAFGHRSIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPV 140 (491)
T ss_dssp --HHHHHHHHHTCCCCCGGGTSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHcCCCcccccchhHHHHHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHhhc
Confidence 11111 11245554244589999999999 6999999999999888888887776553
No 30
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.71 E-value=3.4e-17 Score=130.95 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=104.1
Q ss_pred CCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEE----e-cC-ccEEEEcCHHHHHHHH-hhCCCCCCCCC
Q 028387 52 HLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVY----F-GN-SPTLVVSSAELAGEMF-KTHDIVISNRP 124 (210)
Q Consensus 52 ~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~----~-~~-~~~v~i~dp~~~~~il-~~~~~~~~~~~ 124 (210)
..+.||||+++|+. + ..+++..+.+| ++|||+++++ + ++ .+.++++||+++++++ .++ .+.+++
T Consensus 8 ~~~lppgp~~~p~~-----~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~ 78 (406)
T 1ued_A 8 VAPLLREPANFQLR-----T-NCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRP 78 (406)
T ss_dssp CCCEEECCTTTTCE-----E-TTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCC
T ss_pred CCCCcccCcccCCC-----C-CCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--cccccc
Confidence 35568889989886 3 56889999999 9999999999 6 78 8999999999999999 543 244443
Q ss_pred CChhHH-Hhh---hcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhh
Q 028387 125 KTTPAN-ILI---YECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQT 200 (210)
Q Consensus 125 ~~~~~~-~~~---~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 200 (210)
...... .+. ..+.++ +..+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+ .++.+|+...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l-~~~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~ 153 (406)
T 1ued_A 79 QFTQSKSGAHVEAQFVGQI-STYDPPEHTRLRKML-TPEFTVRRIRRMEPAIQSLIDDRLDLLEA---EGPSADLQGLFA 153 (406)
T ss_dssp CC---------CGGGTTCG-GGCCTTHHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHH---HCTTEEHHHHTH
T ss_pred ccccccccccccccccccc-ccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHHHH
Confidence 211110 111 023344 455799999999999 79999999999999999999999999974 234677765443
Q ss_pred h-hcccc
Q 028387 201 S-LSSGK 206 (210)
Q Consensus 201 ~-~~~~t 206 (210)
. ++.++
T Consensus 154 ~~~~~~v 160 (406)
T 1ued_A 154 DPVGAHA 160 (406)
T ss_dssp HHHHHHH
T ss_pred HHhHHHH
Confidence 2 44443
No 31
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.70 E-value=2.3e-17 Score=132.22 Aligned_cols=140 Identities=15% Similarity=0.062 Sum_probs=101.9
Q ss_pred CCCCCCCCccccccccCCCChhHHHHHHHHhh-CCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhh
Q 028387 56 PPSPPKLPILGNLHQLLGTLPHRSLKALSERY-GPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIY 134 (210)
Q Consensus 56 ~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~y-G~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~ 134 (210)
|||| |++||+..+ ..+++.++.+++++| ||++++.+++.+.+++++|++++ ++.+. ..|.+++..........
T Consensus 4 pPg~---P~iG~~~~~-~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~ 77 (415)
T 3awm_A 4 TPHT---KGPDETLSL-LADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTL 77 (415)
T ss_dssp --------CCCCHHHH-HHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTT
T ss_pred CCCC---CccchHHHH-HhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhc
Confidence 6665 899999988 678999999999999 79999999888999999999986 66544 34544332111111111
Q ss_pred cCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhcccc
Q 028387 135 ECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLSSGK 206 (210)
Q Consensus 135 ~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~t 206 (210)
.|.+.++..+|+.|+++|+++ +++|+.+.++.+.+.+.+.++++++.|.+ ++.+|+.+.+..++.++
T Consensus 78 ~g~~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~~~~----~~~vdl~~~~~~~~~~v 144 (415)
T 3awm_A 78 LGQGGVQGLDGETHRHRKQMF-MGLMTPERVRALAQLFEAEWRRAVPGWTR----KGEIVFYDELHEPLTRA 144 (415)
T ss_dssp SCSSSGGGCCHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHHH----HSEEEHHHHHHHHHHHH
T ss_pred cCCcceeecCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHhhcc----CCcEeHHHHHHHHHHHH
Confidence 243334566799999999999 79999999999999999999999999965 23567766655555443
No 32
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.65 E-value=3.1e-16 Score=125.59 Aligned_cols=138 Identities=12% Similarity=0.110 Sum_probs=99.1
Q ss_pred CCCCCCCCCCCccccccccCCCChhHHHHHHHHhh-CCcEEEEe-cCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHH
Q 028387 53 LNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERY-GPLMFVYF-GNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPAN 130 (210)
Q Consensus 53 ~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~y-G~i~~~~~-~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~ 130 (210)
.+.+|+|+++|.+..-..+ ..+++..+.+| ++| ||++++++ ++.+.++++||+++++++.++. +.+++......
T Consensus 4 ~~~~~~~~~~P~~~~~~~~-~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~ 79 (412)
T 2zbx_A 4 TATTPQTTDAPAFPSNRSC-PYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDPR--LSSNRTDDNFP 79 (412)
T ss_dssp ----CCCCSSCBSSCCCSS-TTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCTT--EECCTTSTTSC
T ss_pred CCCCCCCCCCCCCCCCchh-ccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCcc--cccCccccccc
Confidence 3457788888866333334 67889999999 788 99999997 8899999999999999997643 33332211110
Q ss_pred H-------hhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhh
Q 028387 131 I-------LIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQ 199 (210)
Q Consensus 131 ~-------~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~ 199 (210)
. ....+.++ +..+|+.|+++||++ ++.|+.++++.+.+.+.++++++++.|.+. ++.+|+...+
T Consensus 80 ~~~~~~~~~~~~~~~l-~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---g~~~d~~~~~ 150 (412)
T 2zbx_A 80 ATSPRFEAVRESPQAF-IGLDPPEHGTRRRMT-ISEFTVKRIKGMRPEVEEVVHGFLDEMLAA---GPTADLVSQF 150 (412)
T ss_dssp CCSGGGC----CCCCG-GGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHH---CSCEEHHHHT
T ss_pred cccccccccccccccc-ccCCcHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccHHHHH
Confidence 0 00013344 455799999999999 799999999999999999999999999742 3356765543
No 33
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.64 E-value=1.3e-16 Score=130.42 Aligned_cols=129 Identities=11% Similarity=0.048 Sum_probs=95.6
Q ss_pred CCCCCCCCCCCCC-CCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCCh
Q 028387 49 SSNHLNLPPSPPK-LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTT 127 (210)
Q Consensus 49 ~~~~~~~~pgp~~-~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~ 127 (210)
+.+..+.||||++ +|++||++.+ ..+++.++.+|+++|||+|++++++.++++++||+++++++.++...+..++. .
T Consensus 13 ~~~~~~~PPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~-~ 90 (498)
T 3b6h_A 13 RTRRPGEPPLDLGSIPWLGYALDF-GKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAY-A 90 (498)
T ss_dssp CCCCTTCCCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHH-H
T ss_pred hccCCCCCCCCCCCCcchhhHHHh-ccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhh-H
Confidence 3455677999988 8999999988 56789999999999999999999999999999999999999776532322221 1
Q ss_pred hHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHH
Q 028387 128 PANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIR 184 (210)
Q Consensus 128 ~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~ 184 (210)
........|.+.+ ..+|+.| |++. .++|+.+.++.+.+.+.+++...++...
T Consensus 91 ~~~~~~~~g~~~~-~~~~~~~---rr~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 142 (498)
T 3b6h_A 91 IFLMERIFDVQLP-HYSPSDE---KARM-KLTLLHRELQALTEAMYTNLHAVLLGDA 142 (498)
T ss_dssp HHHHHHTSCCCCT-TCCHHHH---HHHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcc-ccCHHHH---HHHH-HHhhchHhHHHHHHHHHHHHHHHHhhcc
Confidence 1111112245554 3446665 5677 6889999999998888888777776654
No 34
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.63 E-value=1e-15 Score=122.37 Aligned_cols=131 Identities=11% Similarity=0.090 Sum_probs=99.6
Q ss_pred CCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEe-cCcc-EEEEcCHHHHHHHHhhCCCCCCCCCCChhHH-
Q 028387 54 NLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYF-GNSP-TLVVSSAELAGEMFKTHDIVISNRPKTTPAN- 130 (210)
Q Consensus 54 ~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~-~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~- 130 (210)
+.+|+|+.+|+.++ . ..+++.++.+++ +|||++++++ ++.+ .++++||+++++++.+ ..|.+++......
T Consensus 8 ~~~~~~~~~p~~~~---~-~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~ 80 (406)
T 1s1f_A 8 QAVPPVRDWPAVDL---P-GSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQVT 80 (406)
T ss_dssp CCSCCEEECCCCCC---C-TTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTBC
T ss_pred hhccCCCCCCCCcc---c-ccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCcc
Confidence 56778887888766 2 568889999986 7999999996 6666 9999999999999976 3565554321110
Q ss_pred ---H-hhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccch
Q 028387 131 ---I-LIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTR 196 (210)
Q Consensus 131 ---~-~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~ 196 (210)
. ....+.++++ .+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+. ++.+|+.
T Consensus 81 ~~~~~~~~~~~~l~~-~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~~~~d~~ 145 (406)
T 1s1f_A 81 RLAPHFIPARGAVGF-LDPPDHTRLRRSV-AAAFTARGVERVRERSRGMLDELVDAMLRA---GPPADLT 145 (406)
T ss_dssp BSSSSCSSCTTSGGG-CCTTHHHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHHHH---CSSEEHH
T ss_pred ccccccccccccccc-CCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccHH
Confidence 0 1112455544 5699999999999 799999999999999999999999999751 3356764
No 35
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.63 E-value=3.2e-17 Score=133.24 Aligned_cols=128 Identities=13% Similarity=0.140 Sum_probs=97.4
Q ss_pred CCCCCCCCCCCCC-CCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCCh
Q 028387 49 SSNHLNLPPSPPK-LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTT 127 (210)
Q Consensus 49 ~~~~~~~~pgp~~-~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~ 127 (210)
+.+..+.||||++ +|++||++.+ ..+++..+.+|+++|||++++++++.++++++||+++++++.++.. +..++.
T Consensus 13 ~~~~~~~pPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~-- 88 (475)
T 3b98_A 13 RTRRRNEPPLDKGMIPWLGHALEF-GKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSY-- 88 (475)
T ss_dssp CCCCTTCCCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHH--
T ss_pred cccCCCCCCCCCCCcchHHhHHHH-hhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHH--
Confidence 3455677999998 9999999988 6689999999999999999999999999999999999999976542 222111
Q ss_pred hHHHhh-hcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHh
Q 028387 128 PANILI-YECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRL 185 (210)
Q Consensus 128 ~~~~~~-~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~ 185 (210)
...... ..|.+.+ ..+|+.| |+++ .++|+.++++.+.+.+.+++.++++.+..
T Consensus 89 ~~~~~~~~~g~~~~-~~~~~~~---R~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~~ 142 (475)
T 3b98_A 89 AQVLMKRIFNMILP-SHNPESE---KKRA-EMHFQGASLTQLSNSMQNNLRLLMTPSEM 142 (475)
T ss_dssp HHHHHHHTTCCCCT-TCCHHHH---HHHH-HHHTSHHHHHHHHHHHHHHHHHHSSTTTT
T ss_pred HHHHHHHHhCCCCC-CCChHHH---HHHH-HHHcChhhHHHHHHHHHHHHHHHHhhccc
Confidence 111111 2244554 3446654 6788 68999999999999999999988877643
No 36
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.62 E-value=3.3e-16 Score=127.19 Aligned_cols=154 Identities=10% Similarity=0.067 Sum_probs=106.7
Q ss_pred CCCCCCCCCCCCCCccccccccC----CC-ChhHHHHHHHHhhCC-cEEEEecCc-------cEEEEcCHHHHHHHHhh-
Q 028387 50 SNHLNLPPSPPKLPILGNLHQLL----GT-LPHRSLKALSERYGP-LMFVYFGNS-------PTLVVSSAELAGEMFKT- 115 (210)
Q Consensus 50 ~~~~~~~pgp~~~p~lG~~~~~~----~~-~~~~~~~~~~~~yG~-i~~~~~~~~-------~~v~i~dp~~~~~il~~- 115 (210)
..+.+.+|||.++|++|++.++. .. +++.++.+++++||+ ||++++++. ..+++.|++..+.++..
T Consensus 5 ~~Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~ 84 (473)
T 3dan_A 5 SKPLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVS 84 (473)
T ss_dssp GSCBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTT
T ss_pred CCCCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCc
Confidence 35677899999999999998752 34 789999999999999 999998744 34444555544444421
Q ss_pred ---CCCCCCCCCCChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCC
Q 028387 116 ---HDIVISNRPKTTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGD 192 (210)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (210)
+...+.+.... .....+......++..+|+.|+++|+++ .+.|+.+ ++.+.+.+.++++++++.|.+...+++.
T Consensus 85 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~h~~~R~~~-~~~f~~~-~~~~~~~i~~~~~~ll~~~~~~~~~~~~ 161 (473)
T 3dan_A 85 KVEKKDLFTGTYMP-STKLTGGYRVLSYLDPSEPRHAQLKNLL-FFMLKNS-SNRVIPQFETTYTELFEGLEAELAKNGK 161 (473)
T ss_dssp TEECSSCTTSSSCC-CGGGGTTSCCGGGCCTTSHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ceeccccccccccC-CccccCCCcceeeeCCCcHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 11122222111 1122221123344566799999999999 7999994 8999999999999999999865444457
Q ss_pred ccchhhhhhhcccc
Q 028387 193 FKTRNCQTSLSSGK 206 (210)
Q Consensus 193 v~~~~~~~~~~~~t 206 (210)
+|+.+.+..++.++
T Consensus 162 vdl~~~~~~~~~~~ 175 (473)
T 3dan_A 162 AAFNDVGEQAAFRF 175 (473)
T ss_dssp EECHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 78877766665443
No 37
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.60 E-value=3e-15 Score=119.73 Aligned_cols=119 Identities=9% Similarity=0.054 Sum_probs=89.7
Q ss_pred CCChhHHHHHHHHhhCCcEEEEe-cCccEEEEcCHHHHHHHHhhCCCCCCCCCC---Chh---HHHh-hhcCcceeecCC
Q 028387 73 GTLPHRSLKALSERYGPLMFVYF-GNSPTLVVSSAELAGEMFKTHDIVISNRPK---TTP---ANIL-IYECQDISFSDY 144 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~dp~~~~~il~~~~~~~~~~~~---~~~---~~~~-~~~~~~~~~~~~ 144 (210)
..+++..+.+| ++|||++++++ ++.+.++++||+++++++.++. +.+++. ... .... ...+.++ +..+
T Consensus 23 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 98 (408)
T 3abb_A 23 PYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDPR--LSSDWGHPDFPVVVRRTEDRGGLAFPL-IGVD 98 (408)
T ss_dssp TTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCTT--EECCTTSTTCCCCC---------CCTT-TTCC
T ss_pred ccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCCC--cccccccccccccccCCcccccccccc-ccCC
Confidence 56889999999 89999999997 8899999999999999997643 333321 000 0100 0012344 4557
Q ss_pred ChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhh
Q 028387 145 GEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQ 199 (210)
Q Consensus 145 g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~ 199 (210)
|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+ .++.+|+...+
T Consensus 99 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~ 149 (408)
T 3abb_A 99 DPVHARQRRML-IPSFGVKRMNAIRPRLQSLVDRLLDDMLA---KGPGADLVSAF 149 (408)
T ss_dssp TTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---TCSCEEHHHHT
T ss_pred chHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeehHHHH
Confidence 99999999999 79999999999999999999999999974 23456765543
No 38
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.58 E-value=4.5e-15 Score=119.57 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=95.5
Q ss_pred CCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEE--------ecCccEEEEcCHHHHHHHHhhCCCCCCCCCC
Q 028387 54 NLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVY--------FGNSPTLVVSSAELAGEMFKTHDIVISNRPK 125 (210)
Q Consensus 54 ~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~--------~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~ 125 (210)
..||+|..++++.....- ..+++..+.++ ++||||+++. +|+.+.+++++|+++++++++. ..|.+++.
T Consensus 18 ~~p~~~~~~~~~~~~~~~-~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~-~~fs~~~~ 94 (433)
T 3ivy_A 18 PSPNLPPGFDFTDPAIYA-ERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHS-DVFSSYEN 94 (433)
T ss_dssp --CCCCTTCCTTCHHHHT-TCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCT-TTEESTTT
T ss_pred CCCCCCCCCCCCCHHHhh-cCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcCh-hhccCCcc
Confidence 446666667766654433 45799999999 7899999998 4457999999999999999654 45655543
Q ss_pred ChhH--------HHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHh
Q 028387 126 TTPA--------NILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRL 185 (210)
Q Consensus 126 ~~~~--------~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~ 185 (210)
.... ......+.++ +..+|+.|+++||++ +++|+.+.++.+.+.+.++++++++.|.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l-~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~ 160 (433)
T 3ivy_A 95 GVIPRFKNDIAREDIEVQRFVM-LNMDAPHHTRLRKII-SRGFTPRAVGRLHDELQERAQKIAAEAAA 160 (433)
T ss_dssp CSCCCCCTTCCHHHHHGGGGSG-GGCCTTHHHHHHHHH-GGGSCHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccCCc-cccChHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2211 1112223444 456699999999999 79999999999999999999999999974
No 39
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.58 E-value=4.5e-15 Score=117.68 Aligned_cols=121 Identities=11% Similarity=0.030 Sum_probs=93.0
Q ss_pred CCChhHHHHHHHHhhCCcEEEEecC----ccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhhcCcceeecCCChhH
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFGN----SPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIYECQDISFSDYGEYW 148 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~~----~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w 148 (210)
..+++..+.+++ +||||+++++++ .+.++++||+++++++++ ...|.+++....... ...+.+.++..+|+.|
T Consensus 11 ~~~p~~~~~~lr-~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl~~-~~~f~~~~~~~~~~~-~~~~~~~~~~~~g~~~ 87 (384)
T 3oo3_A 11 RLDPVPEFEELQ-KAGPLHEYDTEPGMDGRKQWLVTGHDEVRAILAD-HERFSSMRPVDDEAD-RALLPGILQAYDPPDH 87 (384)
T ss_dssp TTEECHHHHHHH-HTCSEECCCCC------CEEEECCHHHHHHHHHC-TTTEECSCCCC------CCCTTCGGGCCTTHH
T ss_pred ccChhHHHHHHH-hcCCeeecccccccCCCCEEEEcCHHHHHHHHhC-chhccCCcccccccc-ccccccccccCCChhH
Confidence 578999999994 999999999876 899999999999999944 456777664332222 1223445566679999
Q ss_pred HHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhh
Q 028387 149 RQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQT 200 (210)
Q Consensus 149 k~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 200 (210)
+++||++ +++|+.++++.+.+.+.++++++++.|.+ .++.+|+...+.
T Consensus 88 ~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~ 135 (384)
T 3oo3_A 88 TRLRRTV-APAYSARRMERLRPRIEEIVEECLDDFES---VGAPVDFVRHAA 135 (384)
T ss_dssp HHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---SCSSEEHHHHTT
T ss_pred HHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 9999999 79999999999999999999999999975 234567655443
No 40
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.57 E-value=2.9e-15 Score=119.91 Aligned_cols=134 Identities=15% Similarity=0.096 Sum_probs=94.6
Q ss_pred HhCCCCCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCC
Q 028387 47 RRSSNHLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKT 126 (210)
Q Consensus 47 ~~~~~~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~ 126 (210)
++..++.+.+|||+. ..+++..+.++++ |||| +.++.+.++++||+++++++.++. .|.+++..
T Consensus 12 r~~~~pl~~~PGp~~-----------~~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~~-~f~~~~~~ 75 (411)
T 2jjn_A 12 RRTLTTIDEVPGMAD-----------ETALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDTA-TFSSDPTR 75 (411)
T ss_dssp -----CCCSCCCSSC-----------HHHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCTT-TEESCGGG
T ss_pred hcccCCCCCCCCccc-----------ccChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCcc-cccCcccc
Confidence 345577888999871 2578889999986 9998 666788999999999999997653 57665432
Q ss_pred hhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccch-hhhhhhccc
Q 028387 127 TPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTR-NCQTSLSSG 205 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~~~~~~ 205 (210)
.. ......+.++ +..+|+.|+++||++ +++|+.++++.+.+.+.++++++++. + ++.+|+. +....++.+
T Consensus 76 ~~-~~~~~~~~~~-~~~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~-----~-~~~~d~~~~~~~~~~~~ 146 (411)
T 2jjn_A 76 VI-EGASPTPGMI-HEIDPPEHRALRKVV-SSAFTPRTISDLEPRIRDVTRSLLAD-----A-GESFDLVDVLAFPLPVT 146 (411)
T ss_dssp GS-TTCCCCTTCG-GGCCTTHHHHHHHHH-HHHSCHHHHHTTHHHHHHHHHHHHHT-----S-CSEEEHHHHTTTHHHHH
T ss_pred cC-Cccccccccc-ccCCchHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHhc-----C-CCceeHHHHHHHHHHHH
Confidence 11 1111123444 455699999999999 79999999999999999999999987 1 2356665 333344433
No 41
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.56 E-value=5.3e-15 Score=118.97 Aligned_cols=143 Identities=12% Similarity=0.080 Sum_probs=102.8
Q ss_pred CCCCCCCCCCCCccccccccC---C-CChhHHHHHHHHhhCCcEEEEe-cCccEEEEcCHHHHHHHHhhCCCCCCCCCC-
Q 028387 52 HLNLPPSPPKLPILGNLHQLL---G-TLPHRSLKALSERYGPLMFVYF-GNSPTLVVSSAELAGEMFKTHDIVISNRPK- 125 (210)
Q Consensus 52 ~~~~~pgp~~~p~lG~~~~~~---~-~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~dp~~~~~il~~~~~~~~~~~~- 125 (210)
+.+.||| ++|++.... . .+++..+.++++ |||++++++ |+.+.+++++++++++++++. ..|.+++.
T Consensus 4 ~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~~ 76 (428)
T 1cpt_A 4 RATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEGS 76 (428)
T ss_dssp TCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSSC
T ss_pred ccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCcccc
Confidence 4456777 888765541 1 357888988876 799999998 678999999999999999764 35766654
Q ss_pred ChhH---H---H---hh---hcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCc
Q 028387 126 TTPA---N---I---LI---YECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDF 193 (210)
Q Consensus 126 ~~~~---~---~---~~---~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v 193 (210)
.... . . .+ ..+.++ +..+|+.|+++||++ +++|+.++++++.+.+.++++++++.|.+. ++.+
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~~~l-~~~~g~~~~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~~~~ 151 (428)
T 1cpt_A 77 EILYDQNNEAFMRSISGGCPHVIDSL-TSMDPPTHTAYRGLT-LNWFQPASIRKLEENIRRIAQASVQRLLDF---DGEC 151 (428)
T ss_dssp SSCCCHHHHHHHHHHTTTSSCSSCCG-GGCCTTHHHHHHHHH-HTTSSHHHHGGGHHHHHHHHHHHHHHHHTS---SSEE
T ss_pred ccCCcccccchhcccccccccccccc-ccCChHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHHh---CCCe
Confidence 2211 1 1 21 012344 455699999999999 799999999999999999999999999753 2356
Q ss_pred cch-hhhhhhcccc
Q 028387 194 KTR-NCQTSLSSGK 206 (210)
Q Consensus 194 ~~~-~~~~~~~~~t 206 (210)
|+. ++...++.++
T Consensus 152 d~~~~~~~~~~~~v 165 (428)
T 1cpt_A 152 DFMTDCALYYPLHV 165 (428)
T ss_dssp EHHHHTTTTHHHHH
T ss_pred ehHHHHHhhhHHHH
Confidence 764 3334444433
No 42
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.56 E-value=8.5e-15 Score=116.91 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=89.8
Q ss_pred CCChhHHHHHHHHhhCCcEEEEe-cCccEEEEcCHHHHHHHHhhCCCCCCCCCC--C-hhHHHhhh--cCcceeecCCCh
Q 028387 73 GTLPHRSLKALSERYGPLMFVYF-GNSPTLVVSSAELAGEMFKTHDIVISNRPK--T-TPANILIY--ECQDISFSDYGE 146 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~dp~~~~~il~~~~~~~~~~~~--~-~~~~~~~~--~~~~~~~~~~g~ 146 (210)
..+++..+.+| ++|||++++++ ++.+.++++||+++++++.++ .|.+++. . ........ .+.++ +..+|+
T Consensus 18 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~ 93 (403)
T 3aba_A 18 PFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSL-LWQDEP 93 (403)
T ss_dssp TTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCC-TTCCTT
T ss_pred ccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccc-ccCCch
Confidence 56788889999 89999999997 889999999999999999764 3555431 0 10000111 24454 455699
Q ss_pred hHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccch
Q 028387 147 YWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTR 196 (210)
Q Consensus 147 ~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~ 196 (210)
.|+++||++ +++|+.++++.+.+.+.++++++++.|.+ .++.+|+.
T Consensus 94 ~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~~d~~ 139 (403)
T 3aba_A 94 EHTSDRKLL-AKEFTVRRMQALRPNIQRIVDEHLDAIEA---RGGPVDLV 139 (403)
T ss_dssp HHHHHHHHH-HHHSCHHHHHTTHHHHHHHHHHHHHHHHH---HCSCEEHH
T ss_pred hHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHH
Confidence 999999999 79999999999999999999999999985 13456765
No 43
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.56 E-value=1.7e-14 Score=115.57 Aligned_cols=145 Identities=15% Similarity=0.146 Sum_probs=102.3
Q ss_pred CCCCCCCCCCCCCCcc--ccccccC----CCChhHHHHHHHHhhC--CcEEEEecCccEEEEcCHHHHHHHHhhCCCCCC
Q 028387 50 SNHLNLPPSPPKLPIL--GNLHQLL----GTLPHRSLKALSERYG--PLMFVYFGNSPTLVVSSAELAGEMFKTHDIVIS 121 (210)
Q Consensus 50 ~~~~~~~pgp~~~p~l--G~~~~~~----~~~~~~~~~~~~~~yG--~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~ 121 (210)
.++.+.||||++.|.. +.+-.+. ..+++..+.+|+ +|| |+++++..+ +.++++||+++++++.+. ..|.
T Consensus 7 ~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g-~~vvv~~~~~v~~vl~~~-~~f~ 83 (415)
T 2zwu_A 7 QSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG-GHWIATRGQLIREAYEDY-RHFS 83 (415)
T ss_dssp ----CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG-CEEEECSHHHHHHHHHCT-TTEE
T ss_pred cCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC-CeEEEcCHHHHHHHHcCc-cccC
Confidence 4556778999988864 4332211 347889999995 799 999998333 799999999999999653 4676
Q ss_pred CCC-CChhHHHhhhcCcc-eeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchh-h
Q 028387 122 NRP-KTTPANILIYECQD-ISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRN-C 198 (210)
Q Consensus 122 ~~~-~~~~~~~~~~~~~~-~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~ 198 (210)
+++ ...... ...+.+ ++ ..+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+. +.+|+.. +
T Consensus 84 ~~~~~~~~~~--~~~~~~~l~-~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~----~~~d~~~~~ 155 (415)
T 2zwu_A 84 SECPFIPREA--GEAYDFIPT-SMDPPEQRQFRALA-NQVVGMPVVDKLENRIQELACSLIESLRPQ----GQCNFTEDY 155 (415)
T ss_dssp TTSCSSSHHH--HHHCCCTTT-TCCTTTTHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHGGG----TEEEHHHHT
T ss_pred CCcccCCCCc--cccccccCc-cCCCcHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhc----CCccHHHHH
Confidence 665 222211 111445 54 44699999999999 799999999999999999999999999752 2566654 3
Q ss_pred hhhhccc
Q 028387 199 QTSLSSG 205 (210)
Q Consensus 199 ~~~~~~~ 205 (210)
...++.+
T Consensus 156 ~~~~~~~ 162 (415)
T 2zwu_A 156 AEPFPIR 162 (415)
T ss_dssp TTHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 44
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.55 E-value=7.3e-15 Score=117.47 Aligned_cols=127 Identities=19% Similarity=0.323 Sum_probs=94.6
Q ss_pred CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCC--ChhH-HH------hhh-cCcceeec
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPK--TTPA-NI------LIY-ECQDISFS 142 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~--~~~~-~~------~~~-~~~~~~~~ 142 (210)
..+++..+.+| ++|||++++++++.+.++++||+++++++.++. +.+++. .... .. ... .+.++ +.
T Consensus 14 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 89 (408)
T 1odo_A 14 GADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENM-FT 89 (408)
T ss_dssp CTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSG-GG
T ss_pred cCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--cccccccccccccccccccccccccccccc-cc
Confidence 57899999999 999999999998899999999999999997653 322221 0000 00 000 13444 55
Q ss_pred CCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhh-hhccc
Q 028387 143 DYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQT-SLSSG 205 (210)
Q Consensus 143 ~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-~~~~~ 205 (210)
.+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+.. .++.+|+...+. .++.+
T Consensus 90 ~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~~~~d~~~~~~~~~~~~ 151 (408)
T 1odo_A 90 AYGPNHRKLRRLV-APAFSARRVDAMRPAVEAMVTGLVDRLAELP-AGEPVDLRQELAYPLPIA 151 (408)
T ss_dssp CCHHHHHHHHHTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHSC-TTSCEEHHHHTTTHHHHH
T ss_pred cCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCcchHHHHhhhhHHH
Confidence 6699999999999 7999999999999999999999999998642 244677765443 24443
No 45
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.53 E-value=3.2e-14 Score=113.98 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=95.4
Q ss_pred CCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEe-cCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhH-
Q 028387 52 HLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYF-GNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPA- 129 (210)
Q Consensus 52 ~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~- 129 (210)
.....+||.. |+- ..+ ..+++..+.+|+ +|||++++++ ++.+.++++||+++++++.++ .|.+++.....
T Consensus 5 ~~~~~~g~~~-~~~---~~~-~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~ 76 (413)
T 2z36_A 5 VADELAGLEL-PVE---RGC-PFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFP 76 (413)
T ss_dssp -----CCCEE-CCC---CCB-TTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCC
T ss_pred HHHHhccccC-CCC---ccc-ccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCcc
Confidence 3445667653 331 233 568899999997 7899999997 789999999999999999863 46555422110
Q ss_pred -----HHhh---hcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccch
Q 028387 130 -----NILI---YECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTR 196 (210)
Q Consensus 130 -----~~~~---~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~ 196 (210)
.... ..+.+.++..+|+.|+++||++ +++|+.++++++.+.+.++++++++.|.+. .++.+|+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--~~~~~d~~ 148 (413)
T 2z36_A 77 LFTLDAATLQQLRSQPPLMLGMDGAEHSAARRPV-IGEFTVKRLAALRPRIQDIVDHFIDDMLAT--DQRPVDLV 148 (413)
T ss_dssp CSSCCHHHHHHHTTSCCCGGGCCHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTTC--SCSSEEHH
T ss_pred ccccccccccccccccccccccCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccHH
Confidence 1110 0245623455699999999999 799999999999999999999999999642 24467765
No 46
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.52 E-value=2.3e-14 Score=114.41 Aligned_cols=124 Identities=17% Similarity=0.171 Sum_probs=94.1
Q ss_pred CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCC--h-----h-----H-HHh-hhcCcc
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKT--T-----P-----A-NIL-IYECQD 138 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~--~-----~-----~-~~~-~~~~~~ 138 (210)
..+++..+.+| ++|||++++++++.+.++++||+++++++.++ .|.+++.. . . . ... ...+.+
T Consensus 13 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (404)
T 1z8o_A 13 HVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFATN 89 (404)
T ss_dssp TSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSSS
T ss_pred ccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhcccc
Confidence 56899999999 89999999999999999999999999999876 46555432 1 0 0 110 012455
Q ss_pred eeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchh-hhhhhccc
Q 028387 139 ISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRN-CQTSLSSG 205 (210)
Q Consensus 139 ~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~~~~~~ 205 (210)
++ ..+|+.|+++||++ +++|+.+.++.+.+.+.++++++++.|.+ ++.+|+.. +...++.+
T Consensus 90 l~-~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~ 151 (404)
T 1z8o_A 90 MG-TSDPPTHTRLRKLV-SQEFTVRRVEAMRPRVEQITAELLDEVGD----SGVVDIVDRFAHPLPIK 151 (404)
T ss_dssp GG-GCCTTHHHHHHHHH-HTTSCHHHHHHTHHHHHHHHHHHHHTSCS----SSEEEHHHHTTTHHHHH
T ss_pred cc-cCCCcHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhhhh----cCCcchHHHHhHHHHHH
Confidence 54 45699999999999 79999999999999999999999998853 34567653 33344433
No 47
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.52 E-value=4.7e-14 Score=112.55 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=90.1
Q ss_pred CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChh----HHHhhhcCcceeecCCChhH
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTP----ANILIYECQDISFSDYGEYW 148 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~w 148 (210)
..+++..+.++ ++|||++++++++.+.++++||+++++++.++ ..|.+++.... .......+.++ +..+|+.|
T Consensus 12 ~~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~~h 88 (404)
T 3ejb_B 12 LKNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMM-LFQNQPDH 88 (404)
T ss_dssp HHCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSG-GGCCTTHH
T ss_pred ccCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcch-hhcCCchH
Confidence 35788899888 58999999999999999999999999999876 45666553111 11111224455 45569999
Q ss_pred HHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccc
Q 028387 149 RQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKT 195 (210)
Q Consensus 149 k~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~ 195 (210)
+++||++ +++|+.++++.+.+.+.++++++++.|.+ ++.+|+
T Consensus 89 ~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~ 130 (404)
T 3ejb_B 89 RRLRTLA-SGAFTPRTTESYQPYIIETVHHLLDQVQG----KKKMEV 130 (404)
T ss_dssp HHHHHHH-HGGGSHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEH
T ss_pred HHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcch
Confidence 9999999 79999999999999999999999998853 334564
No 48
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.52 E-value=2.4e-14 Score=114.56 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=94.2
Q ss_pred CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhH---H-Hhhh-cCcceeecCCChh
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPA---N-ILIY-ECQDISFSDYGEY 147 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~---~-~~~~-~~~~~~~~~~g~~ 147 (210)
..+++..+.+| ++|||++++++++.+.++++||+++++++.++. |.+++..... . .... .+.++ +..+|+.
T Consensus 19 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~~ 94 (411)
T 3a4g_A 19 WQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMM-ILMDPPD 94 (411)
T ss_dssp TTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCG-GGCCTTH
T ss_pred hcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCccccccc-ccCCchH
Confidence 56889999999 899999999999999999999999999997653 6555431100 0 0111 24455 4556999
Q ss_pred HHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccch-hhhhhhccc
Q 028387 148 WRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTR-NCQTSLSSG 205 (210)
Q Consensus 148 wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~~~~~~ 205 (210)
|+++||++ +++|+.++++.+.+.+.++++++++.|.+ ++.+|+. ++...++.+
T Consensus 95 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~~ 148 (411)
T 3a4g_A 95 HTRLRKLV-GRSFTVRRMNELEPRITEIADGLLAGLPT----DGPVDLMREYAFQIPVQ 148 (411)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHSCS----SSCEEHHHHTTTTHHHH
T ss_pred HHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHh----cCCccHHHHHHHHhHHH
Confidence 99999999 79999999999999999999999999853 2356764 443444443
No 49
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.52 E-value=3.4e-14 Score=113.90 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=93.8
Q ss_pred CCChhHHHHHHHHhhCCcEEEEec-CccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhh-------hcCcceeecCC
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFG-NSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILI-------YECQDISFSDY 144 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 144 (210)
..+++..+.+|+++ ||+++++++ |.+.++++||+++++++.++ .|.+++......... ..+.++ +..+
T Consensus 28 ~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~d 103 (417)
T 3tyw_A 28 PFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPF-IRTD 103 (417)
T ss_dssp TTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCG-GGCC
T ss_pred ccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccch-hhcC
Confidence 57899999999988 999999987 58999999999999999876 454432111111100 123444 5556
Q ss_pred ChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhh-hhhcc
Q 028387 145 GEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQ-TSLSS 204 (210)
Q Consensus 145 g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~~~~~ 204 (210)
|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+ .++.+|+...+ ..++.
T Consensus 104 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~ 160 (417)
T 3tyw_A 104 APEHTRYRRML-LPAFTVRRVRAMRPAVQARVDEILDGMLA---AGGPVDLVSAYANAVST 160 (417)
T ss_dssp HHHHHHHHHHH-GGGGCHHHHHHTHHHHHHHHHHHHHHHHH---HCSSEEHHHHTHHHHHH
T ss_pred CcHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHh---hCCCcchHHHHHHHHHH
Confidence 99999999999 79999999999999999999999999986 23356765544 34443
No 50
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.50 E-value=2.9e-14 Score=114.31 Aligned_cols=117 Identities=11% Similarity=0.064 Sum_probs=89.6
Q ss_pred CCChhHHHHHHHHhhCCcEEEEe-cCccEEEEcCHHHHHHHHhhCCCCCCCCCCC-hhHHHhhh--cCcceeecCCChhH
Q 028387 73 GTLPHRSLKALSERYGPLMFVYF-GNSPTLVVSSAELAGEMFKTHDIVISNRPKT-TPANILIY--ECQDISFSDYGEYW 148 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~g~~w 148 (210)
..+++..+.+| ++|||++++++ ++.+.++++||+++++++.++ .|.+++.. .....+.. .+.++ +..+|+.|
T Consensus 36 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l-~~~dg~~h 111 (417)
T 2y5n_A 36 GLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGL-LSMDPPEH 111 (417)
T ss_dssp SCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSG-GGCCTTHH
T ss_pred ccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccC-ccCCchHH
Confidence 56889999999 89999999997 899999999999999999764 35444321 10000111 24455 45569999
Q ss_pred HHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 028387 149 RQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRN 197 (210)
Q Consensus 149 k~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~ 197 (210)
+++||++ ++.|+.++++.+.+.+.++++++++.|.+ ++..+|+..
T Consensus 112 ~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~vdl~~ 156 (417)
T 2y5n_A 112 SRLRRLV-VKAFTARRAESLRPRAREIAHELVDQMAA---TGQPADLVA 156 (417)
T ss_dssp HHHHHHH-HHHSCHHHHHHTHHHHHHHHHHHHHHHHH---HCSSEEHHH
T ss_pred HHHHHHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeeHHH
Confidence 9999999 79999999999999999999999999974 121566653
No 51
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.50 E-value=6.2e-14 Score=112.00 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=93.6
Q ss_pred CCChhHHHHHHHHhhCCcEEEEe-cCccEEEEcCHHHHHHHHhhCCCCCCCCCCChh-HHHhhhcCcce-eecCCC----
Q 028387 73 GTLPHRSLKALSERYGPLMFVYF-GNSPTLVVSSAELAGEMFKTHDIVISNRPKTTP-ANILIYECQDI-SFSDYG---- 145 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~g---- 145 (210)
..+++.++.++ ++|||++++++ ++.+.++++||+++++++.++ .|.+++.... .... ..+.+. ++..+|
T Consensus 25 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~-~~~~~~~l~~~~g~~~~ 100 (404)
T 2xbk_A 25 MLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQY-VRSPFLDLLISDADAES 100 (404)
T ss_dssp TTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCS-SCCHHHHTTCBCSCHHH
T ss_pred ccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCcc-cccccccceeeCCCCCC
Confidence 46788999999 89999999997 789999999999999999764 3555443211 0111 113441 445569
Q ss_pred --hhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchh-hhhhhccc
Q 028387 146 --EYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRN-CQTSLSSG 205 (210)
Q Consensus 146 --~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~~~~~~ 205 (210)
+.|+++||++ +++|+.++++++.+.+.++++++++.|.+ .++.+|+.. +...++.+
T Consensus 101 ~~~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~g~~~d~~~~~~~~~~~~ 159 (404)
T 2xbk_A 101 GRRQHAETRRLL-TPLFSARRVLEMQPKVEEAADTLLDAFIA---QGPPGDLHGELTVPFALT 159 (404)
T ss_dssp HHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---TCSSEEHHHHTHHHHHHH
T ss_pred CCchHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHHHHHHHHHH
Confidence 9999999999 79999999999999999999999999974 234677653 33334433
No 52
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.49 E-value=7e-14 Score=112.71 Aligned_cols=128 Identities=10% Similarity=0.052 Sum_probs=95.1
Q ss_pred CChhHHHHHHHHhhCCcEEEEec-------CccEEEEcCHHHHHHHHhhCCCCCCCCCCC--h-hHHHhhhcCcceeecC
Q 028387 74 TLPHRSLKALSERYGPLMFVYFG-------NSPTLVVSSAELAGEMFKTHDIVISNRPKT--T-PANILIYECQDISFSD 143 (210)
Q Consensus 74 ~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~dp~~~~~il~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~ 143 (210)
.+++..+.+|+ +||||+++.++ +.+.++++||+++++++.++ ..|.+++.. . ....+...+.++++.
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~- 120 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIVL- 120 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGGC-
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccccccC-
Confidence 46788899996 69999999886 67899999999999999875 357666521 1 111121114455554
Q ss_pred CChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchh-hhhhhcccc
Q 028387 144 YGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRN-CQTSLSSGK 206 (210)
Q Consensus 144 ~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~~~~~~t 206 (210)
+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+.. ++..+|+.. +...++.++
T Consensus 121 dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~-~~~~vd~~~~~~~~~~~~v 182 (435)
T 2wm5_A 121 DDPRHQRLRSIV-SRAFTPKVVARIEAAVRDRAHRLVSSMIANN-PDRQADLVSELAGPLPLQI 182 (435)
T ss_dssp CTTHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEHHHHTTTHHHHHH
T ss_pred CcHHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcEehHHHHHHHHHHHH
Confidence 699999999999 7999999999999999999999999998742 233567654 334454443
No 53
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.49 E-value=3.1e-14 Score=113.41 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=86.8
Q ss_pred CCChhHHHHHHHHhh--CCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhhcCcceeecCCChhHHH
Q 028387 73 GTLPHRSLKALSERY--GPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIYECQDISFSDYGEYWRQ 150 (210)
Q Consensus 73 ~~~~~~~~~~~~~~y--G~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~ 150 (210)
..+++.++.+|+++| ||++++++++ +.++++||++++++++ +...|.+++....... ...+...++..+|+.|++
T Consensus 18 ~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~ 94 (398)
T 4fb2_A 18 DGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVIQ-NTKAFSNKGVTFPRYE-TGEFELMMAGQDDPVHKK 94 (398)
T ss_dssp TSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHHT-CCSSEEGGGCSSSCC-----CCCTTTTCCTTHHHH
T ss_pred hcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHHh-ChhhccCCcccccCCC-CcccccCcccCCchHHHH
Confidence 578999999999999 9999999875 6999999999999994 4446766554322111 111333446667999999
Q ss_pred HhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHh
Q 028387 151 VRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRL 185 (210)
Q Consensus 151 ~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~ 185 (210)
+||++ +++|+.++++.+.+.+.++++++++.|.+
T Consensus 95 ~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~ 128 (398)
T 4fb2_A 95 YRQLV-AKPFSPEATDLFTEQLRQSTNDLIDARIE 128 (398)
T ss_dssp HHHHH-HTTTCHHHHHTTHHHHHHHHHHHHHTTTT
T ss_pred HHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 79999999999999999999999998854
No 54
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.48 E-value=5.6e-14 Score=112.46 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=90.1
Q ss_pred CCChhHHHHHHHHhhCCcEEEEe-cCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHH-----------hh-hc-Ccc
Q 028387 73 GTLPHRSLKALSERYGPLMFVYF-GNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANI-----------LI-YE-CQD 138 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~-----------~~-~~-~~~ 138 (210)
..+++..+.++ ++|||++++++ ++.+.++++||+++++++.++. +.+++ ...... .. .. +.+
T Consensus 16 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (411)
T 1gwi_A 16 VTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDI-NVWGAWRRGEIPADWPLIGLANPGRS 91 (411)
T ss_dssp CSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCG-GGCHHHHTTCSCTTCTTHHHHSCCSS
T ss_pred cCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCc-ccccccccccCCcccchhhhhccccc
Confidence 56889999999 89999999997 8899999999999999997653 33332 111110 00 01 334
Q ss_pred eeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhh
Q 028387 139 ISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQ 199 (210)
Q Consensus 139 ~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~ 199 (210)
+ +..+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+ .++.+|+...+
T Consensus 92 l-~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~ 147 (411)
T 1gwi_A 92 M-LTVDGAEHRRLRTLV-AQALTVRRVEHMRGRITELTDRLLDELPA---DGGVVDLKAAF 147 (411)
T ss_dssp G-GGCCHHHHHHHHHHH-TTTSCHHHHHTTHHHHHHHHHHHHHTSCC---SCCCEEHHHHT
T ss_pred c-ccCCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHH---cCCCcchHHHH
Confidence 4 556799999999999 79999999999999999999999998863 24467765443
No 55
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.47 E-value=2.4e-13 Score=109.05 Aligned_cols=108 Identities=13% Similarity=0.073 Sum_probs=84.3
Q ss_pred CChhHHHHHHHHhhC-CcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhhcCcceeecCCChhHHHHh
Q 028387 74 TLPHRSLKALSERYG-PLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIYECQDISFSDYGEYWRQVR 152 (210)
Q Consensus 74 ~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~~R 152 (210)
.+++.++.++++++| ||+++..++ +.++++||+++++++++ ...|.+++...........+ ..++..+|+.|+++|
T Consensus 38 ~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~-~~~~~~dg~~h~~~R 114 (421)
T 3lxh_A 38 QGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYRS-PERFSSRVIWVPREAGEAYD-MVPTKLDPPEHTPYR 114 (421)
T ss_dssp GCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHTC-TTTEETTCCSSSHHHHHHCC-CTTTTCCTTTHHHHH
T ss_pred cChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHcC-hhhccCCcccCCcccccccc-cCCccCCcHHHHHHH
Confidence 578999999987766 899998765 58999999999999954 44676665332222222223 334556699999999
Q ss_pred HHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHh
Q 028387 153 KICILQLLSVRRVQSFQHVRNDEVSSLITKIRL 185 (210)
Q Consensus 153 k~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~ 185 (210)
|++ +++|+.+.++.+.+.+.++++++++.|.+
T Consensus 115 ~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~ 146 (421)
T 3lxh_A 115 KAI-DKGLNLAEIRKLEDQIRTIAVEIIEGFAD 146 (421)
T ss_dssp HHH-HHHHSHHHHHTTHHHHHHHHHHHHHTTTT
T ss_pred HHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999 79999999999999999999999998853
No 56
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.44 E-value=4.3e-13 Score=107.77 Aligned_cols=124 Identities=11% Similarity=0.079 Sum_probs=91.9
Q ss_pred CChhHHHHHHHHhhCCcEEEEec--CccEEEEcCHHHHHHHHhhCCCCCCCCCCC-------h--hHH-----HhhhcCc
Q 028387 74 TLPHRSLKALSERYGPLMFVYFG--NSPTLVVSSAELAGEMFKTHDIVISNRPKT-------T--PAN-----ILIYECQ 137 (210)
Q Consensus 74 ~~~~~~~~~~~~~yG~i~~~~~~--~~~~v~i~dp~~~~~il~~~~~~~~~~~~~-------~--~~~-----~~~~~~~ 137 (210)
.+++.++.+++ +|||++++++| +.+.++++||+++++++.++ .|.+++.. . ... .....+.
T Consensus 20 ~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2z3t_A 20 ADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVEN 96 (425)
T ss_dssp HCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHTT
T ss_pred cChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccccccccc
Confidence 57888999986 59999999987 78899999999999999765 57665431 0 000 0111135
Q ss_pred ceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchh-hhhhhcccc
Q 028387 138 DISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRN-CQTSLSSGK 206 (210)
Q Consensus 138 ~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~~~~~~t 206 (210)
++++. +|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+. + .+|+.. +...++.++
T Consensus 97 ~l~~~-dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~---g-~~dl~~~~~~~~~~~v 160 (425)
T 2z3t_A 97 WLVFL-DPPHHTELRSLL-TTEFSPSIVTGLRPRIAELASALLDRLRAQ---R-RPDLVEGFAAPLPILV 160 (425)
T ss_dssp CGGGC-CHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTTS---S-SCBHHHHTTTHHHHHH
T ss_pred ccccC-CchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc---C-CccHHHHHHHHHHHHH
Confidence 55554 599999999999 799999999999999999999999999642 2 567644 334444433
No 57
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.44 E-value=2.6e-13 Score=108.66 Aligned_cols=123 Identities=15% Similarity=0.052 Sum_probs=92.5
Q ss_pred CCChhHHHHHHHHhhCCcE-----EEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCCh--hH-HHh-h-hcCcceeec
Q 028387 73 GTLPHRSLKALSERYGPLM-----FVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTT--PA-NIL-I-YECQDISFS 142 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~-----~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~--~~-~~~-~-~~~~~~~~~ 142 (210)
..+++.++.+++ +|||++ ++++ .+.++++||+++++++.++ ..|.+++... .. ..+ . ..+.++++.
T Consensus 24 ~~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (414)
T 2uuq_A 24 WPNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVMQ 99 (414)
T ss_dssp TTCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGGC
T ss_pred ccCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccccccC
Confidence 357889999985 789998 7765 6899999999999999876 4576665321 11 122 2 224555544
Q ss_pred CCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccch-hhhhhhccc
Q 028387 143 DYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTR-NCQTSLSSG 205 (210)
Q Consensus 143 ~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~~~~~~ 205 (210)
+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+. +.+|+. ++...++.+
T Consensus 100 -~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~----~~vdl~~~~~~~~~~~ 157 (414)
T 2uuq_A 100 -DPPVHTEFRKLV-SRGFTPRQVETVEPTVRKFVVERLEKLRAN----GGGDIVTELFKPLPSM 157 (414)
T ss_dssp -CTTHHHHHHHHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHT----TEEEHHHHTTTHHHHH
T ss_pred -CchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCccHHHHHHHHhHHH
Confidence 699999999999 799999999999999999999999999763 246764 444444443
No 58
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.43 E-value=1.8e-13 Score=109.54 Aligned_cols=126 Identities=11% Similarity=0.026 Sum_probs=91.6
Q ss_pred CCChhHHHHHHHHhhCCcEEEEecC--ccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHH-Hhhh---c-CcceeecCCC
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFGN--SPTLVVSSAELAGEMFKTHDIVISNRPKTTPAN-ILIY---E-CQDISFSDYG 145 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~~--~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~-~~~~---~-~~~~~~~~~g 145 (210)
+.+++..+.+++ +|||++++.+++ .+.+++++|+++++++.+. .|.+++...... .... . +.++ +..+|
T Consensus 26 g~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l-~~~dg 101 (411)
T 2dkk_A 26 GPEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITNDP--RFGRAEVTQRQITRLAPHFKPRPGSL-AFADQ 101 (411)
T ss_dssp SSCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTCT--TEESGGGGGSCBCBSSSCCCCCTTCS-TTCCT
T ss_pred cccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcCC--CcccCCCCCCCccccccchhcccccc-ccCCc
Confidence 456778999987 899999999754 7899999999999999763 454443211000 0111 1 3444 55679
Q ss_pred hhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhh-hhhcccc
Q 028387 146 EYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQ-TSLSSGK 206 (210)
Q Consensus 146 ~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~~~~~~t 206 (210)
+.|+++||++ +++|+.++++.+.+.+.+.++++++.|.+. +..+|+...+ ..++.++
T Consensus 102 ~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---g~~~dl~~~~~~~~~~~v 159 (411)
T 2dkk_A 102 PDHNRLRRAV-AGAFTVGATKRLRPRAQEILDGLVDGILAE---GPPADLVERVLEPFPIAV 159 (411)
T ss_dssp THHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHHH---CSCEEHHHHTTTHHHHHH
T ss_pred hHHHHHHHHh-hHhhCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCeehHHHHHHHHHHHH
Confidence 9999999999 799999999999999999999999999762 3356765433 2344433
No 59
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.43 E-value=2.5e-13 Score=109.94 Aligned_cols=123 Identities=11% Similarity=0.050 Sum_probs=91.5
Q ss_pred hhHHHHHHHHhhCCcE--EEE-ecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHH---------hh----hcCcce
Q 028387 76 PHRSLKALSERYGPLM--FVY-FGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANI---------LI----YECQDI 139 (210)
Q Consensus 76 ~~~~~~~~~~~yG~i~--~~~-~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~---------~~----~~~~~~ 139 (210)
++..+.++ ++||||+ ++. +++.+.+++++++++++++++. ..|.+++....... .. ..+.+
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~- 123 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVES- 123 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCC-
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccC-
Confidence 77888888 5789999 888 7788999999999999999766 55666553221100 00 01224
Q ss_pred eecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhh-hhhccc
Q 028387 140 SFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQ-TSLSSG 205 (210)
Q Consensus 140 ~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~~~~~~ 205 (210)
++..+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+. ++.+|+...+ ..++.+
T Consensus 124 l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~---~~~~dl~~~~~~~~~~~ 186 (450)
T 3tkt_A 124 LVQMDAPKHPKLRRLT-QDWFMPKNLARLDGEIRKIANEAIDRMLGA---GEEGDFMALVAAPYPLH 186 (450)
T ss_dssp GGGCCTTHHHHHHHHH-HTTTSHHHHGGGHHHHHHHHHHHHHHHHHT---CSEEEHHHHTTTHHHHH
T ss_pred cccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCEeeHHHHHHHHHHH
Confidence 4556699999999999 799999999999999999999999999763 4466754433 344443
No 60
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.43 E-value=3.1e-13 Score=108.38 Aligned_cols=123 Identities=12% Similarity=0.195 Sum_probs=91.0
Q ss_pred CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCC---ChhH-H----Hhhhc-CcceeecC
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPK---TTPA-N----ILIYE-CQDISFSD 143 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~---~~~~-~----~~~~~-~~~~~~~~ 143 (210)
..+++..+.++ ++|||+++ + ++.+.++++||+++++++.++. |.+++. .... . .+... +.++ +..
T Consensus 25 ~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 98 (419)
T 1q5d_A 25 AEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGL-FGL 98 (419)
T ss_dssp TTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHST-TTS
T ss_pred hhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhccccc-ccC
Confidence 46789999999 68999999 5 7789999999999999997764 766651 1011 1 11111 2344 445
Q ss_pred CChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccch-hhhhhhcccc
Q 028387 144 YGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTR-NCQTSLSSGK 206 (210)
Q Consensus 144 ~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~~~~~~t 206 (210)
+|+.|+++||++ +++|+.++++.+.+.+.++++++++.|.+ + +.+|+. ++...++.++
T Consensus 99 ~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~-~~~d~~~~~~~~~~~~v 157 (419)
T 1q5d_A 99 PPEDHARVRKLV-NPSFTSRAIDLLRAEIQRTVDQLLDARSG---Q-EEFDVVRDYAEGIPMRA 157 (419)
T ss_dssp CHHHHHHHHHHH-GGGGSHHHHGGGHHHHHHHHHHHHHHHTT---S-SCEETTTTTGGGSHHHH
T ss_pred CchHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHh---c-CCCCHHHHHHHHHHHHH
Confidence 699999999999 79999999999999999999999999964 2 256654 3334444433
No 61
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.40 E-value=4.5e-13 Score=107.33 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=88.4
Q ss_pred CCChhHHHHHHHHhhCCcEEEEecC--ccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhh--cC-cceeecCCChh
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFGN--SPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIY--EC-QDISFSDYGEY 147 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~~--~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~g~~ 147 (210)
..+++..+.++++ ||||+++...| .+.+++++++++++++++. ..|.+++.......... .. .+.++..+|+.
T Consensus 36 ~~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~l~~~dg~~ 113 (415)
T 3mgx_A 36 TLERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAPS-APLTSEYGMMIGFDRDHPDNSGGRMMVVSEHEQ 113 (415)
T ss_dssp STTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCTT-SSEECTTCSSTTCCSSSCCTTTTTSGGGCCHHH
T ss_pred cCChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhCh-hhhcCCccccccccccccccccCCCccccCcHH
Confidence 3588999999987 99999986445 7999999999999999554 35665543222111100 01 33445667999
Q ss_pred HHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 028387 148 WRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNC 198 (210)
Q Consensus 148 wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~ 198 (210)
|+++||++ +++|+.+.++++.+.+.++++++++.|.+ + +.+|+...
T Consensus 114 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~-~~~dl~~~ 159 (415)
T 3mgx_A 114 HRKLRKLV-GPLLSRAAARKLAERVRIEVGDVLGRVLD---G-EVCDAATA 159 (415)
T ss_dssp HHHHHHHH-GGGSSHHHHHHSHHHHHHHHHHHTTTSSS---S-SCEESTTT
T ss_pred HHHHHHHh-HhhhCHHHHHHHHHHHHHHHHHHHHHHHh---c-CCcchHHH
Confidence 99999999 79999999999999999999999988753 2 24665443
No 62
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.40 E-value=9e-13 Score=104.84 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=85.7
Q ss_pred CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhhcCcceeecCCChhHHHHh
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIYECQDISFSDYGEYWRQVR 152 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~~R 152 (210)
..+++.++.+|+++ |||+++..++ +.++++||+++++++++. ..|.+++...........+ ..++..+|+.|+++|
T Consensus 23 ~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~-~~~~~~~g~~h~~~R 98 (396)
T 3oft_A 23 EQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGDA-ERLSSQCLAVTPGLGKVMQ-FIPLQQDGAEHKAFR 98 (396)
T ss_dssp TTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHCT-TTEESTTCCSSTTHHHHHC-CTTTTCCHHHHHHHH
T ss_pred hcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcCc-ccccCCcccCCCccccccc-cCccccCCcHHHHHH
Confidence 56899999999999 9999998864 589999999999999665 4666665322111111112 334556699999999
Q ss_pred HHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHh
Q 028387 153 KICILQLLSVRRVQSFQHVRNDEVSSLITKIRL 185 (210)
Q Consensus 153 k~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~ 185 (210)
|++ +++|+.+.++.+.+.+.++++++++.|.+
T Consensus 99 ~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~ 130 (396)
T 3oft_A 99 TPV-MKGLASRFVVALEPKVQAVARKLMESLRP 130 (396)
T ss_dssp HHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999 79999999999999999999999999964
No 63
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.39 E-value=4.4e-13 Score=106.78 Aligned_cols=119 Identities=10% Similarity=0.035 Sum_probs=89.4
Q ss_pred CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhhcCcceeecCCChhHHHHh
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIYECQDISFSDYGEYWRQVR 152 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~~R 152 (210)
..+++.++.++++ ||||+++. .+.++++||+++++++.++. .|.+++... .... .+.++ +..+|+.|+++|
T Consensus 17 ~~~p~~~~~~l~~-~Gpv~~~~---~~~vvv~~~~~v~~vl~~~~-~f~~~~~~~-~~~~--~~~~l-~~~~g~~h~~~R 87 (398)
T 2xkr_A 17 SREARAAYRWMRA-NQPVFRDR---NGLAAASTYQAVIDAERQPE-LFSNAGGIR-PDQP--ALPMM-IDMDDPAHLLRR 87 (398)
T ss_dssp CTTHHHHHHHHHH-HCSEEECT---TCCEEECSHHHHHHHHTCTT-TEESTTCSS-TTSC--CCSSG-GGCCTTHHHHHH
T ss_pred ccChhHHHHHHHh-cCCeeecC---CCeEEEecHHHHHHHHhCcc-cccCccccC-Cccc--ccccc-cccCchHHHHHH
Confidence 4678999999987 99998663 38999999999999997654 566655322 1111 24454 445699999999
Q ss_pred HHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccch-hhhhhhccc
Q 028387 153 KICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTR-NCQTSLSSG 205 (210)
Q Consensus 153 k~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~~~~~~ 205 (210)
|++ +++|+.++++.+.+.+.++++++++.|.+ + +.+|+. ++...++.+
T Consensus 88 ~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~-~~~d~~~~~~~~~~~~ 136 (398)
T 2xkr_A 88 KLV-NAGFTRKRVKDKEASIAALCDTLIDAVCE---R-GECDFVRDLAAPLPMA 136 (398)
T ss_dssp HHH-GGGSCHHHHHTTHHHHHHHHHHHHHTTTT---T-SEEEHHHHTTTHHHHH
T ss_pred HHh-hhhhCHHHHHHHHHHHHHHHHHHHHhhhh---c-CCccHHHHHHHHHHHH
Confidence 999 79999999999999999999999999854 2 256765 444444443
No 64
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.37 E-value=4.6e-13 Score=106.66 Aligned_cols=115 Identities=11% Similarity=0.108 Sum_probs=79.5
Q ss_pred HHHHHHHhhCCcEEEEec-Cc---cEEEEcCHHHHHHHHhhCCCCCCCCCC------ChhHHHh--hhcCcceeecCCCh
Q 028387 79 SLKALSERYGPLMFVYFG-NS---PTLVVSSAELAGEMFKTHDIVISNRPK------TTPANIL--IYECQDISFSDYGE 146 (210)
Q Consensus 79 ~~~~~~~~yG~i~~~~~~-~~---~~v~i~dp~~~~~il~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~g~ 146 (210)
.+.+|+++ ||++++.++ +. +.++++||+++++++.++. .|.+++. ....... ...+.++++ .+|+
T Consensus 18 ~~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~ 94 (398)
T 1lfk_A 18 PADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDHQ-QFSTRRRWDPRDEIGGKGIFRPRELVGNLMD-YDPP 94 (398)
T ss_dssp ECHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCTT-TEEECTTCCC-------------CCTTCGGG-CCTT
T ss_pred hhHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhCc-ccccccccccccccCCcccccccccccCccc-cCCH
Confidence 34557766 999999875 55 8999999999999993332 3555543 1111111 112445544 5699
Q ss_pred hHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhh
Q 028387 147 YWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQT 200 (210)
Q Consensus 147 ~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 200 (210)
.|+++||++ ++.|+.++++.+.+.+.++++++++.|.+. ++.+|+...+.
T Consensus 95 ~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~~~~d~~~~~~ 144 (398)
T 1lfk_A 95 EHTRLRRKL-TPGFTLRKMQRMAPYIEQIVNDRLDEMERA---GSPADLIAFVA 144 (398)
T ss_dssp HHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHH---CSSEEHHHHTT
T ss_pred HHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccHHHHHH
Confidence 999999999 799999999999999999999999999742 33567655444
No 65
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.35 E-value=2.2e-13 Score=110.02 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=72.8
Q ss_pred CChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhhcCcceeecCCChhHHHHhH
Q 028387 74 TLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIYECQDISFSDYGEYWRQVRK 153 (210)
Q Consensus 74 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk 153 (210)
.+++.++.++ ++||||+++..++ .++++||+++++++.++.. |.+++....... ..+.+.++..+|+.|+++||
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~~-f~~~~~~~~~~~--~~~~~~l~~~dg~~h~~~Rr 126 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPDI-FTTKSLVERAEP--VMRGPVLAQMHGKEHSAKRR 126 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTTT-EECCCTTSCCCC--SCC-------------CCHH
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCccc-cccccccccccc--ccCCCccccCCcHHHHHHHH
Confidence 4677778776 5899999886655 8999999999999977653 665543222111 12444456667999999999
Q ss_pred HHHHhhcChhHHhhhHHHHHHHHHHHHHHHHh
Q 028387 154 ICILQLLSVRRVQSFQHVRNDEVSSLITKIRL 185 (210)
Q Consensus 154 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~ 185 (210)
++ +++|+.+.++.+.+.+.++++++++.|.+
T Consensus 127 ~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~ 157 (441)
T 3nc3_A 127 IV-VRSFIGDALDHLSPLIKQNAENLLAPYLE 157 (441)
T ss_dssp HH-HHHHHHTHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HH-HhhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99 79999999999999999999999988853
No 66
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.33 E-value=1.5e-12 Score=103.72 Aligned_cols=121 Identities=13% Similarity=0.008 Sum_probs=87.2
Q ss_pred CChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHH------Hhhhc-CcceeecCCCh
Q 028387 74 TLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPAN------ILIYE-CQDISFSDYGE 146 (210)
Q Consensus 74 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~g~ 146 (210)
.+++.++.++ ++|||+++ + +.+.++++||+++++++.+ ..|.+++...... ..... +.+++ ..+|+
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~ 85 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIIL-FQDEP 85 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGG-GCCTT
T ss_pred cCchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccc-cCCch
Confidence 4678888877 58999998 6 5889999999999999975 2454432211000 11111 45554 44699
Q ss_pred hHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccch-hhhhhhcccc
Q 028387 147 YWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTR-NCQTSLSSGK 206 (210)
Q Consensus 147 ~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~~~~~~t 206 (210)
.|+++||++ +++|+.++++.+.+.+.++++++++.|.+ ++.+|+. ++...++.++
T Consensus 86 ~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~~v 141 (397)
T 3buj_A 86 DHGRLRGVV-GPAFSPSALRRLEPVIAGTVDDLLRPALA----RGAMDVVDELAYPLALRA 141 (397)
T ss_dssp HHHHHHHHH-GGGSSTTTTGGGHHHHHHHHHHHHHHHHT----TTEEEHHHHTHHHHHHHH
T ss_pred hHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHhh----cCCeehHHHHHHHhHHHH
Confidence 999999999 79999999999999999999999999974 2356754 3434444433
No 67
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.32 E-value=3.6e-12 Score=102.06 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=79.8
Q ss_pred CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhh--------hcCcceeecCC
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILI--------YECQDISFSDY 144 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 144 (210)
..+++.++.++ ++||||+++.+| .++++||+++++++++.. .+.+++......... ..+.++ +..+
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~d 101 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHPS-SCSDRTKSTIFQRQLAAETQPRPQGPASF-LFLD 101 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCTT-EECCGGGCHHHHHHHC---------CCCG-GGCC
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCcc-cccCcccccccccccccccccccccccch-hhcC
Confidence 57899999998 578999987665 899999999999996643 344444322222111 123344 4556
Q ss_pred ChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHH
Q 028387 145 GEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIR 184 (210)
Q Consensus 145 g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~ 184 (210)
|+.|+++||++ +++|+.++++.+.+.+.++++++++ +.
T Consensus 102 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~-l~ 139 (418)
T 3r9b_A 102 PPDHTRLRGLV-SKAFAPRVIKRLEPEITALVDQLLD-AV 139 (418)
T ss_dssp TTHHHHHHHHH-HGGGSHHHHGGGHHHHHHHHHHHHH-TC
T ss_pred CchHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHh-hh
Confidence 99999999999 7999999999999999999999998 74
No 68
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.32 E-value=6.6e-13 Score=105.72 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=85.3
Q ss_pred CCChhHHHHHHHHhhCCcEEEEe-cCccEEEEcCHHHHHHHHhhCCCCCC-C-CCCC--hhHH--Hhhh-cCcceeecCC
Q 028387 73 GTLPHRSLKALSERYGPLMFVYF-GNSPTLVVSSAELAGEMFKTHDIVIS-N-RPKT--TPAN--ILIY-ECQDISFSDY 144 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~dp~~~~~il~~~~~~~~-~-~~~~--~~~~--~~~~-~~~~~~~~~~ 144 (210)
..+++..+.+| ++|||++++++ ++.+.++++||+++++++.++ .|. + ++.. .... .+.. .+.+++++
T Consensus 15 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 89 (396)
T 1n40_A 15 GDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI-- 89 (396)
T ss_dssp SSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH--
T ss_pred ccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH--
Confidence 56889999999 99999999997 789999999999999999764 354 3 3221 1000 0111 13445444
Q ss_pred ChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccch
Q 028387 145 GEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTR 196 (210)
Q Consensus 145 g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~ 196 (210)
.|+++||++ ++.|+.+ ++.+.+.+.++++++++.|.+. ++.+|+.
T Consensus 90 --~h~~~R~~~-~~~fs~~-~~~~~~~i~~~~~~l~~~l~~~---~~~~d~~ 134 (396)
T 1n40_A 90 --ADAGLRKAV-MKAITPK-APGLEQFLRDTANSLLDNLITE---GAPADLR 134 (396)
T ss_dssp --HHTTCHHHH-HHHTSSC-STTHHHHHHHHHHHHHHHHHHH---CSCEETT
T ss_pred --HHHHHHHHH-HHhhChH-HHHhHHHHHHHHHHHHHHHHhc---CCCccHH
Confidence 999999999 7999999 9999999999999999999762 3356665
No 69
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.30 E-value=7.9e-12 Score=100.45 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=85.0
Q ss_pred CChhHHHHHHHHhhCCcEEEEe-cCccEEEEcCHHHHHHHHhhCCCCCCCCCC---ChhHH-----HhhhcCcceeecCC
Q 028387 74 TLPHRSLKALSERYGPLMFVYF-GNSPTLVVSSAELAGEMFKTHDIVISNRPK---TTPAN-----ILIYECQDISFSDY 144 (210)
Q Consensus 74 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~dp~~~~~il~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~ 144 (210)
.+++.++.+++++ |||+++.. ++.+.+++++++++++++.+.. .|.+++. ..... .....+.+.++..+
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~~-~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 115 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNHD-IFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAMD 115 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCTT-TEECCGGGTCSSSSCCC-------CCCCCGGGCC
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCCc-ccccccccCCCCcccccccccccccccCcccccC
Confidence 5689999999976 99999987 4678999999999999997753 3443320 00000 01111223345667
Q ss_pred ChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccc
Q 028387 145 GEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKT 195 (210)
Q Consensus 145 g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~ 195 (210)
|+.|+++||++ ++.|+.+.++.+.+.+.+.++++++.|. .++.+|+
T Consensus 116 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~----~~~~~dl 161 (426)
T 3rwl_A 116 RPRHDEQRKAV-SPIVAPANLAALEGTIRERVSKTLDGLP----VGEEFDW 161 (426)
T ss_dssp TTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHTSC----SSSCEEH
T ss_pred chHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhh----cCCCcch
Confidence 99999999999 7999999999999999999999998882 3446674
No 70
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.24 E-value=6.5e-12 Score=99.01 Aligned_cols=118 Identities=10% Similarity=0.095 Sum_probs=84.4
Q ss_pred hhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCC--ChhHH-----H--hhh-cCcceeecCCC
Q 028387 76 PHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPK--TTPAN-----I--LIY-ECQDISFSDYG 145 (210)
Q Consensus 76 ~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~--~~~~~-----~--~~~-~~~~~~~~~~g 145 (210)
++..+.++ ++|||++++ + +.++++||+++++++.+. ..|.+++. ..... . ... .|.++ +..+|
T Consensus 1 p~~~~~~l-r~~Gpv~~~---g-~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~g 73 (368)
T 1io7_A 1 MYDWFSEM-RKKDPVYYD---G-NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTM-LTSDP 73 (368)
T ss_dssp CHHHHHHH-HHHCSEEEC---S-SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSG-GGCCT
T ss_pred CCHHHHHH-HhcCCeEeE---C-CEEEEecHHHHHHHHcCc-cccccccccccccccccccccccccccccccc-ccCCC
Confidence 35667778 489999987 3 689999999999999874 35766653 10111 1 110 12444 45569
Q ss_pred hhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhh-hhhcccc
Q 028387 146 EYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQ-TSLSSGK 206 (210)
Q Consensus 146 ~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~~~~~~t 206 (210)
+.|+++||++ +++|+.++++.+.+.+.++++++++.| + ++ .+|+...+ ..++.++
T Consensus 74 ~~h~~~R~~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l-~---~g-~~d~~~~~~~~~~~~v 129 (368)
T 1io7_A 74 PLHDELRSMS-ADIFSPQKLQTLETFIRETTRSLLDSI-D---PR-EDDIVKKLAVPLPIIV 129 (368)
T ss_dssp THHHHHHGGG-TTTTCHHHHHHHHHHHHHHHHHHHHTC-C---TT-SEEHHHHTTTHHHHHH
T ss_pred hHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHh-h---cC-CccHHHHHHHHHHHHH
Confidence 9999999999 799999999999999999999999998 3 22 56765433 4444443
No 71
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.19 E-value=1.1e-11 Score=96.76 Aligned_cols=89 Identities=11% Similarity=0.151 Sum_probs=69.6
Q ss_pred HhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhhcCcceeecCCChhHHHHhHHHHHhhcChhH
Q 028387 85 ERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIYECQDISFSDYGEYWRQVRKICILQLLSVRR 164 (210)
Q Consensus 85 ~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~ 164 (210)
++||||+++ | .++++||+++++++.++. .|.+++...... ..+.++++ .+|+.|+++||++ +++|+.++
T Consensus 2 r~~gpv~~~---g--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~---~~~~~l~~-~~g~~~~~~R~~~-~~~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD---G--AWHVYKYSDVKHVLMNDK-IFSSNPGNRYSN---AGGISFIT-MDNPEHKEFRDIS-APYFLPSK 70 (343)
T ss_dssp -CCCCEEET---T--EEEECSHHHHHHHHHCTT-TEESSCSSCCC------CCGGGG-CCHHHHHHHHHHH-HHHHSHHH
T ss_pred CCcCCeeee---C--eEEEcCHHHHHHHHhChh-hcccCCcCCCCC---cccccccc-CCchHHHHHHHHh-hhhcCHHH
Confidence 589999876 3 899999999999998753 576665211111 12455544 5699999999999 79999999
Q ss_pred HhhhHHHHHHHHHHHHHHHH
Q 028387 165 VQSFQHVRNDEVSSLITKIR 184 (210)
Q Consensus 165 l~~~~~~~~~~~~~~~~~l~ 184 (210)
++++.+.+.++++++++.|.
T Consensus 71 l~~~~~~i~~~~~~l~~~l~ 90 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNID 90 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998875
No 72
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.15 E-value=2.1e-11 Score=96.05 Aligned_cols=114 Identities=8% Similarity=0.059 Sum_probs=80.7
Q ss_pred hhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCCh--hHH---Hh-hhcC----cceeecCCC
Q 028387 76 PHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTT--PAN---IL-IYEC----QDISFSDYG 145 (210)
Q Consensus 76 ~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~--~~~---~~-~~~~----~~~~~~~~g 145 (210)
++..+.+++ +|||++++. | .++++||+++++++.++. .|.+++... ... .. ...+ .++++ .+|
T Consensus 1 p~~~~~~lr-~~gpv~~~~-g---~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~dg 73 (367)
T 3b4x_A 1 MYDWFKQMR-KESPVYYDG-K---VWNLFKYEDCKMVLNDHK-RFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLT-SDP 73 (367)
T ss_dssp CHHHHHHHH-HHCSEEECS-S---SEEECSHHHHHHHHHCTT-TEECCCSSTTTTHHHHHHTCCCCCCGGGSSGGG-CCT
T ss_pred CCHHHHHHH-HcCCceeeC-C---EEEEecHHHHHHHHcCch-hhccCcccccccccccccccchhhccccccccc-CCc
Confidence 355677775 799999887 3 899999999999998753 566654211 110 01 1113 45544 469
Q ss_pred hhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchh-hhhhhccc
Q 028387 146 EYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRN-CQTSLSSG 205 (210)
Q Consensus 146 ~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~~~~~~ 205 (210)
+.|+++||++ +++|+.++++. +.+.++++++++.|. + .+|+.. +...++.+
T Consensus 74 ~~h~~~R~~~-~~~fs~~~l~~--~~i~~~~~~l~~~l~-----g-~~d~~~~~~~~~~~~ 125 (367)
T 3b4x_A 74 PLHDELRNLT-ADAFNPSNLPV--DFVREVTVKLLSELD-----E-EFDVIESFAIPLPIL 125 (367)
T ss_dssp THHHHHHHTT-GGGGSGGGSCH--HHHHHHHHHHHHTCC-----S-EEEHHHHTTTHHHHH
T ss_pred hhHHHHHHHH-HHhcCHhhhcc--hHHHHHHHHHHHhcc-----C-CcchHHHHHHhhHHH
Confidence 9999999999 79999999988 999999999998874 2 367653 33444433
No 73
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.13 E-value=3.2e-10 Score=90.71 Aligned_cols=120 Identities=10% Similarity=0.066 Sum_probs=85.4
Q ss_pred CCCcccc---ccccCCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCCh---hHHHhhh
Q 028387 61 KLPILGN---LHQLLGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTT---PANILIY 134 (210)
Q Consensus 61 ~~p~lG~---~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~---~~~~~~~ 134 (210)
++|.+|- -..+ ..+|+.++++++ ++|||++ ..+.+.+++++++++++++++.. .|.+..... .......
T Consensus 19 ~~P~~~~dp~~~~~-~~dP~~~~~~lR-~~gPV~~--~~~~~~~~vt~~~~v~~vl~d~~-~fs~~~~~~~~~~~~~~~~ 93 (412)
T 4dnj_A 19 GVPHLGIDPFALDY-FADPYPEQETLR-EAGPVVY--LDKWNVYGVARYAEVYAVLNDPL-TFCSSRGVGLSDFKKEKPW 93 (412)
T ss_dssp TSCEECCCTTSHHH-HHSCHHHHHHHH-HHCSSEE--ETTTTEEEECSHHHHHHHHTCTT-TEESTTCSSSSCTTTSCCS
T ss_pred CCCccCCCCCCHHH-HhCcHHHHHHHH-hcCCEEE--ECCCCEEEECCHHHHHHHHcCCc-cccCCCccccccccccccc
Confidence 5666652 1122 357888998887 4699974 45668899999999999996543 332221110 1111111
Q ss_pred cCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhh
Q 028387 135 ECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLS 186 (210)
Q Consensus 135 ~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~ 186 (210)
.+.+.++..||+.|+++||++ +++|+.++++++.+.+.+.++++++.+.+.
T Consensus 94 ~~~~~~~~~Dg~~H~r~R~~~-~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~ 144 (412)
T 4dnj_A 94 RPPSLILEADPPAHTRTRAVL-SKVLSPATMKRLRDGFAAAADAKIDELLAR 144 (412)
T ss_dssp SCCCTTTTCCTTHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCccccCChHHHHHHHhhc-ccccCHHHHHHhhHHHHHHHHHHHHhhhcc
Confidence 233455667799999999999 799999999999999999999999998653
No 74
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.10 E-value=1e-11 Score=99.52 Aligned_cols=106 Identities=16% Similarity=0.141 Sum_probs=76.7
Q ss_pred CCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhH-----HHhhhcCcceeecCCChh
Q 028387 73 GTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPA-----NILIYECQDISFSDYGEY 147 (210)
Q Consensus 73 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~ 147 (210)
..+++.. ++.++|||++++.+++.. +++++++++++++.++...+..+...... ......+ +.++..+|+.
T Consensus 32 ~~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~dg~~ 107 (416)
T 3p3o_A 32 PNFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMV-DFLQSLDGAD 107 (416)
T ss_dssp TTCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTTEECSHHHHHHHHTCCSSHHHHHHH-HSGGGCCHHH
T ss_pred ccCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcccccCCccccccccccccchhhhhc-CccccCCchH
Confidence 3567777 455679999999887666 99999999999997764211111000000 0000112 3345667999
Q ss_pred HHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHH
Q 028387 148 WRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKI 183 (210)
Q Consensus 148 wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l 183 (210)
|+++||++ +++|+.+.++.+.+.+.++++++++.|
T Consensus 108 h~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l 142 (416)
T 3p3o_A 108 HRRLRGLA-THPFTPRRITAVQPFVRSTVEQLIDKL 142 (416)
T ss_dssp HHHHHHTT-CGGGSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 799999999999999999999999988
No 75
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=98.99 E-value=1.8e-10 Score=91.65 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=82.7
Q ss_pred CChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhhcCcceeecCCChhHHHHhH
Q 028387 74 TLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIYECQDISFSDYGEYWRQVRK 153 (210)
Q Consensus 74 ~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk 153 (210)
.+++..+.+++++ ||++++..| .+++++++.+++++.+. .|..++...........+.+ ++..+|+.|+++||
T Consensus 20 ~dp~~~~~~lr~~-~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~~~~~-l~~~dg~~h~~~R~ 92 (394)
T 2wiy_A 20 NNPYPWYRRLQQD-HPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAVASDT-ALGSDPPHHTVLRR 92 (394)
T ss_dssp HCCHHHHHHHHHH-CSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGGGGGS-GGGCCTTHHHHHHH
T ss_pred cCccHHHHHHHhc-CCeEEecCC---eEEEcCHHHHHHHHcCC--Cccccccccccccchhcccc-cccCCchHHHHHHH
Confidence 4678888888764 899877542 78999999999999653 34332110000011111233 45667999999999
Q ss_pred HHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhc
Q 028387 154 ICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLHKGDFKTRNCQTSLS 203 (210)
Q Consensus 154 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~ 203 (210)
++ +++|+++.++.+.+.+.+.++++++.|. .++.+|+...+..++
T Consensus 93 ~~-~~~fs~~~~~~~~~~i~~~~~~l~~~~~----~~~~~d~~~~~~~~~ 137 (394)
T 2wiy_A 93 QT-NKWFTPKLVDGWVRTTRELVGDLLDGVE----AGQVIEARRDLAVVP 137 (394)
T ss_dssp HH-HTTCSHHHHHHHTHHHHHHHHHHHHTCC----TTCCEEHHHHHTHHH
T ss_pred HH-HhccCHHHHHHHHHHHHHHHHHHHHHHh----ccCCeeHHHHHHhhh
Confidence 99 7999999999999999999999998774 234577765554444
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=98.68 E-value=1.5e-07 Score=75.28 Aligned_cols=108 Identities=12% Similarity=0.035 Sum_probs=75.9
Q ss_pred CChhHHHHHHHHhhCCcEEEEe-cCccEEEEcCHHHHHHHHhhCCCCCCCCCCChhHHHhhhcCcceeecCCChhHHHHh
Q 028387 74 TLPHRSLKALSERYGPLMFVYF-GNSPTLVVSSAELAGEMFKTHDIVISNRPKTTPANILIYECQDISFSDYGEYWRQVR 152 (210)
Q Consensus 74 ~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~~R 152 (210)
.+++..+.+++++.+ .-.+|. .+....++++.+.+++++.+.. .|++....... .....+...+...|+++|+++|
T Consensus 37 ~~~~~~~~~lr~~~~-~~~~~~~~~gg~W~vtr~~dv~~vl~d~~-~fs~~~~~~~~-~~~~~~~~~~~~~D~p~H~r~R 113 (417)
T 4dxy_A 37 DGYHEAWKKVQHPGI-PDLIWTPFTGGHWIATNGDTVKEVYSDPT-RFSSEVIFLPK-EAGEKAQMVPTKMDPPEHTPYR 113 (417)
T ss_dssp GCHHHHHHHHSCTTC-CSEEEESSTTSEEEECSHHHHHHHHTCTT-TEESSCCSSST-TSSCSSCTTTTTCCTTTHHHHH
T ss_pred cChHHHHHHHHhhCC-CCEEecCCCCCEEEECCHHHHHHHHcCch-hccCCCccccc-ccccccccCcccCCcHHHHHHH
Confidence 467788888876543 222332 3335788999999999996543 45433221111 1111133445566799999999
Q ss_pred HHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHh
Q 028387 153 KICILQLLSVRRVQSFQHVRNDEVSSLITKIRL 185 (210)
Q Consensus 153 k~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~ 185 (210)
|++ +++|+.++++++.+.+.+.++++++.+.+
T Consensus 114 rll-~~~Fs~~~l~~~~~~i~~~~~~lld~l~~ 145 (417)
T 4dxy_A 114 KAL-DKGLNLAKIRKVEDKVREVASSLIDSFAA 145 (417)
T ss_dssp HHH-HHHHCHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred HHh-hhhcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999 79999999999999999999999999864
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=97.45 E-value=5.5e-07 Score=71.16 Aligned_cols=107 Identities=11% Similarity=0.022 Sum_probs=70.0
Q ss_pred CCC-CCCCCcccccccc----CCCChhHHHHHHHHhhCCcEEEEecCccEEEEcCHHHHHHHHhhCCCCCCCCCCCh--h
Q 028387 56 PPS-PPKLPILGNLHQL----LGTLPHRSLKALSERYGPLMFVYFGNSPTLVVSSAELAGEMFKTHDIVISNRPKTT--P 128 (210)
Q Consensus 56 ~pg-p~~~p~lG~~~~~----~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~dp~~~~~il~~~~~~~~~~~~~~--~ 128 (210)
||| ++++|.+|+...+ ...+++.++.+++++ |+++.. .+.+++++++++++++.+. .|.+++... .
T Consensus 36 ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d~--~f~~~~~~~~~~ 108 (381)
T 2yjn_B 36 IRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDDP--AFTRATGRTPEW 108 (381)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHCS--SEESSCCCCCHH
T ss_pred CCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcCC--CcCCCccccccc
Confidence 556 4467888876431 156889999999976 998753 5689999999999999763 465443211 1
Q ss_pred HH----HhhhcCcceeecCCChhHHHHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHH
Q 028387 129 AN----ILIYECQDISFSDYGEYWRQVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIR 184 (210)
Q Consensus 129 ~~----~~~~~~~~~~~~~~g~~wk~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~ 184 (210)
.. .....+.++++. ||+.| +++|+ + .+.+.+.++++++.|.
T Consensus 109 ~~~~~~~~~~~~~~l~~~-dg~~H--------~~~Ft-----~-~~~i~~~~~~ll~~~~ 153 (381)
T 2yjn_B 109 MRAAGAPPAEWAQPFRDV-HAASW--------EGEVP-----D-VGELAESFAGLLPGAG 153 (381)
T ss_dssp HHHHTCCHHHHTHHHHHH-HHCCC--------CSCCC-----C-CSCHHHHTSTTSCC--
T ss_pred ccccccccchhhhhhhhC-Cchhh--------hhccC-----C-hHHHHHHHHHHHHhcc
Confidence 00 011113444444 58888 37788 3 7788888888888875
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.24 E-value=8 Score=23.77 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=39.9
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec--------CccEEEEcCHHHHHHHHhhCCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG--------NSPTLVVSSAELAGEMFKTHDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~dp~~~~~il~~~~~~~~~~ 123 (210)
.-++|++.. .-..+.+.++..+||+|..+.+. |.-.|...+++.++.++..+...+.++
T Consensus 13 ~lfV~~Lp~---~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr 79 (103)
T 1s79_A 13 SVYIKGFPT---DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKET 79 (103)
T ss_dssp CEEEECCCT---TCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTT
T ss_pred EEEEECCCC---CCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCE
Confidence 445666653 34456778888999999887764 234666789999999987544444433
No 79
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=76.89 E-value=11 Score=23.38 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=40.7
Q ss_pred CCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEec------CccEEEEcCHHHHHHHHhh
Q 028387 55 LPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 55 ~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~v~i~dp~~~~~il~~ 115 (210)
.+|.|...-++||+.. .-..+.+.++..+||+|..+.+. |.-.|-..+++.++.++..
T Consensus 3 ~~~~~~~~l~V~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPY---KITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCTTCCSEEEEESCCT---TCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHH
Confidence 4555555667788763 34456678888999999888762 2346667899888888764
No 80
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=75.01 E-value=7.6 Score=21.80 Aligned_cols=47 Identities=6% Similarity=0.100 Sum_probs=32.6
Q ss_pred ChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhhCCCCCC
Q 028387 75 LPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKTHDIVIS 121 (210)
Q Consensus 75 ~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~~~~~~~ 121 (210)
-..+.+.++..+||++..+.+.. .-.|-..+++.++.++..+...+.
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~ 66 (75)
T 1iqt_A 11 TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 66 (75)
T ss_dssp CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBT
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeEC
Confidence 34566788889999998877631 235666799999988865443333
No 81
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=72.02 E-value=9.6 Score=22.57 Aligned_cols=52 Identities=12% Similarity=0.225 Sum_probs=35.9
Q ss_pred CCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEec----CccEEEEcCHHHHHHH
Q 028387 58 SPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG----NSPTLVVSSAELAGEM 112 (210)
Q Consensus 58 gp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~i~dp~~~~~i 112 (210)
.|...-++|++.. .-..+.+.++..+||+|..+.+. |.-.|-..+++.++.+
T Consensus 9 ~~~~~l~V~~Lp~---~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 9 HHGSKVFVGRCTE---DMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp --CCEEEEESCCT---TCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCCEEEEeCCCC---CCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 3344556677663 34556788888999999988875 3456777899888753
No 82
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=68.40 E-value=14 Score=21.09 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=35.7
Q ss_pred ccccccccCCCC----hhHHHHHHHHhhCCcEEEEec-------CccEEEEcCHHHHHHHHhh
Q 028387 64 ILGNLHQLLGTL----PHRSLKALSERYGPLMFVYFG-------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 64 ~lG~~~~~~~~~----~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~dp~~~~~il~~ 115 (210)
++|++..- ... ..+.+.++..+||+|..+.+. |.-.|-..+++.++.++..
T Consensus 5 ~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 5 VVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp EEESCCCC-CTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCCC-cHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 45666542 222 457788889999999888765 2335667899999888864
No 83
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=67.84 E-value=14 Score=20.68 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=32.4
Q ss_pred ChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhhCCCCCCC
Q 028387 75 LPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKTHDIVISN 122 (210)
Q Consensus 75 ~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~~~~~~~~ 122 (210)
-..+.+.++..+||++..+.+.. .-.|-..+++.++.++.-+...+.+
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 67 (75)
T 2mss_A 11 TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 67 (75)
T ss_dssp CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSS
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECC
Confidence 44566788889999988877532 2345567999999888644433433
No 84
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=64.40 E-value=14 Score=22.80 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=35.1
Q ss_pred ccCCCChhHHHHHHHHhhCCcEEEEecCcc-EEEEcCHHHHHHHHh
Q 028387 70 QLLGTLPHRSLKALSERYGPLMFVYFGNSP-TLVVSSAELAGEMFK 114 (210)
Q Consensus 70 ~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~-~v~i~dp~~~~~il~ 114 (210)
.++..--..-+.++...||.+.--|+-.+. .+++.+|+.+++++.
T Consensus 22 ~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 22 TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp ECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred eCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 343445567788899999998888887774 566689999999997
No 85
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=60.92 E-value=25 Score=21.31 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=38.4
Q ss_pred CCCccccccccCCCC----hhHHHHHHHHhhCCcEEEEec-------CccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTL----PHRSLKALSERYGPLMFVYFG-------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~----~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~dp~~~~~il~~ 115 (210)
..-++|++..- ... ..+.+.++..+||+|..+.+. |.-.|-..+++.++.++..
T Consensus 16 ~~l~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 16 SVIVVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp SEEEEESCCCC-CTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred CEEEEeCCCcc-hhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 34577888753 222 567888999999999888865 2345666788888887765
No 86
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=60.68 E-value=7.4 Score=24.08 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=39.0
Q ss_pred ccCCCChhHHHHHHHHhhCCcEEEEecCc-cEEEEcCHHHHHHHHhh--CCCCCCCCC
Q 028387 70 QLLGTLPHRSLKALSERYGPLMFVYFGNS-PTLVVSSAELAGEMFKT--HDIVISNRP 124 (210)
Q Consensus 70 ~~~~~~~~~~~~~~~~~yG~i~~~~~~~~-~~v~i~dp~~~~~il~~--~~~~~~~~~ 124 (210)
.++...-..-+.++...||++.--|+-.+ -.+++.+|+.+++++.. ....|.-+.
T Consensus 12 ~FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~t 69 (101)
T 3ctr_A 12 TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQT 69 (101)
T ss_dssp ECCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCC
T ss_pred eCChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEE
Confidence 44444555678888889998888888776 46667899999999974 344454333
No 87
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.51 E-value=29 Score=21.24 Aligned_cols=62 Identities=18% Similarity=0.108 Sum_probs=43.0
Q ss_pred CccccccccCCC-ChhHHHHHHHHhhC-CcEEEEecCccEEEEcCHHHHHHHHhh-CCCCCCCCCC
Q 028387 63 PILGNLHQLLGT-LPHRSLKALSERYG-PLMFVYFGNSPTLVVSSAELAGEMFKT-HDIVISNRPK 125 (210)
Q Consensus 63 p~lG~~~~~~~~-~~~~~~~~~~~~yG-~i~~~~~~~~~~v~i~dp~~~~~il~~-~~~~~~~~~~ 125 (210)
-+++|+..-... .....+.++..+|| +|..+ .+|.-.|...+.+.++..+.. +...+.+|+.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 347888754121 22345788999995 88877 568899999999999888854 4444555553
No 88
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=57.07 E-value=29 Score=21.44 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=36.8
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEec-----C----ccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-----N----SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-----~----~~~v~i~dp~~~~~il~~ 115 (210)
.--++|++.. .-..+.+.++..+||+|..+.+. + .-.|...+++.++.++..
T Consensus 7 ~~lfV~nL~~---~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 7 KEVTFARLND---NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CEEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred cEEEEECCCC---CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 3456677663 34566788888999999887753 1 126777899999888864
No 89
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.81 E-value=32 Score=21.27 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=38.9
Q ss_pred CCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEec---CccEEEEcCHHHHHHHHh
Q 028387 57 PSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---NSPTLVVSSAELAGEMFK 114 (210)
Q Consensus 57 pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~dp~~~~~il~ 114 (210)
|.|...-++||+.. .-..+.+.++..+||.|..+.+. |.-.|-..+++.++....
T Consensus 13 ~~~~~~LfV~nLp~---~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 13 GVPSRVIHIRKLPI---DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp CCCCCEEEECSCCT---TSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 33444567787764 33456678899999999888764 345677789988888876
No 90
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.93 E-value=38 Score=21.48 Aligned_cols=53 Identities=15% Similarity=0.252 Sum_probs=36.9
Q ss_pred CCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEec---CccEEEEcCHHHHHHHHh
Q 028387 59 PPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---NSPTLVVSSAELAGEMFK 114 (210)
Q Consensus 59 p~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~dp~~~~~il~ 114 (210)
|...-++|++.. .-..+.+.++..+||.|..+.+. +.-.|-..+.+.++.++.
T Consensus 30 ps~~LfVgNLp~---~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 30 PSRVIHIRKLPI---DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp CCSEEEEESCCT---TCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 334557777764 23456688899999999887764 334666678888877775
No 91
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.37 E-value=34 Score=20.79 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=37.6
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec--CccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG--NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--~~~~v~i~dp~~~~~il~~ 115 (210)
--++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 17 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 17 RVVVSGLPP---SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEEEESCCS---SCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 346677663 34567788899999999887764 4567777899999888864
No 92
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.22 E-value=30 Score=20.19 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=37.7
Q ss_pred CCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEec-----C----ccEEEEcCHHHHHHHHhh
Q 028387 57 PSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-----N----SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 57 pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-----~----~~~v~i~dp~~~~~il~~ 115 (210)
|.|...-++|++.. .-..+.+.++..+||+|..+.+. + .-.|-..+++.++.++..
T Consensus 12 ~~~~~~l~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 12 PDPNCCLGVFGLSL---YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp CCGGGCEEEESCCS---SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCC---CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 33444556677663 34456688888999999877763 1 235566799988888864
No 93
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=53.68 E-value=48 Score=22.44 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=35.0
Q ss_pred ccccccccCCCChhHHHHHHHHhhCCcEEEEecC-----ccEEEEcCHHHHHHHHhh
Q 028387 64 ILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN-----SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 64 ~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~-----~~~v~i~dp~~~~~il~~ 115 (210)
++||+.. .-..+.+.++..+||.|-++.+.. .-.|-..|++.++.....
T Consensus 50 ~VgNL~~---~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 50 IVENLFY---PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp EECSCCS---CCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH
T ss_pred EEeCcCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH
Confidence 4677752 344567888999999998887642 246667799888887765
No 94
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=53.47 E-value=34 Score=20.54 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=34.4
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEec-----Cc----cEEEEcCHHHHHHHHhh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-----NS----PTLVVSSAELAGEMFKT 115 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-----~~----~~v~i~dp~~~~~il~~ 115 (210)
-++||+.. .-..+.+.++..+||+|..+.+. +. -.|-..+++.++.++..
T Consensus 22 lfV~nLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 22 LIVNYLPQ---NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 45666653 33456788888999999877653 11 24667899988888754
No 95
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.44 E-value=25 Score=20.15 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=34.2
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFK 114 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~ 114 (210)
..-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++.
T Consensus 6 ~~l~v~nlp~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 6 SGLYIRGLQP---GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp CEEEEESCCT---TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred cEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 3456677653 344566778888999998877532 23566678888888775
No 96
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=52.21 E-value=39 Score=20.86 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=39.8
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec--CccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG--NSPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--~~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
--++||+..- -..+.+.++..+||+|..+.+. +.-.|-..+++.++.++.. +...+.++
T Consensus 18 ~l~V~nLp~~---~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 18 RVVVSGLPPS---GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp CEEEEECCSS---CCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3466777632 3345567788899999888764 4556777899988888864 44444443
No 97
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=52.10 E-value=25 Score=22.06 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=39.9
Q ss_pred CCCCCCCCccccccccCC-C------ChhHHHHHHHHhhCCcEEEEec-----CccEEEEcCHHHHHHHHhh-CCCCCCC
Q 028387 56 PPSPPKLPILGNLHQLLG-T------LPHRSLKALSERYGPLMFVYFG-----NSPTLVVSSAELAGEMFKT-HDIVISN 122 (210)
Q Consensus 56 ~pgp~~~p~lG~~~~~~~-~------~~~~~~~~~~~~yG~i~~~~~~-----~~~~v~i~dp~~~~~il~~-~~~~~~~ 122 (210)
+|.|...-.+.|+..-.. . ...+-+.+...+||.|..+.+. |.-.|-..+++.++..... ++..|.+
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 455665666666665421 1 1123445666789999888763 3335556788877777654 4444544
Q ss_pred C
Q 028387 123 R 123 (210)
Q Consensus 123 ~ 123 (210)
|
T Consensus 83 R 83 (114)
T 3s6e_A 83 K 83 (114)
T ss_dssp E
T ss_pred E
Confidence 4
No 98
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=49.86 E-value=47 Score=21.10 Aligned_cols=54 Identities=19% Similarity=0.133 Sum_probs=37.3
Q ss_pred CCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 59 PPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 59 p~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
|...-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 45 ~~~~l~V~nLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 45 PNCCLGVFGLSL---YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CSSCBCEETCTT---SCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 334556677653 344566888889999998887631 235666899999888864
No 99
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=48.03 E-value=46 Score=20.49 Aligned_cols=50 Identities=12% Similarity=0.160 Sum_probs=35.5
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEecC-------ccEEEEcCHHHHHHHHhh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN-------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~-------~~~v~i~dp~~~~~il~~ 115 (210)
-++|++.. .--.+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 8 lfV~nLp~---~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 8 IFIKNLDK---SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EEECCCCC---CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 46677763 334577888899999998776531 236777899999888854
No 100
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.53 E-value=46 Score=20.31 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=39.3
Q ss_pred CCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---ccEEEEcCHHHHHHHHh
Q 028387 58 SPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---SPTLVVSSAELAGEMFK 114 (210)
Q Consensus 58 gp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---~~~v~i~dp~~~~~il~ 114 (210)
.|...-++||+..- .-..+-+.++..+||.|..+.+.. .-.|-..+++.++.+..
T Consensus 13 ~p~~~l~V~nLp~~--~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 13 ETRRVVHIMDFQRG--KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCCEEEEESCCCS--SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCC--cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 34455677877741 345567888999999999888752 34677789988888875
No 101
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=47.03 E-value=28 Score=20.01 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=36.0
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEec-----C----ccEEEEcCHHHHHHHHhhC
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-----N----SPTLVVSSAELAGEMFKTH 116 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-----~----~~~v~i~dp~~~~~il~~~ 116 (210)
..-++|++.. .-..+.+.++..+||+|..+.+. + .-.|-..+++.++.++...
T Consensus 12 ~~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 12 GKMFVGGLSW---DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp TEEEEECCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 3456677763 34556778888999998877753 1 1355667888888888543
No 102
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.92 E-value=48 Score=20.32 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=39.5
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEec---CccEEEEcCHHHHHHHHhh-CCCCCCCCC
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---NSPTLVVSSAELAGEMFKT-HDIVISNRP 124 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~dp~~~~~il~~-~~~~~~~~~ 124 (210)
-++||+.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++.. +...+.+++
T Consensus 13 l~V~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 13 ILAKNLPA---GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 34566552 34557788899999999888863 3346667889888887754 444454443
No 103
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=46.65 E-value=45 Score=19.96 Aligned_cols=57 Identities=7% Similarity=0.109 Sum_probs=37.6
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEec---------CccEEEEcCHHHHHHHHhh-CCCCCCC
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---------NSPTLVVSSAELAGEMFKT-HDIVISN 122 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~dp~~~~~il~~-~~~~~~~ 122 (210)
-++|++.. .-..+.+.++..+||+|..+.+. |.-.|-..+++.++.++.. +...+.+
T Consensus 26 l~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 26 LFVTGVHE---EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp EEEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred EEEeCCCC---CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 45666653 33456688888999999887763 1235666899988888864 4433433
No 104
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.62 E-value=42 Score=19.57 Aligned_cols=61 Identities=18% Similarity=0.301 Sum_probs=39.9
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh-CCCCCCCCC
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT-HDIVISNRP 124 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~-~~~~~~~~~ 124 (210)
..-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++.. +...+.++.
T Consensus 6 ~~l~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 6 SGLYVGSLHF---NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CEEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred cEEEEeCCCC---CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3445676653 344566888889999998877632 235666899999888864 444444443
No 105
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=46.21 E-value=44 Score=19.74 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=37.2
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEE--------EEecC---------ccEEEEcCHHHHHHHHhh-CCCCCCC
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMF--------VYFGN---------SPTLVVSSAELAGEMFKT-HDIVISN 122 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~--------~~~~~---------~~~v~i~dp~~~~~il~~-~~~~~~~ 122 (210)
..-++|++.. .-..+.+.++..+||.+.. +.+.. .-.|-..+++.++.++.. +...+.+
T Consensus 14 ~~l~V~nLp~---~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 14 NTIFVQGLGE---NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp SEEEEECCCS---SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3456677653 3445678888899998866 55421 235566789888888853 4433433
No 106
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=46.19 E-value=46 Score=19.97 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=34.6
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec---CccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~dp~~~~~il~~ 115 (210)
+-++||+.. .--.+.+.++..+||+|..+++. |.-.|-..+++.++.+...
T Consensus 9 wL~VgNL~~---~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~ 62 (89)
T 2wbr_A 9 WLLLKNLTA---QIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMA 62 (89)
T ss_dssp EEEEECCCT---TCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred eEEEeCCCc---cCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHH
Confidence 445677663 34457889999999999988763 3346666788666655533
No 107
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.85 E-value=48 Score=20.08 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=36.7
Q ss_pred CCCCccccccccCCCChhHHHHHHHHhhCCcEEEEec---CccEEEEcCHHHHHHHHh
Q 028387 60 PKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---NSPTLVVSSAELAGEMFK 114 (210)
Q Consensus 60 ~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~dp~~~~~il~ 114 (210)
...-++||+.. .-..+.+.++..+||.|..+.+. +.-.|-..+.+.++.++.
T Consensus 15 ~~~l~V~nLp~---~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 15 SRVLHIRKLPG---EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp CSEEEEESCCT---TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 34567777763 33456678888999999887764 335666788888887775
No 108
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=44.65 E-value=44 Score=20.76 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=32.8
Q ss_pred ccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHh
Q 028387 64 ILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFK 114 (210)
Q Consensus 64 ~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~ 114 (210)
++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++.
T Consensus 40 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 96 (124)
T 2jwn_A 40 YVGNVDY---GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVA 96 (124)
T ss_dssp EEEEECT---TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHT
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHh
Confidence 4455542 334567888899999988776531 23566789999988883
No 109
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=44.50 E-value=62 Score=21.42 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=35.3
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEec---------CccEEEEcCHHHHHHHHhh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~dp~~~~~il~~ 115 (210)
-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 75 l~V~nLp~---~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 75 LFVTSIHE---EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133 (165)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH
Confidence 46666653 34567788899999999877753 2235666889888888854
No 110
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=43.88 E-value=56 Score=20.25 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=37.1
Q ss_pred CCccccccccCCCChhHHHHHHHHhhC-CcEEEEec-----CccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYG-PLMFVYFG-----NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~-----~~~~v~i~dp~~~~~il~~ 115 (210)
--++||+.. .-..+.+.++..+|| .|..+.+. |.-.|-..+++.++..+..
T Consensus 30 ~l~VgnLp~---~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 30 RITMKNLPE---GCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp EEEEECSSC---CCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCC---CCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH
Confidence 456677763 345677888999999 78777763 4457777899998888854
No 111
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=43.58 E-value=33 Score=17.58 Aligned_cols=6 Identities=17% Similarity=0.556 Sum_probs=2.2
Q ss_pred HHHHHh
Q 028387 43 LKITRR 48 (210)
Q Consensus 43 ~~~~~~ 48 (210)
++.+++
T Consensus 32 ~~~RRR 37 (44)
T 2l2t_A 32 VYVRRK 37 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 333333
No 112
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=43.15 E-value=51 Score=19.53 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHhhCCcEEEEec----CccEEEEcCHHHHHHHHhh
Q 028387 75 LPHRSLKALSERYGPLMFVYFG----NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 75 ~~~~~~~~~~~~yG~i~~~~~~----~~~~v~i~dp~~~~~il~~ 115 (210)
-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 12 ~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 12 AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp CSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHH
Confidence 3456688888999998877763 2345666799988888763
No 113
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.91 E-value=33 Score=19.01 Aligned_cols=47 Identities=4% Similarity=0.040 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhhCCCCCCC
Q 028387 76 PHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKTHDIVISN 122 (210)
Q Consensus 76 ~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~~~~~~~~ 122 (210)
..+.+.++..+||++..+.+.. .-.|-..+++.++.++......+.+
T Consensus 13 t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 68 (77)
T 1uaw_A 13 TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDS 68 (77)
T ss_dssp CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSS
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCC
Confidence 3455778888999887666532 1234456888888887654433333
No 114
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.31 E-value=53 Score=19.53 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=39.9
Q ss_pred CCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEec-------CccEEEEcCHHHHHHHHhh-CCCCCCC
Q 028387 59 PPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-------NSPTLVVSSAELAGEMFKT-HDIVISN 122 (210)
Q Consensus 59 p~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~dp~~~~~il~~-~~~~~~~ 122 (210)
+...-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++.. +...+.+
T Consensus 14 ~~~~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 14 QVVNLYVKNLDD---GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp SCCCEEEECCCT---TCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 344556777763 23446678888899998877754 2235667899999888864 4433433
No 115
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=42.22 E-value=47 Score=18.90 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=34.9
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 8 ~l~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 8 HVFVGDLSP---EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp EEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 345566653 344566888889999988776532 235666899999888864
No 116
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=42.11 E-value=49 Score=19.10 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=38.6
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec-------CccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-------NSPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
.-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++.. +...+.++
T Consensus 10 ~l~V~nlp~---~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 10 QIFVRNLPF---DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp EEEECSCCT---TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 345676653 34457788888999998877653 2235666799988888764 44334443
No 117
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=41.45 E-value=54 Score=22.73 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=37.4
Q ss_pred CCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEec-----C----ccEEEEcCHHHHHHHHhh
Q 028387 59 PPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-----N----SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 59 p~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-----~----~~~v~i~dp~~~~~il~~ 115 (210)
|...-++|++.. .--.+.+.++.++||+|..+.+. + .-.|-..+++.++.++..
T Consensus 14 p~~tlfVgnLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 14 PMASLYVGDLHP---DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -CCEEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCC---CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 444457788763 34457788888999999877653 1 236777899988888754
No 118
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=40.79 E-value=60 Score=20.94 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=34.7
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEecCc-----cEEEEcCHHHHHHHHhh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNS-----PTLVVSSAELAGEMFKT 115 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~-----~~v~i~dp~~~~~il~~ 115 (210)
-++||+.. .--.+.+.++..+||+|-++.+... -.|-..|++.++.....
T Consensus 31 I~V~NL~~---~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 31 IIVENLFY---PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EEEESCCS---CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH
T ss_pred EEECCCCC---CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHH
Confidence 34677752 3345668899999999988776432 46667788877777644
No 119
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.86 E-value=57 Score=19.17 Aligned_cols=51 Identities=22% Similarity=0.205 Sum_probs=35.6
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 10 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 10 RLFVRNLSY---TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEEEECCCT---TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 345566653 344567888889999998888632 235667899999888854
No 120
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.72 E-value=44 Score=20.87 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=36.7
Q ss_pred CCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---ccEEEEcCHHHHHHHHh
Q 028387 59 PPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---SPTLVVSSAELAGEMFK 114 (210)
Q Consensus 59 p~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---~~~v~i~dp~~~~~il~ 114 (210)
|...-++||+..- .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++.
T Consensus 24 p~~~l~V~NLp~~--~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 24 LGRVIHLSNLPHS--GYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CCCEEEEESCCCS--SCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCc--cCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHH
Confidence 3345567777641 133456778889999998888752 34666678888887775
No 121
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=39.61 E-value=51 Score=18.61 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=35.8
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
..-++|++.. .-..+.+.++..+||++..+.+.. .-.|-..+++.++.++..
T Consensus 8 ~~l~V~nl~~---~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 8 RVLYVGGLAE---EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp SEEEEECCCT---TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCC---CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 4456676653 334567788889999998887621 235667889988888844
No 122
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=39.56 E-value=53 Score=18.75 Aligned_cols=44 Identities=14% Similarity=0.001 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhhCCC
Q 028387 75 LPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKTHDI 118 (210)
Q Consensus 75 ~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~~~~ 118 (210)
-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++.-+..
T Consensus 18 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~ 70 (89)
T 3ucg_A 18 ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDES 70 (89)
T ss_dssp CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTC
T ss_pred CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCC
Confidence 34566888888999988776531 235666788888888733433
No 123
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=39.43 E-value=58 Score=19.13 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=40.2
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec-CccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-NSPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
--++|++..- .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++.. +...+.++
T Consensus 12 ~l~V~nlp~~--~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 12 RLFIGNLPLK--NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp EEEEESSTTS--CCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred EEEEeCCCcc--cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3456776630 34456788888999999887763 4456777899999888865 44334333
No 124
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.29 E-value=59 Score=19.18 Aligned_cols=51 Identities=8% Similarity=0.051 Sum_probs=35.6
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec--------CccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG--------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 19 ~l~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 19 KLFISGLPF---SCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp CEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH
Confidence 446666653 33456688888999998877763 2235667899999888854
No 125
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=38.88 E-value=58 Score=19.04 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=34.3
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEec---------CccEEEEcCHHHHHHHHhh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~dp~~~~~il~~ 115 (210)
-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 5 l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 5 VYLGSIPY---DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 34565542 33456688888999999888763 2235666899988888854
No 126
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=38.53 E-value=66 Score=19.56 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=30.6
Q ss_pred HHHHHHHHhhCCcEEEEecC-----------ccEEEEcCHHHHHHHHhh-CCCCCCCCC
Q 028387 78 RSLKALSERYGPLMFVYFGN-----------SPTLVVSSAELAGEMFKT-HDIVISNRP 124 (210)
Q Consensus 78 ~~~~~~~~~yG~i~~~~~~~-----------~~~v~i~dp~~~~~il~~-~~~~~~~~~ 124 (210)
+-+.+...+||+|..+.+.. .-.|-..+++.++..... ++..|.+|.
T Consensus 30 ~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~ 88 (105)
T 3v4m_A 30 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 88 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 45666777899999888642 224566788888777644 444455443
No 127
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.00 E-value=63 Score=19.16 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=36.3
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEec-------CccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~dp~~~~~il~~ 115 (210)
..-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 16 ~~l~V~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 16 KRLHVSNIPF---RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 74 (103)
T ss_dssp CEEEEESCCT---TCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHH
Confidence 3446677653 34456678888999999887763 2345667899999888864
No 128
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=37.79 E-value=68 Score=19.47 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=36.5
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhhC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKTH 116 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~~ 116 (210)
--++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++...
T Consensus 27 ~lfV~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 27 KMFIGGLSW---QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp CEEEESCCT---TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 446666653 334566788889999998887632 2366778999999888654
No 129
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.54 E-value=60 Score=18.78 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=36.7
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
..-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 17 ~~l~V~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 17 STVYVSNLPF---SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp TSEEEESCCT---TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 3456677763 344566888889999998887632 236667899988888854
No 130
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.49 E-value=46 Score=19.15 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=33.4
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEec----CccEEEEcCHHHHHHHH
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG----NSPTLVVSSAELAGEMF 113 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~i~dp~~~~~il 113 (210)
-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.+.
T Consensus 8 l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 8 VFVGRCTG---DMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp EEEESCCS---SSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred EEEeCCCC---CCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 35566653 34456778888999999888874 34567778888887643
No 131
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.48 E-value=64 Score=19.06 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=36.4
Q ss_pred CCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 59 PPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 59 p~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
+...-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 11 ~~~~l~V~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 11 TKRVLYVGGLAE---EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CCSCEEEESCCS---SCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 334556777764 244577888889999998777632 124555788888888854
No 132
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=37.38 E-value=61 Score=18.80 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=35.3
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC--------ccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN--------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~--------~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 18 ~l~v~nlp~---~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 18 TVFVGNLEA---RVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp EEEEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHH
T ss_pred EEEEECCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 445666653 344567888899999998877632 235666788888888863
No 133
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=37.33 E-value=64 Score=19.65 Aligned_cols=67 Identities=18% Similarity=0.083 Sum_probs=39.8
Q ss_pred CCCCCCCccccccccC--CCChhHHHHHHHHhhCCcEEEEecC----------ccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 57 PSPPKLPILGNLHQLL--GTLPHRSLKALSERYGPLMFVYFGN----------SPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 57 pgp~~~p~lG~~~~~~--~~~~~~~~~~~~~~yG~i~~~~~~~----------~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
+.|...-++.|+..-. .....+-+.+...+||+|..+.+.. .-.|-..+++.+...... ++..|.+|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 3444566667776310 2344567777888999998877531 124556788877777654 44445444
No 134
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=36.93 E-value=55 Score=22.54 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=35.4
Q ss_pred ccccccccCCCChhHHHHHHHHhhCCcEEEEec--------CccEEEEcCHHHHHHHHhhCC
Q 028387 64 ILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG--------NSPTLVVSSAELAGEMFKTHD 117 (210)
Q Consensus 64 ~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~dp~~~~~il~~~~ 117 (210)
++|++. ..-..+.+.++..+||+|..+.+. |.-.|-..+++.++.++....
T Consensus 113 ~V~nLp---~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 113 YIKGFP---TDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp EEECCC---TTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred EecCCC---CcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC
Confidence 455554 234567888999999998877653 234566679999999885543
No 135
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.92 E-value=71 Score=19.41 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=37.2
Q ss_pred CCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEec---CccEEEEcCHHHHHHHHh
Q 028387 59 PPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---NSPTLVVSSAELAGEMFK 114 (210)
Q Consensus 59 p~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~dp~~~~~il~ 114 (210)
|...-++||+.. .-..+.+.++..+||.|..+.+. +.-.|-..+.+.++.++.
T Consensus 14 p~~~l~V~nLp~---~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 14 VSPVVHVRGLCE---SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp CCSEEEEESCCS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 334567777653 33456788899999999888764 334666778888887775
No 136
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.63 E-value=67 Score=19.08 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=40.0
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++.. +...+.++
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 17 TVYVGGLDE---KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp EEEEECCCT---TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 446677653 344567888999999998887643 235667899999998875 33334443
No 137
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=36.49 E-value=76 Score=19.66 Aligned_cols=59 Identities=7% Similarity=0.129 Sum_probs=39.8
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec---------CccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---------NSPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
.-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++.. +...+.++
T Consensus 24 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 24 ILFVTGVHE---EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 346666653 33456788888999999888763 2336777899999888854 44444444
No 138
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.43 E-value=65 Score=18.85 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=35.6
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec------------CccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG------------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~------------~~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 7 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 7 GLFIKNLNF---STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CEEEESCCT---TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 445666653 34456778888999998777653 1235666899999998875
No 139
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=36.39 E-value=75 Score=19.56 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=38.6
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC--------ccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN--------SPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~--------~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++.. +...+.++
T Consensus 9 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 9 KLFIGGLNR---ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp EEEEECCTT---TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 345566653 344567888889999988777642 235666799999888864 33334433
No 140
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.29 E-value=68 Score=19.02 Aligned_cols=56 Identities=9% Similarity=-0.005 Sum_probs=37.9
Q ss_pred CCCCCCCccccccccCCCChhHHHHHHHHh-hCCcEEEEec--------CccEEEEcCHHHHHHHHhh
Q 028387 57 PSPPKLPILGNLHQLLGTLPHRSLKALSER-YGPLMFVYFG--------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 57 pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~-yG~i~~~~~~--------~~~~v~i~dp~~~~~il~~ 115 (210)
+.|...-++|++.. .-..+.+.++..+ ||+|..+.+. +.-.|-..+++.++.++..
T Consensus 6 ~~~~~~l~V~nLp~---~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 6 SGPEYSLFVGDLTP---DVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp SSCCCCEEEECCCT---TCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCC---CCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 34444567777764 2345667788888 9998877652 2235667899999888864
No 141
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=35.97 E-value=65 Score=18.75 Aligned_cols=54 Identities=15% Similarity=0.294 Sum_probs=35.6
Q ss_pred CCccccccccCC-CChhHHHHHHHHhhCCcEEEEec------CccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLG-TLPHRSLKALSERYGPLMFVYFG------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~-~~~~~~~~~~~~~yG~i~~~~~~------~~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++..-.. .+..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 456677664211 11223444899999999888764 4456777899988888864
No 142
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.84 E-value=42 Score=20.60 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=34.8
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhhC
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKTH 116 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~~ 116 (210)
-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..+
T Consensus 30 l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~ 89 (116)
T 1x4b_A 30 LFIGGLSF---ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 89 (116)
T ss_dssp EEEECCTT---CCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhC
Confidence 35566653 334566788889999988777532 2355667999999988653
No 143
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.62 E-value=70 Score=18.96 Aligned_cols=59 Identities=19% Similarity=0.163 Sum_probs=39.0
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++.. +...+.++
T Consensus 15 ~l~V~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 15 TLKVDNLTY---RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp EEEEESCCT---TCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 446677663 344567888889999998887642 235667788888888763 44344433
No 144
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=35.41 E-value=73 Score=19.15 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=35.5
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEec---------CccEEEEcCHHHHHHHHhh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~dp~~~~~il~~ 115 (210)
-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 29 l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 29 LFVTSIHE---EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 45666653 33456688888999999888764 2235667899988888864
No 145
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.20 E-value=71 Score=18.91 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=33.9
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEec---------CccEEEEcCHHHHHHHHhh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~dp~~~~~il~~ 115 (210)
-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 11 l~V~nlp~---~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 11 VFVGNIPY---EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp EEEESCCT---TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred EEEeCCCC---cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45566552 34456688888999998777653 1235556799999888864
No 146
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=35.15 E-value=91 Score=20.55 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHhhC--CcEEEEec-----C----ccEEEEcCHHHHHHHHhh
Q 028387 75 LPHRSLKALSERYG--PLMFVYFG-----N----SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 75 ~~~~~~~~~~~~yG--~i~~~~~~-----~----~~~v~i~dp~~~~~il~~ 115 (210)
-..+.+.++..+|| +|..+.+. + .-.|-..+++.++.++..
T Consensus 67 ~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 67 TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 34567888899999 88877752 1 236667899999988866
No 147
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=34.84 E-value=73 Score=18.99 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=34.9
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec--------CccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG--------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~dp~~~~~il~~ 115 (210)
.-+++++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 31 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 31 KLLVSNLDF---GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 446666653 33456678888899999777653 1235666799998888864
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=34.61 E-value=88 Score=20.10 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhhCCcEEEEec--------CccEEEEcCHHHHHHHHhh
Q 028387 76 PHRSLKALSERYGPLMFVYFG--------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 76 ~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~dp~~~~~il~~ 115 (210)
..+.+.++.++||+|..+.+. +.-.|-..+++.++.++..
T Consensus 13 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~ 60 (166)
T 3md3_A 13 TEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 60 (166)
T ss_dssp CHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHH
Confidence 456778888999999887763 2245667799999888843
No 149
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=34.58 E-value=79 Score=19.26 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=37.9
Q ss_pred CCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEec---CccEEEEcCHHHHHHHHhh
Q 028387 59 PPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 59 p~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~dp~~~~~il~~ 115 (210)
|...-++||+.. .--.+.+.++..+||+|..+.+. |.-.|-..+.+.++.+...
T Consensus 20 ps~~l~V~NLp~---~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLID---GVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCC---CCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 444567787763 23446678899999999887763 4456667788888887753
No 150
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.46 E-value=78 Score=19.16 Aligned_cols=40 Identities=13% Similarity=0.263 Sum_probs=31.4
Q ss_pred hhHHHHHHHHhhCCcEEEEecC----ccEEEEcCHHHHHHHHhh
Q 028387 76 PHRSLKALSERYGPLMFVYFGN----SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 76 ~~~~~~~~~~~yG~i~~~~~~~----~~~v~i~dp~~~~~il~~ 115 (210)
..+.+.++..+||+|..+.+.+ .-.|-..+++.++..+..
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 3577899999999998888743 346777899988888865
No 151
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.35 E-value=68 Score=19.49 Aligned_cols=47 Identities=11% Similarity=0.002 Sum_probs=31.7
Q ss_pred ccccccccCCCChhHHHHHHHHhhCCcEEEEec---------CccEEEEcCHHHHHHHH
Q 028387 64 ILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---------NSPTLVVSSAELAGEMF 113 (210)
Q Consensus 64 ~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~dp~~~~~il 113 (210)
++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++
T Consensus 29 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (114)
T 2cq4_A 29 FCMQLAA---RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 84 (114)
T ss_dssp EEESCCT---TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH
Confidence 4555542 33456688888999999888774 12355567887777777
No 152
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.21 E-value=72 Score=18.71 Aligned_cols=59 Identities=10% Similarity=0.110 Sum_probs=39.4
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhhCCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKTHDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~~~~~~~~~ 123 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++.-+...+.++
T Consensus 12 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~ 79 (99)
T 2dgs_A 12 KIFVGGIPH---NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGK 79 (99)
T ss_dssp EEEEESCCS---SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCe
Confidence 446676653 344566888889999998887632 23566789999988886444444443
No 153
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=34.16 E-value=73 Score=20.66 Aligned_cols=56 Identities=9% Similarity=0.139 Sum_probs=36.4
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhhCCCCCC
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKTHDIVIS 121 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~~~~~~~ 121 (210)
-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.+..++..+...+.
T Consensus 90 l~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~ 154 (167)
T 2cjk_A 90 IFVGGIGP---DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFK 154 (167)
T ss_dssp EEEEEECT---TCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSS
T ss_pred EEECCCCC---CCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeC
Confidence 34555542 334566888888999998877542 235666899999988864433333
No 154
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=34.09 E-value=1.2e+02 Score=21.20 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=36.7
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec----CccEEEEcCHHHHHHHHh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG----NSPTLVVSSAELAGEMFK 114 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~i~dp~~~~~il~ 114 (210)
.-++|++... .-..+.+.++.++||+|..+.+. +.-.|-..+++.++.++.
T Consensus 36 ~l~V~nLp~~--~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~ 90 (229)
T 2adc_A 36 VLLVSNLNPE--RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 90 (229)
T ss_dssp EEEEESCCTT--TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCcc--cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 3456776631 23457788888999999888875 345677789999988885
No 155
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.96 E-value=77 Score=19.00 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=36.5
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
..-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 16 ~~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 16 KTVFIRNLSF---DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CCEEEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 4556777763 344566788888999998887641 235666799999888864
No 156
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=33.86 E-value=64 Score=18.05 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHhhCCcEEEEec---------CccEEEEcCHHHHHHHHhh
Q 028387 75 LPHRSLKALSERYGPLMFVYFG---------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 75 ~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~dp~~~~~il~~ 115 (210)
-..+.+.++..+||++..+.+. +.-.|-..+++.++.++..
T Consensus 13 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 13 VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 3456677888899998877653 1235667899999888864
No 157
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.58 E-value=74 Score=18.64 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=35.4
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEec---CccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~dp~~~~~il~~ 115 (210)
..-++|++ .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 16 ~~l~V~n~-----~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 16 NTLYVYGE-----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp SEEEEECS-----SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CEEEEcCC-----CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 34566772 23456788888999999888875 2345666799988888855
No 158
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.27 E-value=79 Score=18.89 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=39.3
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEE-EEec--------CccEEEEcCHHHHHHHHhhCCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMF-VYFG--------NSPTLVVSSAELAGEMFKTHDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~-~~~~--------~~~~v~i~dp~~~~~il~~~~~~~~~~ 123 (210)
.-++|++.. .-..+.+.++..+||.+.. +.+. |.-.|-..+++.++.++..+...+.++
T Consensus 17 ~l~V~nLp~---~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr 84 (104)
T 1wg5_A 17 FVRLRGLPF---GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 84 (104)
T ss_dssp EEEEESCCT---TCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCc
Confidence 345666653 3445678888889998764 5442 234677789999999997755445444
No 159
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=33.10 E-value=86 Score=20.97 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=38.6
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhhCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKTHDIVI 120 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~~~~~~ 120 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..+...+
T Consensus 15 ~l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~ 79 (196)
T 1l3k_A 15 KLFIGGLSF---ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79 (196)
T ss_dssp EEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEE
Confidence 446677763 344567888999999987776531 23577789999999986644333
No 160
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=33.02 E-value=78 Score=18.77 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=36.0
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC--------ccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN--------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~--------~~~v~i~dp~~~~~il~~ 115 (210)
..-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 16 ~~l~v~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 16 RKLFVGMLNK---QQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CEEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 3456677653 334566888889999988777542 235666899988888854
No 161
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.67 E-value=77 Score=18.60 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=38.3
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---ccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---SPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++.. +...+.++
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 17 RLFVGNLPP---DITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp EEEEESCCT---TCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred EEEEeCCCC---CCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 446677653 344566888889999998887643 335556788888877744 43334433
No 162
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=32.54 E-value=79 Score=18.65 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=35.9
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEec-CccEEEEcCHHHHHHHHhh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~i~dp~~~~~il~~ 115 (210)
-++|++.. ..-..+.+.++..+||+|..+.+. |.-.|-..+++.++.++..
T Consensus 25 l~V~nLp~--~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 25 LFIGNLPL--KNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp EEEESCCS--SCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCc--ccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 45676653 023456688888999999888763 4456667899988888864
No 163
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.18 E-value=41 Score=20.54 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=34.3
Q ss_pred CCCccccccccCCCChhHHHH---HHHHhhCCcEEEEecC------------ccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLK---ALSERYGPLMFVYFGN------------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~---~~~~~yG~i~~~~~~~------------~~~v~i~dp~~~~~il~~ 115 (210)
..-++|++..- -..+.+. ++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 16 ~~l~V~nLp~~---~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 16 NLVFVVGLSQR---LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp SCEEEEEECTT---TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCCC---CCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 34567777643 2233445 7888999998877542 234566799988888865
No 164
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.75 E-value=83 Score=18.68 Aligned_cols=53 Identities=11% Similarity=0.205 Sum_probs=36.1
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhhCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKTHD 117 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~~~ 117 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..+.
T Consensus 18 ~l~V~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~ 79 (105)
T 2dh8_A 18 KLFVGGLDW---STTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 79 (105)
T ss_dssp EECCBSCCT---TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCC
Confidence 445666653 344567888889999988776532 23566678998888887643
No 165
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.60 E-value=83 Score=18.66 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=36.2
Q ss_pred CCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC----------ccEEEEcCHHHHHHHHhhCC
Q 028387 59 PPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN----------SPTLVVSSAELAGEMFKTHD 117 (210)
Q Consensus 59 p~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~----------~~~v~i~dp~~~~~il~~~~ 117 (210)
|...-++|++.. .-..+.+.++..+|| |..+.+.. .-.|-..+++.++.++.-+.
T Consensus 14 ~~~~l~V~nlp~---~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g 78 (104)
T 1wi8_A 14 PPYTAFLGNLPY---DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 78 (104)
T ss_dssp SCEEEEEESCCS---SCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGT
T ss_pred CCCEEEEeCCCC---cCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCC
Confidence 334456677653 344566788888999 88877631 23566789999988883333
No 166
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=31.60 E-value=18 Score=18.91 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=15.0
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhC
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYG 88 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG 88 (210)
.+|++||++.- ..........+.+.+|
T Consensus 30 ~ipilgn~fs~-pawisa~~~~~~k~~g 56 (57)
T 1b35_D 30 HIPVLGNIFST-PAWISAKAADLAKLFG 56 (57)
T ss_dssp CCCCSCCSSSS-CTTCCCCHHHHHHHTT
T ss_pred ccccccccccc-hHHHHHHHHHHHHHhC
Confidence 57999998875 3333333344444443
No 167
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=31.43 E-value=1.1e+02 Score=19.76 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=39.5
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec----CccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG----NSPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
.-++|++..- -..+.+.++..+||+|..+.+. |.-.|-..+++.++..+.. +...+.++
T Consensus 75 ~l~V~nl~~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 138 (150)
T 2i2y_A 75 KVYVGNLGNN---GNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGC 138 (150)
T ss_dssp EEEEESCCSC---CSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSS
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4566777542 3445678888899999888764 3346667899988888864 44334433
No 168
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.27 E-value=77 Score=18.18 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=37.2
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEec-CccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~i~dp~~~~~il~~ 115 (210)
..-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 10 ~~l~V~nlp~---~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 10 WKIFVGNVSA---ACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp CCEEEESCCT---TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 4456677763 34456678888999999888764 3456667899988888764
No 169
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.06 E-value=87 Score=18.71 Aligned_cols=51 Identities=8% Similarity=-0.014 Sum_probs=36.0
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCC-cEEEEec----------CccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGP-LMFVYFG----------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~-i~~~~~~----------~~~~v~i~dp~~~~~il~~ 115 (210)
--++|++.. .-..+.+.++..+||+ |..+.+. +.-.|-..+++.++.++..
T Consensus 10 ~l~V~nLp~---~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 10 RLFIGGIPK---MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEEEECCCT---TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEEEeCCCC---cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 345676653 3445677888899998 8887764 1235667899999988864
No 170
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.00 E-value=78 Score=18.15 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=36.6
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEec-CccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~i~dp~~~~~il~~ 115 (210)
.--++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 9 ~~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 9 VKLFIGNLPR---EATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp EEEEEESCCS---SCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHH
T ss_pred eEEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 3446676653 34456688889999999887764 3456667899988888753
No 171
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.74 E-value=83 Score=18.38 Aligned_cols=54 Identities=9% Similarity=0.010 Sum_probs=36.6
Q ss_pred CCCCCccccccccCCCChhHHHHHHHHhhCCcE-EEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 59 PPKLPILGNLHQLLGTLPHRSLKALSERYGPLM-FVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 59 p~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~-~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
+...-++|++.. .-..+.+.++..+||++. .+.+.. .-.|-..+++.++.++..
T Consensus 8 ~~~~l~V~nLp~---~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 8 MAASLWMGDLEP---YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp SSSEEEECSCCT---TCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred CccEEEEeCCCC---CCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 334456677763 344567788889999988 776531 225556799999888864
No 172
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.53 E-value=84 Score=18.34 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=36.8
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---ccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---~~~v~i~dp~~~~~il~~ 115 (210)
..-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 18 ~~l~V~nlp~---~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 18 TRLWVGGLGP---NTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp SCEEEECCCS---SCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 3456677663 234567788889999998887643 345666799988888864
No 173
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.43 E-value=87 Score=18.92 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=33.3
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEec-------CccEEEEcCHHHHHHHHhh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~dp~~~~~il~~ 115 (210)
-++|++.. .-..+.+.++..+||+|..+.+. |.-.|-..+++.++.++..
T Consensus 32 l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 32 LHVSNIPF---RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp EEEESCCT---TCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred EEEECCCC---cCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 35565543 34456788888999998777763 2235556788888777754
No 174
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=30.42 E-value=93 Score=18.81 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=38.3
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec---------CccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---------NSPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
.-++|++.. .-..+.+.++..+||+|..+.+. |.-.|-..+++.++.++.. +...+.++
T Consensus 28 ~l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 28 RLYVGSLHF---NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp EEEEECCCS---SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 345676653 34456678888999998877653 1235667899999888853 33334333
No 175
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.30 E-value=86 Score=19.07 Aligned_cols=60 Identities=12% Similarity=0.162 Sum_probs=37.1
Q ss_pred CCCCCCCCccccccccCC--CC------hhHHHHHHHHhhCCcEEEEec-----CccEEEEcCHHHHHHHHhh
Q 028387 56 PPSPPKLPILGNLHQLLG--TL------PHRSLKALSERYGPLMFVYFG-----NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 56 ~pgp~~~p~lG~~~~~~~--~~------~~~~~~~~~~~yG~i~~~~~~-----~~~~v~i~dp~~~~~il~~ 115 (210)
-|.|...-++.|+..-.. .+ ..+.+.+...+||+|..+.+. |.-.|-..+++.++.++..
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHH
Confidence 344555666677743210 01 135677788899998877653 3335556788888887754
No 176
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=30.23 E-value=60 Score=16.61 Aligned_cols=7 Identities=43% Similarity=0.686 Sum_probs=2.7
Q ss_pred HHHHHhC
Q 028387 43 LKITRRS 49 (210)
Q Consensus 43 ~~~~~~~ 49 (210)
++.++++
T Consensus 33 ~~~RRR~ 39 (44)
T 2jwa_A 33 ILIKRRQ 39 (44)
T ss_dssp HHHHHHC
T ss_pred hheehhh
Confidence 3333333
No 177
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=29.91 E-value=1.1e+02 Score=19.58 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=33.6
Q ss_pred ccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 64 ILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 64 ~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
++|++.. .-..+.+.++.++||++..+.+.. .-.|-..+++.++.++..
T Consensus 6 ~v~nlp~---~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 63 (167)
T 1fxl_A 6 IVNYLPQ---NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63 (167)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEcCCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH
Confidence 3455542 234566788889999988776532 235667899999998864
No 178
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=29.82 E-value=96 Score=18.78 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=36.2
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
..-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 16 ~~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 16 FHVFVGDLSP---EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp EEEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred cEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3456676653 344567888889999998777532 235667899999888864
No 179
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.56 E-value=79 Score=17.77 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=36.6
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec---CccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 14 ~l~V~~l~~---~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 14 TLYVGGLGD---TITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp CEEEECCTT---TSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT
T ss_pred EEEEcCCCC---CCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 446676663 34456788888999999887764 3346667899999988864
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=29.38 E-value=98 Score=19.29 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=36.3
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec---CccEEEEcCHHHHHHHHhh-CCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---NSPTLVVSSAELAGEMFKT-HDIVIS 121 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~dp~~~~~il~~-~~~~~~ 121 (210)
.-++|++ .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++.. +...+.
T Consensus 41 ~lfVgnl-----~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 99 (121)
T 2bz2_A 41 TLYVYGE-----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVE 99 (121)
T ss_dssp EEEEECS-----SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCS
T ss_pred EEEEcCC-----CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3466762 23456788889999998877764 3345666788888888754 443343
No 181
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=29.27 E-value=1.4e+02 Score=20.58 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=36.5
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec----CccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG----NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~i~dp~~~~~il~~ 115 (210)
.-++||+... .--.+.+.++..+||+|..+.+. |.-.|-..+++.++.++..
T Consensus 6 ~l~V~nL~~~--~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~ 61 (205)
T 3tyt_A 6 VLMVYGLDQS--KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITH 61 (205)
T ss_dssp EEEEECCCTT--TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCcc--cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 4466777621 22345678888999999988864 3457777899888877753
No 182
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=29.16 E-value=1.4e+02 Score=20.32 Aligned_cols=57 Identities=12% Similarity=0.260 Sum_probs=37.6
Q ss_pred ccccccccCCCChhHHHHHHHHhhCCcEEEEec---------CccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 64 ILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---------NSPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 64 ~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++.. +...+.++
T Consensus 32 ~V~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 98 (216)
T 2qfj_A 32 YVGSIYY---ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR 98 (216)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred EEECCCC---CCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence 4555543 33456788889999999888763 2246677899999988863 44334433
No 183
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=28.61 E-value=1.6e+02 Score=23.26 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=36.3
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEec---------CccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~dp~~~~~il~~ 115 (210)
..-++||+.. .-..+.+.++..+||+|..+.+. |.-+|...+++.+..++..
T Consensus 103 ~~lfV~nL~~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 103 KTLFVARVNY---DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 3457777653 23456778888899999887763 2236667789888888855
No 184
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.29 E-value=97 Score=18.37 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=39.9
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecCc----------cEEEEcCHHHHHHHHhh--CCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNS----------PTLVVSSAELAGEMFKT--HDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~----------~~v~i~dp~~~~~il~~--~~~~~~~~ 123 (210)
.-++|++.. .-..+.+.++..+||+|..+.+... -.|-..+++.++.++.. +...+.++
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 17 KILVRNIPF---QANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp CEEEESCCT---TCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred EEEEeCCCC---cCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 456677663 3445668888899999988886432 35666899999888865 34444443
No 185
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=28.22 E-value=1e+02 Score=18.63 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=35.2
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEec-CccEEEEcCHHHHHHHHhh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~i~dp~~~~~il~~ 115 (210)
-++|++.. .-..+.+.++..+||+|..+.+. |.-.|-..+++.++.++..
T Consensus 34 l~V~nLp~---~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~ 84 (108)
T 2jvo_A 34 LFVRPFPL---DVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEE 84 (108)
T ss_dssp EEECSSCT---TCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHH
T ss_pred EEEECCCC---CCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 35566643 23456688888999998877764 4456667899988888864
No 186
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=28.19 E-value=39 Score=20.10 Aligned_cols=49 Identities=10% Similarity=0.166 Sum_probs=33.0
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEec--------CccEEEEcCHHHHHHHHh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG--------NSPTLVVSSAELAGEMFK 114 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~dp~~~~~il~ 114 (210)
-++|++.. .-..+.+.++..+||+|..+.+. |.-.|-..+++.++.++.
T Consensus 12 l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 12 VFVGGIDV---RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred EEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 35566653 33456678888999999877653 223555678888888876
No 187
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=28.07 E-value=1.2e+02 Score=19.52 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=36.2
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecCc---------cEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGNS---------PTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~---------~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+... -.|-..+++.++.++..
T Consensus 72 ~l~v~nl~~---~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 72 SLKVDNLTY---RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 445666653 3445667888899999988876432 35667899999998865
No 188
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=27.96 E-value=1.2e+02 Score=19.23 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=39.2
Q ss_pred CCccccccccCC-CChhHHHHHHHHhhCCcEEEEec------CccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 62 LPILGNLHQLLG-TLPHRSLKALSERYGPLMFVYFG------NSPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 62 ~p~lG~~~~~~~-~~~~~~~~~~~~~yG~i~~~~~~------~~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
.-++|++..-.. .+..+.+.++..+||+|..+.+. |.-.|-..+++.+...+.. ++..+.++
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 456687764211 12223567889999999887763 3346777899888888755 33344444
No 189
>3ezh_A Nitrate/nitrite sensor protein NARX; histidine kinase, sensor domain, four-helix bundle, nitrate sensor, selenomethionyl MAD; HET: MSE; 1.70A {Escherichia coli K12} PDB: 3ezi_A
Probab=27.46 E-value=95 Score=19.71 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=29.3
Q ss_pred ChhHH-HHhHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHhhcCC
Q 028387 145 GEYWR-QVRKICILQLLSVRRVQSFQHVRNDEVSSLITKIRLSCLH 189 (210)
Q Consensus 145 g~~wk-~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 189 (210)
...|. ..|..+ ...-.........+.+...++.++..++...+.
T Consensus 66 ~~~W~~~l~p~l-~~~~~~~~~~~~v~~FV~~ID~lV~~LE~~sE~ 110 (125)
T 3ezh_A 66 QDYWRNELIPAL-MRAQNRETVSADVSQFVAGLDQLVSGFDRTTEM 110 (125)
T ss_dssp HHHHHHTHHHHH-HHCSSGGGTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35787 577777 444344434455677888888888888876543
No 190
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=26.64 E-value=92 Score=17.55 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=33.6
Q ss_pred ccccccccCCCChhHHHHHHHHhhCCcEEEEec----------CccEEEEcCHHHHHHHHhh
Q 028387 64 ILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG----------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 64 ~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----------~~~~v~i~dp~~~~~il~~ 115 (210)
++|++.. .-..+.+.++..+||++..+.+. +.-.|-..+++.++.++..
T Consensus 8 ~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 8 HIGRLTR---NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp EEECCCT---TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH
Confidence 4555542 33456778888999999877652 2235667899999888864
No 191
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.60 E-value=99 Score=17.90 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=33.1
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEecC----ccEEEEcCHHHHHHHHhh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN----SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~----~~~v~i~dp~~~~~il~~ 115 (210)
-++|++.. .-..+.+.++..+||+|..+..-. .-.|-..+++.++.++.-
T Consensus 11 l~V~nl~~---~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l 64 (94)
T 2e5g_A 11 VFVSGFPR---GVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQ 64 (94)
T ss_dssp EEEECCCT---TCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTC
T ss_pred EEEECCCC---CCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhc
Confidence 35566653 344567888889999988763221 234556799999988863
No 192
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=26.50 E-value=1.2e+02 Score=18.95 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=33.7
Q ss_pred ccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 64 ILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 64 ~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 67 ~v~nlp~---~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 67 YVGGLAE---EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCC---CCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 4454442 234467888899999998887632 235667899988888854
No 193
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.43 E-value=1.1e+02 Score=18.43 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=33.8
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCc----EEEEec-----CccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPL----MFVYFG-----NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i----~~~~~~-----~~~~v~i~dp~~~~~il~~ 115 (210)
..-++|++.. .-..+.+.++..+||+| ..+... +.-.|-..+++.++.++..
T Consensus 26 ~~l~V~nLp~---~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 26 KVLYLKNLSP---RVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 86 (115)
T ss_dssp SEEEEECCCT---TCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHH
Confidence 3456677653 34456677888899976 444432 2235666899999888865
No 194
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=26.42 E-value=98 Score=17.77 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=33.6
Q ss_pred ccccccccCCCChhHHHHHHHHhhC--CcEEEEecC-----c----cEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 64 ILGNLHQLLGTLPHRSLKALSERYG--PLMFVYFGN-----S----PTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 64 ~lG~~~~~~~~~~~~~~~~~~~~yG--~i~~~~~~~-----~----~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
++||+.. .-..+.+.++..+|| ++..+.+.. . -.|-..+++.++.++.. ++..+.++
T Consensus 5 ~V~nL~~---~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 5 YIGNLTW---WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred EEeCCCC---CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 4555543 234567788889999 877665421 1 24555788888887743 33344443
No 195
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.95 E-value=1e+02 Score=17.75 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=36.3
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC-ccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN-SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~-~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 12 ~l~V~nLp~---~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 12 KLHVGNISP---TCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp EEEEESCCS---SCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 446677753 345577888899999998887643 345556788888888854
No 196
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.66 E-value=1e+02 Score=17.78 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=34.3
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEE-EecC---------ccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFV-YFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~-~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+ .+.. .-.|-..+++.++.++..
T Consensus 7 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 7 GIFIGNLDP---EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp EEEEECCCT---TCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 345566653 23457788888999988665 4422 235666899999998864
No 197
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.49 E-value=1.1e+02 Score=17.97 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=39.2
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
..-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++.. +...+.++
T Consensus 13 ~~l~v~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 13 GKLFVGGLSF---DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp SEEEEESCCT---TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CEEEEECCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3456677653 344566888889999998887643 224556789988888854 44344443
No 198
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=25.47 E-value=1e+02 Score=17.59 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=27.0
Q ss_pred ChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 75 LPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 75 ~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
-..+.+.++..+||+|..+.+.. .-.|-..+++ ++..+..
T Consensus 13 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~ 61 (90)
T 2ki2_A 13 ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAK 61 (90)
T ss_dssp SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHT
T ss_pred CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHH
Confidence 34566777888999998877642 1255567888 7666654
No 199
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.38 E-value=1.1e+02 Score=18.23 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=35.9
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec---CccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 27 ~l~V~nl~~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 27 TVYCGGIAS---GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp EEEEECCSS---CCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 345566653 33456778888899999888764 3456667899988888754
No 200
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=25.31 E-value=1.2e+02 Score=18.36 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=34.8
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 27 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 27 NLFIYHLPQ---EFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp CEEEESCCS---SCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH
Confidence 346676653 334577888889999987776532 135556799988888854
No 201
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=25.18 E-value=1.2e+02 Score=18.24 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=34.6
Q ss_pred CCccccccccCCC-ChhHHHHHHHHhhCCcEEEEec-CccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGT-LPHRSLKALSERYGPLMFVYFG-NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~-~~~~~~~~~~~~yG~i~~~~~~-~~~~v~i~dp~~~~~il~~ 115 (210)
--++|++.. . -..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 29 ~l~V~nl~~---~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 29 RVFIGNLNT---ALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp EEEECSCCC---SSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHH
T ss_pred EEEEeCCCc---ccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 345666653 2 3466788889999998877762 3345556788888887744
No 202
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=25.03 E-value=1.2e+02 Score=22.10 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=40.5
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEec-------CccEEEEcCHHHHHHHHhhCCCCCCCC
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-------NSPTLVVSSAELAGEMFKTHDIVISNR 123 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~i~dp~~~~~il~~~~~~~~~~ 123 (210)
..-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..+...+.++
T Consensus 42 ~~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 108 (292)
T 2ghp_A 42 TTVLVKNLPK---SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQN 108 (292)
T ss_dssp CEEEEEEECT---TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTE
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCc
Confidence 3456677663 34456788889999999877653 234666789999999985444444443
No 203
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=24.90 E-value=1.6e+02 Score=19.72 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=33.8
Q ss_pred hhHHHHHHHHhhCCcEEEEec----CccEEEEcCHHHHHHHHhh-CCCCCCCC
Q 028387 76 PHRSLKALSERYGPLMFVYFG----NSPTLVVSSAELAGEMFKT-HDIVISNR 123 (210)
Q Consensus 76 ~~~~~~~~~~~yG~i~~~~~~----~~~~v~i~dp~~~~~il~~-~~~~~~~~ 123 (210)
..+.+.++..+||+|..+.+. |.-.|-..+++.++.++.. +...+.++
T Consensus 17 ~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (198)
T 1qm9_A 17 TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGK 69 (198)
T ss_dssp CHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSC
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCe
Confidence 456778888999999888764 3456777899888888753 33334333
No 204
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.80 E-value=1.3e+02 Score=18.74 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=37.7
Q ss_pred CCCCCcc--ccccccCCCChhHHHHHHHHhhCCcEEEEecC---ccEEEEcCHHHHHHHHhh
Q 028387 59 PPKLPIL--GNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 59 p~~~p~l--G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---~~~v~i~dp~~~~~il~~ 115 (210)
|...-++ |++.. .-..+.+++...+||.|..+.+.. .-.|-..+++.++.++..
T Consensus 24 pt~~L~V~Ng~L~~---~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 24 ATQSLVVANGGLGN---GVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp CCSEEEEETCTGGG---TCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCC---CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 4445667 55653 234577889999999998887642 346667799888888865
No 205
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=24.65 E-value=1.3e+02 Score=18.72 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=40.1
Q ss_pred CCCCCccccccccC--CCChhHHHHHHHHhhCCcEEEEecC-------------ccEEEEcCHHHHHHHHhh-CCCCCCC
Q 028387 59 PPKLPILGNLHQLL--GTLPHRSLKALSERYGPLMFVYFGN-------------SPTLVVSSAELAGEMFKT-HDIVISN 122 (210)
Q Consensus 59 p~~~p~lG~~~~~~--~~~~~~~~~~~~~~yG~i~~~~~~~-------------~~~v~i~dp~~~~~il~~-~~~~~~~ 122 (210)
|...-.+.|+..-. ..+..+-+.+...+||+|..+.+.. .-.|-..+++.++..... ++..|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 33455666665321 2455677778888999988776531 124455688877777654 5555555
Q ss_pred CC
Q 028387 123 RP 124 (210)
Q Consensus 123 ~~ 124 (210)
|.
T Consensus 99 R~ 100 (118)
T 3ue2_A 99 RK 100 (118)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 206
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=24.36 E-value=1.2e+02 Score=17.95 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=38.9
Q ss_pred CCccccccccCC---CChhHHHHHHHHhhCCcEEEEec---------CccEEEEcCHHHHHHHHhh-CCCCCC
Q 028387 62 LPILGNLHQLLG---TLPHRSLKALSERYGPLMFVYFG---------NSPTLVVSSAELAGEMFKT-HDIVIS 121 (210)
Q Consensus 62 ~p~lG~~~~~~~---~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~i~dp~~~~~il~~-~~~~~~ 121 (210)
.-++|+++.... .-..+.+.++..+||+|..+.+. |.-.|-..+++.++.++.. +...+.
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 446677765311 22346778888999999888764 2236677899888888854 433343
No 207
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.07 E-value=96 Score=18.88 Aligned_cols=55 Identities=9% Similarity=-0.036 Sum_probs=35.7
Q ss_pred CCCCCccccccccCCCChhHHHHHHHHhhCCc-EEEEec--------CccEEEEcCHHHHHHHHhhC
Q 028387 59 PPKLPILGNLHQLLGTLPHRSLKALSERYGPL-MFVYFG--------NSPTLVVSSAELAGEMFKTH 116 (210)
Q Consensus 59 p~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i-~~~~~~--------~~~~v~i~dp~~~~~il~~~ 116 (210)
+...-++|++.. .-..+.+.++..+||.+ ..+.+. +.-.|-..+++.++.++..+
T Consensus 14 ~~~~l~V~nLp~---~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~ 77 (114)
T 2cpy_A 14 AKVCAHITNIPF---SITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 77 (114)
T ss_dssp CCCEEEEESCCT---TSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGC
T ss_pred CccEEEEeCcCC---cCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhC
Confidence 334456677653 34456678888899988 333332 23466778999999988663
No 208
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=23.90 E-value=1.4e+02 Score=18.86 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=36.7
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 49 ~l~V~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 49 SLKVDNLTY---RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp CEEEECCCS---SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 345666653 345677888999999998887642 236677899999988854
No 209
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.14 E-value=1.3e+02 Score=17.97 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=35.7
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC------ccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~------~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 24 ~l~V~nLp~---~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~ 80 (109)
T 1x4a_A 24 RIYVGNLPP---DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYG 80 (109)
T ss_dssp EEEEESCCT---TCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHH
Confidence 345666653 345577889999999998777632 236677899988888844
No 210
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=23.13 E-value=1.3e+02 Score=18.18 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=33.3
Q ss_pred ccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 64 ILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 64 ~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 44 ~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 44 FIYHLPQ---EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp EEECSCT---TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 4455542 234567888889999998887642 225566788888888864
No 211
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.92 E-value=1.2e+02 Score=17.76 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=35.2
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 17 TIRVTNLSE---DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEEEESCCT---TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 446676653 234566778888999998877632 135667899999888864
No 212
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=22.81 E-value=1.8e+02 Score=19.54 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHhhCCcEEEEec--------CccEEEEcCHHHHHHHHhh
Q 028387 75 LPHRSLKALSERYGPLMFVYFG--------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 75 ~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~dp~~~~~il~~ 115 (210)
-..+.+.++..+||+|..+.+. +.-.|...+++.++.++..
T Consensus 100 ~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 100 VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp CCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHH
Confidence 3456788889999999888763 2346677899999888864
No 213
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=22.57 E-value=1.6e+02 Score=18.97 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=36.8
Q ss_pred CCCccccccccCCCChhHHHHHHHHhhCCcEEEEec-----C----ccEEEEcCHHHHHHHHhh
Q 028387 61 KLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG-----N----SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 61 ~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-----~----~~~v~i~dp~~~~~il~~ 115 (210)
..-+++++.. .-..+.+.++..+||+|..+.+. + .-.|-..+++.++.++..
T Consensus 40 ~~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 40 CTLYVGNLSF---YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp CEEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3456677653 34456788889999999887762 1 225667899999888865
No 214
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.54 E-value=1.2e+02 Score=17.60 Aligned_cols=54 Identities=13% Similarity=0.027 Sum_probs=34.5
Q ss_pred CCccccccccCC-CChhHHHHHHHHhhCCcEEEEec------CccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLG-TLPHRSLKALSERYGPLMFVYFG------NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~-~~~~~~~~~~~~~yG~i~~~~~~------~~~~v~i~dp~~~~~il~~ 115 (210)
--++|++..-.. .+..+.+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~ 71 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNS 71 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHH
Confidence 346677764211 12222344889999999888874 2345666799888888754
No 215
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=22.23 E-value=60 Score=20.50 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=14.3
Q ss_pred HHHHHHHHhhCCcEEEEe
Q 028387 78 RSLKALSERYGPLMFVYF 95 (210)
Q Consensus 78 ~~~~~~~~~yG~i~~~~~ 95 (210)
...+++.+|||.+|++.+
T Consensus 8 ~~~~~lk~kygk~y~v~~ 25 (114)
T 3fgx_A 8 INTDELKQKYGRVYEIRI 25 (114)
T ss_dssp -CHHHHHHHHSSEEEEEE
T ss_pred ccHHHHHHHhCceEEEEe
Confidence 345789999999999866
No 216
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=22.09 E-value=1.3e+02 Score=17.73 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=35.7
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
.-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 15 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 15 KLFIGQIPR---NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 446676653 345567888899999998887643 235666788888888754
No 217
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.78 E-value=1.3e+02 Score=17.66 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=36.6
Q ss_pred CCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhhCC
Q 028387 56 PPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKTHD 117 (210)
Q Consensus 56 ~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~~~ 117 (210)
++.|...-++|++.. .-..+.+.++..+|| |..+.+.. .-.|-..+++.++.++.-+.
T Consensus 11 ~~~~~~~l~V~nLp~---~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g 77 (103)
T 2dng_A 11 PTEPPYTAYVGNLPF---NTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDG 77 (103)
T ss_dssp CSSSCEEEEEESCCT---TCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTT
T ss_pred CCCCCeEEEEeCCCC---CCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCC
Confidence 333444556777753 344566788888896 77766531 23566789999988884333
No 218
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=21.74 E-value=1.3e+02 Score=17.63 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=34.5
Q ss_pred ccccccccCCCChhHHHHHHHHhhCCcEEEEecC----------ccEEEEcCHHHHHHHHhhCCCCCCC
Q 028387 64 ILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN----------SPTLVVSSAELAGEMFKTHDIVISN 122 (210)
Q Consensus 64 ~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~----------~~~v~i~dp~~~~~il~~~~~~~~~ 122 (210)
++|++..- -..+.+.++..+|| +..+.+.. .-.|-..+++.++.++.-+...+.+
T Consensus 23 ~V~nLp~~---~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g 87 (100)
T 2j76_E 23 FLGNLPYD---VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 87 (100)
T ss_dssp EESCCSSC---CSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTT
T ss_pred EEeCCCCC---CCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 55666532 23345677778899 88887632 2356678999888888434433433
No 219
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=20.95 E-value=1.4e+02 Score=17.48 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=33.8
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEec---CccEEEEcCHHHHHHHHhh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~dp~~~~~il~~ 115 (210)
-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+.+.++.++..
T Consensus 30 l~V~nlp~---~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 30 AYIGNIPH---FATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred EEEcCCCc---ccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 35566553 33456788888999999887764 2335556788888777754
No 220
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.42 E-value=1.1e+02 Score=18.28 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=36.8
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec----C----ccEEEEcCHHHHHHHHhhCCCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG----N----SPTLVVSSAELAGEMFKTHDIVISNRP 124 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~----~~~v~i~dp~~~~~il~~~~~~~~~~~ 124 (210)
.-+++++.. .-..+.+.++..+||.+ .+.+. + .-.|-..+++.++.++..+...+.++.
T Consensus 17 ~l~V~nLp~---~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (102)
T 1wez_A 17 CVHMRGLPY---RATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRY 83 (102)
T ss_dssp EEEEESCCT---TCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 345666653 34456677888889955 65542 1 235666788888888865554455553
No 221
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=20.39 E-value=2.9e+02 Score=21.11 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCccccccccCCCChhHHHHHHHHhhCCcEEEEec---CccEEEEcCHHHHHHHHhh
Q 028387 52 HLNLPPSPPKLPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG---NSPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 52 ~~~~~pgp~~~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~i~dp~~~~~il~~ 115 (210)
.......|...-++||+..- ..--.+.+++...+||.|..+.+. +.-.|-..+.+.++.++..
T Consensus 10 ~v~~~~~ps~~l~VgN~gl~-~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 10 GIETVSYATQSLVVANGGLG-NGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 75 (345)
T ss_dssp TCCCCSSCCSEEEEETCSGG-GTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHH
T ss_pred CceecCCCCCEEEEEcCCCC-CCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 33444556667788886321 234567778889999999888763 2235666788888888755
No 222
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=20.27 E-value=1.7e+02 Score=18.33 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=34.2
Q ss_pred CccccccccCCCChhHHHHHHHHhhCCcEEEEecC---------ccEEEEcCHHHHHHHHhh
Q 028387 63 PILGNLHQLLGTLPHRSLKALSERYGPLMFVYFGN---------SPTLVVSSAELAGEMFKT 115 (210)
Q Consensus 63 p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~i~dp~~~~~il~~ 115 (210)
-++|++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 45 l~V~nLp~---~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 45 LMVNYIPT---TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp EEEESCST---TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 34565543 334567888889999988776531 235667899999888864
No 223
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=20.08 E-value=1.8e+02 Score=18.67 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=38.7
Q ss_pred CCccccccccCCCChhHHHHHHHHhhCCcEEEEec--------CccEEEEcCHHHHHHHHhhCCCCCCCCC
Q 028387 62 LPILGNLHQLLGTLPHRSLKALSERYGPLMFVYFG--------NSPTLVVSSAELAGEMFKTHDIVISNRP 124 (210)
Q Consensus 62 ~p~lG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~i~dp~~~~~il~~~~~~~~~~~ 124 (210)
.-++|++.. .-..+.+.++.++|| +..+.+. +.-.|-..+++.++..+..+...+.++.
T Consensus 48 ~lfV~nLp~---~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~ 114 (139)
T 2hgn_A 48 CVHMRGLPY---KATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRY 114 (139)
T ss_dssp CEECCSCCT---TCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEE
Confidence 345666653 345677888889999 5577653 2346777899999888855544455553
Done!